BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] (497 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 430 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 497/497 (100%), Positives = 497/497 (100%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI Sbjct: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV Sbjct: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 Query: 481 KMSVDCDIIREILGLIL 497 KMSVDCDIIREILGLIL Sbjct: 481 KMSVDCDIIREILGLIL 497 >gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 500 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 380/497 (76%), Positives = 440/497 (88%), Gaps = 3/497 (0%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI Sbjct: 1 MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+AQGA IVVSS + QDFS ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV Sbjct: 61 PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S +DNRLTTPSP+Y+A+AL+YL+S Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240 Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K SPA+I +D +S +VM+RAHNAGCRVLSVGY+G FI LK + I++KQQV+ISVEG Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 KDFDFLFPL G FQV NALV+AGLCIA GID +V+E+LEK++V+PGRFEF+G NS+GGR Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480 Query: 478 GEKKMSVDCDIIREILG 494 G+ KMSVDCD+IREIL Sbjct: 481 GKIKMSVDCDVIREILR 497 >gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] Length = 486 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 232/495 (46%), Positives = 313/495 (63%), Gaps = 12/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ DL +FPEL QL +I +++DSR ++ G +FVA+ G+K DG +I Sbjct: 1 MKITDLAGSNFPELSAQLK---GDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A+V + + + P+ + + R+FL+ AS YG+ PE ++AV Sbjct: 58 ADALSRGASAVVAGTGTPAE-------AGAPVFAISDPRRFLAKAASSFYGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SG S+ IG T ++ + LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQRRLDGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQ+ NALVAAGL ++ GI + LE+L GR E VG G Y Sbjct: 291 YEIHVPLAGDFQIANALVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L +L+++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALANVLESVRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRAEI+ G E G+R EAIR A+ ML D L+VAGKGHE V + Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKGHEEGQTVGS-V 469 Query: 480 KKMSVDCDIIREILG 494 D +R+ LG Sbjct: 470 TLPFSDHAEVRKALG 484 >gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium fredii NGR234] gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium fredii NGR234] Length = 486 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 236/495 (47%), Positives = 319/495 (64%), Gaps = 12/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++DL +FPEL QL E I +++DSR ++ G +FVA+ G K +G +I Sbjct: 1 MKIRDLAGTNFPELSAQL---QGNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A++V+ + + P+ + R+FL+ A+RL+G+ PE ++AV Sbjct: 58 ADALSRGAAAVIVAEG-------SGADAGAPVFELSEPRRFLAQAAARLFGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SGL++ IG T + D LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ GI++ + LEKL GR E VG G Y Sbjct: 291 FEIHVPLAGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L+++R T+GR+I+VFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALENVLESVRPFTTGRVIIVFGCGGDRDKGKRPIMGQIAARLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IR+EI+ G G E +R EAIRTA+ ML D L+VAGKGHE + + Sbjct: 411 PRSEIPETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKGHEEGQTIGS-V 469 Query: 480 KKMSVDCDIIREILG 494 D +R+ LG Sbjct: 470 TLPFSDHAEVRKGLG 484 >gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL + E +I V+SDSR ++ G++F A+ G K DG F+ Sbjct: 3 MKLKEI--ALFKELASG------NAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV + D + P+L VD+ R L++ A++ YGK P+ ++AV Sbjct: 55 ADAVKRGASAIVAGKDTVIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+ Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII++DD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+AIVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ PG E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] Length = 487 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 231/497 (46%), Positives = 315/497 (63%), Gaps = 13/497 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL Q+ + +I +S+DSR + G FVA+ G K DG FI Sbjct: 1 MNLRDIAGNTFPELNGQVG---GALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA ++ + ++ + P+L VD R+FL++ ASR YGK PE ++AV Sbjct: 58 ADAVSRGASVVIAGNGAAV--------TGAPLLTVDEPRRFLAVAASRFYGKQPETMVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G + IG T +S D LTTP P+ L + L+ L+ Sbjct: 110 TGTAGKTSVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALAD 169 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y AKMRLF +LLP Sbjct: 170 EGVTHAAMEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S++ + A + G + +VG +G F+ LK+V +KQ + + Sbjct: 230 KGSPAVIFADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDI 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL I+ G+ + + + LEKL GR E VG G Y Sbjct: 290 FEIHIPLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GRIIVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 350 VDYAHKPDALENVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 409 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ E +R EAIR A+ ML D L+VAGKGHE + + Sbjct: 410 PRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKGHEEGQTIGS-V 468 Query: 480 KKMSVDCDIIREILGLI 496 D +R+ L + Sbjct: 469 TLPFSDHAELRKALEEV 485 >gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] Length = 495 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 187/475 (39%), Positives = 270/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR ++ G++F A+ G++ G FIP A+ +GA AI+ Sbjct: 10 LSQLGLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S+ ++VV++ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+FV+ Sbjct: 70 AAGAGIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVR 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 130 QIWTELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 189 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +LP E A+I +D Sbjct: 190 DQRRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGA 249 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G V+SVG + L + Q + + K + L G FQ N Sbjct: 250 EMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQAEN 309 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V E L L V GR + G ++VDYAHT +++ +K Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAVASAIK 369 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 370 ALRPHVLGRLIAIVGAGGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPAAIRAAVKG 429 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G PG IE G+R EAI +ML D L++ GKGHET V + D + Sbjct: 430 GAPGCIEIGDRAEAILRGADMLGPGDALIICGKGHETGQTVGD-TVLPFNDVEQA 483 >gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CNPAF512] Length = 486 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 237/495 (47%), Positives = 313/495 (63%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P+ + I+ +SSDSR + G FVA+ G K DG FI Sbjct: 1 MKLRDLAGDQFPELEAQLEG-PVGLLD--ISGLSSDSRKVAPGNAFVAVAGTKADGAGFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+GA + S P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 58 ADAAARGAVVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 169 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + +K A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 229 KGAPAVIFADDPWSAQAVKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ + LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IR+EI+ E G+R AIR A+ ML D L+VAGKGHE + + Sbjct: 409 PRSEEPAAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGS-V 467 Query: 480 KKMSVDCDIIREILG 494 D +R+ L Sbjct: 468 TLPFSDHAEVRKALE 482 >gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium medicae WSM419] gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae WSM419] Length = 486 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 232/495 (46%), Positives = 309/495 (62%), Gaps = 12/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++DL FPEL QL +I +++DSR ++ G +FVA+ G K DG +I Sbjct: 1 MKIRDLAGSSFPELSAQLK---GDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A+V SA + + + R+FL+ +S +G+ PE ++AV Sbjct: 58 TDALSRGASAVVA-------GTSARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SG S+ IG T +S + LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+ L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQQRLDGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSADAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQV NALVAAGL ++ GI + LE+L GR E VG G Y Sbjct: 291 YEIHVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L +L+++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALSNVLESLRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRAEI+ G E G+R EAIR A+ ML D L+VAGKGHE V + Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKGHEEGQTVGS-V 469 Query: 480 KKMSVDCDIIREILG 494 D +R+ LG Sbjct: 470 TLPFSDHAEVRKALG 484 >gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 493 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 179/475 (37%), Positives = 264/475 (55%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL++ + +I ++ DSR ++ G++F A+ G + G FI A+ GA AI+ Sbjct: 8 LSQLALTARGGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++VV + R+ L+ A+ +G P ++AVTGT+GK+S+++FV+ Sbjct: 68 AEGARIAADELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELGHMAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A F+N +DH+DYH T +AYF AK LF+ +L ++ A+I DD Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A G VL+VG + L Q + + GK F L G FQ N Sbjct: 248 AIRDIAQARGQTVLTVGSGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G ++ V + L L V GR + T S G ++VDYAHT +++ L+ Sbjct: 308 VLLACGLVIASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALQ 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MG+ A + ADI VTDDNPRSEDP IRA ++ Sbjct: 368 ALRPHVMGRLIAIVGAGGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAVMA 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E +R EAI I+ L D L++AGKGHET IV + + D + Sbjct: 428 GAPDATEVADRAEAILRGIDALQPGDALLIAGKGHETGQIVGD-QVLPFDDVEQA 481 >gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CFN 42] gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CFN 42] Length = 506 Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 237/495 (47%), Positives = 314/495 (63%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR+++ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRNVEPGNAFVAVTGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 ADAAGRGAAVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + ++ A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 249 KGAPAVIFADDPWSPQAVQAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 308 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G++ + LEKL GR E VG G Y Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAY 368 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ E G+R AIR A+ ML D L+VAGKGHE + G Sbjct: 429 PRSEEPAAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIG-GV 487 Query: 480 KKMSVDCDIIREILG 494 D +R+ L Sbjct: 488 TLPFSDHAEVRKALE 502 >gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] Length = 493 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 187/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + + +S DSR +Q G +F A+ G+K G FI A+ GA A++ Sbjct: 8 LSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + A ++ ++V D R+ LS A+ YG P+ ++AVTGT+GK+SV++FV+ Sbjct: 68 AEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI GL++ +G T ++ TTP PI L + L++ S+ G+TH ++EASSHGL Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH+T AYF+AK LF +LP++ A+I DD Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +++ A GC V++VG G +HL Q + S GK + L G FQ N Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AAGL IA G D A V + L L V GR + T GG ++VDYAHT +++ L+ Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRA ++ Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI I+ + D L++AGKGHET + + + D + Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481 >gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] Length = 499 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 274/482 (56%), Gaps = 1/482 (0%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 +D +++L + + I+ +S DSR G +F A+ G++ G FIP A+ +G Sbjct: 7 NQDLSRPLSELGLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERG 66 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI+ + + S+ +++V++ R+ L+ A+ +G PE ++AVTGT+GK+ Sbjct: 67 ATAILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKT 126 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SVASFV+QI G + +G T +++ TTP PI L +AL+ ++ GVTH ++ Sbjct: 127 SVASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAM 186 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGLDQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +LP+E A+I Sbjct: 187 EASSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVIN 246 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +D E+ A G VL+VG + L + Q + + + F + L Sbjct: 247 MNDPRGAEMRAIAAARGQEVLTVGRGLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLI 306 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G FQ N L+A GL IA G D V L L V GR E T G ++VDYAHT + Sbjct: 307 GGFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGASVFVDYAHTPD 366 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ +K +R GR++ + G GGDRD GKRP+MG+ A + AD+ IVTDDNPR+EDP Sbjct: 367 AVATAIKALRPHVLGRLLAIVGAGGDRDAGKRPLMGQAAAENADLVIVTDDNPRTEDPAA 426 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 IRA + G P +E G+R EAI +++L D L++ GKGHE+ IV + + D + Sbjct: 427 IRAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICGKGHESGQIVGS-DVLPFDDVE 485 Query: 488 II 489 Sbjct: 486 QA 487 >gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] Length = 493 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 186/478 (38%), Positives = 270/478 (56%), Gaps = 2/478 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + +++L + RE +I+ +S DSR + G +F A+ G K G F+ A++QGA A++ Sbjct: 5 KTLSELGLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAAVL 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + + S +++ + R+ L+ + +G P ++AVTGT+GK+SVA+F Sbjct: 65 TDAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATF 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V+++ Q G + +G T + R TTP PI L KAL+ + GV H ++EASSH Sbjct: 125 VRRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVEHAAMEASSH 184 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG++L A FTN +DH+DYH + YF AK LF +LP+E A++ DDA Sbjct: 185 GLDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDAR 244 Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +++ A G L+VG QG + L Q++ +S G L G FQ Sbjct: 245 GIDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQ 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL+AAGL IA G ++ V L KL V GR + T G +YVD+AHT +++ Sbjct: 305 GQNALLAAGLVIACGAEAEDVFRALPKLDTVRGRMQLAATRDSGAAVYVDFAHTPDAVST 364 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +K +R GR++ + G GGDRD GKRP+MG A + AD+ IVTDDNPRSEDP IR + Sbjct: 365 AIKALRPHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIVTDDNPRSEDPAAIRLQ 424 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G P IE G+R EAI ++ML D L+V GKGHET IV + D + Sbjct: 425 VLGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 481 >gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ochrobactrum anthropi ATCC 49188] gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi ATCC 49188] Length = 490 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 234/487 (48%), Positives = 313/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL + E +I V+SDSR ++ G++F A+ G K DG F+ Sbjct: 3 MKLKEI--ALFKELASG------DAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK P+ ++AV Sbjct: 55 ADAVKRGASAIIAGKDTAIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+ Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII++DD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+AIVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ PG E G+R EAI TA+ M+ D LVVAGKGHE IV + Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQAGDTLVVAGKGHEEGQIVGS-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] Length = 483 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 227/476 (47%), Positives = 296/476 (62%), Gaps = 8/476 (1%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + +I +S+DSR + G++FVA+ G K DG +I AI +GA AIV L Sbjct: 11 LEDQNLSSMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTDCHAVL 70 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 +D PIL V N R L+L A+R YG PE ++AVTGTSGK+SV SF++QI Sbjct: 71 EDLP------VPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTH 124 Query: 140 SGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + IG +S LTTP P+ L + L +S +GVTH ++EASSHGLDQ R Sbjct: 125 VGFCAASIGTVGVVSPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGR 184 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LDG++L AG+FTNLGRDH+DYH + Y AKM+LF+ LLP +PA+I+ADD YS++V+ Sbjct: 185 LDGVRLTAGAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVID 244 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A RVL++G +G+FI + +V +KQ + VE + F PL G+FQV NAL+A Sbjct: 245 VVTQARRRVLTIGRKGQFITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMA 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AGL IA G+ V LE L PGR EFVG +Y+DYAH +LE +L ++R Sbjct: 305 AGLAIATGVSPRKVFSALETLQGAPGRLEFVGKTENNAPVYIDYAHKPEALEQVLLSVRP 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 T GR+IVVFGCGGDRDQGKRP+MGKIA D ADI IVTDDNPR+E PEKIR +I+ +P Sbjct: 365 FTQGRLIVVFGCGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQAVPT 424 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 IE +R EAI A+E+L D L++AGKGHE I+ D E L Sbjct: 425 AIEIADRGEAISYAVELLKAGDTLIIAGKGHEDGQIIG-QTTYPFSDRLKAIEALE 479 >gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] Length = 493 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 270/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + I ++ DSR ++ G +F A+ G++ G FI A+ GA A++ Sbjct: 8 LSSLGLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + A SN ++V D+ R+ L+ A+ +G P ++AVTGT+GK+SV++FV+ Sbjct: 68 AEGAKIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI GL + +G T ++A TTP PI L + L+ + G+TH ++EASSHGL Sbjct: 128 QIWVEMGLPAVNLGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP++ A++ DD Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGI 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A GC V++VG G +HL+ Q + + GK + L G FQ N Sbjct: 248 DIAAIARARGCEVITVGRDGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AAGL IA G D+ V + L L V GR + T G ++VDYAHT +++ L Sbjct: 308 VLLAAGLVIACGADAQEVFDTLPHLTTVRGRMQLAATRDNGAAVFVDYAHTPDAVATALS 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD+ KRP+MG+ A + AD+ IVTDDNPRSEDP IRA ++ Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPASIRAAVLS 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI ++ L D L++AGKGHET V + + D + Sbjct: 428 GAPDAWEVGDRAEAILRGVDALEPGDALLIAGKGHETGQTVGD-DVLPFDDVEQA 481 >gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] Length = 496 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 178/481 (37%), Positives = 272/481 (56%), Gaps = 1/481 (0%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + + L + R+ K+ +++ DSR ++ G++F A+ G + G FI A+ GA Sbjct: 5 GTVVKSLRDLGLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ +A + ++ ++V ++ R+ L+ ++ +G PE ++AVTGT+GK+S Sbjct: 65 GAVLTDAAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTS 124 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 VA+F +QI Q GL + +G T + + TTP PI L + L+ + GVTH ++E Sbjct: 125 VATFTRQIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGL Q RLDG++L+A FTN +DH+DYH + + YF AK LF +LP++ A+I Sbjct: 185 ASSHGLSQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINI 244 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD +++ A G VL+VG + I L+ Q++ +S EG+ L G Sbjct: 245 DDPRGVDMVAIARARGQEVLTVGREAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIG 304 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ N L+AAGL IA G D V + L L V GR + G ++VDYAHT ++ Sbjct: 305 GFQADNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGAAVFVDYAHTPDA 364 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +K +R GR++ + G GGDRD+GKR +MG+ A + AD IVTDDNPRSEDP I Sbjct: 365 VATAIKALRPHVMGRLVAIVGAGGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDPASI 424 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 RA ++ G P +E G+R EAI ++ L D L++ GKGHE+ IV + D + Sbjct: 425 RAMVMEGAPEALEVGDRAEAILRGVDALGPGDALLICGKGHESGQIVGD-TVFPFDDAEQ 483 Query: 489 I 489 Sbjct: 484 A 484 >gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 492 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 173/503 (34%), Positives = 260/503 (51%), Gaps = 24/503 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK+ +L E++ + + W E ++ + DSR ++ G IFVAI G DGH F Sbjct: 1 MKIAEL-----VEILKTIITKNGINWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I + I + IV L+V ++R+ L+L A YG E I Sbjct: 56 IEKVIEKKPALIVAEEERPGIF-------GVNHLLVKDSRQALALLARTFYGNPTEKISV 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V V + + G + IG + I TTP + L + + Sbjct: 109 IGVTGTNGKTTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAE 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + V+HV++E SSH L Q R+ GI G FTNL +DH+D+H++ + YFNAK LF+ Sbjct: 169 MVKSEVSHVAMEVSSHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKI 228 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L +++ + D + + + + + Q K V ++ T+ + Sbjct: 229 LAEQKALPGVINKDDFYGQRILKEVAHPFVTYGIKEQADIT-AKNVELTNSGTAFTLCYQ 287 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +++ L G F VYN L A G + +G ++++L L+ VPGRFE + + Sbjct: 288 EEEYPVKVKLLGLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELI-DEGQDF 346 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE ILK+ R IT GR+I VFGCGGDRD+ KRP MGKI+ LADI I+T Sbjct: 347 AVIVDYAHTPDGLENILKSARAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIIT 406 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+EDPE I EI G ++++ +R +AI+TA+ + D +V+AGKGHE Sbjct: 407 SDNPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKGHED 466 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ K D + REIL Sbjct: 467 YQIIGT-TKYPFDDRVVAREILR 488 >gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 488 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNEL------PPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti B1/94] Length = 488 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] Length = 493 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L++ I ++ DSR ++ G++F A+ G + G FI A+ GA AI+ Sbjct: 8 LSELALTARGGANPDITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++V ++ R+ L+ A+ +G P+ I+AVTGT+GK+SVASFV+ Sbjct: 68 ARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI L++ +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A F+N +DH+DYH T +AYF AK LF+ +LP++ A+I D Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ + A G +L+VG +G + L Q + S GK L G FQ N Sbjct: 248 EMRRIAEARGQNILTVGPEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V + L L V GR + T S G ++VDYAHT +++ LK Sbjct: 308 VLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALK 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MGK A D AD+ VTDDNPRSEDP IR ++ Sbjct: 368 AMRPHVMGRLIAIVGAGGDRDATKRPLMGKAAADNADLVFVTDDNPRSEDPASIRTAVML 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI I+ L D L++AGKGHET IV + + D + Sbjct: 428 GAPDATEVGDRAEAILRGIDALQPGDALLIAGKGHETGQIVGD-QVLPFDDVEQA 481 >gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] Length = 490 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 490 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNEL------PPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis ATCC 23445] gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 3 str. Tulya] gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC 23445] gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] Length = 488 Score = 363 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] Length = 490 Score = 363 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M13/05/1] Length = 488 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A A C V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelagibaca bermudensis HTCC2601] gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. HTCC2601] Length = 494 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 190/476 (39%), Positives = 272/476 (57%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + R+ ++ +S DSR + G +F A+ G K G FI A+AQGA A++ Sbjct: 8 LSDLGLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + +A S+ +++ R L+ + +G P ++AVTGT+GK+SVASFV+ Sbjct: 68 AEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 ++ Q G + +G T + R TTP PI L KAL+ +S GV H ++EASSHGL Sbjct: 128 RLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L+A FTN +DH+DYH + YF AK LF +LP+E A++ DDA Sbjct: 188 DQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 247 Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ A G VL+VG +G + L Q++ +S G L G FQ Sbjct: 248 DMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NALVAAGL IA G ++ V L +L V GR + T G +YVDYAHT +++ + Sbjct: 308 NALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATRDSGAAVYVDYAHTPDAVATAI 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR+I + G GGDRD GKRP+MG+ A + AD+ IVTDDNPRSEDP IRA+++ Sbjct: 368 KALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAAENADLVIVTDDNPRSEDPAAIRAQVL 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI +++L D L+V GKGHET IV + D + Sbjct: 428 EGAPEATEVGDRAEAILRGVDLLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 482 >gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] Length = 488 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] Length = 490 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A A C V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] Length = 499 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 490 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] Length = 490 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] Length = 497 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 174/478 (36%), Positives = 261/478 (54%), Gaps = 2/478 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + L + R+ I ++ DSR ++ G++F A+ G + G FI A+ QGA A++ Sbjct: 9 QTLGGLGLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVL 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + + S+ +++ ++ R+ L+ A+ + K P + AVTGT+GK+SVASF Sbjct: 69 TDAEGARIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASF 128 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++QI G + +G T S++ TTP PI L + ++ L+ G+TH ++EASSH Sbjct: 129 LRQIWMLVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSH 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q RLDG+ L G+FTNL +DH+DYH + YF+AK LF +L ++ A+I D Sbjct: 189 GLAQRRLDGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLR 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ + A + G VL+VG + + Q + S +G+ L G FQ Sbjct: 249 GVDMAEVAADRGLDVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQ 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N LVAAG+ I G D V L L V GR E + G ++VDYAHT +++ Sbjct: 309 AENVLVAAGMAILSGEDPDQVFTVLPALSTVHGRMELAARRTNGAAVFVDYAHTPDAVAT 368 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GR++ V G GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IR Sbjct: 369 ALKALRPHVLGRLVAVIGAGGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAAIRQA 428 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G P E +R EAI A++ L D L++AGKGHET I+ + D + Sbjct: 429 VLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKGHETGQIIGD-TVFPFDDTEQA 485 >gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 488 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL + + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEIT--LFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 233/495 (47%), Positives = 315/495 (63%), Gaps = 15/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPE+ QL P + I+ +SSDSRH+ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPEIEAQLEG-PAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S A ++ P+L V R+FLS+ ASR +G+ PE ++AV Sbjct: 78 ADAAGRGAAVAIASQAVE---------TSIPVLAVKEPRRFLSIAASRFFGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAG 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY A +LLP Sbjct: 189 EGVTHAAMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAY-MAAKMRLFQLLP 247 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + +K A +AG V +VG +G ++ LK+V +KQ I ++G+ Sbjct: 248 KGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEI 307 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G++ + + LEKL GR E VG G Y Sbjct: 308 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAY 367 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 368 VDYAHKPDALENVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 427 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ G E +R +AIR A+ ML D L+VAGKGHE + + Sbjct: 428 PRSEEPAAIRAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKGHEEGQTIGS-V 486 Query: 480 KKMSVDCDIIREILG 494 D +R+ L Sbjct: 487 TLPFSDHAEVRKALE 501 >gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 488 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis biovar Abortus 2308] gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 6 str. 870] gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 4 str. 292] gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-acetylmuramyl-tripe [Brucella melitensis biovar Abortus 2308] gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] Length = 488 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella canis ATCC 23365] gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC 23365] Length = 488 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL + + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 490 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase [Rhizobium etli CIAT 652] gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CIAT 652] Length = 506 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 237/495 (47%), Positives = 315/495 (63%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR++ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDLFPELEAQLEG-PAGLLD--ISGLSSDSRNVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S + P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 ADAAGRGAAVAIASQPVDA---------SIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S++ +K A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 249 KGAPAVIFADDPWSRQAVKAAVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEI 308 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ + + LEKL GR E VG G Y Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAY 368 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ E G+R AIR A+ ML D L+VAGKGHE + + Sbjct: 429 PRSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGS-V 487 Query: 480 KKMSVDCDIIREILG 494 D +R+ L Sbjct: 488 TLPFSDHAEVRKALE 502 >gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] Length = 490 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL + + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis ATCC 23457] gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC 23457] Length = 488 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] Length = 490 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis M5-90] Length = 490 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 482 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 151/500 (30%), Positives = 248/500 (49%), Gaps = 30/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ E+ I+ V DSR + ++F+AI G K DG L++ Sbjct: 1 MRLVDLLKGVKHEIKGN--------PNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V S +++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+SV ++ I ++ +G + I TTP + L + S + Sbjct: 106 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L HR+D FTNL +DH+D+H++ + + +L Sbjct: 166 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + + + K++ + + + ++ Sbjct: 222 FKMAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQD 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L + V GRFE V T Sbjct: 281 KKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + + I++ ++ +GR I+VFG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE+P++I A+I GI ++ +R EAIR A+ K DV+++AGKGHET Sbjct: 399 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + + +I++EIL Sbjct: 459 IIGD-KVIPFDEREIVKEIL 477 >gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] Length = 499 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] Length = 499 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 492 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 151/500 (30%), Positives = 248/500 (49%), Gaps = 30/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ E+ I+ V DSR + ++F+AI G K DG L++ Sbjct: 11 MRLVDLLKGVKHEIKGN--------PNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V S +++V++ R ++ AS Y + + Sbjct: 63 EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+SV ++ I ++ +G + I TTP + L + S + Sbjct: 116 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 175 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L HR+D FTNL +DH+D+H++ + + +L Sbjct: 176 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESME----EYAKTKSKL 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + + + K++ + + + ++ Sbjct: 232 FKMAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQD 290 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L + V GRFE V T Sbjct: 291 KKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFY 348 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + + I++ ++ +GR I+VFG GGDRD+ KRP+MG++A AD I+T Sbjct: 349 VFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTS 408 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE+P++I A+I GI ++ +R EAIR A+ K DV+++AGKGHET Sbjct: 409 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQ 468 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + + +I++EIL Sbjct: 469 IIGD-KVIPFDEREIVKEIL 487 >gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] Length = 493 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 263/475 (55%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + I ++ DSR ++ G++F A+ G+ G FI A+ GA A++ Sbjct: 8 LSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + + ++V D R+ L+ A+ +G P ++AVTGT+GK+SV++FV+ Sbjct: 68 ATGAAMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI GLS+ +G T ++ TTP PI L +AL+ ++ G+TH ++EASSHGL Sbjct: 128 QIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH T AYF+AK LF +LP++ A+I DD Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGI 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A GC VLSVG G +HL Q + GK + L G FQ N Sbjct: 248 DMAAIARARGCEVLSVGRDGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G A V + + L V GR + T GG ++VDYAHT +++ LK Sbjct: 308 VLLACGLVIACGAKPADVFDTIPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAISTALK 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A AD+ VTDDNPRSEDP IRA +I Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVIA 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI I+ + D L++AGKGHET + + + D + Sbjct: 428 GAPDATEVGDRAEAILRGIDAIGPGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481 >gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 488 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] Length = 493 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 270/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL++ R+ I+ ++ DSR ++ G++F A+ G++ G FI A+ GA AI+ Sbjct: 8 LSQLALTARGGRDPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + + S ++VV++ R+ L+L A+ +G P ++AVTGT+GK+SV++FV+ Sbjct: 68 AEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD Sbjct: 188 EQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G VL+VG + L Q + S GK + L G FQ N Sbjct: 248 EMRAIAAARGQNVLTVGRGPCDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G V E L L V GR + T + G ++VDY+HT +++ L+ Sbjct: 308 ILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALR 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MGK A++ ADI I+TDDNPRSEDP IRA ++ Sbjct: 368 ALRPHVMGRLVAIVGAGGDRDPYKRPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQ 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G PG E G+R EAI ++ L D L++ GKGHET +V + + D + Sbjct: 428 GAPGATEVGDRAEAILRGVDTLEPGDALLICGKGHETGQVVGD-QVLPFDDVEQA 481 >gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella tribocorum CIP 105476] gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella tribocorum CIP 105476] Length = 483 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 230/473 (48%), Positives = 301/473 (63%), Gaps = 8/473 (1%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +I +S+DSR + G++FVA+ G K DG +I AI +GA AIV L+D Sbjct: 14 KKLSSIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLEDL 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 S P+L V N R L+L A+R YG PE ++AVTGTSGK+SV SF++QI GL Sbjct: 74 S------VPVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGL 127 Query: 143 SSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG +S D LTTP P+ L + L +S +GVTH ++EASSHGLDQ RLDG Sbjct: 128 CAASIGTVGVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDG 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++L AG+FTNLGRDH+DYH+ + Y AKMRLF+ LLP +PA+I+ADD YSK+V+ Sbjct: 188 VRLTAGAFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVT 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A RVL++G +G FI + +V +KQ + VE K + F PL G+FQV NALVAAGL Sbjct: 248 QARRRVLTIGRKGHFITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGL 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 IA G+ V LE L PGR EFVG + +Y+DYAH +LE +L ++R T Sbjct: 308 AIATGLSPDKVFSALETLQGAPGRLEFVGKTEKNAPVYIDYAHKPEALEQVLLSVRPFTQ 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR+IVVFGCGGDRDQGKR +MGKIA D ADI IVTDDNPR+E+PEKIR +I+ +P IE Sbjct: 368 GRLIVVFGCGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPTAIE 427 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAI ++ +L D L++AGKGHE I+ + D E L Sbjct: 428 IADRGEAISYSVGLLKAGDTLIIAGKGHEDGQIIG-QKTYPFSDRLKAIEALE 479 >gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 499 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN-I 476 Query: 480 KKMSVDC 486 D Sbjct: 477 TLPFSDH 483 >gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] Length = 485 Score = 359 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 171/500 (34%), Positives = 267/500 (53%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ L+ K+ E+++ E +I+ ++ DSR ++ G +FVAI G K DGH FI Sbjct: 1 MKVDQLL-KNLSEIVD-----VKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAI GA ++ + + + + V N+RK LS +S +GK E N++ Sbjct: 55 GQAINNGAVVVIGEKEIN-------LPEDVLYIKVKNSRKALSEASSLFFGKPAERLNVI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I +G S+ +G I TTP + L + S + Sbjct: 108 GVTGTNGKTTTTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV +V++E SSH L HR+D +K G FTNL +DH+D+H + + Y+ +K +LF+ Sbjct: 168 VKEGVEYVTMEVSSHSLKLHRVDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFDL- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD + + + + + + V + + G Sbjct: 227 ---SRKAVINVDDESGERLCSELNIPVITYAI--EKNADVRAENVVIGSDGVSYEVCAGG 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + +PG F VYN+L A C+++GID + + LEK+ VPGRFE V + Sbjct: 282 ERRKITYKVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGRFEPV-DEGQDFT 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE +L ++T GRII VFG GGDRD+GKRP+MGK+ + +D I+T Sbjct: 341 VIVDYAHTPDGLENVLNTVKTFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIITS 400 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I +I G+ + + +R EAIR AIEM DV+++AGKGHE I Sbjct: 401 DNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKGHEDYQI 460 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + D ++ RE L Sbjct: 461 IGD-KVLHFDDREVAREFLR 479 >gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] Length = 493 Score = 359 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 188/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + I +S DSR +Q G +F A+ G+K G FI A+ GA A++ Sbjct: 8 LSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + A +++ ++V D R+ LS A+ YG P+ ++AVTGT+GK+SV++FV+ Sbjct: 68 AEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI GL++ +G T ++ TTP PI L + L+ S+ G+TH ++EASSHGL Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH+T AYF+AK LF +LP++ A+I DD Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +++ A GC V++VG G +HL Q + S GK + L G FQ N Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AAGL IA G D A V + L L V GR + T GG ++VDYAHT +++ L+ Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRA ++ Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI I+ + D L++AGKGHET + + + D + Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481 >gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] Length = 483 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 213/485 (43%), Positives = 296/485 (61%), Gaps = 9/485 (1%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + L N ++ P + +I+ ++ DSR + G++FVA+ G+K DG FI A A+GA Sbjct: 2 NLARLANGIAHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAV 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A++ SS ++ ++ P++ DN R + A+R Y K PE ++AVTGT+GK+S+ Sbjct: 62 AVLTSSDAVVE-------TDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSI 114 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVE 188 ASF++QI +GL + IG T +S D LTTP P+ LA+ L+ L +GVTH S+E Sbjct: 115 ASFLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASME 174 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHG+DQ RLDG++L AG FTNLG DH+DYH ++YF AKM LF LLPK +PA+I Sbjct: 175 ASSHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD +S ++ A GC V +VG G + LK++ +Q + + PL G Sbjct: 235 DDQWSGRAIEVATGVGCDVRTVGRNGSLLALKRLEHERERQVAEVKTPDGIQRVVLPLAG 294 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 EFQ+ NALVAAGL I G LE LE L GR E G + G ++VDYAH + Sbjct: 295 EFQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAGGVPVFVDYAHKPEA 354 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R T+GR+I+V GCGGDRD+ KRP+MG+IA LAD+ IVTDDNPRSEDP I Sbjct: 355 LEHVLRAVRPFTTGRVILVMGCGGDRDKTKRPMMGEIANRLADVVIVTDDNPRSEDPAVI 414 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 R+EI+ E G+R EAIR A+ D ++VAGKGHET +V + D + Sbjct: 415 RSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKGHETGQMVGS-INHPFSDHEE 473 Query: 489 IREIL 493 +R + Sbjct: 474 VRRAI 478 >gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] Length = 494 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S ++VV++ R+ L+ A+ +G PE ++AVTGT+GK+SVASFV+ Sbjct: 69 AAGAQIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T S++ TTP P+ L AL+ ++ GVTH ++EASSHGL Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD + Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A G V+SVG + L + Q + + K + L G FQ N Sbjct: 249 QMRAVAAARGHEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V + L L V GR + T G ++VDYAHT +++ +K Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P +E G+R EAI ++ L D L++ GKGHET IV + + D + Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482 >gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] Length = 494 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S ++VV++ R+ L+ A+ +G PE ++AVTGT+GK+SVASFV+ Sbjct: 69 AAGAQIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T S++ TTP P+ L AL+ ++ GVTH ++EASSHGL Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD + Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A G V+SVG + L + Q + + K + L G FQ N Sbjct: 249 QMRAVAAARGQEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V + L L V GR + T G ++VDYAHT +++ +K Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P +E G+R EAI ++ L D L++ GKGHET IV + + D + Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482 >gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] Length = 494 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 185/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S ++VV++ R+ L+ ++ +G PE ++AVTGT+GK+SVASFV+ Sbjct: 69 AAGAQIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP P+ L AL+ ++ GVTH ++EASSHGL Sbjct: 129 QIWIELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP++ A+I DD Sbjct: 189 DQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGP 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G V+SVG + L + Q + + K + L G FQ N Sbjct: 249 EMRAIAAARGQEVISVGRGAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V E L L V GR + T G ++VDYAHT +++ +K Sbjct: 309 ILLACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAVIRAAVKG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G PG +E G+R EAI ++ L D L++ GKGHET IV + D + Sbjct: 429 GAPGALEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGT-DVLPFDDVEQA 482 >gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] Length = 499 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 182/475 (38%), Positives = 274/475 (57%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + + I+ ++ DSR G +F A+ G++ G FIP A+ QGA AI+ Sbjct: 14 LSELGLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTD 73 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S+ +++V++ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+FV+ Sbjct: 74 AAGAKIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVR 133 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 134 QIWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGL 193 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +LP++ A+I +D+ Sbjct: 194 DQCRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGA 253 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G V+S+G I L + Q + + + + L G FQ N Sbjct: 254 EMRAVAAARGQEVISIGRGLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAEN 313 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D A V + L +L V GR E T G ++VDYAHT +++ +K Sbjct: 314 VLLACGLVIAGGEDPAAVFDTLPQLTTVRGRMEHAATRDNGASVFVDYAHTPDAVATAIK 373 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 374 ALRPHVLGRLVAIVGAGGDRDATKRPLMGRAAQENADVVIVTDDNPRSEDPAVIRAAVRG 433 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P +E G+R EAI ++ML+ D L++ GKGHE+ +V + D + Sbjct: 434 GAPDALEVGDRAEAILRGVDMLSTGDALLICGKGHESGQVVGT-DVLPFDDVEQA 487 >gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] Length = 483 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 219/494 (44%), Positives = 301/494 (60%), Gaps = 17/494 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L + + + I +S+DSR I G++FVA+ GN+ DG ++ Sbjct: 1 MLLGELFIECIKD---------DYFASIDITGISADSRQILPGYVFVALKGNQRDGREYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA IV + ++ P++ V N R L++ A+R Y PE ++AV Sbjct: 52 NDAIKRGARVIVTDHNFVFENSL------VPVVRVLNVRHSLAIAAARFYNSQPEIMVAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SV SF++QI + G + IG +S D LTTP P+ L + L +++ Sbjct: 106 TGTSGKTSVVSFIRQIWKYVGCCAASIGTVGVVSPKRHDLGSLTTPDPVMLQRLLCEIAN 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ R+DG++L A +FTNLGRDH+DYH+ + YF+AKMRLF LLP Sbjct: 166 EGVTHAALEASSHGLDQCRIDGVRLAAAAFTNLGRDHMDYHKCIEDYFHAKMRLFNTLLP 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 +++PA+I+ADD YS++V+ A +VL++G GKFI L +V KQ V + Sbjct: 226 QDAPALIFADDIYSQKVIDIVRRAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNNI 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F PL G+FQV NAL+AAGL IA +V LEKL PGR E VG G +Y Sbjct: 286 YTFDLPLVGDFQVANALMAAGLAIATRASPDMVFRSLEKLQGAPGRLELVGKTEDGAPVY 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T GR+I+VFGCGGDRDQGKR +MG IA + ADI IVTDDN Sbjct: 346 VDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGTIAGNKADIVIVTDDN 405 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR+E PEKIR +I+ +P IE +R EAI A+ +L D L+VAGKGHE I+ + Sbjct: 406 PRTEAPEKIRKDILQAVPEAIEIADRAEAIYYAVRLLKTGDTLIVAGKGHENGQIIG-QK 464 Query: 480 KKMSVDCDIIREIL 493 D + L Sbjct: 465 TYPFSDRLQVIAAL 478 >gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] Length = 494 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 267/482 (55%), Gaps = 2/482 (0%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 D + ++ L + R+ + ++ DSR ++ G++F A+ G+ G FI AI +GA Sbjct: 2 ADHRKTLSDLGLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 AI+ A + S+ +++ D+ R+ L+ A+ G P ++AVTGT+GK+S Sbjct: 62 TAILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTS 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V++F +QI G ++ +G T ++ TTP PI L + L+ +S GVTH ++E Sbjct: 122 VSTFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAME 181 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGLDQ RLDG++++A FTN +DH+D+H+T +AYF AKM LF +L +S A++ Sbjct: 182 ASSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNL 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD EV + A++ G V+ VG L Q + EGK + L Sbjct: 242 DDPKGPEVAEIAYDLGIDVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNLI 301 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G FQ N L+AA L IA G D+ V + L L V GR E T G ++VDYAHT + Sbjct: 302 GGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGAAVFVDYAHTPD 361 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ L +R GR+I + G GGDRD KRP+MG+ A+ AD+ VTDDNPRSEDP Sbjct: 362 AVATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGEAAMREADLVFVTDDNPRSEDPAV 421 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 IR ++ G P E G+R EAI ++ L D L++AGKGHET + + + D + Sbjct: 422 IRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKGHETGQTIGD-DVFPFNDVE 480 Query: 488 II 489 Sbjct: 481 QA 482 >gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] Length = 494 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 178/475 (37%), Positives = 266/475 (56%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR +Q G++F A+ G++ G F+ Q + QGA AI+ Sbjct: 9 LSQLGLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + A R+ ++V ++ R+ LS A+ +G P + AVTGT+GK+SV++F++ Sbjct: 69 TAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 129 MIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +L ++ A+I D Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A G +++VG I L + Q + + + F L G FQ N Sbjct: 249 KMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVAAGL IA G D V + L L V GR E T G ++VDYAHT +++ +K Sbjct: 309 VLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGATVFVDYAHTPDAIATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD IVTDDNPRSEDP IRA ++ Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGQAAHENADTVIVTDDNPRSEDPAAIRAAVMG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P + G+R EAI ++ML D L++ GKGHE+ + + D + Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEPGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482 >gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] Length = 492 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 185/479 (38%), Positives = 262/479 (54%), Gaps = 5/479 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + Q R+ I ++ DSR + G +F A+ G K G FI A+ GA A++ Sbjct: 4 LTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S+ ++V ++ R+ L+ AS +G HP ++AVTGT+GK+SV+SF + Sbjct: 64 AAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCR 123 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + GL+ +G T ++A + TTP PI L + L+ + G+THV++EASSHGL Sbjct: 124 QIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGL 183 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH T ++YF AKM LF +L ++ A++ DD Sbjct: 184 DQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGP 243 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V G V+ VG L Q + + +G+ L G FQ Sbjct: 244 VVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAE 303 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL IA G D V L +L V GR E T + G ++VDYAHT +++E L Sbjct: 304 NVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGAAVFVDYAHTPDAVETAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GRI+ + G GGDRD KRP+MG A + AD IVTDDNPRSEDP IRA ++ Sbjct: 364 KALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVL 423 Query: 434 H---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G E +R EAI I+ML D L++AGKGHE+ I+ + D + Sbjct: 424 AGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQIIGD-TIMPFDDVEQA 481 >gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] Length = 495 Score = 356 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 186/482 (38%), Positives = 268/482 (55%), Gaps = 8/482 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L + RE +I ++ DSR ++ G++F A+ G + G FI A+ A AI+ Sbjct: 4 LAELGLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTD 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++V + R+ L+ AS +G HP+ ++AVTGT+GK+SV++F + Sbjct: 64 AKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCR 123 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + L +G T ++ + TTP PI L + ++ + G+THV++EASSHGL Sbjct: 124 QIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGL 183 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A F+N +DH+DYH+T +AYF+AKM LF+ +L ++ A+I DD K Sbjct: 184 DQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGK 243 Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 EV G V+ VG + L Q + +G+ L G FQ Sbjct: 244 EVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAE 303 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A+GL IA G D V + L+ L V GR E T G ++VDYAHT +++E L Sbjct: 304 NVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGAAVFVDYAHTPDAVETAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GRIIV+ G GGDRD GKRP+MG A ADI IVTDDNPRSEDP IRA ++ Sbjct: 364 RAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDDNPRSEDPAAIRAAVM 423 Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G E G+R EAI I+ML D L++AGKGHET +V + D + Sbjct: 424 AGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKGHETGQVVGDAV-LPFDDVE 482 Query: 488 II 489 Sbjct: 483 QA 484 >gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] Length = 483 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 224/489 (45%), Positives = 309/489 (63%), Gaps = 13/489 (2%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L F E I +F M +I +++DSR + G++FVA+ GN++DG +I AI Sbjct: 2 LFGTVFTECIENSRLFSM-----EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIK 56 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+AIV L++FS P+L V + R L++ A+R YG PE ++AVTGTSG Sbjct: 57 RGAQAIVTDCNAVLENFS------VPVLRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV SF++QI GL + IG +S D TTP P+ L + L +S++GVTH Sbjct: 111 KTSVVSFLRQIWTHVGLCAASIGTVGIVSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTH 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH+ + Y AKMRLF+ LLP+++PA Sbjct: 171 AALEASSHGLDQSRLDGVRLTAAAFTNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPA 230 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +++ADD YS++V+ A R+L++G +GKFI + ++ KQ V VE + F Sbjct: 231 LVFADDIYSQKVIDIVTKARRRILTIGRKGKFITINRIEHQRLKQCVECRVENNIYTFDL 290 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G FQV NAL+AAGL IA G+ V LE L PGR E VG +Y+DYAH Sbjct: 291 PLAGNFQVTNALMAAGLAIATGVSPKKVFHSLEILQGAPGRLELVGKTENNAPVYIDYAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE +L ++R T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI IVTDDNPR+E Sbjct: 351 KPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEM 410 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 PEKIR +I+ P IE +R EAI A+ +L +D L++AGKGHE ++ + Sbjct: 411 PEKIRKDILQAAPRAIEIADRGEAISYAVGLLKAEDTLIIAGKGHENGQVIG-KKTYPFS 469 Query: 485 DCDIIREIL 493 D + + L Sbjct: 470 DRLKVIDAL 478 >gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] Length = 495 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 186/476 (39%), Positives = 269/476 (56%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L + M +E +I +S DSR ++ G +F A+ G G FI A+ QGA AI+ Sbjct: 10 LAELGLTAMGAQEAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTD 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + S +++ + R+ L+ A+ +G PE +AVTGT+GK+SVASF + Sbjct: 70 QKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTR 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP PI L + ++ ++ G+THV++EASSHGL Sbjct: 130 QIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGL 189 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG++L A FTN +DH+DYH +AYFNAK LF +L ++ A++ +DA + Sbjct: 190 EQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQ 249 Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + A G VLSVG I + Q V + F+ PL G FQ Sbjct: 250 DISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPLIGGFQAE 309 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL IA G D+ + L +L V GR E T G I+VDYAHT ++L Sbjct: 310 NVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGASIFVDYAHTPDALATAC 369 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GR+IVVFG GGDRD+GKRP+MG+ A AD+ VTDDNPRSEDP IR E++ Sbjct: 370 RALRPHVLGRLIVVFGAGGDRDKGKRPLMGQAAEAHADVIFVTDDNPRSEDPAVIRREVM 429 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G IE +R EAI ++ L DVL++AGKGHET ++ + + D + Sbjct: 430 DGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKGHETGQVIGD-DVLPFDDLEQA 484 >gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 234/495 (47%), Positives = 316/495 (63%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR + G +FVA+ G K DG FI Sbjct: 1 MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRKVAPGNVFVAVAGTKADGAGFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S A + P+ V R+FLS+ A+R +GK P+ ++AV Sbjct: 58 VDAAGRGAAVAIASQAIDA---------SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L + L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAYAGHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAG 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T ++Y AKMRLF+ LLP Sbjct: 169 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + +K A +AG + +VG +G ++ LK+V +KQ I + G+ Sbjct: 229 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+++ + + LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ E +R AIR A+ ML D L+VAGKGHE + +G Sbjct: 409 PRSEEPASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKGHEEGQTI-DGV 467 Query: 480 KKMSVDCDIIREILG 494 D +R L Sbjct: 468 TLPFSDHAEVRRALE 482 >gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] Length = 487 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 207/502 (41%), Positives = 290/502 (57%), Gaps = 27/502 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L D++ +D + + V++DSR + G +F A+ G DG FIP Sbjct: 5 RLSDILRRDL-------------DHDPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIP 51 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA+A+GA A++ D +A ++ ++ V + R+ +L A YG P+ +AVT Sbjct: 52 QALAKGAAAVLA-----PDDTAALESPDSLLVKVSDVRRAYALAAKAFYGSQPKICVAVT 106 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKAL 174 GT+GK+SVA+F +QI G S +G + S LTTP +A+ L Sbjct: 107 GTNGKTSVATFCRQIFSTLGKKSASMGTLGVVKSDIDGTETAVTGPGLTTPDAADMARHL 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S L++ GVTH+++EASSHG+DQ RLDG+ L A FTNL +DH+DYH T +AY AK+RLF Sbjct: 167 SELAADGVTHLALEASSHGIDQRRLDGVSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLF 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E LLP+ A++ AD +G V+SVG +G+ + + + Q + I Sbjct: 227 ESLLPRGRTAVLNADSDAYNSFAAMCVLSGTSVMSVGERGRGLAMVGRDLTVDGQILFIE 286 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G+ ++ PL G FQ NALVAAGLCIA G D V+ L L GR E VG Sbjct: 287 HQGRKYETKLPLAGLFQASNALVAAGLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRN 346 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAHT + LE +LK +R T G+++VVFGCGGDRD+GKRP MG IA LAD AI Sbjct: 347 AAEVYVDYAHTPDGLETVLKALRPHTQGKLVVVFGCGGDRDKGKRPQMGAIAARLADRAI 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 VTDDNPRSEDP IRAE++ G+ +E G+R +AI A+ L DVLVVAGKGHE Sbjct: 407 VTDDNPRSEDPATIRAEVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKGHEQGQ 466 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ + + D ++++ L + Sbjct: 467 IIGD-KVLPFDDVAVVQQALKV 487 >gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] Length = 493 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 184/477 (38%), Positives = 271/477 (56%), Gaps = 1/477 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + QL + R+ + ++ DSR ++ G++F A+ G++ G FI A+ GA AI+ Sbjct: 6 KTLFQLGLTARNGRQATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAIL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + + S +++ D+ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+F Sbjct: 66 TDAAGAQLAATELGASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATF 125 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V+QI G + +G T +++ TTP PI L +AL+ + QGVTH ++EASSH Sbjct: 126 VRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSH 185 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG+ L A FTN +DH+DYH T + YF AK LF +LP+++ A+I D Sbjct: 186 GLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADR 245 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 ++ A C V++VG +HL + Q V G + L G FQ Sbjct: 246 GVDMAAIAEARNCPVITVGRDSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQA 305 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N ++AA L IA G D V + LE L V GR + GT G ++VDYAHT +++ Sbjct: 306 ENVMLAAALVIACGEDPQHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATA 365 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK +R GR+I + G GGDRD KRP+MG+ A + AD+ VTDDNPRSEDP IRA + Sbjct: 366 LKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAV 425 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G P IE G+R EAI ++ L D L++AGKGHET +V + + D + Sbjct: 426 LLGAPDAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481 >gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] Length = 485 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 216/500 (43%), Positives = 285/500 (57%), Gaps = 29/500 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ +D + I V+SDSR + G +FVA+ G DG FIPQ Sbjct: 6 LSDLLRRDVA-------------SDPIITGVTSDSRKVAPGALFVALPGTAADGRAFIPQ 52 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVT 121 A+AQGA A++ + T S P+LV + R+ ++ A YG P +AVT Sbjct: 53 ALAQGAAAVLA--------PTDTPDSAAPVLVTSGDVRRAYAIAARGFYGAQPRTCVAVT 104 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------DNRLTTPSPIYLAKALS 175 GT+GK+SVA+F +QI G S +G + LT+P A+ ++ Sbjct: 105 GTNGKTSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMA 164 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 L+++ VTHV+VEASSHG+DQ RLDG+ L A +FTNL +DH+DYH T Y AKMRLFE Sbjct: 165 ELAAKDVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFE 224 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LLP+ A++ AD + AG V+ VG +G+ + L A Q++T+ V Sbjct: 225 ALLPRGRTAVLNADSDAYSAFAAASIMAGLGVMGVGERGRDLALIGRQATPEGQRLTLDV 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G D L PL G FQ NALVAAGLCIA G V+ LE L GR + + + Sbjct: 285 RGDVRDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGR 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 G +YVDYAHT + LE +L +R +GR+IVVFG GGDRD+GKRP+MG+IA LAD+AIV Sbjct: 345 GEVYVDYAHTPDGLETVLTALRPHATGRLIVVFGAGGDRDRGKRPLMGEIAGRLADVAIV 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA++ G P +E G+R AI AIEM+ DV+V+AGKGHE IV Sbjct: 405 TDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKGHEQGQIV 464 Query: 476 TNGEKKMSVDCDIIREILGL 495 G D + E L L Sbjct: 465 G-GTTHPFDDATVASEALSL 483 >gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] Length = 483 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 217/475 (45%), Positives = 303/475 (63%), Gaps = 8/475 (1%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + +I +S+DSR I G+IFVA+ G+++DG +I A+ +GA+AIV L Sbjct: 11 LEDENLSSMEITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVVL 70 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++ S P+L V + R L++ A+R YG PE ++AVTGTSGK+SV SF++QI + Sbjct: 71 ENLS------VPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTK 124 Query: 140 SGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 GL + IG +S D LTTP P++L + LS ++++GVTH ++EASSHGLDQ R Sbjct: 125 VGLCAASIGTLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCR 184 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LDG++L A +FTNLGRDH+DYH + + Y AKMRLF+ LLP+++ A+I+ADD YS++V+ Sbjct: 185 LDGVRLTAAAFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVID 244 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A VL++G +G+FI + ++ +KQ V +E + F PL G+FQV NAL+A Sbjct: 245 TLTQARRHVLTIGRKGQFITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMA 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AGL I+ GI V LE L PGR E VG +Y+DYAH +LE +L ++R Sbjct: 305 AGLAISTGISPDKVFRSLETLQGAPGRLELVGKTENNASVYIDYAHKPEALEQVLLSVRP 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI I+TDDNPR+E P KIR +I+ P Sbjct: 365 FTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQAAPK 424 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IE +R EAI A+ +L D L++AGKGHE I+ + D E L Sbjct: 425 AIEIADRGEAITYAVGLLKAGDTLIIAGKGHENGQIIG-QKTYPFSDRLKAIEAL 478 >gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2654] Length = 495 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 190/476 (39%), Positives = 264/476 (55%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + ++ +I +S DSR ++ G +F A+ G+K G FI A+ A AI+ Sbjct: 9 LSALGLRAKGGQDVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + S T ++V ++ R L+ A+ +G PE ++AVTGT+GK+SVASF + Sbjct: 69 REGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI GL + IG T +FA + TTP PI L + L+ +S GVTH ++EASSHGL Sbjct: 129 QIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RL+G+ L A FTN +DH+DYH + YF AK RLF +LP + A++ DD + Sbjct: 189 DQRRLEGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGR 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 E+ + A G V+S+G L QQ+ G+ L G FQ Sbjct: 249 ELEEIAQERGQEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAE 308 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N LVAAGL IA G D V L V GR + G I+VDYAHT ++L L Sbjct: 309 NVLVAAGLAIASGSDPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVDYAHTPDALATAL 368 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R G+++VVFG GGDRD KR +MGK A D AD+ IVTDDNPR+EDP IRA ++ Sbjct: 369 EALRPHVMGKLVVVFGAGGDRDTTKRKLMGKAAADYADVVIVTDDNPRTEDPAAIRAMVL 428 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P E G+R EAI ++ML+ D L++AGKGHET IV + + D + Sbjct: 429 EGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKGHETGQIVGD-DVLPFDDAEQA 483 >gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] Length = 483 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 166/499 (33%), Positives = 263/499 (52%), Gaps = 27/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ ++ + EL+ + +I E+ DSR++++G +FV I G DGH ++ Sbjct: 1 MNLKKILKEIKYELLKGND-------DLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A++ GA A++ S + ++ ++TRK L+L ++ Y + ++ Sbjct: 54 SSAVSNGAAAVICSKDIENL-------TECTVIKTEDTRKVLALASANYYDHPSDKLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + G +G + TTP + L K + + Sbjct: 107 GITGTNGKTTSTFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV + +E SSH L R+ G+K FTNL RDH+D+H+T + Y+NAK+ LF+ Sbjct: 167 VEEGVNYCIMEVSSHSLYLDRVYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNT 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ DD Y + V + + G + + + + + I+ + Sbjct: 227 LSS----VVNIDDEYGERVYEDSE--GKKTSYAIDKVADVKGSNLHMHSRGVEFDITYKN 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + +PG++ V NAL +A C+ G+ A V E LE + VPGR E V N G Sbjct: 281 ETQHINLNIPGKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGY 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE ILK R T G++I VFGCGGDRD KRPIMGKI +L+D A++T Sbjct: 341 EVIVDYAHTPDGLENILKTAREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVIT 400 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP I E++ G+ +I NR EAI+ A+EM K DV+VVAGKGHE I Sbjct: 401 SDNPRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKGHEDYQI 460 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + + ++I EI+ Sbjct: 461 LKD-KTIHFDEREVIAEII 478 >gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] Length = 482 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 168/499 (33%), Positives = 266/499 (53%), Gaps = 27/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M Q+LI + P++++ + + I + +S+ I+ G IFVAI G DGH FI Sbjct: 1 MNAQELI-QIIPDILS-----VKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 P+A+ +GA ++ A L + V ++RK L+L ++ YG ++ Sbjct: 55 PEALERGAGVVIGEKALDL--------GGKLYIRVKDSRKALALSSAWFYGYPADKLKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGTSGK++V + ++ + G+ + IG + ++ TTP + L + S + Sbjct: 107 GVTGTSGKTTVTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + ++++E SSH L R++GIK G FTNL +DH+D+H+T + YFN+K +LF + Sbjct: 167 VEENIEYLAMEVSSHSLKLQRVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQS 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD K ++ + R + + + + N + Sbjct: 227 KQ----AVINIDDESGKRLLSIINIP--RYTYGLDKKADLRAENIRMTANGVSYDLVFRN 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + + PG F VYN+L A +A+G ++ L+K VPGRFE V N++G Sbjct: 281 KIYPVFYSTPGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELV-ENNQGII 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAH + L+ +L IR +G+II VFGCGGDRD+GKRPIMGKI+ +L+D I+T Sbjct: 340 VIVDYAHKPDGLKNVLLTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITS 399 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPRSE PE I +I GI + + R EAI+ AI + K D +++AGKGHET I Sbjct: 400 DNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKGHETYQIF 459 Query: 476 TNGEKKMSVDCDIIREILG 494 + + D ++ +E L Sbjct: 460 ND-KIIHFDDREVAKECLS 477 >gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] Length = 484 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 230/495 (46%), Positives = 317/495 (64%), Gaps = 16/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL L + + ++ +SSDSR ++ G IF A+ G+K DG + Sbjct: 1 MKLRDL--------DGILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGSAYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AIV + ++ P+L VD+ R L+L A+R +G P+ ++AV Sbjct: 53 ADAARRGAVAIVTAKGSTVGGHP------IPVLAVDDPRLALALGAARFFGNQPQTMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +++G ++ IG T ++ + LTTP P+ L + L L+ Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLKELAD 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ LLP Sbjct: 167 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S ++ A AG VL+VG G F+ LK+V ++Q+ + G Sbjct: 227 KGAPAVIFADDPWSAPTIQAARAAGLEVLTVGRHGDFLRLKRVEHERHRQRAEVEANGVL 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQ+ NALV+AGL I+ GI +A L LEKL PGR + VGT + G +Y Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGIPTAKALMSLEKLKGAPGRLDLVGTTANGAPVY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPDALENVLTSVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE + + E Sbjct: 407 PRSEVPETIRAAIMAAAPGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKGHEEGQTIGS-E 465 Query: 480 KKMSVDCDIIREILG 494 D + +R L Sbjct: 466 TLHFSDHEEVRAALR 480 >gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella schoenbuchensis R1] Length = 483 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 217/470 (46%), Positives = 289/470 (61%), Gaps = 8/470 (1%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +I +SSDSR + G++FVA+ G + DG ++ AI +GA IV +L+ Sbjct: 16 LASIEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTDYNCALEGVY- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+L V + R L++ A+R YG PE + AVTGTSGK+SV SFV+QI + +G + Sbjct: 75 -----VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCA 129 Query: 145 FQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG +S D LTTP P+ L + L ++ +GVTH ++EASSHGLDQ RLDG++ Sbjct: 130 ASIGTVGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVR 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L A +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PAII+ADD YS++V+ A Sbjct: 190 LAAAAFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRA 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G VL++G GKFI + ++ KQ V + + F PL GEFQV NAL+AAGL I Sbjct: 250 GRPVLTIGRSGKFITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAI 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A + + V L+KL PGR E VG +YVDYAH +LE +L ++R T GR Sbjct: 310 ATNVPPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEALEQVLLSVRPFTLGR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 +I+VFGCGGDRDQGKRP+MGKIA ADI IVTDDNPR+EDP KIR +I+ G +E Sbjct: 370 LILVFGCGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAASGAMEIA 429 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI A+ +L D L++AGKGHE I+ D L Sbjct: 430 DRGEAIDYAVRLLEAGDTLIIAGKGHENGQIIG-KTTYPFSDHLRAVSAL 478 >gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] Length = 493 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 178/479 (37%), Positives = 263/479 (54%), Gaps = 2/479 (0%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 + + L + R+ I ++ DSR ++ G++F A+ G G FI A+ QGA AI Sbjct: 4 IKTLAALGLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + + + S+ ++V ++ R+ L+ A+ +G PE ++AVTGT+GK+SVA+ Sbjct: 64 LTDATGARLAQDFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVAT 123 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 F +QI +R GL++ +G T +++ TTP PI L + L+ GVTH ++EASS Sbjct: 124 FTRQIWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL Q RLDG+ L+A FTN +DH+DYH + YF AK LF +LP++ A+I DD Sbjct: 184 HGLAQRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDP 243 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 E+ A G +++VG G + L Q + E + L G F Sbjct: 244 RGAEMAAIATERGQDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGF 303 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L+AAGL I G D+ V E L + V GR + T G ++VDYAHT +++ Sbjct: 304 QAENVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGAAVFVDYAHTPDAVA 363 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +K +R GR+I + G GGDRD+ KRP+MG+ A AD IVTDDNPRSE+P IRA Sbjct: 364 TAIKALRPHVMGRLIAIVGAGGDRDRAKRPLMGQAAAAHADRVIVTDDNPRSENPASIRA 423 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G P + G+R EAI ++ L D L++ GKGHET IV + + D + Sbjct: 424 AVMQGCPKATDVGDRAEAILRGVDALGPGDALLICGKGHETGQIVGD-DVLPFNDVEQA 481 >gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] Length = 485 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 195/486 (40%), Positives = 284/486 (58%), Gaps = 11/486 (2%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + +L+ + P ++ ++ DSR ++ G +F A+ G K DG FIP AI +GA Sbjct: 3 RTLADLLPETLSAPQGADGVEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 I+ + + P++ ++ + LS A+ Y + P I A+TGT+GKSS Sbjct: 63 VCILA---------PKGVTAPVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSS 113 Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 F++QI ++G+ + +G T +S D TTP I L K+L L+ +GVTH+++ Sbjct: 114 TVEFLRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAM 173 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL Q R+DG++L FTNL +DH+DYH + YF++KMRLF L P +PA+I Sbjct: 174 EASSHGLKQRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVIN 233 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D +S+ V + A +AG + +G++G+ + + ++ Q V S +G++ + PL Sbjct: 234 MDSDWSQRVAQAAQSAGLSPVEIGWRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLI 293 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GEFQ NAL AA + IA G+ E + +L V GR + VGT G + +DYAHT + Sbjct: 294 GEFQAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLDYAHTPD 353 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +L+ R T GRII+VFG GGDRD KR MG+IA L+D+AIVTDDNPRSEDP Sbjct: 354 GLDKLLRAARPHTQGRIILVFGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPRSEDPAG 413 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 IR I+ PG E G+R AIR IEML DVL+VAGKGHET I+ + + + Sbjct: 414 IRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKGHETGQILAD-RIIPFDETE 472 Query: 488 IIREIL 493 I+ IL Sbjct: 473 IVTRIL 478 >gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] Length = 503 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 185/482 (38%), Positives = 264/482 (54%), Gaps = 8/482 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + RE I +S DSR ++ G +F A+ G K G FI A+ GA AI+ Sbjct: 12 LAALGLRGQGGREATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTD 71 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + + S +++ ++ R L+L AS +G HPE ++AVTGT+GK+SV++F + Sbjct: 72 AQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI L++ +G T ++ + TTP PI L + L++ S +THV+VEASSHGL Sbjct: 132 QIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHGL 191 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN DH+DYH+T +AYF+AKM LF LLP++ A+I DD Sbjct: 192 DQRRLDGVVLSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPKGP 251 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 EV++ A N G ++VG L Q++ + L G FQ Sbjct: 252 EVVQIAQNRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQAD 311 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A L IA G D V + L L V GR + T GG ++VDYAHT +++ L Sbjct: 312 NVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R G++I + G GGDRD GKRP+MG+ A AD+ VTDDNPRSEDP IRA ++ Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAAQNADMVFVTDDNPRSEDPATIRAAVM 431 Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G IE G+R EAI ++ L D L++AGKGHE+ I+ + + D + Sbjct: 432 VGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490 Query: 488 II 489 Sbjct: 491 QA 492 >gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] Length = 498 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 169/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ + L + +I ++++S + G +F+ + G + DG F Sbjct: 1 MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117 P AIA GA A +VS + + T P ++ + + A+ Y + + Sbjct: 55 PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTTACAEIATAFYNHPAQTLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ + + +G T Q+ TTP + L L+ Sbjct: 115 VGVTGTNGKTTTTHLIEFLLSNLDQPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G +E SSH L Q R+ G FTNL +DH+DYH T YF AK LF + Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII ADD Y K++M R + SV I + + + Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGSDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTP 293 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355 F PL G++ + N L A G +A+G+D + +++ L VPGR E V + + Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQD 353 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP I G+R +AIRTAI+ D +++AGKGHE Sbjct: 414 TSDNPRTEDPDRILQDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ EK D + R+ L Sbjct: 474 QIIGT-EKVHFDDREQARDAL 493 >gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] Length = 1015 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 214/497 (43%), Positives = 289/497 (58%), Gaps = 15/497 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ PE I V+ DSR ++ G +F+A+ G+ +DG F+ Sbjct: 1 MRLNDLLGGGLPEASRD------DVGALDITNVTVDSRKVKPGGLFIAVSGSAQDGAKFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ GA A++ + S P+L N RK L+ ASR + + PE I AV Sbjct: 55 PMAVENGAVAVLADRDADIGKIS------VPVLRNGNIRKALANIASRFHPRQPEIIAAV 108 Query: 121 TGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLS 178 TGT+GK+SVASF++QI + IG T + D LTTP P+ L + L L+ Sbjct: 109 TGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDELA 168 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GVTH ++EASSHGLDQ RLDG++L FTNLGRDH+DYH + Y AK+RLF +LL Sbjct: 169 GEGVTHCAMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDLL 228 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 PA+IYADD +S V+ A G V +VG +G+FI +K++ Q + +G+ Sbjct: 229 KPGQPAVIYADDEFSGRVIDHAEFHGLDVKTVGREGEFIAVKRIEQHRTSQVAEVVCDGE 288 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PL GEFQ+ NALVAAG+ IA G+++ L L GR E +G + G Sbjct: 289 TYRVELPLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAAC 348 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAH +LE +L +R T+G++++VFGCGGDRD GKR IMG+IA +AD IVTDD Sbjct: 349 YVDYAHKPEALENVLAALRPYTTGQLVLVFGCGGDRDPGKRAIMGEIAARMADRVIVTDD 408 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPRSE+P IRA I+ P E G+R EAI A+E L D L+VAGKGHE IV + Sbjct: 409 NPRSENPGSIRAAIMEAAPDATEIGDRYEAIINAVEGLGSGDTLIVAGKGHEEGQIVGD- 467 Query: 479 EKKMSVDCDIIREILGL 495 D ++RE L L Sbjct: 468 TVLPFSDHAVLREALAL 484 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 86/462 (18%), Positives = 158/462 (34%), Gaps = 42/462 (9%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 P E I +S D+R +Q G + AI G+ DGH F+ A A GA VV+ + Sbjct: 555 GWLPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHAAGATVSVVAKDWV 614 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + R +LVVD+ L + ++A+TG+ GK++ ++ Sbjct: 615 GRLEGDCGR----LLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTTKEMLRTGLA 670 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + + P+ LA+ + + + + G Sbjct: 671 ACGHVHAAVASFNNHWGV----------PLTLARMPAD---SDFAVIEIGMNHPGEITPL 717 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + N+ H+ + +A + L A++ ADD ++ Sbjct: 718 VQMTRPHVAIINNVAAVHLGAFDSVDEIAHA-KSEIFDGLIPGGTAVLNADDERLPIMLD 776 Query: 259 RAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 RA A + L+K+ + + ++ +V G+ PG NAL Sbjct: 777 RATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNAL 836 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL 373 V + D A V L ++ V GR + + +G + +D Y S+ L Sbjct: 837 VVLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASL 896 Query: 374 K---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSEDPE 426 + GR I V G + + IA ++D + + R+ Sbjct: 897 DLLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRA---- 952 Query: 427 KIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVV 464 + + G + I AI + + DV++V Sbjct: 953 --LRDTLMNTKGVHVTWCDTADEIGAILA--DEIRSGDVVMV 990 >gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] Length = 493 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 182/477 (38%), Positives = 272/477 (57%), Gaps = 1/477 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++QL + R+ + ++ DSR ++ G++F A+ G++ G FI A+ GA AI+ Sbjct: 6 KTLSQLGLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAIL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + + S+ +++ D+ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+F Sbjct: 66 TDIVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTSVATF 125 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V+QI G + +G T +++ TTP PI L +AL+ + +GVTH ++EASSH Sbjct: 126 VRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAMEASSH 185 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG+ L A FTN +DH+DYH T + YF AK LF +LP+++ A+I D Sbjct: 186 GLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVDR 245 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 ++ A C V++VG +HL + Q V GK + L G FQ Sbjct: 246 GVDMAAIAKARNCPVITVGRDSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLIGGFQA 305 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N ++AA L IA G + V + LE L V GR + GT G ++VDYAHT +++ Sbjct: 306 ENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATA 365 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK +R GR+I + G GGDRD KRP+MG+ A + AD+ VTDDNPRSEDP IRA + Sbjct: 366 LKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPATIRAAV 425 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G P IE G+R EAI ++ L D L++AGKGHET +V + + D + Sbjct: 426 LLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481 >gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 488 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 152/502 (30%), Positives = 254/502 (50%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++LI + + ++ I + DSR ++ G++FV I G DGH FI Sbjct: 3 MVLRELIKDLKEKRVEGR-------QDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P+AI +G+ +VV + ++ V NTR L++ A+R YG + ++ Sbjct: 56 PEAIKRGSRVVVVEKDVK-------TAKDVTVIKVPNTRYALAVLANRFYGYPSKKLQVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 + GT+GK++ V+ + +++G G + TTP + L L+ L Sbjct: 109 GIAGTNGKTTTTYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNEL 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ +V +E S+H R+ G + G FTN+ RDH+D+H+T + Y A+++ F L Sbjct: 169 VNKEFEYVVMEVSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLL 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD Y++ ++K + + I + + + Sbjct: 229 SRTGRRAVINIDDPYAEHIIK-NTRTEILTYGINDKNADIRAFDIKVSKTGSRFNVITPL 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F LPG + VYNAL A G+ I+ G++ + E + VPGRFE + + Sbjct: 288 GETVFYLRLPGRYNVYNALAAVGVGISEGLNLNEIREAIAHA-SVPGRFERIDCG-QSFD 345 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L+ L+ R ++ GRIIVVFGCG D+D +RP+MG +A ++DIAI+T Sbjct: 346 VIVDYAHTPDALQKALETARGLSEGRIIVVFGCGDDKD--RRPLMGVVAARMSDIAILTS 403 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DN R+E+P +I ++I GI ++ +R EAI A+EM + D++++AGKGHE Sbjct: 404 DNSRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEE 463 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + K D + IL Sbjct: 464 YQIIKD-RKIPFNDRKVAERIL 484 >gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] Length = 497 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 180/482 (37%), Positives = 267/482 (55%), Gaps = 2/482 (0%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + + +L + + + +S DSR + G +F A+ G G FI A+ +GA Sbjct: 5 NAMRKSLTELGLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ + + + ++V ++ R+ LS A+ YG PE ++AVTGT+GK+S Sbjct: 65 AAVLTDAEGAALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTS 124 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 VASF +QI G + +G T ++ TTP PI L + L+ + GVTH ++E Sbjct: 125 VASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGL Q RLDG++L A FTN +DH+DYH + YF+AK LF +LP++ A+I Sbjct: 185 ASSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINI 244 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD E+ + A + G +L VG + + + + Q + EG+ + PL Sbjct: 245 DDPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLI 304 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G FQ N L+AAGL IA G D + V + L ++ V GR E T G ++VDYAHT + Sbjct: 305 GGFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGAAVFVDYAHTPD 364 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ ++ +R GR+I + G GGDRD GKRP+MG+ A + AD IVTDDNPRSEDP Sbjct: 365 AVGTAIRALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSEDPAL 424 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 IRA ++ G P +E G+R EAI ++ML D L++ GKGHET V + + DC+ Sbjct: 425 IRAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKGHETGQTVGD-DVLPFDDCE 483 Query: 488 II 489 Sbjct: 484 QA 485 >gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella bacilliformis KC583] gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella bacilliformis KC583] Length = 483 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 224/471 (47%), Positives = 292/471 (61%), Gaps = 8/471 (1%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 KI +S++SR I G++FVA+ GNK DG +I AI +GA +V + ++ S Sbjct: 15 NLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+L V + R L+L A+R Y PE +LAVTGTSGK+SV SF++QI Q G Sbjct: 75 ------VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFC 128 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG +S D LTTP P+ L + L L+ +GVTH ++EASSHGLDQ RLDG+ Sbjct: 129 AASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 L A +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PA+I ADD YS+EV+ Sbjct: 189 NLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQ 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 AG R L++G +G+FI + ++ +KQ V +E + F PL G FQV NAL+AAGL Sbjct: 249 AGRRALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I G S V L+KL PGR E V +YVDYAH +LE +L R T G Sbjct: 309 ITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 R+IVVFGCGGDRDQGKRP+MGKIA+D ADI IVTDDNPR+E+PEKIR +I+ PG +E Sbjct: 369 RLIVVFGCGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEI 428 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI A+ +L D L++AGKGHE +V E + D L Sbjct: 429 ADRSEAIYYAVGLLEAGDTLIIAGKGHENGQVVG-QETRPFSDRLEAISAL 478 >gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrospira platensis str. Paraca] Length = 498 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 170/501 (33%), Positives = 250/501 (49%), Gaps = 16/501 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ + L + +I ++++S + G +F+ + G + DG F Sbjct: 1 MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117 P AIA GA A +VS + + T P ++ + K + A+ Y + + Sbjct: 55 PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ + + +G T Q+ TTP + L L+ Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G +E SSH L Q R+ G FTNL +DH+DYH T YF AK LF + Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII ADD Y K++M R SV I + Q + Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTP 293 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355 F PL G++ + N L A G +A+G+D + +++ L VPGR E V + + Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQN 353 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +++ GIP I G+R +AIRTAI D +++AGKGHE Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKGHEDY 473 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ EK D + R+ L Sbjct: 474 QILGT-EKVHFDDREQARDAL 493 >gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 498 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 153/509 (30%), Positives = 244/509 (47%), Gaps = 32/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+ L ++ + +++DSR ++ G +FVA+ G+ DGH F Sbjct: 1 MRLRQLFQPF-------VNFQVTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA+ +GA A++V + + ++ P +VV +TR + +L A RL+G ++ Sbjct: 54 RQAVERGAVAVMVEEPVAE------VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V V+ + +G + IG + TTP + + + L Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRF 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 G TH +E SSH L + R G+ +FTNL +DH+D+H T + Y AK Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRL 227 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + A+I DD +S + + + + + + V + + Sbjct: 228 GNGTGDDPARSVYAVINVDDPWSSVMAEASAAPILTYGI--ERAGDVRARDVRLSASGAR 285 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + F+ PL G F VYN L A + + G+ + E + VPGR E + Sbjct: 286 FFVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLTPTEIQEGIRSYPSVPGRMERI- 344 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + ++VDYAHT + LE +L ++R R++VV GCGGDRD+ KRP M ++A+ LA Sbjct: 345 DEGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLA 404 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D AI T DNPRSEDP I A++ G+ E+ +R AI AI DV+V+A Sbjct: 405 DRAIFTSDNPRSEDPVAILADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIA 464 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKGHE I+ EK+ D + R + Sbjct: 465 GKGHEDYQIIGA-EKRHFDDREEARRAIR 492 >gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Arthrospira platensis NIES-39] Length = 498 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 170/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ + L + +I ++++S + G +F+ + G + DG F Sbjct: 1 MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117 P AIA GA A +VS + + T P ++ + K + A+ Y + + Sbjct: 55 PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ + + +G T Q+ TTP + L L+ Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G +E SSH L Q R+ G FTNL +DH+DYH T YF AK LF + Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII ADD Y K++M R SV I + Q + Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTP 293 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355 F PL G++ + N L A G +A+G+D + +++ L VPGR E V + + Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQN 353 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +++ GIP I G+R +AIRTAI+ D +++AGKGHE Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ EK D + R+ L Sbjct: 474 QILGT-EKVHFDDREQARDAL 493 >gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. AR 15-3] Length = 484 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 212/495 (42%), Positives = 298/495 (60%), Gaps = 18/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L + + +I +S+DSR + G++FVA+ GN+ DG ++ Sbjct: 1 MLLGELFIECIKD---------DYLASIEITGISADSRQVLPGYVFVALKGNQRDGREYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA I+ + + ++ S P++ V R L++ A+R Y PE ++AV Sbjct: 52 NDAIKRGARVIITDNNFVFENLS------IPVIHVSEVRHRLAIAAARFYNSQPEIMVAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGTSGK+SV SF++QI + G + IG +S D LTTP P+ L + L +++ Sbjct: 106 TGTSGKTSVVSFIRQIWEYVGFCAASIGTVGVVSPKRHDIGFLTTPDPVMLQRLLYEIAN 165 Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 VTH + EASSHG+DQ R+DG+ L A +FTNLGRDH+DYH + YF+AKMRLF +L Sbjct: 166 DEGVTHAAFEASSHGIDQCRIDGVHLAAAAFTNLGRDHMDYHGCIEDYFHAKMRLFNTIL 225 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P+++PA+I+ADD YS++V+ A +VL++G GKFI L +V KQ+V + Sbjct: 226 PQDAPALIFADDVYSQKVIDIVRQAHRKVLTIGRTGKFITLNRVEHQRLKQRVECRMGNN 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + F P G+FQV NAL+AAGL IA +V LEKL PGR E VG G + Sbjct: 286 IYTFDLPFSGDFQVANALMAAGLAIATNAPPDMVFRSLEKLQGPPGRLELVGKTKDGAPV 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAH +LE +L ++R T GR+I+VFGCGGDRD+GKR +MGKIA + AD+ IVTDD Sbjct: 346 YVDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDRGKRALMGKIAENKADVVIVTDD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPR+E PEKIR +I+ +P IE +R +AI A+ +L D L+VAGKGHE I+ Sbjct: 406 NPRTEAPEKIRKDILQVVPEAIEIADRGKAIDYAVRLLKAGDTLIVAGKGHENGQIIGR- 464 Query: 479 EKKMSVDCDIIREIL 493 E D + L Sbjct: 465 ETYPFSDRLKVIAAL 479 >gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. 1-1C] Length = 484 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 220/495 (44%), Positives = 304/495 (61%), Gaps = 18/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L + + +I +S+DSR + G++FVA+ GN+ DG ++ Sbjct: 1 MLLGELFVECIKDDC---------LASIEITGISADSRQVLPGYVFVALKGNQSDGKKYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA I+ + + ++ S P++ V + R L++ A+R Y PE ++AV Sbjct: 52 NDAIQRGARVIITDNNFVFENLS------IPVIHVLDARHKLAIAAARFYNSQPETVVAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SV SFV+QI + G + IG +S D LTTP P+ L + L +++ Sbjct: 106 TGTSGKTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIAN 165 Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 VTH + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF LL Sbjct: 166 DEGVTHAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLL 225 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P+++PA+I+ADD YS++V+ A +VL++G GKFI L +V KQ+V + Sbjct: 226 PQDAPALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQRVECRMGNN 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + F PL G+FQV NAL+AAGL IA S +V LEKL PGR E VG G I Sbjct: 286 IYTFDLPLAGDFQVTNALMAAGLAIATNAPSDMVFRSLEKLQGAPGRLELVGNTEDGAPI 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAH +LE +L ++R T GR+++VFGCGGDRDQGKR +MGKIA + ADI IVTDD Sbjct: 346 YVDYAHKPEALEQMLLSVRPFTQGRLVLVFGCGGDRDQGKRALMGKIAGNKADIVIVTDD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPR+E PEKIR +I+ +P IE +R +AI A+E+L D L+VAGKGHE I+ Sbjct: 406 NPRTEAPEKIRKDILQAVPEAIEIADRGQAIEYAVELLKAGDTLIVAGKGHENGQIIG-Q 464 Query: 479 EKKMSVDCDIIREIL 493 E D + L Sbjct: 465 EIYPFSDRLKVIAAL 479 >gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] Length = 494 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 176/475 (37%), Positives = 261/475 (54%), Gaps = 1/475 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR + G++F A+ G + G F+ Q + QGA AI+ Sbjct: 9 LSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + A + ++V ++ R+ LS A+ +G P + AVTGT+GK+SV++F++ Sbjct: 69 AKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 129 MIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +L ++ A+I D Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G +++VG I L + Q + + + F L G FQ N Sbjct: 249 EMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVAAGL IA G D V + L L V GR + T G ++VDYAHT +++ +K Sbjct: 309 VLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG A D AD IVTDDNPRSEDP IRA ++ Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P + G+R EAI ++ML D L++ GKGHE+ + + D + Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482 >gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] Length = 1257 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 212/494 (42%), Positives = 302/494 (61%), Gaps = 6/494 (1%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL + E+ + P I+ +++DSR ++ G++F A+ G K DG FI Sbjct: 1 MLLKDLTKQ---EIDSAAGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ GA AI + A + D P++ ++ R+ L+L A+ G+ PE ++AV Sbjct: 58 EQAVDAGAAAI-LIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAV 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVA FV+QI + +GL S +G T++S Q LTTP P+ L + L L+ Sbjct: 117 TGTAGKTSVAVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAE 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH ++EASSHGLDQHRLDG++++A FTNLGRDH+DYH T + Y AK+RLF +LLP Sbjct: 177 DGITHAAMEASSHGLDQHRLDGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLP 236 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +I + ++ V++ A G + + G+ G+ + ++ V Q + + Sbjct: 237 DDGVVVIDPEAQFADRVLEVAKERGLKTFTTGFFGEDLKVRSVQPEGFSQVLELETAEGV 296 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F PL G+FQV NAL+AAGL IA G+ LE L L PGR E VGT G ++ Sbjct: 297 FSVALPLAGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPGRIEHVGTRENGALVF 356 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L +R GR+I VFGCGGDRD GKRP+MG+I+ LAD++IVTDDN Sbjct: 357 VDYAHKPEALENVLAALRPFAPGRLISVFGCGGDRDAGKRPLMGEISARLADVSIVTDDN 416 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR+E+P+ IR EI+ P +E G+R AIR A++ML + DVL VAGKGHET IV E Sbjct: 417 PRTENPDSIREEIVAACPAALEIGDRALAIRQAVKMLQEGDVLCVAGKGHETGQIVGT-E 475 Query: 480 KKMSVDCDIIREIL 493 D + I++ L Sbjct: 476 VLPFSDHEEIQKAL 489 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 162/475 (34%), Gaps = 44/475 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + DF E ++ + I +S DSR IQ G F AI G DGH F A+ Sbjct: 788 LLSDFLEAVDG--DVHGDLAD-DITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVEA 844 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA VVS + + VD+ K L + I+AVTG+ GK Sbjct: 845 GASVAVVSRE-----KLGELPEGGRYVAVDDVLKALERLGVAARARSKARIIAVTGSVGK 899 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ +SG++ + + P+ LA+ + Sbjct: 900 TGTKEALRLCLSKSGITHAPVASFNNHWGV----------PLTLARMHAD---TEFGIFE 946 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAI 245 + + G + ++ T + H++ + + AK +F + P + Sbjct: 947 IGMNHRGEITPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILN 1006 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + V G KKV + + ++ G++ + Sbjct: 1007 RDNRQYDLLRYLAAVAGVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIG 1066 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--Y 362 PG V N+L + +G + A L ++ GR + V + G + VD Y Sbjct: 1067 APGAHHVINSLGVLTGVMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESY 1126 Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIV 415 S+ + + + +GR I V G + + +A +L DI Sbjct: 1127 NANPASMRAAINLVAGLPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYC 1186 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K+ E + + E +++E + + + D+++V KG Sbjct: 1187 VGTH------MKVLWERLPAQTRGAYSETSDKLE--KDLLSEVRPNDIVMV--KG 1231 >gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] Length = 496 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 158/504 (31%), Positives = 252/504 (50%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L ++ +I +V++DSR ++AG +F+A+ G DGH ++ +AI G Sbjct: 4 KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAG 63 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS + + ++ V++TR + + + ++ VTGT+G Sbjct: 64 AVAVLVSKPVDVSG-------DVCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + ++ I + G IG + + TTP + L L + +GVT+ Sbjct: 117 KTTTSHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTY 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 177 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVK 236 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DDAY V+++ G ++ V + T+S +G D Sbjct: 237 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 294 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + L+ VPGRFE + + + Sbjct: 295 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 353 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DN Sbjct: 354 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 413 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 414 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKGHEDY 473 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 474 QILKD-KTIHFDDREEARAALKEI 496 >gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium novyi NT] gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium novyi NT] Length = 483 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 170/499 (34%), Positives = 271/499 (54%), Gaps = 26/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ +L+ E++N E +++ + DSR I +FVAI G DGH FI Sbjct: 1 MKVNELLKGLEYEILNG-------DLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI +GA+ IV S I+ + V+NTRK L++ AS LY + ++ Sbjct: 54 EKAINEGAKVIVCSKEIE-------IKKGITYIKVENTRKALAIMASNLYNNPSKDIKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G S+ IG + I + TTP + L + + Sbjct: 107 GITGTNGKTTSTYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + +E SSH L R+ G++ G FTNL +DH+D+H+T + Y+ AK+ +F+ Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II DD Y + ++ ++ ++ + + K + + + + Sbjct: 227 KNS----IINIDDTYGERILNDVPDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKD 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 K+ +PG + VYNAL +AG C++ GI V + LE + V PGR E + G Sbjct: 283 KETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVV-PGRCENATKDYDLGF 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT + LE IL+ R T GR+I VFGCGGDRD+ KRPIMGKI D++DIAI+T Sbjct: 342 DVIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+P +I +++ GI +I NR EAI+ AIE+ + DV+VVAGKGHE I Sbjct: 402 SDNPRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKGHEDYQI 461 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + + ++I +I+ Sbjct: 462 LKD-KTIHFDERELIADII 479 >gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] Length = 482 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 206/480 (42%), Positives = 281/480 (58%), Gaps = 10/480 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ P +I +++DSR ++ G++F A+ G K DG FI QAI +GA A++V Sbjct: 4 LMGSGPALPEGGA-TEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLV 62 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 A + +N P++ N R+ L+L A+ +G P + AVTGT+GK+S+A+F+ Sbjct: 63 -------PLDAAVAANVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFL 115 Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++I G + +G S+ + TTP P+ L L+ L+ +GVTH+++EASSH Sbjct: 116 REIWAALGEEAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSH 175 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q+RLDG+KL A FTN+ RDH+DYH + Y AK+RLF E++ A++ AD A Sbjct: 176 GLAQYRLDGVKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQ 235 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E G R++SVG +GK I L Q + + EGK++ PL G FQ Sbjct: 236 YAEFEAVCWARGHRIISVGRKGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQA 295 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NALVAAGL I G + V LEKL GR E G +Y+DYAHT ++LE Sbjct: 296 SNALVAAGLAIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGASVYIDYAHTPDALENA 355 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ IR T+GR+ +VFGCGGDRD GKRP+MG A LADI VTDDNPRSE + IRA + Sbjct: 356 LEAIRPHTAGRLSIVFGCGGDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIRAAV 415 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G PG IE G+R AI TA+ L DVLVVAGKGHET IV + + D + IRE Sbjct: 416 LKGCPGAIEIGDRAAAIETAMRALQPGDVLVVAGKGHETGQIVGD-KVLPFSDHEAIREA 474 >gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella rochalimae ATCC BAA-1498] Length = 484 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 218/495 (44%), Positives = 301/495 (60%), Gaps = 18/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L + + +I +S+DSR + G++FVA+ GN+ DG ++ Sbjct: 1 MLLGELFIECIKDDC---------LASIEITGISADSRQVLPGYVFVALKGNQSDGKKYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA I+ + + ++ S P++ V + R L++ A+R Y PE ++AV Sbjct: 52 NDAIQRGARVIITDNNFVFENLS------IPVIHVLDVRHKLAIAAARFYNSQPETVVAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SV SFV+QI + G + IG +S D LTTP P+ L + L +++ Sbjct: 106 TGTSGKTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIAN 165 Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 VTH + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF LL Sbjct: 166 DEGVTHAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLL 225 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P+++PA+I+ADD YS++V+ A +VL++G GKFI L +V KQ V + Sbjct: 226 PQDAPALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNN 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + F PL G+FQV NAL+AAGL IA +V LEKL PGR E VG G + Sbjct: 286 IYTFDLPLAGDFQVTNALMAAGLAIATNAPPDMVFRSLEKLQGAPGRLELVGNTEDGAPV 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAH +LE +L ++R T GR+I+VFGCGGDRDQGKR +MGKIA + ADI IVTDD Sbjct: 346 YVDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGKIAGNKADIMIVTDD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPR+E PEKIR +I+ +P IE +R +AI A+ +L D L+VAGKGHE I+ Sbjct: 406 NPRTEAPEKIRKDILQAVPEAIEIADRGQAIEYAVGLLKAGDTLIVAGKGHENGQIIG-Q 464 Query: 479 EKKMSVDCDIIREIL 493 E D + L Sbjct: 465 EIYPFSDRLKVIAAL 479 >gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium kluyveri DSM 555] gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016] gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555] gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 485 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 166/500 (33%), Positives = 247/500 (49%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D++ ++I + I E+ DSR ++ G +FV I G DGH +I Sbjct: 1 MNLKDVLRGIDYKIIKGKN-------NLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 A GA AIV+S + ++ V +TRK L+L +S Y I+ Sbjct: 54 ESAFKNGAAAIVLSKKVDFI-------PDCTVIEVKDTRKALALMSSNYYDNPAEDMKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ I + +G +G S + + TTP + L K + Sbjct: 107 GITGTNGKTTSTFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +EASSH L R+ G++ FTNL RDH+D+H+T + Y+ +K + Sbjct: 167 VDDGVDYCVMEASSHSLYLDRVYGVEFCQALFTNLTRDHLDFHKTFEEYYKSK------I 220 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + G ++ + + + IS EG Sbjct: 221 ILFKNTVNSVINIDDKYGERVYEDAKGKKLTYAIDKNADLMADNLKIHSRGVNFNISYEG 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 +PG++ V NAL +AG+C+A GID V + LE + VPGR E V + G Sbjct: 281 NTKHINLNIPGKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGY 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE ILK R T G++I VFGCGGDRD KRPIMG I +D A+VT Sbjct: 341 EVVVDYAHTPDGLENILKCAREFTKGKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVT 400 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR E+P I +I+ GI +I NR EAI+ A+EM DV+V+AGKGHE I Sbjct: 401 SDNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQI 460 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + +I+ EI+ Sbjct: 461 LKD-RTIHFDEREIVAEIIE 479 >gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] Length = 507 Score = 349 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 165/520 (31%), Positives = 253/520 (48%), Gaps = 38/520 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E + + V+ DSR ++ G +FVAI G KEDG FI Sbjct: 1 MKLTDVLAGCGAEQTSGGRSA------VDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+++GA A+V S P V + RK L+L A+ YG+ + + L Sbjct: 55 GEAVSRGAVAVVSEKPVP--------SSQVPFFKVSSARKALALIAANFYGRPADQLTLL 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ + + S+ IG + + TTP P+ L + L + Sbjct: 107 GITGTNGKTTTSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V +E SSH L Q R+ G+ A F+NL RDH+DYH+ + YF +K +LF E Sbjct: 167 VEAGVETVIMEVSSHALAQERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAEN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296 L A++ DD Y+ + QG I V + + Sbjct: 227 LSATGVAVVNGDDTYASRIYNEQRGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTP 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG- 355 D L G + N L+A G+ + G V E +E++ V GR E V Sbjct: 287 AGDIPLKSKLLGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSG 346 Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++L+ ++ R++ GR+I VFGCGGDRD+GKRP+MG +A + AD+A+ Sbjct: 347 APAVLVDYAHTDDALKRSIEAARSLAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAV 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLN 457 VT DNPR+EDPE+I +++ GI ++ +R AI AI + + Sbjct: 407 VTSDNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLAS 466 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 DV+++AGKGHET V EK + D + + L + Sbjct: 467 ADDVVLIAGKGHETYQQVGE-EKLVFDDRQVAAKALANRI 505 >gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Verrucomicrobium spinosum DSM 4136] Length = 507 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 152/496 (30%), Positives = 235/496 (47%), Gaps = 21/496 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DLI +I+ + ++ ++ DSR ++ G++F A+ G K DGH FIP+ Sbjct: 4 LRDLIEGLDKPVISG-------GLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120 A+A+GA AIV +A + L V N R L+ A+ G + V Sbjct: 57 ALAEGAVAIVAETA-------PPEDCSVTWLHVKNARVALAEMAAAYKGHPARSMAVGGV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ A + + + +G + + TTP + L LS + Sbjct: 110 TGTNGKTTTAFLLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMRD 169 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G V++E SSH +DQHR G+ A FTNL +DH+DYH T + YF AK +LF Sbjct: 170 RGCVAVAMEVSSHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAA 229 Query: 240 KESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 S ++ D + ++ V + +G+ Sbjct: 230 SRSGKLVINVDDIWGRRLVDAHKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHKGR 289 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P G+F VYN+L A +G + ++ ++ +PGR E V ++ + Sbjct: 290 SLLVRIPQIGQFNVYNSLAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSFHV 349 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +VDYAHT + L L R + RII VFGCGGDRD+ KRP+M + + +DI+I+T D Sbjct: 350 FVDYAHTPDGLVNALSTARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSD 409 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 NPR+EDP+ I + G +R EAI TAI+ + D++V+AGKGHE V Sbjct: 410 NPRTEDPQAIMDDARKGFTRSAHALIADRKEAIHTAIKGAREGDIVVIAGKGHEPYQDVQ 469 Query: 477 NGEKKMSVDCDIIREI 492 G K D + R++ Sbjct: 470 -GVKHPFDDRRVARQL 484 >gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] Length = 482 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 166/499 (33%), Positives = 255/499 (51%), Gaps = 27/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ ++ E++ + I E+ DSR +++G +FV I G DGH +I Sbjct: 1 MKLKKVMNGLTYEVVKGND-------DLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA AIV+S + ++ V +TRK L++ +S Y + + + Sbjct: 54 DKAYKNGAAAIVISEEVENV-------PDCTVIKVKDTRKALAIISSNYYDNPSKKMKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G +G + I + TTP + L K + Sbjct: 107 GITGTNGKTTSTFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV + +E SSH L R G++ FTNL RDH+D+H+T + Y+ AK+ LF+ Sbjct: 167 VDEGVQYCVMEVSSHSLYLDRAYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNT 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D ++ + G ++ + + + I+ G Sbjct: 227 INSVINIDDKYGDKVYEDAL------GTKITYAINKEADLKANDLNIHSRGANFNITYRG 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + +PG++ V NAL + G C+ GI +V + LE ++ VPGR E V G Sbjct: 281 QTAHINLNIPGKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGY 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE ILK R T+GR+I VFGCGGDRD KRPIMGKI +L+D A++T Sbjct: 341 EVIVDYAHTPDGLENILKTAREFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVIT 400 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR E+P I EI++G+ + NR EAI+ AI M K DV+VVAGKGHE I Sbjct: 401 SDNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKGHEDYQI 460 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + + +II EIL Sbjct: 461 LKD-KTIHFDEREIIAEIL 478 >gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] Length = 501 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 177/485 (36%), Positives = 260/485 (53%), Gaps = 8/485 (1%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 + + L + R I ++ DSR ++ G +F A+ G + G FI A+ GA AI Sbjct: 6 RKSLTDLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAI 65 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + +A + +S+ ++V ++ R+ L+ A+ +G PE ++ VTGT+GK+SVAS Sbjct: 66 LTDAAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVAS 125 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 F +QI G + IG T ++ TTP PI L + L+ GVTH ++EASS Sbjct: 126 FCRQIWCELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASS 185 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RLDG+ L+A F+N +DH+DYH T YF AK LF +LP++ A+I DD Sbjct: 186 HGLEQRRLDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDP 245 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A G +++VG G +H++ Q + +G+ L G F Sbjct: 246 KGPAMAEIARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGF 305 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N +AAGL IA G D V + L + V GR + T G ++VDYAHT +++ Sbjct: 306 QGENVALAAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGAAVFVDYAHTPDAVS 365 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L +R GR++ + G GGDRD KRP+MG A AD+ IVTDDNPRSEDP IRA Sbjct: 366 TALSALRPHVMGRLVAIIGAGGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAAIRA 425 Query: 431 EIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 ++ G+ E G+R EAI ++ML D L++ GKGHET IV + + Sbjct: 426 AVMAGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICGKGHETGQIVGD-DVFPFD 484 Query: 485 DCDII 489 DC+ Sbjct: 485 DCEQA 489 >gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-63q42] gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile ATCC 43255] Length = 484 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D+I I IN V DSR + G +F+ I G DGH +I Sbjct: 1 MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A +V ++ + V +TRK ++ A Y + + Sbjct: 54 KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 VTGT+GK+S+ + + +I + IG TTP I L + + Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK +LF + Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 DD K++ + + G + + + + + Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+PG F VYN L C +GI + E L + V GRFE V N +G Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I +D+ I+T Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E+PE I +I+ GI + +R +AI AI M K DV+++ GKGHET Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ K D ++ E L + Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484 >gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-23m63] gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] Length = 484 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D+I I IN V DSR + G +F+ I G DGH +I Sbjct: 1 MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A +V ++ + V +TRK ++ A Y + + Sbjct: 54 KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 VTGT+GK+S+ + + +I + IG TTP I L + + Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK +LF + Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 DD K++ + + G + + + + + Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTNADFMARDIKSDSDGVSYRLITP 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+PG F VYN L C +GI + E L + V GRFE V N +G Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I +D+ I+T Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E+PE I +I+ GI + +R +AI AI M K DV+++ GKGHET Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ K D ++ E L + Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484 >gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 486 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 165/503 (32%), Positives = 259/503 (51%), Gaps = 26/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DLI + + ++ I +++ +S++ + G +FV I G K DGH +I Sbjct: 1 MKLLDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA +VV + I + NTRK L++ ++ +G ++ + Sbjct: 55 NEAIQNGACLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S ++ I + G IG + I S + + TTP L K + Sbjct: 111 GVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S+GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 171 KSEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMS 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A + V + + + NK Q + G Sbjct: 231 KKRVVNA-------DDMWGKRIIEMYPDSVTYAKDSDAQVFARNIKLFVNKNQFELWYNG 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V +++ Sbjct: 284 EKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIV-ESNQKFT 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + L ++K + +T GR +++FGCGGDRD+ KRPIMG+IA +AD IVT Sbjct: 343 VVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 403 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ + + ++++ IL I Sbjct: 463 ILKD-RTIPFDEREVVKNILKEI 484 >gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gloeobacter violaceus PCC 7421] gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gloeobacter violaceus PCC 7421] Length = 489 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 154/499 (30%), Positives = 237/499 (47%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + + + I +S+DSR +Q G +F+ + G + DG F Sbjct: 4 MRLHELLART--------GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILA 119 PQAIA GA +V+S + + + + P++ V + + AS Y LA Sbjct: 56 PQAIAGGAAGLVIS------ENARGVEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLA 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 + + + + + ++ + +G S +Q+ R TTP + + K L+ + Sbjct: 110 GVTGTNGKTTTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMV 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + +E SSH L Q R+ G + A FTNL +DH+D+H ++YF AK LF Sbjct: 170 EAGCQYGVMEVSSHALAQQRVAGCRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPE- 228 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A+I ADD + + G I+ + + T+ Sbjct: 229 YRSGRAVINADDPWGVRLAAAYDQVWTYSFQPGAD---IYPEDAVFTPEGIRGTLVTPVG 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F PL G+F + N L A G +A+GID + L VPGR E V + + Sbjct: 286 RAAFTSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAV 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + L +L+ R GR+I VFGCGGDRD+ KRP MG+IA +L+D+ +VT D Sbjct: 346 IVDYAHTPDGLRKLLEATRPFVRGRLICVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSD 405 Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+E+PE I +I+ GIP + +R AI A+ D +V+AGKGHE I+ Sbjct: 406 NPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL 465 Query: 476 TNGEKKMSVDCDIIREILG 494 K D + RE L Sbjct: 466 GT-TKIHFDDREQAREALS 483 >gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 498 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 157/509 (30%), Positives = 247/509 (48%), Gaps = 32/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+ L + + +++DSR ++ G +FVA+ G+ DGH F Sbjct: 1 MRLRQLFQPFI-------NFQVTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA+ +GA A++V A + ++ P +VV +TR + +L A RL+G ++ Sbjct: 54 GQAVERGAVAVMVEEPV------ADVPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V V+ + +G + IG S + TTP + + + L Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRF 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 G TH +E SSH L + R G+ +FTNL +DH+D+H T + Y AK Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRL 227 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + A+I ADD +S + + + + + + V + + Sbjct: 228 GNGTGDDPARSVYAVINADDPWSPVMAEASAAPILTYGI--ERAADVRARDVRLSASGAR 285 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + F+ PL G F VYN L A + + G+ ++ + E + VPGR E + Sbjct: 286 FWVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLAASEIQEGIRSYPSVPGRMERI- 344 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + ++VDYAHT + LE +L ++R R++VV GCGGDRD+ KRP M ++A+ LA Sbjct: 345 DEGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLA 404 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D AI T DNPRSEDP I AE+ G+ E+ +R AI AI DV+V+A Sbjct: 405 DRAIFTSDNPRSEDPVAILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIA 464 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKGHE I+ EK+ D + R + Sbjct: 465 GKGHEDYQIIGA-EKRHFDDREEARRAIR 492 >gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 215/495 (43%), Positives = 291/495 (58%), Gaps = 16/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L D++ P ++ +++ S + G IF A+ G+K DG ++ Sbjct: 1 MRLSDVLPAGIE--------PPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ +GA AIV+ + T+ + ++ VDN R L+ A++ G+ P +AV Sbjct: 53 PDALQRGASAIVIGKGKGV-----TVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAV 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA F +QI G + +G + LTTP P+ L L+ L+ Sbjct: 108 TGTSGKTSVADFTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLAD 167 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH++ EASSHGLDQ+RLDG++L A +FTNLGRDH+DYH T++AY AK+RLF ELL Sbjct: 168 EGVTHLAFEASSHGLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQ 227 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 PA+I D A S +V A G RV++VG G + + +Q++ I +G+ Sbjct: 228 PGQPAVINTDGARSADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRS 287 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 FD PL G +QV NALVAAGL IA G + VL LE L VPGR E +G GG Sbjct: 288 FDVRLPLVGAYQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIG-ERNGGLAV 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +L L R +GR+I VFGCGGDRD+GKRPIMG+I+++ AD+ IVTDDN Sbjct: 347 VDYAHKPEALAAALDACRPFVTGRLISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSED IRAEI+ G G E GNR EAI TA+ M+ DV ++AGKGHET IV + Sbjct: 407 PRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKGHETGQIVGD-R 465 Query: 480 KKMSVDCDIIREILG 494 D D +R+ L Sbjct: 466 ILPFSDHDEVRKALE 480 >gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] Length = 494 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 185/480 (38%), Positives = 265/480 (55%), Gaps = 3/480 (0%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 + ++ L + + + +S DSR ++ G +F A+ G + G F+ A+ +GA A+ Sbjct: 5 AKPLSALGLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + A A P+LVV++ R LS A+ +G P ++AVTGT+GK+SVA+ Sbjct: 65 LTDRAGEDTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVAT 124 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 F + I Q GL + IG T +FA + TTP PI L + L+ +++ GVTH ++EASS Sbjct: 125 FTRMIWQALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASS 184 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL Q RLDG+ L A +FTN +DH+DYH T YF+AK LF +LP+E A+I DD Sbjct: 185 HGLAQRRLDGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDP 244 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +++RA G +++ VG I L+ Q V +G PL G F Sbjct: 245 KGAVLVERARARGQKLIRVGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGF 304 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L AAGL IA G + V E L +L V GR + T + G ++VDYAHT +++E Sbjct: 305 QAMNVLTAAGLVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGATVFVDYAHTPDAVE 364 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ +R GRII + G GGDRD+ KRP+MG A AD IVTDDNPR+EDP IRA Sbjct: 365 TALRALRPHVLGRIIAIVGAGGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPALIRA 424 Query: 431 EIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G P E G+R EAI ++ L D L++ GKGHE ++ + D + Sbjct: 425 AVMAGAGPEATEVGDRAEAILRGVDALGPGDALLIMGKGHERGQVIGT-DVFPFDDAEQA 483 >gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile] Length = 484 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 231/504 (45%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D+I I IN V DSR + G +F+ I G DGH +I Sbjct: 1 MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A +V +++ + V +TRK ++ A Y + + Sbjct: 54 KDAIEKGASAFIVEEDVAIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 VTGT+GK+S+ + + +I + IG TTP I L + + Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK +LF + Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 DD K++ + + G + + + + + Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+PG F VYN L C +GI + E L + V GRFE V N +G Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I +D+ I+T Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E+PE I +I+ GI + +R +AI AI M K DV+++ GKGHET Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ K D ++ E L + Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484 >gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 483 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 155/501 (30%), Positives = 247/501 (49%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I+ V DSR + ++F+AI G K DG ++ Sbjct: 1 MKLIDILKGVKCEI--------KGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L +R+D + FTNL +DH+D+HQ + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A V + K + + + + +E Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGVKDFAYVM-AKDIRNSLDGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + ++ I++ ++ +GR I++FG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP +I ++I GI ++ NR EAIR A+ K DV+++AGKGHET Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ N + + +I++EIL Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478 >gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] Length = 498 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 184/476 (38%), Positives = 270/476 (56%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + RE +I ++ DSR + G +F A+ G++ G FI A+AQ A AI+ Sbjct: 13 LSTLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTD 72 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + ++ +++ ++ R+ L+ A+ +G+HP ++AVTGT+GK+SV++F + Sbjct: 73 AEGARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTR 132 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ R TTP PI L + L+ + QGVTHV++EASSHGL Sbjct: 133 QIWYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGL 192 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L AG FTN +DH+DYH++ +AYF+AKM LF +L + A++ DD Sbjct: 193 DQRRLDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGP 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V + A G V+ VG + L Q++ +G+ L G FQ Sbjct: 253 LVAQIAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAE 312 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL I G D A V L L V GR + T G ++VDYAHT +++ + Sbjct: 313 NVLLAAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAV 372 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GRI+ + G GGDRD+ KRP+MG+ A + AD IVTDDNPRSEDP IRAE++ Sbjct: 373 EALRPHVIGRIVAIVGAGGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPATIRAEVL 432 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G PG E G+R EAI +ML D L++ GKGHET IV + D + Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICGKGHETGQIVGDAV-LPFDDAEQA 487 >gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2083] gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium HTCC2083] Length = 487 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 187/476 (39%), Positives = 265/476 (55%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL + + R I ++ DSR +QAG++F A+ G+K G FI A+ A AI+ Sbjct: 1 MQQLGLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTD 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ I+V D+ R L+ ++ +G P+ + AVTGT+GK+SV++FV+ Sbjct: 61 AVGAEIAADELANSDAAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVR 120 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI L + +G T S TTP PI L + L+ L +G++H ++EASSHGL Sbjct: 121 QIWNLLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGL 180 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH T +AYF+AKM LF +L + A++ DD Sbjct: 181 DQRRLDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGA 240 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 EV A G ++ VG + L Q + + F L G FQ Sbjct: 241 EVAMIAQAHGHELIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAE 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL IA G D A V + L L V GR + T + G ++VDYAHT +++E L Sbjct: 301 NVLLAAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGAAVFVDYAHTPDAVETAL 360 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++ + G GGDRD+GKRP+MG+ A + AD+ VTDDNPRSEDP IRA ++ Sbjct: 361 KAMRPHVMGRLVALIGAGGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPALIRAAVM 420 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P IE +R EAI A++ L D L++AGKGHET V + DC+ Sbjct: 421 GGAPEAIEVADRAEAILRAVDALGPGDALLIAGKGHETGQTVGD-TVFPFDDCEQA 475 >gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 485 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 154/492 (31%), Positives = 242/492 (49%), Gaps = 20/492 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + ++ ++ + + +I + DSR ++ G +F I G DGH F QA+ +GA Sbjct: 2 NELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A+V +L + P+++V +T++ ++ AS YG+ + + + VTGT+GK Sbjct: 62 VAVVAERPLAL---------DVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV + + + +G + IG I + R TTP + L + + + ++ V Sbjct: 113 TSVTHILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETA 172 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESP 243 +E SSH L R+ G FTNL DHIDYH+T + Y AK + Sbjct: 173 VMEVSSHALHLGRVRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKT 232 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A+I +DD S +++ + + + + T+ V G+ D Sbjct: 233 AVINSDDPASDRLIQMTTADVVTYGIKKQADV--YGENIKVSAAGTRFTLHVFGEKTDVQ 290 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F VYNAL AA G+ + + LEK+ V GRFE V + + VDYA Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPV-DEGQDFTVIVDYA 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SLE +L+ ++ I VV GCGGDRD KRP+MG+IA+ AD I T DNPR+E Sbjct: 350 HTPDSLENVLQTVQDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTE 409 Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 DP+ I A+I G+ + +R AI AI N D++V+AGKGHET + ++ Sbjct: 410 DPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAANTGDIVVIAGKGHETYQEIGR-QRI 468 Query: 482 MSVDCDIIREIL 493 D ++ R+ L Sbjct: 469 HFDDREVARDAL 480 >gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter sp. X514] gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X514] gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 483 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 154/501 (30%), Positives = 247/501 (49%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I+ V DSR + ++F+AI G K DG ++ Sbjct: 1 MKLIDILKGVKCEI--------KGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L +R+D + FTNL +DH+D+HQ + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A + + K + + + + +E Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGIEDFAYVM-AKDIRNSLDGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + ++ I++ ++ +GR I++FG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP +I ++I GI ++ NR EAIR A+ K DV+++AGKGHET Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ N + + +I++EIL Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478 >gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 486 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 261/505 (51%), Gaps = 30/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL+DLI + + + + I +++ +S++ + G +FV I G K DGH Sbjct: 1 MKLKDLIEN--------IDVLETNVGDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHE 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 +I +AI GA +VV + I + NTRK L++ ++ +G ++ Sbjct: 53 YINEAIQNGACLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFL 108 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175 + VTGT+GK+S ++ I + G IG + I S + + TTP L K Sbjct: 109 LIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFW 168 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 169 QMKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFG 228 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + A + V + + + NK Q + Sbjct: 229 MSKKRVVNA-------DDMWGKRIIEMYPDSVTYAKDSDAQVFARNIKLFVNKNQFELWY 281 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V +++ Sbjct: 282 NGEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIV-ESNQK 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAHT + L ++K + +T GR +++FGCGGDRD+ KRPIMG+IA +AD IV Sbjct: 341 FTVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIV 400 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 401 TSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ + + + ++++ IL I Sbjct: 461 YQILKD-KTIPFDEREVVKNILKEI 484 >gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] Length = 483 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 162/497 (32%), Positives = 255/497 (51%), Gaps = 24/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + I+ + ++N++ DSR + G +FVAI G DGH FI Sbjct: 1 MKLIQILKGLEYKKISGT-------LDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA+ I+ S N+ + V+NTRK L++ AS YG ++ Sbjct: 54 NKAIENGAKVIICSKNTEF-------YENSTYIKVENTRKALAIMASNFYGNPSNEIKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G ++ IG + I TTP + L + + Sbjct: 107 GITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + + +E SSH L R+ G+K G FTNL +DH+D+H+T + Y+ AK+ + Sbjct: 167 NDKNIEYCIMEVSSHSLSLDRVYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLS----M 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +II DD Y ++K ++ + + + + + + + Sbjct: 223 FHNAKNSIINIDDFYGDRMLKDIPKTSTKITYSTERQADLFAENIVNHSRGAEFDLIYKE 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +PG + VYNAL +A C+ GI V E LE + V + G Sbjct: 283 TMIHINLSIPGIYNVYNALCSAAACLEEGISIEKVKEGLENVVVPGRCENVTKKYNLGFD 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL + T GR+I VFGCGGDRD+ KRPIMGKI +L+DIAI+T Sbjct: 343 VIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPR+E+P I +++ GI +I NR EAI+ A++M K DV+VVAGKGHE I+ Sbjct: 403 DNPRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKGHEDYQIL 462 Query: 476 TNGEKKMSVDCDIIREI 492 + + + ++I +I Sbjct: 463 KD-KVIHFDEREVIADI 478 >gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-66c26] gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CIP 107932] gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-76w55] gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-97b34] gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-37x79] gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CD196] gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile R20291] gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-32g58] gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile CD196] gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile R20291] Length = 484 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D+I I IN V +SR + G +F+ I G DGH +I Sbjct: 1 MKLNDIIQGLDI-------INVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A +V ++ + V +TRK ++ A Y + + Sbjct: 54 KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 VTGT+GK+S+ + + +I + IG TTP I L + + Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK +LF + Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 DD K++ + + G + + + + + Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+PG F VYN L C +GI + E L + V GRFE V N +G Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I +D+ I+T Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E+PE I +I+ GI + +R +AI AI M K DV+++ GKGHET Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ K D ++ E L + Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484 >gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] Length = 483 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 174/499 (34%), Positives = 271/499 (54%), Gaps = 26/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ +L+ E++N E IN + DSR I +FVAI G K DGH FI Sbjct: 1 MKVNELLKGLNYEILNGT-------LELDINAIQYDSRKISESDVFVAIEGFKVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI++GA+ IV S + + + V NTRK L++ AS LY + ++ Sbjct: 54 EKAISEGAKVIVCSKEVEIHE-------EITYIKVQNTRKALAIMASNLYNNPSKDIKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G S+ IG + I + + TTP + L + + Sbjct: 107 GITGTNGKTTSTYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + +E SSH L R+ G++ G FTNL +DH+D+H+T + Y+ AK+ +F+ Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II DD Y + V+ ++ ++ + + K + + + + Sbjct: 227 KNS----IINIDDTYGERVLNDVPDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKS 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 ++ +PG + VYNAL +AG C++ GI V + LE + V PGR E G Sbjct: 283 EETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVV-PGRCENATKEYDLGF 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT + LE IL+ R T GR+I VFGCGGDRD+ KRPIMGKI D++DIAIVT Sbjct: 342 DVIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+P +I +++ GI +I NR EAI+ AIE+ K DV+VVAGKGHE I Sbjct: 402 SDNPRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKKGDVIVVAGKGHEDYQI 461 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + + ++I +I+ Sbjct: 462 LKD-KTIHFDEREVIADII 479 >gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] Length = 492 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 164/492 (33%), Positives = 255/492 (51%), Gaps = 23/492 (4%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL++ + + + + ++ ++ DSR +Q G++FVAI G K DGH FI A GA Sbjct: 8 LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A + + + ++ ++ V ++R+ L+L A + YG + + VTGT+GK+ Sbjct: 68 A-------VVVEREVEVPADLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + I ++ GL +G I A TTP + L K ++ + + V V+ Sbjct: 121 TTTHLIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVA 180 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L +R+ G+K FTN+ +DH+D+H + Y AK +LFE+ + A+I Sbjct: 181 MEVSSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDIK---YAVI 237 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 ADD ++++ K + G + K + T++ + L Sbjct: 238 NADDQAAEQLFKISR--GKVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKL 295 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F VYN+L A + + +G + V LE + V GRFE V + VDYAHT Sbjct: 296 TGRFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQ-DFAVVVDYAHTP 354 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + LE IL R IT GR+I VFGCGGDRD+ KRPIMG+IA +D+ +VT DNPR+EDP+ Sbjct: 355 DGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTSDNPRTEDPQ 414 Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 KI +I+ G+ G ++ +R EAI AI + DV+V+AGKGHE I+ K Sbjct: 415 KIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKGHEDYQIIGT-TKY 473 Query: 482 MSVDCDIIREIL 493 D ++ E L Sbjct: 474 HFDDREVAAEAL 485 >gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] Length = 485 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 167/500 (33%), Positives = 264/500 (52%), Gaps = 24/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ K ++N E I + DSR+I+ IF AI G DGH FI Sbjct: 1 MKLKEVLKKLEYNILNG-------NIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA+ IV + ++ + + + V N+RK L++ AS YG + + + Sbjct: 54 ESAIEKGAKVIVFDKGFENEN----MYKDITFIKVKNSRKALAVAASNYYGNPKDKLKLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I + +G +G + I + TTP + + K + Sbjct: 110 GVTGTNGKTTSTFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L R+ GI+ G FTNL +DH+D+H+T + Y+N+K+ LF+ Sbjct: 170 VDSGVDYCVMEVSSHSLYLDRVYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNS 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + +I DD Y + ++K Y + V + T+ +G Sbjct: 230 INS----VINIDDNYGERILKEIEEKTFTYSIKKYSDL--KAESVRLHSRGGEFTVDFKG 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 +PGE+ V NAL + C+ GI ++ LEKL VPGR E V G Sbjct: 284 NKEKINIHIPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGY 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + L+ +L+ R T G++I V+GCGGDRD+ KRPIMG+I +L+D+AI+T Sbjct: 344 DVIVDYAHTPDGLDNVLRTARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+P I +I+ G+ +I +R EAI+ A+ + K DV+VVAGKGHE I Sbjct: 404 SDNPRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKGHEDYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + + ++I+EI+ Sbjct: 464 LKD-KTIHFDEREVIKEIIE 482 >gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 488 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 161/501 (32%), Positives = 245/501 (48%), Gaps = 29/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L D++ + + + + DSR+ + G +FVAI G K DG +I Sbjct: 1 MRLVDILKDVNYTTVKG-------NIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ +GA AIVV S I + ++ V+N RK L+ AS YG + ++ Sbjct: 54 NDAVERGAVAIVVEREVS-------IDKDITVIKVENARKSLAKIASNYYGDPSKQLFMI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I + IG + TTP + L + L + Sbjct: 107 GVTGTNGKTSVTYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRLM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV +V +E SSH L +R+D K FTNL +DH+D+H+T Y NAK +LF Sbjct: 167 VDEGVKYVVMEVSSHSLALNRVDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFRM- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D M NA + + K + + T+ +E Sbjct: 226 ---AKTACVINIDDDYSSYMIENSNAKVVTYGIKDYAYIM-AKDIKNDIKGAKFTVQIED 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + +PG F VYN+L A + +GI V L+ + + GRFE + Sbjct: 282 IKSEIALKIPGLFSVYNSLAAISVAFILGIPLQSVKMALKDVKI-KGRFEVL-DLDVPYN 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + LE ++K +G+ I++FGCGGDRD+GKRP MG++A AD I+T Sbjct: 340 VVIDYAHTPDGLENLMKAFGEYNTGKKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITS 399 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE+P KI EI GI + +R EAI+ A+ + DV+++AGKGHET Sbjct: 400 DNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKGHETYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 ++ + + DI+R+IL Sbjct: 460 VLKDKVID-FDERDIVRDILN 479 >gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 346 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 180/463 (38%), Positives = 264/463 (57%), Gaps = 2/463 (0%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + ++ DSR ++ G++F + G++ G FI A+ GA AI+ + + Sbjct: 20 RPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDG 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + ++V ++ R+ S A+ YG P ++ VTGT+GK+SVASF +Q+ Q G ++ I Sbjct: 80 AEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANI 139 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G T F+ D TTP P+ L AL+ +++QG+TH ++EASSHGLDQ RLDG++L+A Sbjct: 140 GTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLVAA 199 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN +DH+DYH+T +AYF AK LF +L + A+I DD ++M AH AG + Sbjct: 200 GFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAEL 259 Query: 268 LSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+VG + L + Q++ + +G L G FQ N LVA GL +A G Sbjct: 260 LTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATG 319 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ++ L +L V GR + V G ++VDYAHT ++L+ L+ +R GR++V Sbjct: 320 AQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALRPHVLGRLVV 379 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFG GGDRD GKRP+MG A AD+ VTDDNPRSEDP IRA++ G P + +R Sbjct: 380 VFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCPEATDVPDRA 439 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 EAI ++ L DVL++AGKGHET V + D + Sbjct: 440 EAILRGVDALEPGDVLLIAGKGHETGQTVGD-VVYPFDDAEQA 481 >gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 500 Score = 346 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 165/499 (33%), Positives = 266/499 (53%), Gaps = 26/499 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DLI + + ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 16 KLKDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYID 69 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AI GA +VV + I + NTRK L++ ++ + ++ + Sbjct: 70 EAIQNGARLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFAHPSKDFLLIG 125 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S ++ I + +G IG + I S + + TTP L K + Sbjct: 126 VTGTNGKTSTTFMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 185 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S+GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF+AK++LF Sbjct: 186 SEGVDSVVMEVSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSK 245 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A DD++ K +++ + + + + + NK Q + K Sbjct: 246 KRVVNA----DDSWGKRIIEMYPDC---ITYAKDSDANVCAQNIKLFVNKNQFDLYYNNK 298 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L +PG F +YN+L AA CI +GI+ + + LE+L VPGRFE V +++ + Sbjct: 299 KENILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIV-ESNQKFTV 357 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT D Sbjct: 358 VIDYAHTPDGLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSD 417 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET I Sbjct: 418 NPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQI 477 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + ++++ IL Sbjct: 478 LKD-RTIPFDEREVVKNIL 495 >gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] Length = 508 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 167/502 (33%), Positives = 253/502 (50%), Gaps = 15/502 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ K + + P E+ + ++++S Q G +F+ + G + DG F Sbjct: 1 MKLKELLAK----VADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT--PILVVDNTRKFLSLFASRLYGKHPE--N 116 P AIA GA A +VS + + + S ++ N + A+ YG + Sbjct: 57 PSAIANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLK 116 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALS 175 ++ VTGT+GK++ ++ + + S + G T +Q TTP + L + L+ Sbjct: 117 LVGVTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLA 176 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G + +E SSH L Q R+ FTNL +DH+DYHQT + YF AK LF Sbjct: 177 EAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLFS 236 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + AII ADD+Y K +++R S+ + ++ N + + Sbjct: 237 P-QYLQGRAIINADDSYGKRLIERLEADRVWSYSINDSTADLWAAQLSYEPNGVKGVLHT 295 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SR 354 + F PL G++ + N L A G +++G+D A ++ L + VPGR E V + + Sbjct: 296 PQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQ 355 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DLAD+ + Sbjct: 356 DVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLADVVV 415 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+EDP +I +I+ GI I +R AI+ AI D +++AGKGHE Sbjct: 416 VTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKGHED 475 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ EK D + RE L Sbjct: 476 YQILGT-EKVHFDDREQAREAL 496 >gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] Length = 509 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 165/520 (31%), Positives = 250/520 (48%), Gaps = 41/520 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ IN L I E ++ V +SR +FVAI G K DGH +I Sbjct: 1 MNLSILLKG-----INILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA+ IV T+ ++ V+N R+ L L A Y ++AV Sbjct: 56 DDAVRCGAKVIVCEKEV-------TMPPEITVVRVENGRRTLGLLARNFYADPSRCLVAV 108 Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 GT+GK++V ++ I Q +G S +G + + TTP + L + + + Sbjct: 109 AVMGTNGKTTVTYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GVTH+ E SSH +D R+D G FTNL +DH+DYH+T + YF AK R F E+ Sbjct: 169 VDHGVTHLVAEVSSHAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEV 228 Query: 238 L-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L + ADD + K +++ + + I + + Sbjct: 229 LPGGRKQHRYAMAVNADDPWGKRLIRETGEISRPLTFGIEEKADIRASSFDLSLDGIRAE 288 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I V FD L G+F +YN L A +A+ + + + ++ VPGR E V + Sbjct: 289 IVVGSMSFDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKVSGS 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 ++ ++VDYAHT ++L +L+++ GRII VFGCGGDRD+GKRP+MGK+A + +D+ Sbjct: 349 TQPD-VFVDYAHTDDALRRVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDL 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453 I+T DNPRSEDP I +I GI G++ +R EAI AI Sbjct: 408 TILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAI 467 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++++AGKGHE I+ ++ D + +E L Sbjct: 468 RSARPSDIVLIAGKGHEDYQIIGE-KRLFFDDRAVAKEFL 506 >gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] Length = 487 Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats. Identities = 209/504 (41%), Positives = 285/504 (56%), Gaps = 33/504 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L D++ +D + + V++DSR + G +F A+ G DG FIP Sbjct: 5 RLSDILRRDL-------------DVDPVVTGVTADSRKVGPGTLFCALPGTARDGREFIP 51 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA++QGA A++ T+ + + IL + R+ +L A YG P+ +A+T Sbjct: 52 QALSQGAAAVLA--------PEDTLATASNILTTYDVRRAYALAAKAFYGAQPKTCVAIT 103 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGP------TSTISSFAQDNRLTTPSPIYLAKALS 175 GT+GK+SVA+F +Q+ G S +G LTTP +A+ L+ Sbjct: 104 GTNGKTSVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHLA 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 L+ GVTH+++EASSHG+DQ RLDG+ L A FTNL +DH+DYH T +AY AK+RLFE Sbjct: 164 SLARDGVTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLFE 223 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +LLP+ A++ AD A AG +LSVG +G+ + L + Q + + Sbjct: 224 QLLPRGRVAVLNADSDAYNAFAASAITAGASLLSVGERGQHLTLTHRDLTVDGQILYLEH 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G+ F+ L G FQ NALVAAGLC+A G + VLE L L GR E VG+ G Sbjct: 284 QGRKFEVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTGNG 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 IYVDYAHT + LE +LK +R T GR++ VFGCGGDRD+GKRP MG IA LAD IV Sbjct: 344 AEIYVDYAHTPDGLETVLKALRPHTQGRLVCVFGCGGDRDRGKRPQMGAIAERLADRVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 TDDNPRSE+P IRAEI+ G+ +E G+R +AI A+ L DVLVVAGKGHE Sbjct: 404 TDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVAGKGHE 463 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 IV G+ D ++ E L Sbjct: 464 QGQIVA-GKVLPFDDAGVVLEALN 486 >gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] Length = 498 Score = 345 bits (885), Expect = 9e-93, Method: Composition-based stats. Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 3/477 (0%) Query: 15 INQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +++ + P + + I + DSR I++G +FVA+ G+K G F+ A+ A A++ Sbjct: 11 LSEFGLVPSNEIYTDPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVL 70 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + + PI+V ++ R LS +R +G P ++AVTGT+GK+SVA+F Sbjct: 71 TDEDGFNFAKKIFTKIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANF 130 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI + G + IG + + + TTP P L K L + + GVTH S+EASSH Sbjct: 131 TRQIWECLGKKAVNIGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG+ L A +FTN DH+DYH+T AYFN+K+ LFE +L E +I DD Sbjct: 191 GLDQKRLDGVYLTAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPK 250 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + A G +++VG + LK QQ+ S + L G FQ Sbjct: 251 GLYIYEVAKLRGQDIITVGKNNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQA 310 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L AA L IA G V + L +L V GR + S G ++VDYAHT +++E Sbjct: 311 MNILQAAALVIACGEQPNDVFDTLSELRTVSGRMQLAAKRSNGASVFVDYAHTPDAVETA 370 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK +R GR++++ G GGDRD+ KR ++G+ A AD+ VTDDNPRSEDP+ IR I Sbjct: 371 LKAMRPHVMGRLLIIVGAGGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSI 430 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G P IE G+R AI T ++ L D L++AGKGHET I+ N + D + Sbjct: 431 LLGCPDAIEIGDRARAILTGVDALKPGDALLIAGKGHETGQIIGN-DIFDFNDLEQA 486 >gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 489 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 249/502 (49%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +LI EL + +R+I+ ++ DSR ++ G +F+ I G K DGHLF Sbjct: 1 MKLVELIKNLTIELQDG-------PLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAI GA A++ +L +TR L+L A+ YG+ + ++ Sbjct: 54 GQAIENGAVAVLAERQLD-------TGGKATLLTTPDTRSALALLAANYYGRPSKSIRVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++ ++ I + +G + +G + + ++ + TTP + + ++ Sbjct: 107 AVTGTNGKTTTTDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALC 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + ++ +E SSH L R+ I FTNL +DH+D+HQ Y AK++LF+ + Sbjct: 167 REEKADYIVMEVSSHALQLQRVAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMI 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 ++ I D E + +A CR + + + ++ + + Sbjct: 227 KEEKQNYAIINIDDPWAEEIFQAATIPCRSYGIKKRSDY-QAGELKIDLDGSSFRLHYGD 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L G F +YNAL A + GID L+ L ++ VPGRFE V Sbjct: 286 NSLMINMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQ-DFA 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL+ R + R+I VFGCGGDRD+ KRP+MG+IA +D +VT Sbjct: 345 VIVDYAHTPDGLENILQTSRELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVVTS 404 Query: 418 DNPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSEDP I AEII G+ +R EAIR AI + D++V+AGKGHE Sbjct: 405 DNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKGHENY 464 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 +V + + D + E+L Sbjct: 465 QLVKDQVLE-FDDRKVAAELLR 485 >gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] Length = 503 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 266/482 (55%), Gaps = 8/482 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + R+ I +S DSR ++ G +F A+ G K G I A+ GA AI+ Sbjct: 12 LAALGLRAKGGRDATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTD 71 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ +++ ++ R L+L AS +G HPE ++AVTGT+GK+SV++F + Sbjct: 72 AQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI L++ +G T ++ + TTP PI L + L+ S G+THV++EASSHGL Sbjct: 132 QIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGL 191 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH+T +AYF+AKM LF LLP++ A+I DD+ Sbjct: 192 DQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGP 251 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 EV++ A + G ++VG L Q++ + L G FQ Sbjct: 252 EVVQIAESRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQAD 311 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AA L IA G D + L L V GR + T GG ++VDYAHT +++ L Sbjct: 312 NVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R G++I + G GGDRD GKRP+MG+ A+ AD+ VTDDNPRSEDP IRA ++ Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAVQNADMVFVTDDNPRSEDPRVIRAAVM 431 Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G IE G+R EAI I+ L D L++AGKGHE+ I+ + + D + Sbjct: 432 AGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490 Query: 488 II 489 Sbjct: 491 QA 492 >gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 483 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 153/501 (30%), Positives = 246/501 (49%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I V DSR + ++F+AI G K DG L++ Sbjct: 1 MKLIDILKGVNCEI--------KGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA AIVV ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAIAIVVDREIKE-------YPGVTTVLVEDARAAMAKIASNFYNNPTTKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L R++ + FTNL +DH+D+H + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A + + K + + + + +E Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKARVLTYGIKDFAYVM-AKDIRNSLDGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEMSLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + ++ +++ ++ +GR I++FG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE+P +I ++I GI ++ NR EAIR A+ K DV+++AGKGHET Sbjct: 399 DNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ N + + +I++EIL Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478 >gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] Length = 490 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 188/476 (39%), Positives = 267/476 (56%), Gaps = 2/476 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + P + +++++ DSR +QAG +F A+ G + G FI A+ GA AI+ Sbjct: 5 LSDLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTD 64 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A + + ++ ++VV++ L+ A+ +G PE ++AVTGT+GK+SVASF + Sbjct: 65 RAGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTR 124 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + G+ + IG T +F TTP P+ L + L+ + + GVTH ++EASSHGL Sbjct: 125 QIWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG++L A +FTNL +DH+DYH T +AYF AK+RLF LLP A++ DD + Sbjct: 185 DQKRMDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGL 244 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V + G V+ V + + Q V +G L G FQ Sbjct: 245 RVAEACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAM 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L AAGL IA G D V L K+ V GR + S G IYVDY+HT +SLE+ L Sbjct: 305 NVLTAAGLVIAGGEDPEDVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVAL 364 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++VVFG GGDRD KRP+MG A +D+A VTDDNPR+EDP IRA ++ Sbjct: 365 KALRPHVLGRLVVVFGAGGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P +R EAI A++ML D L++AGKGHET V + D + Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKGHETGQQVGD-VIYPFDDVEQA 479 >gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis] Length = 483 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 222/471 (47%), Positives = 290/471 (61%), Gaps = 8/471 (1%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 KI +S++SR I G++FVA+ GNK DG +I AI +GA +V + ++ S Sbjct: 15 NLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+L V + R L+L A+R Y PE +LAVTGTSGK+SV SF++QI Q G Sbjct: 75 ------VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFC 128 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG +S D LTTP P+ L + L L+ +GVTH ++EASSHGL+Q RLDGI Sbjct: 129 AASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGI 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 L A +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PA+I ADD YS+EV+ Sbjct: 189 NLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQ 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 AG R L++G +G+FI + ++ +KQ V +E + F PL G FQV NAL+AAGL Sbjct: 249 AGRRALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I G S V L+KL PGR E V +YVDYAH +LE +L R T G Sbjct: 309 ITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 R+IVVFGCGGDRDQ KRP+MGK+ LD ADI IVTDDNPR+E+PEKIR +I+ PG +E Sbjct: 369 RLIVVFGCGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEI 428 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI A+ +L D L++AGKGHE +V E + D L Sbjct: 429 ADRSEAIYYAVGLLEAGDTLIIAGKGHENGQVVG-QETRPFSDRLEAISAL 478 >gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] Length = 483 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 168/497 (33%), Positives = 258/497 (51%), Gaps = 24/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + +N + +N+V DSR I +G +FVAI G DGH FI Sbjct: 1 MKLIQILKELDYTNLNGT-------LDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P+AI GA+ IV S I + + V+NTRK L++ AS YG I + Sbjct: 54 PKAIENGAKVIVCSKDTE-------INESCTYIKVENTRKALAIIASNFYGNPSNKIKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G ++ IG + I TTP + L + + Sbjct: 107 GITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + +E SSH L R+ G++ G FTNL +DH+D+H+T + Y+ AK+ +F Sbjct: 167 KDKNIEYCIMEVSSHSLSLDRVYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II DD+Y + ++K N +V + + + + + +G Sbjct: 227 KNS----IINIDDSYGERMLKDIPNTNLKVTYSTERQADLVANNIVNHARGAEFDLIYKG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +PG + VYNAL +AG C+ I V E LE + V + G Sbjct: 283 TTIHINLSIPGIYNVYNALCSAGACLEEEISIEKVKEGLENVVVPGRCENVTKKYNLGFD 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL + T GR+I VFGCGGDRD+ KRPIMGKI DL+DIAI+T Sbjct: 343 VIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPR+E+P I +++ GI ++ NR +AI+ A+++ K DV+VVAGKGHE I+ Sbjct: 403 DNPRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKGHEDYQIL 462 Query: 476 TNGEKKMSVDCDIIREI 492 + + + ++I +I Sbjct: 463 KD-KVIHFDEREVIADI 478 >gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] Length = 480 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 212/486 (43%), Positives = 291/486 (59%), Gaps = 20/486 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L D + F Q E + ++ DSR ++ G +F A+ G+K DG FI Sbjct: 1 MNLRELFSGD--------ATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A+V A+S+ + P++V N R+ L+L A+ Y + P+ I AV Sbjct: 53 GAAIEAGAVAVVADHAHSV---------SVPVIVTSNPRRALALAAAAFYPRQPQTIAAV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +Q+ G + +G +S LTTP P+ L +AL L+ Sbjct: 104 TGTSGKTSVAAFTRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAG 163 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y AK+RLF +L P Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAP 223 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +PA+I AD +S V+ A V+++G +G+ I L Q++TI G+ Sbjct: 224 EGAPAVIAADHEHSAAVIAAARARKLDVITIGRKGEGIRLVDATIDGFGQKMTIQHRGQT 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL GEFQ+ NALVAAGL IA G D+ LE+L GR E +G + RG ++ Sbjct: 284 HRLRLPLVGEFQIENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIG-DCRGAPVF 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L L+ +R GR++VVFG GGDRD GKRP+MG IA+ AD IVTDDN Sbjct: 343 VDYAHKPDALMKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGAIAMRYADAVIVTDDN 402 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P IRAEI+ G E G+R EAIR+A+ L DVL++AGKGHET IV + + Sbjct: 403 PRSERPATIRAEILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKGHETGQIVGD-K 461 Query: 480 KKMSVD 485 D Sbjct: 462 VLPFSD 467 >gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] Length = 483 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 187/494 (37%), Positives = 277/494 (56%), Gaps = 20/494 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ + ++ E+ + ++ DSR ++ G++F A+ G K G FI Sbjct: 1 MTLNDLLLDE---------GLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+A+ GA I+ P++ V L+ A+R Y + P +I+A+ Sbjct: 52 PKALTAGASVILTDEPVEAP---------VPVIAVPEPAALLARMAARFYPRQPGHIVAI 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GKSS F++QI +G+ + +G + + TTP + L AL L+ Sbjct: 103 TGTNGKSSTVEFLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAG 162 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+ +EASSHGL QHR+DG++L G+FTNL +DH+DYH YF +K++LF E LP Sbjct: 163 EGVTHLGMEASSHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLP 222 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+I D + ++ A G VL++G++G + ++++ Q V + +G++ Sbjct: 223 ADGRAVINVDSEWGGKMAASARERGLEVLTMGWRGSDLAIREITPRAASQSVIFAWKGRE 282 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL GEFQ+ NAL AA + ++ G+ A VL+ L+ L VPGR E VG + G + Sbjct: 283 HALDIPLVGEFQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGRLEKVGETAAGAPVL 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L+ +L+ R T GR+IV+FGCGGDRD KR MG IA + AD IVTDDN Sbjct: 343 VDYAHTPDGLDKLLRAARPHTRGRVIVIFGCGGDRDASKRAKMGVIAANQADHVIVTDDN 402 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSEDP IR ++ G P E +R +AIR + ML D L++AGKGHET V + Sbjct: 403 PRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKGHETGQTVGD-I 461 Query: 480 KKMSVDCDIIREIL 493 D + R L Sbjct: 462 VHPFDDREQGRAAL 475 >gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] Length = 495 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 164/499 (32%), Positives = 264/499 (52%), Gaps = 26/499 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DLI + + ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 11 KLKDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYID 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AI GA IVV + I + NTRK L++ ++ + ++ + Sbjct: 65 EAIQNGARLIVVDEFFDTSKIKGKID----YIKTSNTRKALAVMSANFFAHPSKDFLLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S ++ I + G IG + I S + + TTP L K + Sbjct: 121 VTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMR 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF+AK++LF Sbjct: 181 NEGVDSVVMEVSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSK 240 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A DD++ K +++ + + + + + NK Q + K Sbjct: 241 KRVINA----DDSWGKRIIEMYPDC---MTYAKDSNATVCARNIKLYVNKNQFDLWYNDK 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L +PG F +YN+L AA CI +GI+ + + LE+L VPGRFE V ++ + Sbjct: 294 KEEILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIV-ESNEKFTV 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT + L +++ + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT D Sbjct: 353 VIDYAHTPDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMADFVIVTSD 412 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET I Sbjct: 413 NPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQI 472 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + ++++ IL Sbjct: 473 LKD-RTIPFDEREVVKNIL 490 >gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] Length = 486 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 155/501 (30%), Positives = 239/501 (47%), Gaps = 27/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ E+++ + + ++ V DSR ++ G +F+ I G DGH +I Sbjct: 1 MKLNHILEG--IEVLSVVGN-----EDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A +GA ++ ++ + + V++TRK ++ A+ + + Sbjct: 54 DSAYEKGARVFLIQDDVDFKE-------DCTYVKVEDTRKTMAKVAANFCEHPADKFDVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+ +F+ +I + IG + TTP + L K + Sbjct: 107 GVTGTNGKTSITTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L+ R+D G FTNL DH+D+H+T + Y AK +LF + Sbjct: 167 VDNGCDCCAMEVSSHSLELSRVDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFHKT 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 DD +++ + + G K + + + T+ Sbjct: 227 TQANII---NVDDEGGRKIYEAIKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTP 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D P+PG+F VYN L C +GID L L V GRFE V N +G Sbjct: 284 NHTEDIFIPVPGKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVP-NDKGI 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +L R G +I VFGCGGDRD KRP+MG I L+D I+T Sbjct: 343 SVIVDYAHTPDALENVLNTAREFVEGDLIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +DNPR+EDPE I +I+ G+ + +R EAI+ AIE K DV+++AGKGHE Sbjct: 403 NDNPRTEDPELIIKDILAGLDESNENYKVVMDRKEAIKEAIESAKKGDVILIAGKGHENY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ K D ++ RE+L Sbjct: 463 QILGT-VKHHFDDKEVAREVL 482 >gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] Length = 509 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 147/506 (29%), Positives = 242/506 (47%), Gaps = 21/506 (4%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + + +I +S+DSR I+ G +F+ + G K DG F +AI + Sbjct: 2 SRYLHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIER 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A ++S SL + + +++ + F+ A+ +GK ++ +TGT+ Sbjct: 62 GACAAIISKKASLLNPPT--NEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ + G S G + + + ++ TT + L L GV Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVE 179 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + ++E SSH L Q+R+ G FTNL RDH+DYH + ++YF AK LF L ++ Sbjct: 180 YGAMEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGG 239 Query: 244 AIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + E+ K+ + S + +++ + + + + + Sbjct: 240 PRSVINIDDKWGAKLAKELNKKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTPF 299 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--- 354 +F+ PL GEF + N L A G+ + G+ +L L K VPGR + + + Sbjct: 300 GVENFISPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVK 359 Query: 355 --GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT + L+ L R++T R+I VFGCGGDRD+GKR MG++A AD Sbjct: 360 EGYPLVIVDYAHTPDGLQNALIASRSLTKRRLICVFGCGGDRDKGKRSKMGEVAAKFADY 419 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +VT DNPR EDP +I +I GI + R AI+ AI K DV+++AGKGH Sbjct: 420 IVVTSDNPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLIAGKGH 479 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ + D + R+ L L Sbjct: 480 EDYQILKDQT-IYFDDREQARKALSL 504 >gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] Length = 506 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 168/519 (32%), Positives = 249/519 (47%), Gaps = 46/519 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L P + + +I + DSR ++AG +F A+ G DG+ F+ Sbjct: 1 MLLSELTKSVMP-------LEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA A+VV P + V + R +S A+ YG + + Sbjct: 54 DTAIKAGAVAVVVD--------GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++ ++ I ++SG+ + +G + TTP + L + L L Sbjct: 106 GITGTNGKTTITYLIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLREL 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 G V +E SSH L Q R+DG G FTNL RDH+DYH ++YF +KMRLF Sbjct: 166 IDMGAKGVVMEVSSHALQQRRVDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSEL 225 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + + + A++ DD Y +++ A G + ++V Sbjct: 226 LAADRIKPKRCAVVNIDDPYGPRIVQGAACPVLSYGISG--NAHVRAERVVFSVAGISCV 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + L G F +YN L A IA+ + + E LE VPGR E V N Sbjct: 284 LVTPQGQINLHSELLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVERVA-N 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 RG I VDYAHT ++LE +L+ + + GRII VFGCGGDRD+GKRP+MG+IA +D+ Sbjct: 343 DRGLTILVDYAHTGDALENVLRTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAGRYSDL 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453 +I+T DNPRSEDPEKI A + GI G+ +R EAIR A+ Sbjct: 403 SIITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAAVESRREAIRLAV 462 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++++AGKGHE I+ + EK D + + Sbjct: 463 AAARPGDIVLLAGKGHEDYQIIGS-EKHHFDDREEAAQA 500 >gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 501 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 168/501 (33%), Positives = 255/501 (50%), Gaps = 23/501 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + KI+ + DSR I G ++A+ G + DGH FI Sbjct: 1 MKLLTLLKDLPSHTLTGS-------PQVKISHLECDSRRILPGSCYIALKGTRADGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P+AI +GA A+V + + A + V+++R +SL + G+ ++ + Sbjct: 54 PEAIRRGACAVVAEMPCTQEAREA----GVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A + ++S L + IG + + TTP P+ L L + Sbjct: 110 GVTGTNGKTTTAYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G VS+E SSH LDQ R+ GI G FTNL +DH+DYH T + YF AK +LFE++ Sbjct: 170 YENGCRGVSMEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQM 229 Query: 238 LP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++ A+I DDAY + + + G + A + Sbjct: 230 AQDTKSRRKPVAVINIDDAYGRRLAEMFSGRMTVKTYGSALGADFRMLVHHATAKGSEYE 289 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +GK + PL G+F +YN+L A I GI + +L+ + VPGR E Sbjct: 290 LEYKGKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELFTHP 349 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G +I++DYAHT ++LE + K ++ + S R+I VFGCGGDRD+GKRP+MG A L+D Sbjct: 350 G-GAQIFIDYAHTPDALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLMGAAAARLSDA 408 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IVT DNPRSE+P I ++I G+P + +R AI TAIE D++++AGKGHE Sbjct: 409 CIVTSDNPRSEEPLSIISQIAAGMPEGRYAIIPDRARAIATAIEQARLGDIVLIAGKGHE 468 Query: 471 TVHIVTNGEKKMSVDCDIIRE 491 ++ G D +R Sbjct: 469 NYQELSTGRID-FSDAKEVRR 488 >gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] Length = 477 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 12/470 (2%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + ++SDSR + AG +FVA G+ DG +IPQAIA GA A++ + FS Sbjct: 15 SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEG----FSWPTDLQA 70 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L V + RK A YG ++ VTGT+GK+S ++ + IG Sbjct: 71 VNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 TTP PI L L+ QG ++E SSHGLDQ R++G+ Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDVA 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y A + P A++ A+DAY ++ + G V Sbjct: 191 VFTNLTRDHLDYHGDMDSY--AAAKRRLMEWPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G Q +H + Q++++ D + G F YN L +A+ + Sbjct: 249 LSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAVLATLLAMDV 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + L VPGR E G N+ + +DYAHT ++LE L+ +R T G++ V Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNAMPV-VVIDYAHTPDALENALQALREQTRGKLWCV 367 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446 FGCGGDRD GKRP+MG IA LAD +VT DNPRSE+P+ I A+I + +R Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AIE D+++VAGKGHET + G + D D++ +LG + Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476 >gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL1A] gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. NATL1A] Length = 509 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 148/506 (29%), Positives = 242/506 (47%), Gaps = 21/506 (4%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + + +I +S+DSR I+ G +F+ + G K DG F +AI + Sbjct: 2 SRYLHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIER 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A ++S SL + + +++ + F+ A+ +GK ++ +TGT+ Sbjct: 62 GACAAIISKKASLLNPPT--NEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ + G S G + ++ + ++ TT + L L GV Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVE 179 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + ++E SSH L Q+R+ G FTNL RDH+DYH + ++YF AK LF L + Sbjct: 180 YGAMEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDG 239 Query: 244 AIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + E+ K+ + S + +++ + + + + Sbjct: 240 PRSVINIDDKWGSILAKELNKKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTPF 299 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F+ PL GEF + N L A G+ + G+ +LE L K VPGR + + + + Sbjct: 300 GVGNFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVK 359 Query: 358 I-----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAHT + L+ L R++T R+I VFGCGGDRD+GKR MG++A AD Sbjct: 360 DGYPLVIVDYAHTPDGLQNALIASRSLTKKRLICVFGCGGDRDKGKRSKMGEVAAKFADY 419 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +VT DNPR EDP +I +I GI + R AI+ AI K DV+++AGKGH Sbjct: 420 IVVTSDNPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLIAGKGH 479 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ + D + R+ L L Sbjct: 480 EDYQILKDQT-IYFDDREQARKALSL 504 >gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168] gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus subtilis subsp. natto BEST195] gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] Length = 494 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 231/480 (48%), Gaps = 23/480 (4%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ +I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 18 DSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV---- 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 N P+++V + + LS+ + YG+ + + + +TGT+GK+S V +I +++G Sbjct: 74 -----NVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAG 128 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG I + TTP + L K ++ + V +E SSH L R+ Sbjct: 129 KRTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVH 188 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255 G FTNL +DH+DYH+T Y +AK LF A++ ADD S Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K K + + L G+F VYN Sbjct: 249 FEKVTAAHISTYGIKNDADVM--AKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYNV 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A CIA GI ++ E +E+LH V GRFE V + + VDYAHT +SLE +L+ Sbjct: 307 LAAVATCIAAGIPFEIITEAVEELHGVRGRFELV-NQQQEFPVIVDYAHTPDSLENVLET 365 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +T G++ VV GCGGDRD+ KRP M KIA++LAD I T DNPRSEDP I ++ G Sbjct: 366 CRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAG 425 Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + NR +AI AI K DV+++AGKGHET + N E D ++ + Sbjct: 426 VENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGN-ETFDFDDAEVAARAI 484 >gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] Length = 506 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 238/504 (47%), Gaps = 17/504 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ K + N + I + + + + ++S Q G +F+ + G + DG F Sbjct: 1 MKLRELLAK----IANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENIL 118 AIA GA A ++S + + + ++ D+ + A+ Y + + Sbjct: 57 ESAIASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLR 116 Query: 119 AVTGTSGKSSVAS----FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKA 173 + T + S + + +G + F Q TTP + L + Sbjct: 117 LIGVTGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQ 176 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L G +E SSH L Q R+ G FTNL +DH+DYHQ YF+AK +L Sbjct: 177 LQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKL 236 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + AII ADD+Y + ++++ S+ K + + + Sbjct: 237 FSSD-YLKGRAIINADDSYGERLIQQLPTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIM 295 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTN 352 + F PL G++ + N L A G + +G+D LV L + VPGR E Sbjct: 296 HTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQP 355 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +L+ R G++I VFGCGGDRD+ KRP MGKIA LAD+ Sbjct: 356 EQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKRPKMGKIAAQLADV 415 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 A+VT DNPR+E+PE I +++ GIP +E +R AIRTAI D +++AGKGH Sbjct: 416 AVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLIAGKGH 475 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E I+ EK D + R+ L Sbjct: 476 EDYQILGT-EKIHFDDREQARDAL 498 >gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8802] gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802] Length = 501 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 154/505 (30%), Positives = 247/505 (48%), Gaps = 20/505 (3%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 KLQDL+ K E+ P +R++ + ++S Q G +F+ + G + DG F Sbjct: 3 KLQDLLAKVPTIQEI------PPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQF 56 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 A+ GA A +++ + + +++ ++ + A+ Y + + Sbjct: 57 WTSALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKM 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ +S + +G T F Q TTP + L + L+ Sbjct: 114 IGVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQ 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G + +E SSH L Q R+ G + F+NL +DH+DYH+ + YF+AK LF Sbjct: 174 AVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSP 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 AII DDAY + +++ SV + + T+ Sbjct: 234 D-YLAKRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355 F PL G+F + N L A + +G+D V+ L + VPGR E V + + Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQE 352 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+I+ LAD+++V Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP + +R AI AI+ D +++AGKGHE Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDY 472 Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + ++ L + L Sbjct: 473 QILGT-EKIHFDDREQAKKALAVKL 496 >gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] Length = 490 Score = 342 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 256/504 (50%), Gaps = 27/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L++LI+ E++ + + +I+ + SDSR ++ G++FVA+ G DGH +I Sbjct: 1 MELKELIHPL--EVLEVVGNT-----DVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL- 118 AI +GA AIV +L D + + P+ + V ++ L S Y +N++ Sbjct: 54 QSAIGKGAAAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLIL 113 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ Sbjct: 114 VGVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMAR 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 174 MVEAGCEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP + A+ ADD +++ + + + V Sbjct: 234 -LPTSAFALTNADDKAGLVMLQNTAARKLTYSLRTLADFKGKILESHFEGTEMLVNGREV 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F F YN L G +++G D VL L LH V GRF+ + +G Sbjct: 293 MTRFVGRFN------AYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQ-TIQSPKGY 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L +I + +GR+I V GCGG+RD+GKRPIM K A L+D I Sbjct: 346 TAIVDYAHTPDALTNVLNSIHEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLI 405 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + + +R +AI+TA + K DV++VAGKGH Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAGKGH 465 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E V G K D + ++EI Sbjct: 466 EDYQEVK-GVKHHFDDREQLKEIF 488 >gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] Length = 483 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 153/501 (30%), Positives = 246/501 (49%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I V DSR + ++F+AI G K DG L++ Sbjct: 1 MKLIDILKGVNCEI--------KGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+VV ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAIAVVVDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTTKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L R++ + FTNL +DH+D+H + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A + + K + + + + +E Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGIEDFAYVM-AKDIRNSLDGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEISLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT + ++ +++ ++ +GR I++FG GGDRD+ KRP+MG+IA AD I+T Sbjct: 339 VFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDRIKRPLMGEIAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE+P +I ++I GI ++ NR EAIR A+ K DV+++AGKGHET Sbjct: 399 DNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ N + + +I++EIL Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478 >gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 483 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I+ V DSR + ++F+AI G K DG ++ Sbjct: 1 MKLIDILKGVNCEI--------KGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L +R+D + FTNL +DH+D+HQ + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNME----EYAKTKGKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A + + K + + + + +E Sbjct: 222 FKMAKSASVINIDDKYSSMMIESSKAKVLTYGIKDFAYVM-AKDIRNSLSGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFELVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + ++ I++ ++ +GR I++FG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP +I ++I GI ++ NR EAI A+ K DV+++AGKGHET Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ + + + +I++EIL Sbjct: 459 IIGD-KVIHFDEREIVKEILS 478 >gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium tumefaciens str. C58] gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Agrobacterium tumefaciens str. C58] Length = 489 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 14/494 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL + + +I +++DSR G +FVA+ G K DG ++ Sbjct: 1 MNLRDISGNAFPELK---ELLLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A V+ + ++ P+LVV + R +LSL ASR YGK P+ ++AV Sbjct: 58 KDA---------VAKGAVAVVSGHAVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASFV+QI +G ++ QIG T I+ +D LTTP P+ L L+ L+S Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+ L A FTNLGRDH+DYH T + Y AKMRLF+ L+ Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + + A AG V +VG G+++ LK+V +KQ + + +G Sbjct: 229 KGAPAVIFADDPWSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ +A L+ LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R TSGRII VFGCGGDRD+GKRPIMG++A L+DI IVTDDN Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSED IR+E++ G +E G+R EAIR A+ ML+ D L+VAGKGHE IV + Sbjct: 409 PRSEDAATIRSEVMAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGS-V 467 Query: 480 KKMSVDCDIIREIL 493 D + +R L Sbjct: 468 TLPFSDHEQVRSAL 481 >gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 483 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E+ I+ V DSR + ++F+AI G K DG ++ Sbjct: 1 MKLIDILKGVNCEI--------KGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA A+V ++V++ R ++ AS Y + + Sbjct: 53 EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I +R +G + I + TTP + L + S + Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV +V +E SSH L +R+D + FTNL +DH+D+HQ + + +L Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNME----EYAKTKSKL 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D +M + A + + K + + + + +E Sbjct: 222 FKMAKSASVINIDDKYSSMMIESSKAKVLTYGIKDFAYVM-AKDIRNSLDGVKFKVQIED 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + +PG F VYNAL A + +GI V E L ++ V GRFE V T Sbjct: 281 KKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFELVETGK-DFY 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + ++ I++ ++ +GR I++FG GGDRD+ KRP+MG++A AD I+T Sbjct: 339 VIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP +I ++I GI ++ NR EAI A+ K DV+++AGKGHET Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ + + + +I++EIL Sbjct: 459 IIGD-KVIHFDEREIVKEILS 478 >gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] Length = 484 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 172/500 (34%), Positives = 275/500 (55%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D++ +L+ +++I+ V+ DSR ++ IF+ I G DGH +I Sbjct: 1 MNLKDILKGIDYKLVQGS-------LDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA I+ +QD + N ++ V +TRK L+L Y + + + Sbjct: 54 QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I + +G IG + I + TTP + L + + + Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV + +E SSH L+ R+ G+ G FTNL RDH+D+H+T + Y+N+K +LF+ Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 + II DD Y K+V+K + + + + + K + ++ V Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNL 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355 K+ +F+ +PGE+ +YNAL A G C + I + E + K+ V PGR E TN Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIREGINKVIV-PGRCERTATNYNLP 342 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I +DYAHT + L+ IL+ R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIV Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPRSE+P KI +I+ GI + NR +AI+ A+++ + DV+V+AGKGHET Sbjct: 403 TSDNPRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + + +I+++IL Sbjct: 463 ILKD-KTIHFDEREIVKQIL 481 >gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] Length = 490 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 254/504 (50%), Gaps = 27/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L++LI+ E++ + + +I+ + SDSR ++ G++FVA+ G DGH +I Sbjct: 1 MELKELIHPL--EVLEVVGN-----ADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL- 118 AI +GA AIV L D + + + P+ + V ++ L S Y +N++ Sbjct: 54 QSAIEKGAAAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLIL 113 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ Sbjct: 114 VGVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMAR 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 174 MVDAGCEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP + A+ ADD +++ + + + V Sbjct: 234 -LPASAFALTNADDKSGLVMLQNTAAKKLTYSLRTLADFKGKILESHFEGTEMLVNGREV 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F F YN L G +++G D VL L LH V GRF+ + G Sbjct: 293 MTRFVGRFN------AYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQ-TIQSPLGY 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + +GR+I V GCGG+RD+GKRPIM K A L+D I Sbjct: 346 TAIVDYAHTPDALTNVLSGIHEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLI 405 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + + +R +AI+TA + K DV++VAGKGH Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAGKGH 465 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E V G K D + ++EI Sbjct: 466 EDYQEVK-GVKHHFDDREQLKEIF 488 >gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] Length = 491 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 158/474 (33%), Positives = 242/474 (51%), Gaps = 13/474 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ ++++S+ ++ G +F AI G K DGH FI AI GA A+V+S + +S Sbjct: 19 KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYP- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++ DN RK + ++R Y E ++ VTGT+GK++V + + Q + +G ++ Sbjct: 78 DVTFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGI 137 Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + TTP I LS + +G +V E SSH +DQ+R+ G Sbjct: 138 IGTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGTVFH 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL +DH+DYH+ + YF K + ++ E DD Y + + + + Sbjct: 198 GGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKSC 257 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + + G L GEF +YN A + Sbjct: 258 MNTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSYLL 317 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G D + EKL + GRFE T + + DYAHT +++E IL ++ I R Sbjct: 318 RSGFDIDFLHHATEKLKPIRGRFE---TVEKDFLVVNDYAHTPDAIEKILMSLNQIKKNR 374 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 II+VFG GGDRD+GKRP+MGKIA +LADI I+T DNPRSEDP +I +I G+ Sbjct: 375 IIIVFGAGGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRIIEDIKSGMKMEKEIY 434 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E +R EAI+ AIE+ K D++++AGKGHET I+ + + D D+ ++ LG Sbjct: 435 EIIDREEAIKKAIEIARKDDIVLIAGKGHETYQIIGD-KTYYFDDLDVAKKYLG 487 >gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] Length = 490 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 245/503 (48%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ + P I + DSR ++ G +F+ I G DGH F Sbjct: 1 MKLQTLLSYL-------HDLTPYVGENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ GA AI+ + + P++VV ++R+ +++ A YG+ + + Sbjct: 54 KQAVENGAVAIIAERPLDV---------DVPVIVVRDSRRAMAVLADAFYGQPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++QI +++ + IG I A + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVHIKIGDDAYPTQNTTPESLLLQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + +GV +E SSH L R+ G FTNL +DH+DYH T + Y NAK Sbjct: 165 ADEGVDVAIMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ DD S+ + A + I K++ + N Sbjct: 225 GNRYDHERPKFAVLNNDDPASQYY--KHMTAATVITYGTKTDSDIMAKRIDIVPNGMAFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G F VYN L A C+ GI +++E +E++ V GRFE V Sbjct: 283 LITPHGTARVKTKLIGLFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVAGRFETV-DE 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + + VV GCGGDRD+ KRP+M K+A+ AD+ Sbjct: 342 GQDFTVIVDYAHTPDSLENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMAKVAVQYADV 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDPE+I ++ G+P ++ +R EAI AIE + D++++AGKGHE Sbjct: 402 AIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIVLIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D + RE + Sbjct: 462 TYQIIGD-RVIAFDDRLVAREAI 483 >gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 209/498 (41%), Positives = 290/498 (58%), Gaps = 20/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L E P + R+I ++ DSR + +F A+ G K DG + Sbjct: 1 MRLDALFPDALIE--------PPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+A+ +GA A+V + S+ +A ++ V + R L++ ++R Y + PE ++AV Sbjct: 53 PEAVRRGALAVVTEQSASVPFETAA------LVKVADVRSALAIASARFYARQPETVVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI G + +G ++ LTTP PI L + L L+ Sbjct: 107 TGTSGKTSVAAFARQIWASLGFKAASVGTLGVVAPDGASYGGLTTPDPISLHRTLDELAG 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASSHGLDQHRLD ++L A FTNL RDH+DYH T +AYF AK+ LF +LP Sbjct: 167 AGVTHLALEASSHGLDQHRLDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + ++ AD + EV+ A G +V S+G+ G+ +HL + + ++ GKD Sbjct: 227 ADGTVVVDADSSAGHEVIDVAKARGLKVFSLGFAGETLHLLEARPEAAATLLRLTFAGKD 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G FQ NAL+AAGLCI+ G V LE+L PGR E VG RG I+ Sbjct: 287 WALRLPLVGSFQAANALMAAGLCISTGAAPDAVFAALERLEGAPGRLEKVG-ERRGASIF 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE L+ +R T R+IV+FGCGGDRD GKRP+MG+IA LAD IVTDDN Sbjct: 346 VDYAHKPDALEKALQALRPFTQKRLIVIFGCGGDRDAGKRPLMGEIAARLADHVIVTDDN 405 Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PRSEDP+ IR I+ G P E G+R AI++ I ML D+L++AGKGHET I+ Sbjct: 406 PRSEDPDLIRKAILQGAGSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKGHETGQILA 465 Query: 477 NGEKKMSVDCDIIREILG 494 + D D R L Sbjct: 466 D-RTLPFSDRDCARAALE 482 >gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] Length = 487 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 157/506 (31%), Positives = 245/506 (48%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ P + + + ++ V+ DSR I+ G +FVA+ G + DGH FI Sbjct: 1 MKLQELLKNIEP-------VQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+A+ GA++++ D + V +T + A+ YG ++ Sbjct: 54 PKALELGAKSVLCE------DMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I A TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G++ G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VEAGCEYAFMECSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K + AI ADD +++ + + + ++ G Sbjct: 227 LSKTAFAITNADDKNGMIMVQNTKATVKTYSTRSMADFRARILECHFGGMYLEIDGREVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL + LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPI-QSPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQSDKVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G + I +R EAIRTA + K DV++VAGKGH Sbjct: 400 ITSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + G K D ++IR+I G+ Sbjct: 460 EDYQEIK-GVKHHFDDKEVIRDIFGI 484 >gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] Length = 477 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 12/470 (2%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + ++SDSR + AG +FVA G+ DG +IPQAIA GA A++ + FS Sbjct: 15 SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEG----FSWPADLQA 70 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L V + RK A YG ++ VTGT+GK+S ++ + IG Sbjct: 71 VNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 TTP PI L L+ QG ++E SSHGLDQ R++G+ Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDIA 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y A + P A++ A+DAY ++ + G V Sbjct: 191 VFTNLTRDHLDYHGDMDSY--AAAKRRLMEWPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G Q +H + Q++++ D + G F YN L +A+ + Sbjct: 249 LSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAVLATLLAMDV 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + L VPGR E G N+ + +DYAHT ++LE L+ +R T G++ V Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNAMPV-VVIDYAHTPDALENALQALREQTRGKLWCV 367 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446 FGCGGDRD GKRP+MG IA LAD +VT DNPRSE+P+ I A+I + +R Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AIE D+++VAGKGHET + G + D D++ +LG + Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476 >gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 484 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 274/500 (54%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D++ +L+ +++I+ V+ DSR ++ +F+ I G DGH +I Sbjct: 1 MNLKDILKGIDYKLVQGS-------LDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA I+ +QD + N ++ V +TRK L+L Y + + + Sbjct: 54 QKAIENGASVII------MQDEIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I + +G IG + I + TTP + L + + + Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV + +E SSH L+ R+ G+ G FTNL RDH+D+H+T + Y+N+K +LF+ Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 + II DD Y K+V+K + + + + + K + ++ V Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355 K+ +F+ +PGE+ +YNAL A G C + I + + K+ V PGR E TN Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVIV-PGRCERTATNYNLP 342 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I +DYAHT + L+ IL+ R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIV Sbjct: 343 YDIIIDYAHTPDGLKNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPRSE+P +I +I+ GI + NR +AI+ A+++ + DV+V+AGKGHET Sbjct: 403 TSDNPRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + + +++++IL Sbjct: 463 ILKD-KTIHFDEREVVKQIL 481 >gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8801] gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801] Length = 501 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 247/505 (48%), Gaps = 20/505 (3%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 KLQDL+ K E+ P +R++ + ++S Q G +F+ + G + DG F Sbjct: 3 KLQDLLAKVPTIQEI------PPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQF 56 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 A+ GA A +++ + + +++ ++ + A+ Y + + Sbjct: 57 WTSALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKM 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ +S + +G T F Q TTP + L + L+ Sbjct: 114 IGVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQ 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G + +E SSH L Q R+ G + F+NL +DH+DYH+ + YF+AK LF Sbjct: 174 AVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSP 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 AII DDAY + +++ SV + + T+ Sbjct: 234 D-YLAKRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355 F PL G+F + N L A + +G+D ++ L + VPGR E V + + Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQE 352 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+I+ LAD+++V Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP + +R AI AI+ D +++AGKGHE Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDY 472 Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + ++ L + L Sbjct: 473 QILGT-EKIHFDDREQAKKALAVKL 496 >gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] Length = 487 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 236/502 (47%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L ++ + +I + DSR + +G +F I G DGH F Sbjct: 2 MKLSELT-----NVLRSYEWKNEG--DPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ +GA A++ + P ++V +T++ ++ A+ YG + + Sbjct: 55 KQAVEKGAVALIAEREVKGVE--------VPTIIVQDTKRTMARLANLFYGDPTSKMNLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + + IG I + TTP I L K + Sbjct: 107 GVTGTNGKTTVTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 V +E SSH L R+ G FTNL DH+DYH+T +AY AK Sbjct: 167 VDADVETALMEVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQL 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + A++ DD + E++K + + T+ Sbjct: 227 GNRFTEGKVAVLNRDDEAADELLKMTTVDVLTYGVENKADIM--AEDIEITARGTTFTLK 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F VYNAL AA IA GI + + LE +H V GRFE V Sbjct: 285 AGTESIEIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVDAGQ- 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHTS+SLE +L +R G+I VV GCGGDRD+ KRP+M +IA AD AI Sbjct: 344 DYTVIVDYAHTSDSLENVLTTVREFAKGKISVVVGCGGDRDRTKRPVMAEIATKYADNAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP++I ++ HG+ + +R EAI AI NK D+LV+AGKGHET Sbjct: 404 FTSDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ D ++ ++ + Sbjct: 464 QIIGANTT-HFDDREVAKQAIE 484 >gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] Length = 511 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 162/504 (32%), Positives = 248/504 (49%), Gaps = 16/504 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + S+ ER + +S++S Q G IF+ + G + DG F Sbjct: 16 MKLHDLLNNVP----SISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFW 71 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ GA A ++S + + + +++VD+ + A+ Y + N++ Sbjct: 72 QSAMEVGATAAMISPQAAEKFPPT---DDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMI 128 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + + IG F Q TTP L + L+ Sbjct: 129 GVTGTNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEA 188 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S + +E SSH L Q R+ FTNL +DH+D+H+ + YF AK LF Sbjct: 189 VSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPD 248 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DD Y K +++ SVG + + + N T+ Sbjct: 249 -YLQEKAIINLDDPYGKRLIESLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPL 307 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 +F PL G+F + N L A + +G+D ++E L VPGR E V N + Sbjct: 308 GTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDI 367 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE LK R G++I VFGCGGDRD+ KRP+MG+ + +LAD+++VT Sbjct: 368 TVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELADVSVVT 427 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I +I+ GIP +E +R EAI+TAI D +++AGKGHE Sbjct: 428 SDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQ 487 Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + + L + L Sbjct: 488 ILGT-EKIHFDDREEAGKALEIRL 510 >gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] Length = 483 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 163/502 (32%), Positives = 267/502 (53%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ +I + ++I ++ DSR ++ G +FV I G DGH + Sbjct: 1 MNLNLILKSLEYSIIKEDK--------KEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA+ IV + + I+ V ++RK L++ +S YG + I+ Sbjct: 53 KKAYDNGAKVIVCEKDLE----DLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKII 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I +++G +G + I + ++ TTP + L K + Sbjct: 109 GITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V + +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ Sbjct: 169 VDEKVDYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +I DD+Y ++V+K+A G ++ + + + + + + Sbjct: 229 QNS----VINIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKN 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + +PG++ +YNAL + G C+ GI + E LE + VPGR E V N G Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I +++ GI +I R +AIR A+EM + DV+VVAGKGHE I Sbjct: 403 SDNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKGHEDYQI 462 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + + + + ++I E++ I Sbjct: 463 LKD-KTIHFDEREVIEELIKEI 483 >gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Rhizobium leguminosarum bv. viciae 3841] Length = 489 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 231/495 (46%), Positives = 313/495 (63%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR + G FVA+ G K DG FI Sbjct: 4 MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRKVMPGNAFVAVAGTKADGAGFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A ++ S + ++ P+ V R+FLS+ A+R +G+ P+ ++AV Sbjct: 61 VDA---------AGRGAAIAIASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L L+ L+ Sbjct: 112 TGTAGKTSVASFTRQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAG 171 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 172 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 231 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + +K A +AG + +VG +G ++ LK+V +KQ I + G+ Sbjct: 232 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+++ + + LEKL GR E VG G Y Sbjct: 292 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAY 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 352 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 411 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ E +R AIR A+ ML D L+VAGKGHE + G Sbjct: 412 PRSEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKGHEEGQTIG-GV 470 Query: 480 KKMSVDCDIIREILG 494 D +R+ L Sbjct: 471 TLPFSDHAEVRKALE 485 >gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechocystis sp. PCC 6803] gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803] Length = 505 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 241/504 (47%), Gaps = 18/504 (3%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERK-----INEVSSDSRHIQAGWIFVAIVGNKEDG 56 KL L+ PE++ + + +S++S G +F+ + G + DG Sbjct: 3 KLGQLLASV-PEVVAAAPWLAQESDRCPALGKIVTGLSTNSHACPPGTLFIGMPGTRVDG 61 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 F A+ GA A VVS + ++ ++ V + + A+ Y + Sbjct: 62 GEFWSGALEAGAIAAVVSEKALQKFPP---QNGECVIAVPDLVPVCAGLAAAFYQHPAQT 118 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 ++ VTGT+GK++ + ++ + SS +G + + TTP L K Sbjct: 119 LQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTLYTRWPGYQKTATHTTPFATDLQKQ 178 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ G + +E SSH L Q R+ FTNL +DH+D+H T + YF AK L Sbjct: 179 LAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGTMENYFAAKALL 238 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+E + A+I DD Y + ++ R SV + K + + T Sbjct: 239 FKES-YLQGRAVINQDDPYGQRLIDRLPLDQVYTYSVNDSTADFYTKDLDYQPTGVKGTF 297 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTN 352 +F FL PL G+F + N L A + +G+D A +++ L VPGR E Sbjct: 298 VTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFPGVPGRMEQVQIRP 357 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE LK R GR+I +FGCGGDRD+ KRP+MG IA LAD+ Sbjct: 358 DQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKRPLMGNIAAQLADL 417 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 A+VT DNPR+EDPE+I A+++ GI IE G+R AI AI D +++AGKGH Sbjct: 418 AVVTSDNPRTEDPEQILADVVQGISLDIEPWIIGDRATAIHKAIREAKPGDGVLIAGKGH 477 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E I+ EK D + RE L Sbjct: 478 EDYQILGT-EKIHFDDREQAREAL 500 >gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] Length = 486 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 198/500 (39%), Positives = 281/500 (56%), Gaps = 20/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L + I V++DSR G +F A+ G K+DG FI Sbjct: 1 MRLSQLFALC--------GTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQAI+QGA A++V + D + P++V + + L+ AS L G P I A+ Sbjct: 53 PQAISQGAAAVIVDQETARPDSA------VPVIVRPDAKHLLACMASALAGPQPSCIAAI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLS 178 TGT+GKSS A F++Q+ G + +G IS LTTP P+ L++ L+ L+ Sbjct: 107 TGTNGKSSTADFLRQLWILQGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALA 166 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GV HV++EASSHGL+QHRLDG+ L A F+NL RDH+DYH T +AY AK+RLF+E+L Sbjct: 167 RNGVEHVALEASSHGLEQHRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVL 226 Query: 239 PKESPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 P A + AD + A ++ SVG G + L + + Q + +++ Sbjct: 227 PTGGIAAVNADMDSETFSALQDIAARRSLKLRSVGRNGTTLRLIEARPTPSGQILRLALH 286 Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ LPG FQ N ++AA +C D+ V+ L +L V GR E G Sbjct: 287 GEELPEISLSLPGRFQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERAVALPNG 346 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 YVDYAHT ++L+ +L ++R T+GR++VVFG GGDRD+GKRP+MG +A +AD+AIV Sbjct: 347 AAAYVDYAHTPDALDCVLSSLRPHTTGRLVVVFGAGGDRDRGKRPLMGAVAARMADLAIV 406 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPR+E+P IR+EI+ P +E +R AI +E L D+LVVAGKGHE IV Sbjct: 407 TDDNPRTEEPSSIRSEILAACPDALEIADRRSAIAAGLEALQPGDILVVAGKGHEQGQIV 466 Query: 476 TNGEKKMSVDCDIIREILGL 495 E D +IRE+ G+ Sbjct: 467 GT-EILPFDDRLVIRELAGV 485 >gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] Length = 494 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 165/500 (33%), Positives = 243/500 (48%), Gaps = 19/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + + + +++ + ++S AG +F+ I G + DG F Sbjct: 1 MKLRELLAAVD-------GVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFW 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+A GA A +VS ++ ++ N K + ++ YG + +L Sbjct: 54 QSALASGAVAAIVSPEAVQKNPPTPESL---VISASNMNKACAQISAAFYGYPGQQLRML 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + L + +G F+Q TTP + L + L+ Sbjct: 111 GVTGTNGKTTTTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQA 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH L Q R+ G FTNL +DH+DYHQ + YF AK LF Sbjct: 171 VDAGCEFGVMEVSSHALAQDRVFGCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPD 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD Y + ++ SV + + + + Sbjct: 231 -YLQGRAIINADDEYGQRLITGLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPK 289 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 D F PL G++ + N L A + +G+D LV + K VPGR E V + Sbjct: 290 GDVAFSSPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDV 349 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SL +LK++R GRII VFGCGGDRD+ KRP MGKIA +LADIA+VT Sbjct: 350 SVIVDYAHTPDSLGNLLKSVRAFIPGRIICVFGCGGDRDRTKRPKMGKIAAELADIAVVT 409 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPE+I +I+ GIP + +R AIR AI D +++AGKGHE Sbjct: 410 SDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + RE L Sbjct: 470 ILGT-EKIHFDDREQAREAL 488 >gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 227/480 (47%), Gaps = 23/480 (4%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ +I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 18 DSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDV---- 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + P+++V + + LS+ + YG+ + + + +TGT+GK+S V +I +++G Sbjct: 74 -----DVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAG 128 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG I + TTP + L K ++ + V +E SSH L R+ Sbjct: 129 KRTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRVH 188 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255 G FTNL +DH+DYH+T Y AK LF A++ ADD S Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K K + + L G+F VYN Sbjct: 249 FEKVTAAHISTYGIKNNADVM--AKNITITAQGTSFDLVTNKGTKHITMSLVGQFNVYNV 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A CIA GI + +E+LH V GRFE V + + VDYAHT +SLE +L Sbjct: 307 LAAVATCIAAGIPFETITAAVEELHGVRGRFELV-NQQQEFPVIVDYAHTPDSLENVLNT 365 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +T G++ VV GCGGDRD+ KRP M KIA++LAD I T DNPRSEDP I ++ G Sbjct: 366 CRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAG 425 Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + NR +AI AI K DV+++AGKGHET + + E D ++ + Sbjct: 426 VENEYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGS-ETFDFDDAEVAARAI 484 >gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. WCH70] gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70] Length = 490 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 158/503 (31%), Positives = 241/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ I + DSR ++ G +F+ I G DGH F Sbjct: 1 MKLQTLLSYL-------HDFTTYVGENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ GA A++ + + P++VV ++R+ +++ A YG+ + + Sbjct: 54 KQAVENGAVAVIAERPLDV---------DVPVIVVRDSRRAMAMLADAFYGQPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I +++ + IG I + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 +GV +E SSH L R+ G FTNL +DH+DYH T + Y NAK Sbjct: 165 VDEGVDVAVMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ DD SK + A + I KK+ + + Sbjct: 225 GNRYDHERPKFAVLNNDDPASKYY--KHMTAASVITYGIETDSDIMAKKIDIVPSGMSFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G F VYN L A C+ GI +++E +E++ V GRFE V Sbjct: 283 LITPNGTVRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISGVAGRFETV-DE 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK IR ++ VV GCGGDRD+ KRP+M K A+ AD+ Sbjct: 342 GQNFTVIVDYAHTPDSLENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPLMAKTAVKYADV 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDPE+I ++ G+P ++ +R EAI AIE + D++++AGKGHE Sbjct: 402 AIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIILIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D + RE + Sbjct: 462 TYQIIGDRVID-FDDRLVAREAI 483 >gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 486 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 162/496 (32%), Positives = 262/496 (52%), Gaps = 28/496 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + + +I ++ DSR + G +F AI G DG+ FI Sbjct: 1 MKLKKLLNHI---------GISYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P+AI +GA A++ +A ++ +S + P + V + R+ +L S+ +G+ + ++ Sbjct: 52 PEAIKKGAVAVISDNAEVVKLYSKKYK--VPFIYVKDIREKEALIVSKFFGEPSKKLKVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VTGT+GK++ + + + + G + IG + + + TTPS + K L Sbjct: 110 GVTGTNGKTTTSYIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREF 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q + V E SSHGL+ HR+ GIK FTNL +DH+D+H+ YF +K +LF Sbjct: 170 LDQKIEFVVSEVSSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLFFL- 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +S ++I DD + K + C +++ G GK ++ V ++T+ +E Sbjct: 229 --TKSISVINIDDPFGKVLSGLRAIFPCELITYGKNGKV-KIENVENKKFGSEITLRLEN 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + L GE+ YN A L +++G + + + E + V PGR E V N Sbjct: 286 KRYVIKTNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-PGRLEEVVEN----- 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +++DYAHT ++LE +L + I G++I VFGCGGDRD+ KRP MGK+A +D I+T+ Sbjct: 340 VFIDYAHTPDALEKVLTVLSQIKKGKLITVFGCGGDRDREKRPFMGKVAEKFSDRVIITN 399 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE+P KI +I+ GI I NR EAI A+E D++++AGKGHE I Sbjct: 400 DNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKGHENYQI 459 Query: 475 VTNGEKKMSVDCDIIR 490 + N +K D +++ Sbjct: 460 IGN-KKIHFSDREVVE 474 >gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] Length = 484 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 160/504 (31%), Positives = 242/504 (48%), Gaps = 31/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ+L+ I + + I V+ DSR I G FVA+ G + DGH FI Sbjct: 1 MNLQELLKSIKSLAI-------IGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AI GA+AI+ D + V +T + + A+ YG + ++ Sbjct: 54 PKAIELGAKAILCE------DMPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I TTP I L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH + Q R+ G+ FTNL RDH+DYH T + Y NAK F++ Sbjct: 168 VDAGCEYVFMECSSHAIAQRRIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + AI ADD +++ + ++ V + G Sbjct: 227 LPKSAFAITNADDKNGMFMVQNTKATIKTYSMERMADFRARIIEMHFAGMYLNVDGNDVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G +G +L L LH V GR E + +S G Sbjct: 287 VQFIGKFNVS------NLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPI-QSSEGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L +L IR + G+II V G GG+RD+GKRP+M + A+ +D I+T Sbjct: 340 AIVDYAHTPDALANVLNAIREVDKTGQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIIT 399 Query: 417 DDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR E+P+ I +++ G + + +R EAI+TA + K DV++VAGKGHE Sbjct: 400 SDNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKGHEN 459 Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495 + G K D ++IREI G+ Sbjct: 460 YQEIK-GVKHHFDDREVIREIFGI 482 >gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 496 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 157/505 (31%), Positives = 244/505 (48%), Gaps = 27/505 (5%) Query: 8 YKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K+ EL+ + I V+ DSR + G +F+ + G+K DGH +I QA A Sbjct: 2 AKNLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAG 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++V S++ ++ V +TR + + + ++ VTGT+ Sbjct: 62 GAVAVLVEKEVSVE-------PGMTVIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ ++ I ++G IG T I + TTP + L L+ + + G+ Sbjct: 115 GKTTTTHLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMD 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH L +R G + G FTN+ RDH+D+H T + Y +AK LF + ++ Sbjct: 175 YAVMEVSSHALALNRTAGCEFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNV 234 Query: 244 -----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+I DD + +++ G + + + + + Sbjct: 235 KTGKSAVINTDDPAAAHMLREVTYRAITYGVQD--GADLTARNINIQADGAKFEAVTTRG 292 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F VYN L A G+ +A GI+ +V LE VPGRFE V + Sbjct: 293 IIPLALQITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAGQ-PFTV 351 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE ILK R RII VFGCGGDRD+ KRPIMG++A + AD+ + T D Sbjct: 352 IVDYAHTPDGLENILKTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATSD 411 Query: 419 NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPR+EDP I EI GI + +R +AI A+ + QD++++AGKGHET Sbjct: 412 NPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGKGHET 471 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D ++ REI+ + Sbjct: 472 YQILKD-KTIPFDDREVAREIIREM 495 >gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 150/496 (30%), Positives = 230/496 (46%), Gaps = 19/496 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ I + P + + +++ + SD+R ++ IFVAI G DGH FIP+AI Sbjct: 1 MLASTLISEIKFKVVSPKDYDDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIR 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 +GA+AIVV I+ V+NT + L++ A + YG ++ VTGT Sbjct: 61 KGAKAIVVQEETDDI-------QGVTIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGT 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++V ++ I + + IG TTP + L K + + + V Sbjct: 114 NGKTTVTHMIEAIFRDQKDRTGLIGTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENV 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239 ++E SS L Q R+ GI + FTN +DH+DYH+T Y +AK Sbjct: 174 KAAAIEVSSIALIQGRVWGIDVDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYG 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+I DD K + I V + V + Sbjct: 234 NDKTAVINIDDEMGKNFAQDTATQVLTYGIKN--DAMIKASNVNIHSQGTDFDLKVFEDE 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G A G+ ++E LEK V GR + + ++ G Sbjct: 292 YHLHVKTVGMFNVYNLLAAFGAAYANGVSVHAIIESLEKFPGVKGRLQLI-SSDCGISAI 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDY+HT + L L+ I SG + V GCGGDRD KRP M +IA++ ++ I T DN Sbjct: 351 VDYSHTPDGLLNALETINEFASGDVYCVVGCGGDRDATKRPKMAQIAVEYSNHPIFTSDN 410 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PR+EDPEKI +++ G+P +R EAI+ A+ N D++++AGKGHE I+ + Sbjct: 411 PRTEDPEKILDQMLSGVPEKNVPVYLDRREAIQAAVNAANPGDIILIAGKGHEDYQIIGH 470 Query: 478 GEKKMSVDCDIIREIL 493 K D + + L Sbjct: 471 -TKHHFDDAEEATKAL 485 >gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 500 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 171/499 (34%), Positives = 267/499 (53%), Gaps = 26/499 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DLI + ++ ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 16 KLKDLIENI------DVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYID 69 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AI GA +VV + I + NTRK L++ ++ +G ++ + Sbjct: 70 EAIKNGARLVVVDEFFDTSKIDGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLIG 125 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S ++ I + + IG + I S + + TTP L K + Sbjct: 126 VTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 185 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++GV V +E SSH L+ +R+ G FTNL +DH+D+H T + YF AK++LFE Sbjct: 186 NEGVDSVVMEVSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSK 245 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A DD++ K +++ + + K V NK Q + GK Sbjct: 246 KRVVNA----DDSWGKRIIEMYPDCVT---YAKDSDAQVCTKNVKLFVNKNQFELWYNGK 298 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + +PG F +YN+L AA CI++GI+ + + LE L VPGRFE V +N R I Sbjct: 299 KEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FTI 357 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT D Sbjct: 358 VIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSD 417 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET I Sbjct: 418 NPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQI 477 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + I+++IL Sbjct: 478 LKD-RTIPFDERKIVKDIL 495 >gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] Length = 531 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 167/522 (31%), Positives = 257/522 (49%), Gaps = 37/522 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI + N + + + + +SR ++ +F AI GN DGH+F+ Sbjct: 1 MKLSRLIDGLKADQRNPVLEITGAQGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 A+ +GA A+V ++ V ++R+ L+ AS +G+ E + Sbjct: 61 QDAVKKGAAAVVTEEPVEA-------PIGVAVIRVKDSRRALANMASEFFGRPTEKLKLA 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V F + + +G +G S +++ +TTP + L + L+ + Sbjct: 114 GITGTNGKTTVTYFAEAMLGAAGCKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARM 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GVTH +E SSH L Q R + AG FTN+ +DH+DYH+ ++YF AK LF++L Sbjct: 174 VDAGVTHAIIEVSSHALTQSRPAFCQFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDL 233 Query: 238 L----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 L + A+I DD + + + +G I V A + + + Sbjct: 234 LAASTKENKTAVINLDDPQGAVLCREVKTPVL--CTGLTEGSSIRSIDVKAGADGLKGVM 291 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + F P G +YN + AAG+ +A G+ V L VPGR E V N Sbjct: 292 ETPAGELVFESPAVGRHNLYNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKV-ENG 350 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 ++VDYAHT ++LE +L+ +R ++ +II VFGCGGDRD+GKRP MG A +D+ Sbjct: 351 LDRHVFVDYAHTPDALENVLEALRRVSKAKIITVFGCGGDRDKGKRPKMGAAAARHSDLV 410 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------------------FIEKGNRIEAIRTAIE 454 +VT DNPRSEDPE I +I+ GI G F+ + +R +AI TAI Sbjct: 411 VVTSDNPRSEDPEAIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAIM 470 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 D++++AGKGHET IV NG + D R L + Sbjct: 471 SSGPGDLVLIAGKGHETYQIVKNG-RFAFDDRVEARNALECL 511 >gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] Length = 494 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 148/500 (29%), Positives = 236/500 (47%), Gaps = 22/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +++ + + + ++ ++ DSR + G +F A G+K DG F Sbjct: 1 MNLGEILSS-----VKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFA 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 A+A+GA A++ S A + V++ R L+L A +G+ E + Sbjct: 56 ADALARGAVAVISES-------LAPPDLAARWIQVEHGRHALALAARTFFGRPDERLGLT 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A + + +G + IG + TTP + L + S L Sbjct: 109 GITGTNGKTTTAYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDL 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G THV++E SSH L R+ G+ FTNL RDH+D+H + YF AK LFE Sbjct: 169 LRAGGTHVTMEVSSHALALGRVHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGA 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D + R H R+ + + + + + + Sbjct: 229 GGNPPRFAVLNTDDEYSRRL-RLHARTERLWYGMTPEADLRPRHIVSSFKGLRFDLQFRK 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F PL G+ VYN L A + G+ +V + L VPGRFE V + Sbjct: 288 QRFTIESPLIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERV-DEGQPFV 346 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L ++ R + R+I +FGCGGDRD+ KRP+MGK A + +D ++T Sbjct: 347 VVVDYAHTDDALRNVIAVARGLNPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTS 406 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP I + + GI + + +R AIR AI+ + D++++AGKGHET Sbjct: 407 DNPRSEDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKGHETYQ 466 Query: 474 IVTNGEKKMSVDCDIIREIL 493 ++ + D + RE+L Sbjct: 467 VLKDKTID-FDDRAVAREVL 485 >gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] Length = 508 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 152/514 (29%), Positives = 247/514 (48%), Gaps = 39/514 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +++ ++ + +I+ ++ DSR ++ G +F A+ G DGH + Sbjct: 1 MKLS--------QIVADVTSQGELAADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 A+ +GA A+VV L D +VVD++R ++ A+ Y + +L Sbjct: 53 KSAVERGAVAVVVEQPVDLPD-------EIVQVVVDDSRYAMARCAACFYDYPAQGMLIV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++ ++ + +++G + +G + + A + TTP + L + L+ Sbjct: 106 GVTGTNGKTTMTYLLESVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEF 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 SQG + +E SSH L Q R+ G+ FTNL +H+DYH+ ++YF AK RLF+E Sbjct: 166 KSQGADALVIEVSSHALMQSRVVGLTFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEP 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D K + ++G + + V T+ Sbjct: 226 QIYGDFTAVVNTDDPYG--AKLVRELNEPLSVGMHRGADVRVCDVEQTMQGTVATLETPQ 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F + N L A G + + + + + L + VPGR E V N+ G Sbjct: 284 GEITVRSPLVGPFNLENLLCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPV-DNTLGAL 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VDYAHT ++L L+ + + RII VFGCGGDRD KRP MG++A +D++IVT Sbjct: 343 IVVDYAHTGDALAKALEAMAALKPQRIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIVTS 402 Query: 418 DNPRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQD 460 DNPR+E+P KI +I GI ++ +R EAI A+ L D Sbjct: 403 DNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRAGD 462 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +L++AGKGHE ++ +K D + +R L Sbjct: 463 LLLIAGKGHEDYQVIGT-QKIHFDDREQVRLALE 495 >gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] Length = 501 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 248/503 (49%), Gaps = 16/503 (3%) Query: 6 LIYKDFPELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L K L+N LS P ER++ +S++S Q G IF+ + G + DG F Sbjct: 2 LTSKKLQYLLNNLSNIPSLPNHSALEREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQ 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 A+ GA A ++S + + + + +++V++ + A+ Y + ++ Sbjct: 62 SAMEVGAVAAIISPQAAQKFPP---KDDDCVIIVEDIITVAAQIAAAFYDYPAQQLKMVG 118 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT+GK++ V+ + + IG F + TTP L + L+ Sbjct: 119 ITGTNGKTTTTHLVEYFLNQCQKPTALIGTLYTRWPGFERTAVHTTPFAPELQEQLAEAV 178 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + +E SSH L Q R+ FTNL +DH+D+H+ + YF AK LF Sbjct: 179 AANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPD- 237 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AI+ DD Y K ++ SV + + N T++ Sbjct: 238 YLQEKAIVNLDDPYGKRLIDSFQTEQVWTYSVEDTKADFYTSNLTYQANGVTGTLTTPFG 297 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357 + +F PL G+F + N L A + +G+D V+E L VPGR E V N + Sbjct: 298 NIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFLGVPGRMERVQINDKQDIS 357 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+ + LAD+++VT Sbjct: 358 VIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKRPLMGQASAQLADVSVVTS 417 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP++I +++ GIP IE +R +AI TAI N D +++AGKGHE I Sbjct: 418 DNPRTEDPQRILEDVLTGIPETIEPLVISDRAKAINTAILQANPGDGVLIAGKGHEDYQI 477 Query: 475 VTNGEKKMSVDCDIIREILGLIL 497 + EK D + R+ L + L Sbjct: 478 LGT-EKIHFDDREEARKALEIRL 499 >gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] Length = 484 Score = 339 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 273/500 (54%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D++ +L+ +++I+ ++ DSR + IF+ I G DGH +I Sbjct: 1 MNLKDILKGIDYKLVQGS-------LDKEISSINYDSRKVNKSDIFICIKGYATDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA I+ +QD + N ++ V +TRK L+L Y + + + Sbjct: 54 QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I + +G IG + I + TTP + L + + + Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV + +E SSH L+ R+ G+ G FTNL RDH+D+H+T + Y+N+K +LF+ Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 + II DD Y K+V+K + + + + + K + ++ V Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355 K+ +F+ +PGE+ +YNAL A G C + I + + K+ V PGR E TN Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVIV-PGRCERTATNYNLP 342 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I +DYAHT + L+ IL+ R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIV Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPRSE+P +I +I+ GI + NR +AI+ A+++ + DV+V+AGKGHET Sbjct: 403 TSDNPRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + + +++++IL Sbjct: 463 ILKD-KTIHFDEREVVKQIL 481 >gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parasuis SH0165] gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis SH0165] Length = 496 Score = 339 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 159/482 (32%), Positives = 232/482 (48%), Gaps = 18/482 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84 +++N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ + +Q Sbjct: 18 KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 S +L V N K LS A YG E + + +TGT+GK++ A Q G Sbjct: 78 FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGG 137 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S + + L+ G ++E SSHGL Q+R + Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH T + Y AK RLF EL K+ ADD ++ + + Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGRKWLAKLP 255 Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 Q ++I K V + + + L G F V N L A Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375 +A+G D ++E L+ V GR E + + + VDYAHT ++LE L Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + VFGCGGDRD GKRP+M +IA LAD IVTDDNPR+EDP+ I +++ G Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFNDVMKG 435 Query: 436 IPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + R AI AI +DV+++AGKGHE I+ +K D + R+ Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494 Query: 493 LG 494 LG Sbjct: 495 LG 496 >gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] Length = 496 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 232/482 (48%), Gaps = 18/482 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84 +++N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ + +Q Sbjct: 18 KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 S +L V N K LS A YG E + + +TGT+GK++ A Q G Sbjct: 78 FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFSQWRNLLGG 137 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S + + L+ G ++E SSHGL Q+R + Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH T + Y AK RLF EL K+ ADD ++ + + Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGRKWLAKLP 255 Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 Q ++I K V + + + L G F V N L A Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375 +A+G D ++E L+ V GR E + + + VDYAHT ++LE L Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + VFGCGGDRD GKRP+M +IA LAD I+TDDNPR+EDP+ I +++ G Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRTEDPDVIFNDVMKG 435 Query: 436 IPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + R AI AI +DV+++AGKGHE I+ +K D + R+ Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494 Query: 493 LG 494 LG Sbjct: 495 LG 496 >gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 497 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 156/505 (30%), Positives = 249/505 (49%), Gaps = 26/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E++ I +E I ++++S+ ++ + F AI G DGH FI Sbjct: 1 MKL-------LKEILTDEKII-YGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AI GA I + ++ N +++ DN RK L+L ++R Y E ++ Sbjct: 53 DEAIKNGASVIFIEDEKYVESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 A+TGT+GK++ ++ + Q + +G IG + + TTP P+ K L + Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V E SSH DQ+R+ K G FTNL +DH+DYHQT + YF AK R+FE++ Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQI 229 Query: 238 LPKESPAIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 AI + + ++++ G + + + + Sbjct: 230 DEFNKEAIYSINVDDEYGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + L G F +YN A I G D + E L + GRFE Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEV--I 347 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 +G + +DYAHT ++LE ILK++ I RII VFG GG+RD+ KRP+MG+ A L+D Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSD 407 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I I+T DNPR+EDP I +I+ GI I +R +AI AI + ++D++++AGKG Sbjct: 408 IVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HE I+ + + D ++++EI+ Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491 >gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 484 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 161/501 (32%), Positives = 248/501 (49%), Gaps = 29/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L D++ ++ + I + DSR+ + G +FVAI G K DG +I Sbjct: 1 MRLADVLKDIEYTIVKG-------NVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A++V +I + ++ V NTRK L+ AS YG + + + Sbjct: 54 GDAIERGAVAVLVD-------GEISIDKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV ++ I + IG + I TTP + L + L + Sbjct: 107 GVTGTNGKTSVTYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV +V +E SSH L +R+D FTNL +DH+D+H+T Y NAK +LF Sbjct: 167 VDEGVKYVVMEVSSHSLALNRVDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFRM- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D ++ NA + + K + + T+ +E Sbjct: 226 ---AKTACVINIDDDYSSLIIENSNAKVVTYGIKDYAYIM-AKDIKNDIKGAKYTVQIED 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D +PG F VYN+L A + +GI V L+ + + GRFE + Sbjct: 282 IKSDIALKIPGLFSVYNSLAAISVAFILGIPLQSVKIALKDVKI-KGRFEIL-DIDAPYN 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + LE ++K +GR I++FGCGGDRD+GKRP MG++A AD I+T Sbjct: 340 VVIDYAHTPDGLENLMKAFGEYDTGRKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITS 399 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP +I +EI GI + NR EAI+ A+ + D++++AGKGHET Sbjct: 400 DNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKGHETYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 ++ + + +I++EIL Sbjct: 460 VLKDRVID-FDEREIVKEILN 479 >gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] Length = 493 Score = 339 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 156/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 K+ E+ DSR + G +FVA+ G++ DG +I QAI +GA A++ + + Q Sbjct: 17 IKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWH 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ + LS A Y + + + VTGT+GK++++ + Q + G +S Sbjct: 77 QDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSA 136 Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G ++ TT S + + +L+ QG V++E SSHGL QHR++ + Sbjct: 137 VMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---AH 261 FTNL RDH+DYH T + Y AK RLF EL PK ADD E + A Sbjct: 197 DVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQIIN--ADDPVGVEWLAELGSAV 254 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 CR Q K++ K+ + + + + L GEF V N L+ Sbjct: 255 AVSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFAT 314 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++ D +L L V GR E + +++ VDYAHT ++LE L+ R Sbjct: 315 LLSLDYDFDELLRTASSLTGVCGRMEMLTQSNQPT-AIVDYAHTPDALEKALQAARLHCQ 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 G++ VFGCGGDRD GKRP+M IA LAD IVTDDNPR+E EKI +I+ G Sbjct: 374 GQLWCVFGCGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDILLGFEDQSA 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R +AI AIE + +D +++AGKGHE I+ +K D +++++ + Sbjct: 434 VKILHDREQAIAFAIEQADPEDTILIAGKGHEDYQIIG-KQKHHFSDQEMVKKYFDV 489 >gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] Length = 483 Score = 339 bits (868), Expect = 9e-91, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 243/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ P I + E +I ++ DSR I G +FVA+ G + DGH FI Sbjct: 1 MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA+A++ D + V +T + A+ +G ++ Sbjct: 54 SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + + +V G Sbjct: 227 LPKDAFAITNADDKNGMVMVQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVDGHEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL + L V GR E + ++ G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIR-SAEGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++LE +L I + + GR+I V G GG+RD+GKRP+M A+ +D I+ Sbjct: 340 AIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA M K DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +++REI Sbjct: 460 DYQEIK-GVKHHFDDKEVVREIF 481 >gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] Length = 488 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 239/503 (47%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I + DSR ++ G +FV I G DGH + Sbjct: 1 MKLTKLLTYLKN------APSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA +GA AIV + P++++ +T++ L++ + YG+ + ++ Sbjct: 55 RQAAEKGAAAIVAEREVDA---------DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+S + V++I +++G + IG T + + TTP + L K + Sbjct: 106 GITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 QGV +E SSH L R+ G +FTNL +DH+DYH+T + Y +AK LF Sbjct: 166 VDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQL 225 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD S + + + Sbjct: 226 GGSFNHETPKWAVLNADDPASAYFAQVTSAHLLTYGIQNDADVM--AENIKMAPKGTTFD 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + PL G F VYN L AA + IA I A + E +E L V GRFE V Sbjct: 284 LVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAG 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT +SLE +L R +T G++ VV GCGGDRD+ KRP M KIA+DLAD Sbjct: 344 Q-DFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLADE 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + T DNPRSE+P I ++ G+ G + NR +AI AI K DV+++AGKGHE Sbjct: 403 PVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G+ D ++ + + Sbjct: 463 TYQQIG-GQTFDFDDAEVAKRAI 484 >gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580] Length = 488 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 162/505 (32%), Positives = 240/505 (47%), Gaps = 33/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL L+ L P + I + DSR ++ G +FV I G DGH Sbjct: 1 MKLTKLL--------TYLKNVPSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 + QA +GA AIV + P++++ +T++ L++ + YG+ + Sbjct: 53 YARQAAEKGAAAIVAEREVDA---------DVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 ++ +TGT+GK+S + V++I +++G + IG T + + TTP + L K Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + QGV +E SSH L R+ G +FTNL +DH+DYH+T + Y +AK LF Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223 Query: 236 -----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 A++ ADD S + + + Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYFAQVTSAHLLTYGIQNDADVM--AENIKMAPKGTT 281 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + PL G F VYN L AA + IA I A + E +E L V GRFE V Sbjct: 282 FDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVD 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT +SLE +L R +T G++ VV GCGGDRD+ KRP M KIA+DLA Sbjct: 342 AGQ-DFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLA 400 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D + T DNPRSE+P I ++ G+ G + NR +AI AI K DV+++AGKG Sbjct: 401 DEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET + G+ D ++ + + Sbjct: 461 HETYQQIG-GQTFDFDDAEVAKRAI 484 >gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 163/500 (32%), Positives = 258/500 (51%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DLI + ++ ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 1 MKLKDLIENI------DVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA +VV + I + NTRK L++ ++ +G ++ + Sbjct: 55 DEAIQNGACLVVVEEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S ++ I + + IG + I S + + TTP L K + Sbjct: 111 GVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 171 KNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMS 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A + + V + + + NK Q + G Sbjct: 231 KKRVVNA-------DDRWGKRIIEMYPDSVTYAKDSDAQVCARNIKLFVNKNQFELWYNG 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V ++ Sbjct: 284 EKEEITLNIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIV-ESNEKFT 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT Sbjct: 343 IVIDYAHTPDGLLNLMKTVDEVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 403 DNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + + I+++IL Sbjct: 463 ILKD-RTIPFDERRIVKDIL 481 >gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] Length = 483 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 158/503 (31%), Positives = 242/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ P I + E +I ++ DSR I G +FVA+ G + DGH FI Sbjct: 1 MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA+A++ D + V +T + A+ +G ++ Sbjct: 54 SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K++ AI ADD +++ + + + +V G Sbjct: 227 LSKDAFAITNADDKNGMVMVQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVDGHEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL + L V GR E + ++ G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIR-SAEGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++LE +L I + + GR+I V G GG+RD+GKRP+M A+ +D I+ Sbjct: 340 AIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA M K DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +++REI Sbjct: 460 DYQEIK-GVKHHFDDKEVVREIF 481 >gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] Length = 483 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 264/490 (53%), Gaps = 17/490 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + ++ L ++ +++I ++ DSR ++ G +F+ I G DGH + +A GA+ Sbjct: 2 NLNLILKSLGYSFIKEDKKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV + + I+ V ++RK L++ AS YG + I+ +TGT+GK+ Sbjct: 62 VIVCEKDLE----ELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ I +++G +G + I + ++ TTP + L K + + V + Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ +I Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD+Y ++V+K+A G ++ + + + + + + + + Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E L + VPGR E V N G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + + Sbjct: 412 TLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470 Query: 484 VDCDIIREIL 493 + ++I E++ Sbjct: 471 DEREVIEELI 480 >gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] Length = 487 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 145/500 (29%), Positives = 254/500 (50%), Gaps = 25/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ ++IN + + I+++ DSR I+ +F+AI G DGH +I Sbjct: 1 MKLNKILNGIEHKIINGKN-------DLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 +A+ +GA A++V S + V+NTRK +++ A + +++ Sbjct: 54 KEAVEKGATAVIVEKKLKK------YLSGITYIEVENTRKEMAVLAKNFFANPLADIDLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A + I +++ + G + I+ TTP + L + S Sbjct: 108 GITGTNGKTTTAYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQA 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV ++ +E SSH LD +R+ + FTNL +H+DYH+ +Y AK +LF + Sbjct: 168 KTAGVQYIVMEVSSHALDLYRVHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQ- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ A+I DD S +++++ + ++ + + Sbjct: 227 LSPDASAVINLDDKNSGFMLEKSKAHNFKYSLSNQNADLYCQNYKLKQNSLNYQSQGLIK 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++F F +YN+L A +GI + ++ LE++ VPGRFE + + + Sbjct: 287 RNFQLKLGGI--FNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELI-NAGQDFQ 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + +E +L+ + IT R+IV+FGCGGDRD+ KRP+M K+A D AD +T+ Sbjct: 344 LIVDYAHTPDGMENVLEAAKEITKNRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLTN 403 Query: 418 DNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDPE I +EI G + +R +AI AI K D++++ G+GHE Sbjct: 404 DNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAINFAKKDDIILILGRGHEKYQ 463 Query: 474 IVTNGEKKMSVDCDIIREIL 493 ++ + + ++ D + + L Sbjct: 464 VIKDKKIEL-DDRKVAYQAL 482 >gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens FZB42] gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42] Length = 490 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 234/503 (46%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ E + + + I + DSR ++ G +FV I G DGH F Sbjct: 1 MKLTKLLTYLMAEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA AIV + + P+++V +++ LS+ + YG+ + + + Sbjct: 55 QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+S V +I +++G + IG I + TTP + L K + Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 + + V +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K A++ ADD S K K++ Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFEKVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G F VYN L AA IA G+ + LE+L V GRFE V N Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHN 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ +AD Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AGKGHE Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + N E D ++ + Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484 >gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] Length = 485 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 162/506 (32%), Positives = 246/506 (48%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ I + +I V+ DSR I+ G +F+A+ G + DGH FI Sbjct: 1 MKLSELLKNVKV-------IASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA AI+ L+D + + V +T + A+ YG+ ++ Sbjct: 54 SKAIELGAVAIL------LEDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ + G + + I+ TTP PI L L+ + Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + AI ADD +++ + + +V G Sbjct: 227 LPKTAFAITNADDKNGMIMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + G+ +I V G GG RD+GKRP+M + A+ +D I Sbjct: 340 AVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G+ + +R EAIRTA M K DV++VAGKGH Sbjct: 400 LTSDNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + NG K D ++IREI G+ Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFGI 484 >gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] Length = 509 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 164/501 (32%), Positives = 249/501 (49%), Gaps = 17/501 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ K + Q E +I ++++S Q G +F+ + G + DG F Sbjct: 11 MKLRELLAKVSSISLTN----NYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFW 66 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 AIA GA +VS + + + + N ++ V + + A+ Y ++ Sbjct: 67 KSAIANGAVGAIVSVSAATKHPA----KNECVIPVADMSQTCPEIAAAFYDYPGQKMKMV 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ I + L + G F + TT P+ L L+ Sbjct: 123 GITGTNGKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQA 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH LDQ R+ G FTNL +DH+DYH+ YF AK RLF Sbjct: 183 LAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSD 242 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AI+ ADD Y ++++ R + S + + + + Sbjct: 243 -YLKGRAIVNADDPYGQKLIARLESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPK 301 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356 + F PL G++ + N L A G + +G+D ++V+ L VPGR E V T + Sbjct: 302 GEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDV 361 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +L+D+A+V+ Sbjct: 362 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELSDLAVVS 421 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPE+I +I+ GI + +R EAIRTAI D +++AGKGHE Sbjct: 422 SDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKGHEDYQ 481 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ EK D + R L Sbjct: 482 ILGT-EKIHFDDREQARNTLR 501 >gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] Length = 483 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + ++ L ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ Sbjct: 2 NLNLILKSLEYSFIKENKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV + + I+ V ++RK L++ +S YG + I+ +TGT+GK+ Sbjct: 62 VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ I +++G +G + I + ++ TTP + L K + + V + Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ +I Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD+Y ++V+K+A G ++ + + + + + + + + Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470 Query: 484 VDCDIIREILGLI 496 + ++I E++ I Sbjct: 471 DEREVIEELIKEI 483 >gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum F str. 230613] Length = 483 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 162/502 (32%), Positives = 266/502 (52%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ I + ++I ++ DSR ++ G +FV I G DGH + Sbjct: 1 MNLNLILKSLGYSFIKEYK--------KEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA+ IV + + I+ V ++RK L++ +S YG + I+ Sbjct: 53 KKAYDNGAKVIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKII 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I +++G +G + I + ++ TTP + L K + Sbjct: 109 GITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V + +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ Sbjct: 169 VDEKVDYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +I DD+Y ++V+K+A G ++ + + + + + + Sbjct: 229 QNS----VINIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKN 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + +PG++ +YNAL + G C+ GI + E LE + VPGR E V N G Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I Sbjct: 403 SDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQI 462 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + + + + ++I E++ I Sbjct: 463 LKD-KTIHFDEREVIEELIKEI 483 >gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] Length = 485 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++Y I + +I +++ DSR + G +FVA+ G + DGH +I Sbjct: 1 MLLSDILYNI-------SLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI GA A++ + + V+N+ K + + A YG + ++ Sbjct: 54 ETAIDAGASAVLCE------VLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SVA+ + ++ ++ G I + I TTP I L L + Sbjct: 108 GVTGTNGKTSVATLLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SSH + Q R+ G+ G FTN+ +DH+D+H+T Y AK F + Sbjct: 168 HQKGCAFVFMEVSSHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKK-GFFDA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ DD K +++ + + +E Sbjct: 227 LPSTAFALTNVDDRNGKVMLQNTKAEKHSYSLKNIADFKGKVLDCGLFG------LQMEI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F L G+F YN L G + + + +L L +L PGRFE V ++ + Sbjct: 281 DKQEVWFKLIGQFNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQ-TV 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L+ +L+ I + G R+I V GCGG+RD+GKRP+M IA +L+D I+ Sbjct: 340 GIVDYAHTPDALKNVLETINGLRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+PE I ++ GIP +R EAIR A+ + +D+++VAGKGHE Sbjct: 400 TSDNPRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T V G K D + ++ Sbjct: 460 TYQDVK-GVKSHFDDREELKLAF 481 >gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] Length = 498 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 159/501 (31%), Positives = 245/501 (48%), Gaps = 28/501 (5%) Query: 9 KDFPELINQL-SIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K EL ++ I+ + R+ +I +S+DSR I+ G++FV I G DG F QA+ + Sbjct: 2 KTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A++ + + + V + L Y + + + VTGT+ Sbjct: 62 GAVAVLTNKHLD-------LPLEITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + + I + +G IG I + TTP + L L+ + ++G+ Sbjct: 115 GKTTTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMD 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----EELL 238 +V +E SSH L +R+ GI+ FTNL +DH+D+H++ + Y AK +LF E + Sbjct: 175 YVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPV 234 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K A+I DD ++ E++K + + Sbjct: 235 KKNKTAVINIDDPHADEILKATSCKVLTYGVEKDADL--KGSNLQVGLKSSSFDVVGPFV 292 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F VYN L A G A G+D+ ++ + ++ + VPGRFE V + I Sbjct: 293 SVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELV-EAGQDFAI 351 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDY+HT +SLE L R + RII VFGCGGDRD+ KRPIMG IA ADI IVT D Sbjct: 352 VVDYSHTPDSLEKALTTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAAQYADIPIVTSD 411 Query: 419 NPRSEDPEKIRAEIIHGIPGFI-------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPRSEDPE I +E+ G+ + +R +AI AIE+ D++++AGKGHET Sbjct: 412 NPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVLIAGKGHET 471 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 I+ +G D ++ R+ Sbjct: 472 YQILKDGT-IHFDDREVARDA 491 >gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] Length = 488 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG F Sbjct: 1 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAVEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465 Query: 480 KKMSVDC 486 D Sbjct: 466 TLPFSDH 472 >gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] Length = 491 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 166/500 (33%), Positives = 250/500 (50%), Gaps = 27/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++ E I I + + I +++DSR ++ G IF A+ G K+DG +I Sbjct: 3 KLKEI-----VEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYIS 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AI++GA A+ + + P++ V LS +S Y + NI+ Sbjct: 58 DAISKGASAVFLEGEVNNIY-------GVPLVRVREILDVLSKVSSYFYDFPSKYLNIIG 110 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + + + G+ S IG I + + TTP P L + L + Sbjct: 111 VTGTNGKTTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRKMV 170 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V +++E SSH L R+DGI L FTNL +DH+D+H+T + YF AK+++F L Sbjct: 171 DREVKFLAMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLE 230 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +A E R RV V + ++LKK +N + I Sbjct: 231 D-----GGFAVINRDNEWTGRISLPNRRVFWVSLKNGDLYLKKHENTNNGMLLEIGTPLG 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D L G+F +YN L A G+ I +G + + L V GR E + + Sbjct: 286 DLIIDTKLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREGQ-NFDV 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + L +L+ ++ T GR+IVVFGCGGDRD KR MG+I+ LADI IVT D Sbjct: 345 IVDYAHTPDGLFNVLQTVKEFTKGRVIVVFGCGGDRDPTKRDKMGEISARLADIVIVTSD 404 Query: 419 NPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 NPR+EDP KI +I GI + NR EAI+ AIE+ + D +++AGKGHE Sbjct: 405 NPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKGHEDYQ 464 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ N K D ++ ++ + Sbjct: 465 IIGN-TKIPFSDQEVAKKYI 483 >gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] Length = 485 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 162/506 (32%), Positives = 246/506 (48%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ I + +I V+ DSR I+ G +F+A+ G + DGH FI Sbjct: 1 MKLSELLKNVKV-------IASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA AI+ L+D + + V +T + A+ YG+ ++ Sbjct: 54 SKAIELGAVAIL------LEDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ + G + + I+ TTP PI L L+ + Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + AI ADD +++ + + +V G Sbjct: 227 LPKTAFAITNADDKNGMIMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + G+ +I V G GG RD+GKRP+M + A+ +D I Sbjct: 340 AVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G+ + +R EAIRTA M K DV++VAGKGH Sbjct: 400 LTSDNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + NG K D ++IREI G+ Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFGI 484 >gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] Length = 507 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 171/516 (33%), Positives = 253/516 (49%), Gaps = 38/516 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ E ++ + V+ DSR ++ G +FVA+ G KEDG ++ Sbjct: 1 MKLTDVLAGCGAEQVSG------GRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+++GA A+V S P V ++RK L+L A+ YG+ + + L Sbjct: 55 GEAVSRGAVAVVSEKPVG--------SSQVPFFKVSSSRKALALIAANFYGRPAQQLTLL 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I + S+ IG + + TTP P+ L + + Sbjct: 107 GVTGTNGKTTTTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V +E SSH L Q R+ G+ A +FTNL RDH+DYH+ + YF AK RLF E Sbjct: 167 VDAGVETVVMEVSSHALVQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGEN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296 L A++ DD Y+ + QG I V + T+ Sbjct: 227 LSATGVAVVNGDDTYASRIYNELRGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTP 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D L G + N L A G+ + GI V +E++ +PGR E V G Sbjct: 287 AGDIPVKSRLVGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGP 346 Query: 357 RI--YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ L+ RT+ GR+IVVFGCGGDRD+GKRP+MG A + AD+ + Sbjct: 347 APAVLVDYAHTDDALKRALEASRTLAKGRVIVVFGCGGDRDKGKRPLMGTAAAEGADLVV 406 Query: 415 VTDDNPRSEDPEKIRAEI-----------------IHGIPGFIEKGNRIEAIRTAIEMLN 457 VT DNPR+EDP +I ++ G G++ +R AI TA+ + Sbjct: 407 VTSDNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLAR 466 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + DV++VAGKGHET IV EK+ D + + L Sbjct: 467 EDDVVLVAGKGHETYQIVGT-EKRPFDDREAATKAL 501 >gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 483 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 211/500 (42%), Positives = 285/500 (57%), Gaps = 29/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL+ +D + I V++DSR + +G +FVA+ G DG FIP Sbjct: 5 RLSDLLRRDVA-------------ADPVITGVTADSRKVTSGSLFVALPGTAADGRAFIP 51 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA++QGA A++ +RS + R+ +L A YG P +AVT Sbjct: 52 QALSQGAAAVLAPQDTPDGAAPLLVRSG-------DVRRAYALAARGFYGAQPATCVAVT 104 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA------QDNRLTTPSPIYLAKALS 175 GT+GK+SVA+F +QI G+ + +G ++ LT+P A+ L+ Sbjct: 105 GTNGKTSVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARLLA 164 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 L+ GVTH+++EASSHG+DQ RLDG+ L A +FTNL +DH+DYH AY AK+RLFE Sbjct: 165 TLAEGGVTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFE 224 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LLP+ A++ AD + +G V+ VG +G+ + L + A+ Q++ + V Sbjct: 225 SLLPRGRTAVLNADSDAYNAFAAASIMSGLGVMGVGERGRDLSLIERRAVPEGQRLILDV 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G D L PL G FQ NALVAAGLCIA G D+A VL LEK+ GR + V Sbjct: 285 RGDRHDVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGRLQRVSGGRG- 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 YVDYAHT + LE +LK +R +GR+IVVFG GGDRD+GKRP+MG IA LAD+AIV Sbjct: 344 -EAYVDYAHTPDGLETVLKALRPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADVAIV 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA++ G P E G+R AIR A+ M+ DV+VVAGKGHE IV Sbjct: 403 TDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKGHEQGQIV 462 Query: 476 TNGEKKMSVDCDIIREILGL 495 G D + E L + Sbjct: 463 G-GTTHPFDDATELAEALRV 481 >gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum H04402 065] Length = 483 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 162/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + ++ L M+ +++I ++ DSR ++ G +FV I G DGH + +A GA+ Sbjct: 2 NLNLILKSLEYSFMKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV + + I+ V ++RK L++ +S YG + I+ +TGT+GK+ Sbjct: 62 VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ I +++G +G + I + ++ TTP I L K + + V + Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ +I Sbjct: 178 MEVSSHSLYLDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD+Y ++V+K+A G ++ + + + + + + + + Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470 Query: 484 VDCDIIREILGLI 496 + ++I E++ I Sbjct: 471 DEREVIEELIKEI 483 >gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] Length = 490 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 234/503 (46%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ E + + + I + DSR ++ G +FV I G DGH F Sbjct: 1 MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA AIV + + P+++V +++ LS+ + YG+ + + + Sbjct: 55 QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+S V +I +++G + IG I + TTP + L K + Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 + + V +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF Sbjct: 166 NDEHVETAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K A++ ADD S + K++ Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFERVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G F VYN L AA IA G+ + LE+L V GRFE V N Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHN 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ +AD Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AGKGHE Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + N E D ++ + Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484 >gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] Length = 486 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 203/500 (40%), Positives = 277/500 (55%), Gaps = 28/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL + F + I V++DSR + AGW+F A+ G K DG F Sbjct: 4 RLSDLFNRPFAN-------------DSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAE 50 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+A+GA AI+ P++ ++ R+ +L ++ +GK P +AVT Sbjct: 51 GAVAKGAAAILAPEGG-------LEGLGVPVVRSEDARRAYALASAAFWGKQPAMCVAVT 103 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKAL 174 GT+GK+SVA F +QI + G + +G LTTP +A+ + Sbjct: 104 GTNGKTSVAGFCRQIFAQLGHKAASMGTLGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMI 163 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L+ GVTH+++EASSHG+DQ R+DG+KL A +FTN +DH+DYH + +AY AK+RLF Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRVDGVKLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L P + A++ AD A +G V SVG G+ + L Q + + Sbjct: 224 DTLTPAGATAVLNADSEAFPTFASTAVTSGQSVFSVGEDGQGLRLISRTPTPAGQDLVVE 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G+ +D PL G FQ N LVAAGLC+A G D VL+ LE L GR + VG Sbjct: 284 AQGRTYDIRLPLAGAFQASNVLVAAGLCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPH 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 GG YVDYAHT + L+ +L+ +R T G++I VFG GGDRD+GKRP+MG I LADIAI Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTRGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 VTDDNPRSEDP IRA I+ PG E G+R AIR A+++L + DVLVVAGKGHE I Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVDLLAEGDVLVVAGKGHEQGQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V G D L Sbjct: 464 VA-GVVHPFDDVAETLAALE 482 >gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 210/495 (42%), Positives = 297/495 (60%), Gaps = 24/495 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL + E +I ++SDSR +Q GW+F A+ G+ DG F+ Sbjct: 1 MKLSDLFP-------------LAENGETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFV 47 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+AQGA AI+ + P ++ D R+ L+L A R YG+ PE ++AV Sbjct: 48 PQAVAQGAAAILSDGGIGA--------VSVPHVMADEPRRALALAAKRFYGEQPEFVVAV 99 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179 TGT+GKSS F +QI R+G+ + +G I + D TTP P+ +++ + L+ Sbjct: 100 TGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALAR 159 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QGVTH ++EASSHGL+QHRLDG+ L A +F NL +DH+DYH T +AY +AK+RLF +L P Sbjct: 160 QGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAP 219 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298 + PAI+ AD + + V + A AG +V+S G++G+ + + ++ Q + + + + Sbjct: 220 RGIPAIVNADSDHREAVEETARKAGLQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVE 279 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GEFQ NAL AA LC+++G++ V + L L V GR EFVG G + Sbjct: 280 QKPIELPLIGEFQTLNALAAAALCLSLGMEFPAVADGLANLKPVKGRLEFVGKTETGAAV 339 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +VDYAHT + L+++L+ +R T+GR+ V+FGCGGDRD KRPIMG+IA AD IVTDD Sbjct: 340 FVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGGDRDAKKRPIMGEIASRQADDVIVTDD 399 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPRSEDP KIRA ++ G G E G+R EAI + L K D LV+AGKGHET I+ + Sbjct: 400 NPRSEDPAKIRASVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKGHETGQIIGS- 458 Query: 479 EKKMSVDCDIIREIL 493 + D D L Sbjct: 459 QVLPFSDQDEALAAL 473 >gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens TA208] gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens LL3] Length = 490 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 234/503 (46%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ E + + + I + DSR ++ G +FV I G DGH F Sbjct: 1 MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA AIV + + P+++V +++ LS+ + YG+ + + + Sbjct: 55 QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+S V +I +++G + IG I + TTP + L K + Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 + + V +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K A++ ADD S + K++ Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFERVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G F VYN L AA IA G+ + LE+L V GRFE V N Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHN 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ +AD Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AGKGHE Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + N E D ++ + Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484 >gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] Length = 485 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 162/503 (32%), Positives = 241/503 (47%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ L M +I E+ D+R + +F+ I G DGH F Sbjct: 1 MKLHTLLEA--------LPFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A +GA AI+ + + P+++V NT++ ++L A R YG+ + Sbjct: 53 VDAAKRGAAAILAEKPVDV---------DIPVIIVRNTKRAMALLADRFYGQPSRKFRLV 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + +++I + +G ++ IG I + + TTP + L K + Sbjct: 104 GITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEM 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 +++GVT +E SSH L + R+ G FTNL +DH+DYH+T Y AK Sbjct: 164 NARGVTDCVMEVSSHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQL 223 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K AI+ ADDA SKE + + + T Sbjct: 224 GNSCPQDKPKYAILNADDAASKEFEQVTAVPVITYGIDHDADFM--AENIDMHARGTTFT 281 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ V++ E + V GRFE V Sbjct: 282 LVTPFEKREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDSVIKTAEAMEGVRGRFELV-NG 340 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK IR +I VV GCGGDRD+ KRP+M +IA A Sbjct: 341 GQDFSVIVDYAHTPDSLENVLKTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAHY 400 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSEDP I E+ G+ G + +R EAI+TAI DV+++AGKGHE Sbjct: 401 PIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ N E D ++ E++ Sbjct: 461 TYQIIGN-EVHHFDDREVALEMI 482 >gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1; AltName: Full=Meso-A2pm-adding enzyme 1; AltName: Full=Meso-diaminopimelate-adding enzyme 1; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium acetobutylicum ATCC 824] gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum EA 2018] Length = 482 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 167/499 (33%), Positives = 254/499 (50%), Gaps = 27/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ +I ELI +I+ ++ DSR + +F I G DGH FI Sbjct: 1 MKLKKIIGDVKYELI-------CGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+ +GA+ IV + N ++ V++ RK +++ + Y + + Sbjct: 54 DKAVEKGADVIVCTK-------VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ + + SG IG + I ++ TTP + L K S + Sbjct: 107 GITGTNGKTTSTYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + +E SSH L R+ GI G FTNL +DH+D+H+T + Y+ AKM LF+ Sbjct: 167 VHDKIDYCVMEVSSHSLYLDRVYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKN- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +II DD Y + V K A N + + + + G Sbjct: 226 ---SKRSIINIDDKYGERVFKDAGNDKITYGLTEKADL--KAENLKMTSRGTEFDLCYRG 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 +PG++ VYNAL + C+ GI V + L KL VPGR E V N+ Sbjct: 281 LREHVKINIPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDF 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT + LE +LK R T GR+I VFGCGGDRD+ KRPIMG+I L+DIA++T Sbjct: 341 DVVLDYAHTPDGLEKVLKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVIT 400 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE+PE+I +I+ GI ++ NR EAI+ A+ M K DV+V+AGKGHE I Sbjct: 401 SDNPRSENPEEIIKDIVQGIKTDNYVIVENRKEAIKKAMLMAKKDDVIVLAGKGHENYQI 460 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + + +I+ E + Sbjct: 461 LGD-KTIHFDEKEIVSEFI 478 >gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter fumaroxidans MPOB] gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobacter fumaroxidans MPOB] Length = 504 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 170/511 (33%), Positives = 259/511 (50%), Gaps = 36/511 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L+ E++ + + ++ DSR IQAG +FVA+ G + DG+ FIP+ Sbjct: 5 LNNLLRDV--EILQTAGPL-----DVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPE 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+ GA A++ + + + ++ V ++RK ++ A+ YG ++ V Sbjct: 58 AVRSGASAVITETVGFSECPA-------TVVRVSDSRKAMARMAANYYGHPCAGLKMIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ ++ I +R G S +G + ++ +TTP + L + Sbjct: 111 TGTNGKTTTTLLLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMRE 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTHV +E SSH L Q R+ A FTNL +DH+DYH T + YF AK LF E L Sbjct: 171 DGVTHVVMEVSSHALAQGRVAECAFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLR 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I DD Y ++++A G S G + H+K + + + Sbjct: 231 TGSVAVINGDDPYGARLVEKAGP-GAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGS 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D PL G +YN L A +A+G+ A + E + L V GR + V + G + Sbjct: 290 MDIHSPLIGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVV 349 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT +++E L +R +T+GR++VVFGCGGDRD+GKRP+MGK+A L D+ IVT DN Sbjct: 350 VDYAHTPDAMEKSLGCLREMTAGRLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDN 409 Query: 420 PRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVL 462 PRSE PE+I EI G+ G+I + +R AI A+ D + Sbjct: 410 PRSEVPERIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTV 469 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + GKGHET +V GE D ++ + L Sbjct: 470 FIGGKGHETYQLVG-GEVLPFDDRLVVAQYL 499 >gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] Length = 484 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 169/501 (33%), Positives = 251/501 (50%), Gaps = 28/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ +N I + DSR + G +FVAI G K DGH FI Sbjct: 1 MELIKLLNDIEYYTVNGDVHL-------DIKNICYDSRKVTPGSLFVAIEGFKTDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAI GA A+VV+ L D ++ V+++R L+ + Y + +++ Sbjct: 54 RQAIDNGAVAVVVTRDVPLPD-------GVSVVKVEDSRLSLAALSRAFYDYPDKQLHLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV V+ I ++SG IG + I TTP L + Sbjct: 107 GVTGTNGKTSVTYMVKSILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+ V +E SSH L +R+ G + G FTNL DH+D+H YF AK++ Sbjct: 167 ADGGIQDVVMEVSSHSLALNRVAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLK----- 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + S I D +K + + + + + I + G Sbjct: 222 LFQNSGLIATNVDDSYGVKLKDMFVSKTVYTYGIEREAHVTASNILSDAKGSTFDIDICG 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + +PG F VYNAL AA C A+G+ + + + L+ L VPGRFE +GT++ Sbjct: 282 DRRPVIINIPGRFSVYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDT-DFT 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT + LE ILK+++ I GR+I +FGCGGDRD KRPIMG+I AD I+T Sbjct: 341 VIIDYAHTPDGLENILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTS 400 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDP I +I GI +I NR +AI+ ++ K D+L++AGKGHET Sbjct: 401 DNPRSEDPMAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKGHETYQ 460 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ + + + +++RE+L Sbjct: 461 ILKD-KTIHFDEREVVRELLE 480 >gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] Length = 500 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 230/483 (47%), Gaps = 22/483 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-------S 83 N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ + +Q Sbjct: 21 NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFAK 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 +L V N K LS A YG E + + +TGT+GK++ A Q G Sbjct: 81 NHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLG 140 Query: 142 LSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 141 GKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYRAE 200 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + FTNL RDH+DYH T + Y AK RLF EL K+ ADD +E + + Sbjct: 201 ALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGREWLAKL 258 Query: 261 HN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 Q +++ K V + + + + L G F V N L Sbjct: 259 PEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGELKSRLIGAFNVSNLLT 318 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILK 374 A +A+G D ++E L+ V GR E + + + VDYAHT ++LE L Sbjct: 319 AFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALD 378 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G + VFGCGGDRD GKRP+M +IA LAD IVTDDNPR+EDP+ I +I+ Sbjct: 379 AARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADKVIVTDDNPRTEDPDVIFNDIMK 438 Query: 435 GIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + R AI AI +DV+++AGKGHE I+ +K D + ++ Sbjct: 439 GFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWAKK 497 Query: 492 ILG 494 LG Sbjct: 498 FLG 500 >gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 1005 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 22/506 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 LQ++ ++ + I+ L + I+ V+SDSR + G +FVAI G DG FI Sbjct: 9 NLQEVQLEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIR 68 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 A+ +GA A++ S + V + RK L+ A YGK + I+ Sbjct: 69 SAVERGAAAVICEEFPSDPALP------CLYIKVADARKALAEAARIFYGKASDQLLIIG 122 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A + + +G+S+ IG TTP L + Sbjct: 123 VTGTNGKTTTAKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQML 182 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G +E SSH L R+ GI+ A FTNL ++H+D+H+T Y AK +LF++ L Sbjct: 183 EAGCKAAVMEVSSHALVLQRVYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQ-L 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQQV 291 + A++ DD Y++++ R + ++ + + + Sbjct: 242 SPDGFAVLNIDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTI 301 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + + LPG F V N L AA + + + + + L + V GR E VG Sbjct: 302 VLHFPDESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGE 361 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + +G +VDYAHT ++L L + + R+IVVFGCGG+RD+ KR MG+IA ++ Sbjct: 362 SRQGWMAFVDYAHTPDALFKALDALHGLKEDASRLIVVFGCGGNRDKEKRSEMGRIASEI 421 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD I+T DNPR EDPE+I I GI G +R EAIR A+ ML D+L+VAGK Sbjct: 422 ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGK 481 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHE + G K D II+ + Sbjct: 482 GHEKYQEIA-GHKYFFSDQAIIKTAM 506 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 81/450 (18%), Positives = 151/450 (33%), Gaps = 27/450 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +F+A+ G DGH FI +GA +VS + + S Sbjct: 563 VVIDSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGF 622 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V D+T L A+ + +LA+ G++GK++ V + G + Sbjct: 623 IVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLGTGFRVHMSEGNRNN 682 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +A ++ G + S TN+ Sbjct: 683 HLGVPLTLLQLRGD-TDIAVVEMGINHPGEMVLLAAIGS------------PTHALLTNI 729 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G +H+++ A++ LF+ L A + DD + ++ Sbjct: 730 GHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMATRS 789 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + G+ V NA+ AA + G+ + Sbjct: 790 EHSCWARDISVNSAGALSFLLCSIAGSEPVTLNFTGKHNVMNAIAAATVGHYFGLSLCQI 849 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGC 390 E LE+L PG ++ G RI D Y S+S+ + + + +G+ + V G Sbjct: 850 REGLERLTPAPGWKRLEVLDACGVRILNDTYNANSDSMRKAIDALCDLPGAGKRVAVLGD 909 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 G + + +G + + T E + G E E Sbjct: 910 MLELGLAGEVEHQAIGNYLQQSSVDLLFT----FGESARLFGRAVPERYRGHFES---RE 962 Query: 448 AIRTAIEM-LNKQDVLVVAG-KGHETVHIV 475 A+ A+ L + D+++ G +G + +V Sbjct: 963 ALLEALRTVLQEGDIVLFKGSRGMKLEQVV 992 >gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] Length = 496 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 158/479 (32%), Positives = 230/479 (48%), Gaps = 18/479 (3%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SATIR 87 N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA+ ++ + +Q Sbjct: 21 NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFAN 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 S +L V N K LS A YG E + + +TGT+GK++ A Q G S Sbjct: 81 STACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKSA 140 Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G Q+ TT S + + + L+ G ++E SSHGL Q+R + + Sbjct: 141 VMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYRAEALDF 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262 FTNL RDH+DYH T + Y AK RLF EL K+ ADD +E + + Sbjct: 201 DLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGREWLAKLPEAV 258 Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 Q +++ K V + + + L G F V N L A Sbjct: 259 AVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTAFAG 318 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT 378 +A+ D ++E L+ V GR E + + + VDYAHT ++LE L R Sbjct: 319 LLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALDAARL 378 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G + VFGCGGDRD GKRP+M +IA LAD IVTDDNPR+EDP+ I +I+ G Sbjct: 379 HCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFNDIMKGFRK 438 Query: 439 FIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + R AI AI +DV+++AGKGHE I+ +K D + ++ LG Sbjct: 439 PKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWAKKSLG 496 >gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] Length = 483 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 252/499 (50%), Gaps = 27/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ EL+ E+++N + DSR + G +FV + G + DGH + Sbjct: 1 MKLLDLLKGVDYELLEGTV-------EKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 +AI GA+ ++ ++ +L+V+ RK L+ ++ YG ++ Sbjct: 54 NKAIEAGAKVVLCEKKIDIK------SEGVTVLLVNEGRKALATMSANYYGHPTKSLKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + +++G +G + I + TTP + L K + Sbjct: 108 GVTGTNGKTTTVYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +E SSH L R+ G + G FTNL RDH+D+H++ Y+NAK +LFE Sbjct: 168 VDANCEYCVMEVSSHSLQLDRVYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFERS 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD Y V+K + + K + + + + G Sbjct: 228 KASVINV----DDDYGYRVLKDVEKLENKEIKTYSINNNSDFKASDLMLKEGDIHFKING 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 ++F+ + P GE+ VYNAL A G +GI + + + L + V PGR E +G Sbjct: 284 EEFNSVLP--GEYNVYNALGAVGAMSILGISNESIRKGLLDVVV-PGRCERIGYKYDIPY 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +D+AHT + L+ IL+ ++ T R+I V+GCGGDRD+ KR +G+I +LAD+AI+T Sbjct: 341 DIIIDFAHTPDGLKNILETLKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLAIIT 400 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR EDP I EI+ GI ++ NR+EAI+ A+ M + DV+V+AGKGHE I Sbjct: 401 SDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKGHENYQI 460 Query: 475 VTNGEKKMSVDCDIIREIL 493 G + +++ EIL Sbjct: 461 TNEGV-IHFDEREVVDEIL 478 >gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia succiniciproducens MBEL55E] gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E] Length = 488 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 247/476 (51%), Gaps = 13/476 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 K+N ++ DSR ++ G +FVAI G+ DG FIPQAI+ GA A++ + + + + Sbjct: 17 IKLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQ 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ + + LS A + Y +++ + VTGT+GK++V+ + Q Q G Sbjct: 77 NQIPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136 Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S I + +L+ QG ++E SSHGL QHR++ + Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262 AG FTNL RDH+DYH + + Y +AK RLF EL ++ ADD + ++ + Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKIIN--ADDEIGVQWLRELPDAV 254 Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 C Q ++ + V +T + L G F V N ++ Sbjct: 255 AVSCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLAT 314 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++G +L+ + +L V GR E + + + VDYAHT ++LE L+ R + Sbjct: 315 LLSLGYSLDELLKTVSQLTGVCGRMEMLHAAHKPT-VIVDYAHTPDALEKALQAARAHCT 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 GR+ VFGCGGDRD+GKRP+M ++A AD IVTDDNPR+ED +I +I+ G Sbjct: 374 GRLWCVFGCGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIVAGFKRPES 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R +AIRTA++ + DV+++AGKGHE I+ + K D + +++ LG Sbjct: 434 VNIVYDREQAIRTAVQSAVENDVILIAGKGHEDYQIIGH-TKHHFSDQEAVKKYLG 488 >gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] Length = 483 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ E++N + +I V+ DSR I+AG +FVAI G DGH FI Sbjct: 1 MKLNELLKNV--EVLNTQGDV-----DVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AI GA A++ + V +T + A++ YG ++ Sbjct: 54 PKAIELGATAVLCEK------LPEEQDPKVTFVQVASTESCVGEVATQFYGDPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I A TTP PI L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y +AK F + Sbjct: 168 VDAGCEYAFMECSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K++ AI ADD +++ + + + + G Sbjct: 227 LEKDAFAITNADDKNGMVMVQNCKANVKTYSTRTMADFKAKIIECHFEGMYLDINGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIH-SPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +L I + + G++I V G GG+RD+GKRPIM + A+ +D I+ Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D ++++EI Sbjct: 460 DYQEIK-GVKHHFDDKEVVKEIFN 482 >gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] Length = 483 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 160/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + ++ L ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ Sbjct: 2 NLNLILKSLEYSFIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV + + I+ V ++RK L++ +S YG + I+ +TGT+GK+ Sbjct: 62 VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ I +++G +G + I + ++ TTP + L K + + V + Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ +I Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD+Y ++V+K+A G ++ + + + + + + + + Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470 Query: 484 VDCDIIREILGLI 496 + ++I E++ I Sbjct: 471 DEREVIEELIKEI 483 >gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] Length = 490 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ F EL P + E +I ++SDSR +Q G++F A+ G K DG F Sbjct: 3 MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDMAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467 Query: 480 KKMSVDC 486 D Sbjct: 468 TLPFSDH 474 >gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] Length = 501 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 163/503 (32%), Positives = 243/503 (48%), Gaps = 15/503 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + N + + + +I + ++S Q G +F+ + G + DG F Sbjct: 1 MKLHDLLRA----IPNVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILA 119 AIA GA A ++S + + P ++ A+ + +P L Sbjct: 57 QSAIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQ 116 Query: 120 VTGTSGKSSVA---SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175 + G +G + ++ I ++ + G + F+Q TTP P+ L + L Sbjct: 117 LVGVTGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLH 176 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G +E SSH L Q R+ G + FTNL +DH+D+H+ + YF AK LF Sbjct: 177 SAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFN 236 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 AII ADD Y K ++++ SV ++ + + T+ Sbjct: 237 SD-YLHGKAIINADDPYGKRLIEKVGRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTLHT 295 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSR 354 D F PL G++ + N L A G + +G+D V+ L + VPGR E V + Sbjct: 296 PVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKPDQ 355 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKI +LAD+A+ Sbjct: 356 DISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKRPKMGKIGAELADVAV 415 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+EDPE+I +I+ GIP +E +R AIRTAI D +++AGKGHE Sbjct: 416 VTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGVLIAGKGHED 475 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ EK D + RE L Sbjct: 476 YQILGT-EKIHFDDREQAREALE 497 >gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] Length = 494 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 157/504 (31%), Positives = 250/504 (49%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L ++ ++ ++++DSR ++AG +F+A+ G DGH ++ +A+ G Sbjct: 2 KQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS + + ++ V++TRK + + ++ VTGT+G Sbjct: 62 AVAVLVSKPVEVSG-------DVCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + + TTP + L L + +GVTH Sbjct: 115 KTTTTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AII DD Y V+++ G ++ V + T+S +G D Sbjct: 235 SGKGAIINIDDEYGHRVIEKTTAPIITYSIDG--KGTLNAHDVEMTPKSSRYTVSYDGND 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + ++ VPGRFE + + + Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELI-EEGQPFAVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA DI VT DN Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 412 PRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494 >gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] Length = 486 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 160/505 (31%), Positives = 251/505 (49%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ + + ++ I V DSR ++ G +FVAI G + +GH +I Sbjct: 1 MNLKTLLKNITIK-------TSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QAI GA AIV + +VV N+ L+L A+ YG E ++ Sbjct: 54 DQAIRSGANAIVCEQ------LPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + Q+ +++G + + + + TTP P+ L L + Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV + +E SSHG+DQHR +G++ G FTNL RDH+DYH+T AY + K R F+ Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A++ DD +++ + ++ + + + Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTHADYKAYIIESRFDG------LLLRI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L GEF YN L +GID L + + V GRF+ ++ G Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQ-YAVSATGVI 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+D I+ Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+E+PE I +E+ G+ +R +AI++ + K D++++AGKGHE Sbjct: 400 TSDNPRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 T + G + D +I+RE L L Sbjct: 460 TYQEIK-GVRHHFDDFEIVREYLEL 483 >gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 1313] Length = 485 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 157/501 (31%), Positives = 247/501 (49%), Gaps = 32/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+DL + L++ ++ + +I +++ DSR +AG +FV I G K DGH F Sbjct: 1 MKLKDL--------VKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 IPQAI G A +V + D + ++ V +TR L+ A +G Sbjct: 53 IPQAIENGTRAFLVQKDVDVPD-------DATVVRVKDTRYALASVADIFFGHPSSKFNL 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + +TGT GK++ ++ I + G +G + + TTP L + S Sbjct: 106 VGITGTKGKTTTTYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSE 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + V V +E SSH L+ HR+ + G FTNL RDH+D+H+T + Y NAK++LF Sbjct: 166 MVQKNVNSVVMEVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKLFGM 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + + + + T+ Sbjct: 226 CKK------GLINIDNEFGPKVVDSARCEVYTMGIDNKADLRAVDIVHHPDSVDFTVVSP 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D +PG+F VYNAL A G C +G+ + + LEK+ V PGR E + + Sbjct: 280 WFTGDVRVNIPGKFSVYNALAAIGTCALMGVPFEYIKKGLEKVTV-PGRAEVL-DIKKDY 337 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH+ +SLE IL ++ GR++ VFGCGGDRD+ KRPIMG+I+ LAD I+T Sbjct: 338 TVMIDYAHSPDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLADFTIIT 397 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP+ I +I GI + +R EAI+ A+ +D++++AGKGHET Sbjct: 398 SDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKGHETY 457 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + + + +++R+IL Sbjct: 458 IILKD-KTIHFDEREVVRDIL 477 >gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 465 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 165/468 (35%), Positives = 260/468 (55%), Gaps = 23/468 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++DSR ++ G++F AI G + DGH F+ +A+ +GA A+VV Sbjct: 15 GITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQR--------- 65 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V+NTRK L+ A YG+ E ++ VTGT+GK++ ++ I ++SG + +G Sbjct: 66 VIKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAGLMGT 125 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + TTP PI + L + G THV E SSH LDQ+R+ G + A Sbjct: 126 IQYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYRVWGTEFEAVI 185 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH+ + YF AK RLF + K A++ DD Y K + + G R L Sbjct: 186 FTNLTQDHLDYHRDMEDYFRAKARLFFD--YKYRFAVVNTDDPYGKRLARDL---GDRAL 240 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G +G+ + ++ + ++ +S +GK F F L G+FQ YN A + +GID Sbjct: 241 TYGREGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVGID 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + E L+ +HV PGRFE + RG VDYAHT ++++ +L+ +R +T R+I VF Sbjct: 301 PNAIQEALKDVHV-PGRFEV-HRSDRGFIAVVDYAHTPDAMDNVLRTMRRLTKNRVICVF 358 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445 G GG+RD+GKRP+MGK A +D+ I+T DNPR E+PE+I +I+ G+ +R Sbjct: 359 GAGGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGVEDKGKVKVIPDR 418 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI A+ + + D++ + GKGHE + G K D +++++ L Sbjct: 419 REAIAEALNIAKEGDIVAILGKGHEDYQEIK-GVKYPFSDSEVLKKFL 465 >gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 495 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 168/499 (33%), Positives = 264/499 (52%), Gaps = 26/499 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DLI ++ ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 11 KLKDLIENIDA------METNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYID 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AI GA +VV + + + NTRK L++ ++ +G ++ + Sbjct: 65 EAIKNGARLVVVDEFFDTSKIEGKVD----YIKTSNTRKALAVMSANFFGHPSKDFLLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S ++ I + + IG + I S + + TTP L K + Sbjct: 121 VTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 181 NEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSK 240 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A DD++ K +++ + + K + NK Q + GK Sbjct: 241 KRVVNA----DDSWGKRIIEMYPDCVT---YAKDSDAQVCAKNIKLFVNKNQFEMWYNGK 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + +PG F +YN+L AA CI++GI+ + + LE L VPGRFE V +N R I Sbjct: 294 KEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FTI 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT D Sbjct: 353 VIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSD 412 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET I Sbjct: 413 NPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQI 472 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + I+++IL Sbjct: 473 LKD-RTIPFDERRIVKDIL 490 >gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] Length = 495 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 185/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%) Query: 15 INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S ++V ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A RV+ G+ L Q + S +G+ PL G FQ Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAA L I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L++AGKGHE+ +V + D + Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484 >gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus Kuenenia stuttgartiensis] Length = 489 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 163/500 (32%), Positives = 250/500 (50%), Gaps = 24/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + E+ + ++ DSR ++ G+IFVAI G K DGH FI Sbjct: 1 MKLSEI-------CAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA A+V N P +VV N R+ LSL + YG + + Sbjct: 54 SMAIEKGAIAVVAEKGVD-------YVINVPQIVVPNARRALSLLSEYFYGYPSSKMTIV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + F + I + SG + IG S TTP + + LS + Sbjct: 107 GITGTNGKTTTSFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + +EASSH L QHRLDG+ + FTNL +H+DYH+ + Y K++L L Sbjct: 167 LNNNIRYAVIEASSHALSQHRLDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 S + D S + ++ A + + + + N + + Sbjct: 227 DENASAVL--NADHTSSKYFAKSTVAQIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPW 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L G VYNAL AA +G D ++ + LE L+ VPGR E + Sbjct: 285 GKEVIHLKLTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDYGQ-DFH 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT ++L+++L+ +R I + RII+VFGCGGDRD+GKR MG IA +D+ +T+ Sbjct: 344 VLIDYAHTHDALQVVLETLRGIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWITN 403 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSEDP I EI GI + + +R AI A+ K DV+V+AGKGHE I Sbjct: 404 DNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKGHERCQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + DC++++++L Sbjct: 464 LKD-KSIPFDDCEVVKQVLS 482 >gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] Length = 484 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 158/505 (31%), Positives = 249/505 (49%), Gaps = 33/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I+ + +I V+ DSR I+ G +F+A+ G + DGH FI Sbjct: 1 MKLSELLKNVSPIAIHG-------NTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ QGA A++ L++ T+ N + V +T + A+ YG ++ Sbjct: 54 GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + + I+ TTP PI L L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ G + +E SSH + Q R+ G+ + G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ ADD +++ + + + ++ G Sbjct: 227 LPKNAFALTNADDKNGMFMVQNTKASVKTYSIKRMADFRAKILECHFEGMYLEIDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G +I V G GG RD+GKRP+M + A+ +D I Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EAIRTA M K DV++VAGKGH Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E + NG K D ++IREI G Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483 >gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] Length = 492 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 145/506 (28%), Positives = 241/506 (47%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ P + +I +++DSR ++ G++FV + G DGH F Sbjct: 1 MFLRDLLMPLLP-------VTVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA+ GA A++ + I+ V +TR+ +++ A R++G + ++ Sbjct: 54 AQAVKNGAVAVLSEQDLDVPA---------TIVKVPDTRRAMAMLADRIFGSPTKEVKVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + +I + + IG ++ + TTP I L ++ + Sbjct: 105 GVTGTNGKTTTTHLIDKILRDQSKQTGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + +E SSH L+ R+ G ++ FTNL +DH+DYH+T + Y AK Sbjct: 165 CDVNTDYAIIEVSSHALELGRVRGCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ ADD S+ + Q + K++ T Sbjct: 225 GNGYDTDRLKTAVLNADDEASELYA--TVTPARVITYGIDQPADVRAKQIEITSKGTSFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G+F VYNAL A + +A GI + LE++ V GRFE V Sbjct: 283 VESFAGSARLNLRLMGKFNVYNALAAIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAG 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDY+HT +SLE L ++ G + + GCGGDRD+ KRPIM +IA AD+ Sbjct: 343 Q-PFAVLVDYSHTPDSLENALMTVKEFARGNVFCIVGCGGDRDRTKRPIMAQIATKYADL 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ++T DNPRSE+P+ I +++ G+ + +R EAI A+ + DV+++AGK Sbjct: 402 TVLTSDNPRSEEPQAILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAGK 461 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET I+ + + D ++ RE + Sbjct: 462 GHETYQIIKD-QVLPFDDREVAREAI 486 >gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase-like protein [polymorphum gilvum SL003B-26A1] gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative-like protein [Polymorphum gilvum SL003B-26A1] Length = 489 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 289/474 (60%), Gaps = 3/474 (0%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P ++ +++DSR ++ G++F A+ G DG F+P+A+ QGA A++ + + Sbjct: 12 LPHPPPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVAVLTDAQGAA- 70 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + T+ + P+LV + R+ L+L A+R YG+ P ++AVTGTSGK+SVA FV+QI + + Sbjct: 71 ALAGTMPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHA 130 Query: 141 GLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G +S +G T++S + LTTP P+ L L+ L+ +G+TH ++EASSHGL+QHRL Sbjct: 131 GHASASLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEASSHGLEQHRL 190 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG++L+AG+FTNLGRDH+DYH T++ Y AK+RLF +LLP ++ + + V+ Sbjct: 191 DGVRLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAV 250 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A G + +VG +G + L + Q++T+ D+ PL G FQV NAL+AA Sbjct: 251 ARERGLHIFTVGERGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAA 310 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 GL I G + VL LE L PGR E VG + G ++VDYAH ++LE L +R Sbjct: 311 GLAITAGEATGAVLRALEDLEGAPGRLELVGRKANGALVFVDYAHKPDALENALAALRPF 370 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 T GR+ VV G GGDRD GKRP+MG A AD+ IVTDDNPRSEDP IR ++ G P Sbjct: 371 TCGRLFVVIGAGGDRDPGKRPLMGAAAARHADVVIVTDDNPRSEDPAAIRKAVLAGAPDA 430 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E G+R AI A+ L DVL VAGKGHET IV + D D +R L Sbjct: 431 LEIGDRGAAIAEAVARLEAGDVLCVAGKGHETGQIVGD-TVLPFSDHDAVRAAL 483 >gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] Length = 489 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 149/478 (31%), Positives = 241/478 (50%), Gaps = 13/478 (2%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + DSR + G +FVA+ G++ D F+PQAI+ GA A+++ + + S Sbjct: 13 LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSI 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 ++N P++ + LS A + YG E + + VTGT+GK++V+ + Q G Sbjct: 73 QWQNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGH 132 Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G ++ + TT S + + L+ +G S+E SSHGL Q+R++ Sbjct: 133 KAAVMGTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYRVEA 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K + FTNL RDH+DYH+T + Y AK R F +L + + ADD + Sbjct: 193 LKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQI--LNADDPIGAAWLNELP 250 Query: 262 NAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 N+ + ++++ ++ H + + PL G F V N L+A Sbjct: 251 NSIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLA 310 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +A+G ++ + +L V GR E + + + VDYAHT ++LE L + R Sbjct: 311 TAVLLALGYSFDDLIRTVSQLKGVNGRMELIKKAGKPT-VIVDYAHTPDALEKALNSARQ 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G++ +FGCGGDRD GKRP+M K A AD+ IVT DNPR+EDP KI A+I+ G Sbjct: 370 HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSR 429 Query: 439 FI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI+ IE + DV+V+AGKGHE I+ + + D ++ L Sbjct: 430 MEDVGVIPDREEAIKFTIENAVEDDVIVIAGKGHENYQIIGD-KTLHFSDQEVAEAYL 486 >gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] Length = 495 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 158/514 (30%), Positives = 247/514 (48%), Gaps = 37/514 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L EL+ ++ + +I + +DSR + G +F+ + G+ DGH + Sbjct: 1 MRLSEL-----AELL--ITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 PQA A+GA A VV L + P L+V ++R +++ A YG +++ Sbjct: 54 PQAAAKGAVAFVVERELEL---------DAPQLIVKDSRLAMAVLADHFYGHPSNALHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++QI + +S IG + + TTP + L + LS + Sbjct: 105 GVTGTNGKTTTTYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 +G + ++E SSH L+Q R+ G + FTNL +DH+DYH T + Y AK Sbjct: 165 RKEGTAYCAIEVSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRL 224 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + A++ DD S++ K + + Sbjct: 225 GNEYAAKAEDRAYAVLNVDDPVSEQFAKLTAAEVITYGIDNHADV--RASNIRISAQGTT 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +S D + G+F VYNAL A + G+ + LE + VPGR E V Sbjct: 283 FRVSTFRGKTDIALQMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQ 342 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT + LE +L+ ++ + RII VFGCGGDRD+ KRPIMG IA A Sbjct: 343 AGQE-FAVVVDYAHTPDGLENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAARYA 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D +VT DNPR+EDP+ I +I G+ + K +R AI A+EM + DV++ Sbjct: 402 DYVLVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 +AGKGHET I+ + D + +E + +L Sbjct: 462 IAGKGHETYQIIGS-VTHPFDDRLVAKEAIRGLL 494 >gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] Length = 467 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 177/456 (38%), Positives = 258/456 (56%), Gaps = 2/456 (0%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR ++ G++F A+ G K G FI A+ QGA AI+ + + + S+ ++V Sbjct: 1 MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 ++ R+ L+ A+ +G PE ++AVTGT+GK+SVA+F +QI +R G + +G T Sbjct: 61 AEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEG 120 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +++ TTP PI L + L+ GVTH ++EASSHGL Q RLDG+ L+A FTN + Sbjct: 121 AYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFTQ 180 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ- 273 DH+DYH + YF AK LF +LP++ A+I +D+ E+ A G +++VG + Sbjct: 181 DHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGREV 240 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 G + LK Q + E + L G FQ N L+AAGL I G D+ V Sbjct: 241 GADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERVF 300 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 E L + V GR + T G ++VDYAHT +++ +K +R GR+I + G GGD Sbjct: 301 ETLPGMKTVRGRMQLAATRDTGATVFVDYAHTPDAVATAIKALRPHVMGRLIAIVGAGGD 360 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453 RD+ KRP+MG+ A AD+ IVTDDNPRSEDP IRA ++ G PG E G+R EAI + Sbjct: 361 RDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGDRAEAILRGV 420 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + L D L++ GKGHET +V + D + Sbjct: 421 DALGPGDALLICGKGHETGQVVGE-DVLPFDDAEQA 455 >gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 494 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L + +I ++++DSR ++AG +F+A+ G DGH ++ +AI G Sbjct: 2 KQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS + + ++ V++TR + + ++ VTGT+G Sbjct: 62 AVAVLVSKPVEVSG-------DICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + TTP + L L + +GVTH Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AII DDAY V+++ G ++ V + T+S +G D Sbjct: 235 SGKGAIINIDDAYGHRVVEKTKAPIITYSIDG--NGTLNAHDVDMTPKSSRYTVSYDGHD 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + L+ VPGRFE + + + Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DN Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 412 PRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494 >gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nostoc punctiforme PCC 73102] gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC 73102] Length = 500 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 163/500 (32%), Positives = 257/500 (51%), Gaps = 15/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + + QL+ P + ++ + ++S G +F+ + G + DG F Sbjct: 1 MKLRELLTAV--DSVEQLASHPT-LEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFW 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AIA GA A +VS + ++ + ++ N + + AS YG + + + Sbjct: 58 QSAIASGAVAAIVSPEAAQKNPPT---NEAVVISASNITQACAQIASAFYGYPGQKLKLV 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + ++ L++ +G + F Q TTP + L + L+ Sbjct: 115 GVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +E SSH L Q R+ G + F+NL +DH+DYH+ + YF AK LF Sbjct: 175 VNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPD 234 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD+Y K ++ + SV + + + N + Sbjct: 235 -YLKGRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPK 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356 D F PL G++ + N L A G + +G+D LV + + VPGR E V N + Sbjct: 294 GDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDI 353 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRPIMG+IA +LAD+A+VT Sbjct: 354 SVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVT 413 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+PE+I +++ GI + +R AIRTAI D +++AGKGHE Sbjct: 414 SDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQ 473 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R+ L Sbjct: 474 ILGT-EKIHFDDREHARDAL 492 >gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] Length = 483 Score = 336 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 195/501 (38%), Positives = 272/501 (54%), Gaps = 29/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + ++ DSR + G++F A++G DG FI Sbjct: 1 MKLSQIF---------------DNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A++ P + V R + A+ Y K PE ++AV Sbjct: 46 QAAIDNGAIAVLTD--------ERDGEWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAV 97 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GKSS F++QI G S +G + + TTP P+ + L+ L++ Sbjct: 98 TGTNGKSSTVDFLRQIWTELGHVSASVGTLGAVGPSGAVELGHTTPDPVAVQSTLAILAN 157 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGL Q+R+ G++L AG F NL +DH+DYH+ + YF AKM+LF ELLP Sbjct: 158 EGVTHCAMEASSHGLAQYRMHGVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLP 217 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--- 296 + +PAII AD + + A A + +VG++G + + ++ + Q++ + E Sbjct: 218 EGAPAIINADSDMKDKALAIATAANLKPFTVGWRGDHLWIDEISPRNTGQKLQLQWETPE 277 Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 K+ PL GEFQ NAL AAG+ +++G D V +EKL V GR E V G Sbjct: 278 GDKETIVNLPLIGEFQALNALAAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNG 337 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I+VD+AHT + L+ +L+ R +GR+I VFGCGGDRD GKRPIMG+IA AD IV Sbjct: 338 AGIFVDFAHTPDGLDTLLRAARPHAAGRVICVFGCGGDRDAGKRPIMGEIAAKYADEVIV 397 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ G P E R AI+ I L K DVL++AGKGHET I+ Sbjct: 398 TDDNPRSEDPASIRAAIMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKGHETGQII 457 Query: 476 TNGEKKMSVDCDIIREILGLI 496 GE D + L I Sbjct: 458 K-GETFPFSDHEAALTALAEI 477 >gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] Length = 489 Score = 336 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 230/479 (48%), Gaps = 19/479 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + I + +DSR IQ G +F+A G + DG +I +A+ + A A+ Y ++ + Sbjct: 19 ADVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF----YEANQYNPS 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 I++ P++ +N + + A+R Y + + +TGT+GK+S A F+ Q Q G+ Sbjct: 75 IQTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIR 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TTP PI L +A + + QG +++E SSH L Q R++G+ Sbjct: 135 CGVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEGV 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FT L RDH+DYH + Y AK LF++ DDA K ++ + Sbjct: 195 QFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQPGLHTGVVNC--DDALGKRIIAHYRH 252 Query: 263 A-----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + + + V + + F PL G F + N L Sbjct: 253 QLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLLA 312 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + I L L +L VPGR + V + + I VDYAHT ++LE L +R Sbjct: 313 VLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQ-IIVDYAHTPDALEKALTALR 371 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR+I VFGCGGDRD+GKRP M +A AD I+T+DNPR+E P I +I G Sbjct: 372 EHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQAGFK 431 Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + K +R EAIR A++M D++++AGKGHET + + + D + ++ L Sbjct: 432 NKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKGHETTQTIAD-QVLPFNDVEEAKKAL 489 >gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] Length = 493 Score = 336 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 181/478 (37%), Positives = 262/478 (54%), Gaps = 2/478 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + L + +E +I ++ DSR ++ G++F A+ G K G FI A+ GA A++ Sbjct: 6 KTLADLGLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + S+ ++V + R+ L+ A+ +G PE ++ VTGT+GK+SVA+F Sbjct: 66 TDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATF 125 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T ++ + TTP PI L + L+ ++ GVTH ++EASSH Sbjct: 126 TRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSH 185 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG++L A FTN +DH+DYH T AYF AK LF +LP + A+I +D Sbjct: 186 GLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPR 245 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A G R++SVG+ + Q V +G+ L G FQ Sbjct: 246 GAEIALLAAERGQRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLIGGFQ 305 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N +AAGL I G + V L +L V GR + T G ++VDYAHT +++ Sbjct: 306 AENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVDYAHTPDAIAT 365 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRI+VVFG GGDRD KRP+MG+ A + AD+ VTDDNPRSEDP IRA Sbjct: 366 ALKALRPHVMGRIVVVFGAGGDRDTTKRPLMGQAAREHADVLYVTDDNPRSEDPATIRAA 425 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L+VAGKGHE+ ++ G+ D + Sbjct: 426 IMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKGHESGQVIK-GDVYPFDDVEQA 482 >gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] Length = 496 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 163/507 (32%), Positives = 254/507 (50%), Gaps = 28/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L I + ++ V +D+R + G +FVAI GNK DGH FI Sbjct: 1 MKLQHLFSIL-------PGIPENAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P A+A+GA A+VV + + + ++ V N+R+ L + ASR Y + + Sbjct: 54 PDAVAKGAAALVVEDKAKIPEGYEGV-----VVQVPNSREVLDVLASRFYWDPGQELFCV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV + I + + IG + + +TTP P++L K L Sbjct: 109 GVTGTNGKTSVTYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLREF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S G V++E SSH LDQ R+D + FTNL RDH+DYH T ++Y AK RLF +L Sbjct: 169 RSAGALAVAMEVSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDL 228 Query: 238 LPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L K +A + + +R + + G + I + + + Sbjct: 229 LWKTHKRPCFAIVNTADKFGRRLRVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTP 288 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+ G V NAL A G ++ G+ + +E L++ VPGR + V N + Sbjct: 289 VGEGEVRLPMSGTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPGRLQSVP-NDKNL 347 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 ++VDYAHT ++LE +L + + RI +FGCGGDRD+GKRP+M ++AL +D Sbjct: 348 SVFVDYAHTPDALENVLMALTKVRENLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKYSD 407 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 ++T DNPR+EDP+ I +I+ G+ +R +AI ++ + DV+++AG Sbjct: 408 EVVITSDNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRAQEGDVILIAG 467 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE I+ +K D + E L Sbjct: 468 KGHEDYQIIGT-QKFPFSDVKVAEEAL 493 >gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga ochracea DSM 7271] gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea DSM 7271] Length = 486 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 159/505 (31%), Positives = 248/505 (49%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ + + ++ I V DSR + G +FVAI G + +GH +I Sbjct: 1 MNLKTLLKNITIK-------TSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 QAI GA AIV +VV N+ L+L A+ YG E ++ Sbjct: 54 DQAIRSGATAIVCEQ------LPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + Q+ +++G + + + + TTP P+ L L + Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV + +E SSHG+DQHR +G++ G FTNL RDH+DYH+T AY + K R F+ Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A++ DD +++ + ++ + + + Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTHADYKAYIIESRFDG------LLLRI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L GEF YN L + ID L + + V GRF+ ++ G Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQ-YAVSATGVI 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+D I+ Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+E+PE I +E+ G+ +R +AI++ + K D++++AGKGHE Sbjct: 400 TSDNPRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 T + G + D +I+RE L L Sbjct: 460 TYQEIK-GVRHHFDDFEIVREYLEL 483 >gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] Length = 495 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%) Query: 15 INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A RV+ G+ L Q + S +G+ PL G FQ Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAA L I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L++AGKGHE+ +V + D + Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484 >gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 497 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 248/505 (49%), Gaps = 26/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E++ I +E + ++++S+ ++ + F AI G DGH FI Sbjct: 1 MKL-------LKEILTDEKII-YGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AI GA I + ++ N +++ DN RK L+L ++R Y E ++ Sbjct: 53 DEAIKNGASVIFIEDEKYIESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 A+TGT+GK++ ++ + Q + +G IG + + TTP P+ K L + Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V E SSH DQ+R+ K G FTNL +DH+DYHQT + YF AK R+FE++ Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQI 229 Query: 238 LPKESPAIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 AI + + ++++ G + + + + Sbjct: 230 DKFNKEAIYSINVDDEHGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + L G F +YN I G D + E L + GRFE Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEV--I 347 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 +G + +DYAHT ++LE ILK++ I RII VFG GG+RD+ KRP+MG+ A L+D Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSD 407 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I+T DNPR+EDP I +I+ GI I +R +AI AI + ++D++++AGKG Sbjct: 408 VVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HE I+ + + D ++++EI+ Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491 >gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] Length = 495 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%) Query: 15 INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + LS + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A RV+ G+ L Q + S +G+ PL G FQ Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAA L I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRI+VVFG GGDRD+GKRP+MG+ A + AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L++AGKGHE+ +V + D + Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484 >gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] Length = 484 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 158/505 (31%), Positives = 249/505 (49%), Gaps = 33/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I+ + +I V+ DSR I+ G +F+A+ G + DGH FI Sbjct: 1 MKLSELLRNISPIAIHG-------NTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ QGA A++ L++ T+ N + V +T + A+ YG ++ Sbjct: 54 GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + + I+ TTP PI L L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ G + +E SSH + Q R+ G+ + G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ ADD +++ + + + ++ G Sbjct: 227 LPKNAFALTNADDKNGMFMVQNTKASVKTYSIKRMADFRAKILECHFEGMYLEIDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G +I V G GG RD+GKRP+M + A+ +D I Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EAIRTA M K DV++VAGKGH Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E + NG K D ++IREI G Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483 >gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] Length = 500 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 161/510 (31%), Positives = 253/510 (49%), Gaps = 36/510 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQDL+ + ++ +V++DSR G +F+A+ G+ DGH F+ Sbjct: 1 MRLQDLVSALLH------VRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA A VV P +VV +TR+ ++ A+ + ++ Sbjct: 55 DEARRSGAVAAVVEDCLDTP---------LPQIVVPDTRRAAAVLAAVFFRHPSRAMRVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V + + + G + IG T + TTP + L + + + Sbjct: 106 GVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 GV+H +E SSH L+ R+ G + FTNL +DH+D+H + +AY AK Sbjct: 166 RDAGVSHAVMEVSSHALELDRVAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARL 225 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + ++ A++ DD K + ++ + + ++V + Sbjct: 226 GNEYGDTRADQAFAVVNLDDPVGKWMARQTTAQTVTYGV--DRPADLRAREVEVDTRGVR 283 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +EG+ PLPG F VYN L A G G+D + + L ++ VPGR E V Sbjct: 284 FVAEIEGRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVD 343 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT +SL+ +L+ +R + SGR+IVVFGCGGDRD+ KRP+MG+IA A Sbjct: 344 AGQ-PFGVVVDYAHTPDSLDNVLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYTRA 402 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D AI+T DNPR+EDPE+I +I G+ + +R EAIR AI + ++DV++ Sbjct: 403 DYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDVVL 462 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ K D R+ L Sbjct: 463 IAGKGHETYQIIGR-RKFPFDDRVEARKAL 491 >gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] Length = 480 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 200/475 (42%), Positives = 278/475 (58%), Gaps = 3/475 (0%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P I +++DSR +Q G++F A G+ DG F+P+A+ A A++ ++ + + Sbjct: 3 LPDTADGLSIEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATN-AAE 61 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A + +L D R S A+R YG+ P+ I+AVTGT+GK+SVA FV+QI Q + Sbjct: 62 AVRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAA 121 Query: 141 GLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + +G I + LTTP P+ L K L+ L+++G+ + ++EASSHGLDQ+RL Sbjct: 122 GHPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL 181 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG++L A +FTNLGRDH+DYH T + Y AK+RLF ELLP ++ + Y+ V+ Sbjct: 182 DGVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAI 241 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A G V +VG GK + L + Q +T+ ++ PL G FQV NAL+AA Sbjct: 242 AEERGLPVFTVGETGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAA 301 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 GL I GID+ L LE L PGR E GT GG ++VDYAH ++L+ L ++ Sbjct: 302 GLAITAGIDAGAALRALENLKGAPGRLELAGTTPAGGMVFVDYAHKPDALDKALAALKPF 361 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G + VV G GGDRD GKRP+MG+ A AD+ IVTDDNPRSEDP IR ++ G PG Sbjct: 362 AEGSLSVVVGAGGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATIRKAVLAGAPGG 421 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R EAI I L D+L VAGKGHET IV + D D +R+ L Sbjct: 422 LEIGDRAEAIAEGIRRLKSGDILCVAGKGHETGQIVGD-TVIPFSDHDSVRQALN 475 >gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] Length = 482 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 161/494 (32%), Positives = 241/494 (48%), Gaps = 25/494 (5%) Query: 10 DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 F ELI + + I V DSR ++ G +FVAI G + DGH +IP+AI GA Sbjct: 2 TFSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 AI+ A + N VV +T + A+R +G + ++ VTGT+GK Sbjct: 62 AAILCEEA------PQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++VA+ + + ++ G + + I TTP PI L + L+ + + G +V Sbjct: 116 TTVATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYV 175 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH + Q R+ G+ G FTNL RDH+DYH+T + Y NAK F + LPK + AI Sbjct: 176 FMECSSHAIAQKRIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKK-SFFDGLPKSAFAI 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ADD +++ + + + + G F F Sbjct: 235 TNADDKNGMVMVQNTKASVKTYSIQSMADFKARIIECHFQGMYLAIDGQEVGVQFTGKFN 294 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + N L G +G L + LH V GR + + + G VDYAHT Sbjct: 295 VS------NLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTL-QSPEGFTAIVDYAHT 347 Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++L+ +L I + G II V G GG+RD+GKRP+M K A+ L+D I+T DNPR ED Sbjct: 348 PDALKNVLLAIHEVDGKGHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFED 407 Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P+ I +++ G+ + +R EAIRTA + KQDV++VAGKGHET + G Sbjct: 408 PQDIINDMLAGLDAQDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKGHETYQEIK-GV 466 Query: 480 KKMSVDCDIIREIL 493 K D +++R+I Sbjct: 467 KHHFDDKEVLRDIF 480 >gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] Length = 496 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 161/500 (32%), Positives = 249/500 (49%), Gaps = 19/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + + +I + ++S G +F+ + G + DG F Sbjct: 1 MKLRELLAAVD-------GVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFW 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AIA GA A +VS A ++ +L + + + A+ YG + + + Sbjct: 54 QSAIASGALAAIVSPAALQKNPPTGEAV---VLSAADMTQACAQLAAAFYGYPGQKLKLV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + ++ LS+ +G F Q TTP + L + L+ Sbjct: 111 GVTGTNGKTTTTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEA 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++E SSH L Q R+ G + F+NL +DH+DYH + YF AK LF Sbjct: 171 VNAGCEFGAMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPE 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD Y + ++ + SV + + + N + Sbjct: 231 -YLKGRAIINADDDYGQRLIASLSSERVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPK 289 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 + F PL G++ + N L A G + +G+D LV + + VPGR E V N + Sbjct: 290 GNVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEI 349 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP MGKIA +LAD+A++T Sbjct: 350 SVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRTKRPKMGKIAAELADVAVLT 409 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPE+I +++ GIP + +R AIRTAI D +++AGKGHE Sbjct: 410 SDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R+ L Sbjct: 470 ILGT-EKIHFDDREHARDAL 488 >gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] Length = 495 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%) Query: 15 INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A RV+ G+ L Q + S +G+ PL G FQ Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAA L I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L++AGKGHE+ +V + D + Sbjct: 428 ILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484 >gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] Length = 490 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 235/476 (49%), Gaps = 12/476 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + +S++S Q G IF+ + G + DG F A+ GA A ++S + + Sbjct: 17 ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFPP--- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +++VD+ + A+ YG + ++ VTGT+GK++ ++ +S + Sbjct: 74 NDDQCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQKPT 133 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG F Q TTP L + L+ + + +E SSH L Q R+ Sbjct: 134 ALIGTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRVKQCP 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H+ + YF+AK LF + AII DD Y K +++ Sbjct: 194 FKVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPD-YLQEKAIINLDDPYGKRLIESFKPE 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 SV + + N T+ +F PL G+F + N L A + Sbjct: 253 QVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAVL 312 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 G+D +E L VPGR E V N + + VDYAHT +SLE LK R G Sbjct: 313 HFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARPFVKG 372 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441 ++I VFGCGGDRD+ KRP+MG+ + LAD+++VT DNPR+EDP++I +I+ GI +E Sbjct: 373 KLICVFGCGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQSVEP 432 Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R EAI+TAI D +++AGKGHE I+ EK D + R+ L + Sbjct: 433 LVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQILGT-EKIHFDDREEARKALEM 487 >gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] Length = 494 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 251/504 (49%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L ++ +I +V++DSR ++AG +F+A+ G DGH ++ +A+ G Sbjct: 2 KQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS + S+ ++ V++TR + + ++ VTGT+G Sbjct: 62 AVAVLVSKPVE-------VSSDVCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + + TTP + L L + +GVTH Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIK 234 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DDAY V+++ G ++ V + T+S +G D Sbjct: 235 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + L+ VPGRFE + + + Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DN Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 412 PRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494 >gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] Length = 487 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 146/498 (29%), Positives = 231/498 (46%), Gaps = 26/498 (5%) Query: 9 KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL+N +++ + +R+I + DSR I+ G +F+A G DGH FI +A+ +G Sbjct: 2 KKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A+V + +T + L + A + ++ VTGT+G Sbjct: 62 AVAVVCEQ------LPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ A+ + ++ + +G + + + I TTP + + + L + G + Sbjct: 116 KTTTATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRY 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +EASSH + Q R+ G+ F+N+ DH+DYH+T +AY AK F + LP + A Sbjct: 176 CFMEASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKK-AFFDRLPAHAFA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ADD +++ + ++ F F Sbjct: 235 LTNADDKNGLVMLQNTRAHRYTYSCRTMADFTAKAIEKHLDGTLLRLDGEEVWTKFTGDF 294 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 YN L +G VLE++ L V GRFE + ++ G VDYAH Sbjct: 295 NA------YNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETL-ISTEGVMAVVDYAH 347 Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T +++E +L I + ++I V G GGDRD+ KRP M A +D I+T DNPRS Sbjct: 348 TPDAVENVLSTICGLKGRDNQVITVVGAGGDRDKTKRPEMADAACRYSDHVILTSDNPRS 407 Query: 423 EDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EDPE+I +++ G+ +R EAIR AI M +K D+++VAGKGHE V Sbjct: 408 EDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKGHENYQEVK- 466 Query: 478 GEKKMSVDCDIIREILGL 495 G K D ++IREI L Sbjct: 467 GVKHHFDDKEVIREIFDL 484 >gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] Length = 486 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 163/493 (33%), Positives = 248/493 (50%), Gaps = 26/493 (5%) Query: 11 FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+N++ + + R+I E+ DSR + ++VA+ G DGH FI AI +GA Sbjct: 3 ITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAA 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + T+ N ++V ++ K L AS YG + + + VTGT+GK+ Sbjct: 63 AVVCE------ELPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV++ + + + G + + I TTP I + + L+ +G Sbjct: 117 SVSTLLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAF 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHG+ Q+R++G+ FTNL DH+DYH+T + Y K R F+E L + AI Sbjct: 177 MEVSSHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDE-LEDTAIAIT 235 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD +++ L +V ++ GK+F Sbjct: 236 NVDDKNGNVMLQNTKAKKKSYALKTMADYHGKLLEVDFNGM----LLNFNGKEFWTTL-- 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F VYN L+ G+ +G + +L+ + KL V GRFE + G VDYAHT Sbjct: 290 TGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETFK-SDGGIFFIVDYAHTP 348 Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++LE IL +I I + R+I VFGCGGDRD KRP MG IA + +AI+T DNPR+ED Sbjct: 349 DALENILDSINDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAIITSDNPRTED 408 Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P +I EI G+ + +R EAI+ AI+ +D+++VAGKGHET + NG Sbjct: 409 PTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKGHETYQEI-NGV 467 Query: 480 KKMSVDCDIIREI 492 K D ++I E+ Sbjct: 468 KHHFDDKEVINEL 480 >gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] Length = 483 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 163/504 (32%), Positives = 245/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P + + + I V+ DSR I G +F+A+ G + DGH FI Sbjct: 1 MKLNELLKNIKP-------VAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AI QGA+AI+ D + V++T A+ YG + ++ Sbjct: 54 PKAIEQGAKAILCE------DMPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VNTGCEYAFMECSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDE 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + AI ADD +++ + + + + G Sbjct: 227 LPKGAFAITNADDKNGMIMVQNTKATVKTYSTRSAADFKARILECHFEGMYLDIDGHEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G +G +L + LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIH-SPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +LK I + + G++I V G GG+RD+GKRP+M + A+ +D I+ Sbjct: 340 AIVDYAHTPDALENVLKAIHEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T + G K D +I+ I G Sbjct: 460 TYQEIK-GVKYHFDDKEILNNIFG 482 >gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Haemophilus influenzae 10810] Length = 488 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] Length = 488 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 149/503 (29%), Positives = 244/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +++ ++ +++I+ + DSR I+ G +FVA+ G + DGH +I Sbjct: 1 MKLGNILQAITTGMVKG-------NLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AI +GA A+V + T+ + V+++ + A+ YG ++ Sbjct: 54 GKAIEKGATAVVCET------LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 168 ADEGCKYAFMEVSSHAVAQKRIGGLKFAGGIFTNLTRDHLDYHKTFENYLKAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K + A+ ADD + + + + ++ Sbjct: 227 LLKTAFALTNADDRNGLVMTQNTKAKVATYSLRSLADFKGKVLEDGFEGML------LDI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G F N L +G VL L L V GRF+ + +++G Sbjct: 281 NNREVNVQFIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLR-STKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + +GR +I V G GG+RD+GKRPIM + A+ L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNTIHEVLNGRGKVITVVGAGGNRDKGKRPIMAQEAVRLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +++ EI Sbjct: 460 NYQDIK-GVKHHFDDKEVLSEIF 481 >gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] Length = 484 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 154/464 (33%), Positives = 223/464 (48%), Gaps = 16/464 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++ DSR + G +F+A+ G DGH FI AI +GA AI+ +Q + P Sbjct: 21 DITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-----DTQVP 75 Query: 92 ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + VVD R L A R YG H ++ +TGT+GK+S +V Q G IG Sbjct: 76 VCVVDGLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGT 135 Query: 150 TSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 D TTP I L + LS SQG ++E SSHGLDQ R+DG+ Sbjct: 136 NGQGLWGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAV 195 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH + +AYF AK RL + + D + + A Sbjct: 196 FTNLSRDHLDYHHSMEAYFEAKWRLMRWPGLRNAVV---NLDDEWVQKNRERIMAERVWT 252 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + +V + D D L G F + NAL A + +A G+ Sbjct: 253 YALETDADVQALEVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVP 312 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + + V GR E + + + VDYAHT ++LE L++ R +GR++V+F Sbjct: 313 VNTAARVISNCNPVKGRMETLRSAYSPT-VVVDYAHTPDALEKALQSCREHVNGRLVVIF 371 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445 GCGGDRD GKRP M ++A AD+ +VTDDNPR+E +I A+I G + +R Sbjct: 372 GCGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQGFSTEANYRVIPDR 431 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 EAI + + DV+++AGKGHE+ + +G + D D + Sbjct: 432 REAIVQTLNDSERSDVVLIAGKGHESYQEI-DGVRHPFSDQDTV 474 >gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] Length = 486 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 230/495 (46%), Positives = 318/495 (64%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL N+L + + +I +++DSR G +FVA+ G K DG ++ Sbjct: 1 MNLRDISGTAFPEL-NELLLSEIGA--IEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A V+ + ++ P+L V + R +LSL ASR YGK PE ++AV Sbjct: 58 KDA---------VAKGAVAVVSGHAVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASFV+QI +G ++ QIG T I+ +D LTTP P+ L L+ L++ Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAA 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL A FTNLGRDH+DYH T + Y AKMRLF+ L+ Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + ++ A +AG V +VG +G ++ LK+V +KQ + + +G Sbjct: 229 KGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G+FQV NALVAAGL ++ G+ +A ++ LEKL GR E VG G Y Sbjct: 289 HEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R TSGRII VFGCGGDRD+GKRPIMG++A L+DI IVTDDN Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSED IR+E++ PG +E G+R EAIR A+ +L+ D L+VAGKGHE IV + Sbjct: 409 PRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKGHEEGQIVGS-V 467 Query: 480 KKMSVDCDIIREILG 494 D + +R L Sbjct: 468 TLPFSDHEQVRTALE 482 >gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] Length = 488 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 250/505 (49%), Gaps = 32/505 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+D++YK I + I+ + DSR + AG +FVAI G + DGH +I Sbjct: 3 NLKDILYKVKL-------ISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYIS 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 +AI QGA AIV D + I + DN+ K L + A+ +G E ++A Sbjct: 56 KAIEQGAVAIVCE------DIPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIA 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ S + Q+ G + I + I++ TTP + L L + Sbjct: 110 VTGTNGKTTTVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMV 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G V +EASSH ++Q R+ G+KL FTN+ +H+DYH+T Y AK +LF++ L Sbjct: 170 DSGCNIVFMEASSHAIEQERMAGLKLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDD-L 228 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P ++ A++ DD +++ + + + + Sbjct: 229 PSDAFALVNVDDKRGMVMLQNCKASKYTYSLKMMAIYKAKVLSNSIQG------LELNID 282 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D F G F YN L A + +S VL +L ++ + GRFE V N+ G Sbjct: 283 QKDVWFRQIGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFEQVP-NNAGITA 341 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++LE +L+ I +G + V GCGG+RD KRP+M +IA +D I+T Sbjct: 342 VVDYAHTPDALENVLQTIDNFRTGNEQVLTVVGCGGNRDTTKRPLMAEIACRFSDRVILT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR E+PE I A++ G+P +R EAI+ A K D+++VAGKGHET Sbjct: 402 SDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKGHET 461 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 + GE+ D +++RE+L LI Sbjct: 462 YQEIK-GERSHFDDKEVVREMLSLI 485 >gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] Length = 494 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 227/477 (47%), Gaps = 24/477 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + +G +F+ I G DGH F QA A GA AI+ + Sbjct: 25 EITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAILAEKEIDV--------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++ V ++++ +++ A R YG + + + VTGT+GK++V V+QI + +G + Sbjct: 76 SIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVEQIVRDAGSETGL 135 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + + V V++E SSH L Q R G Sbjct: 136 IGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHALVQGRTYGTDFD 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAK-----MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 FTNL +DH+DYH+T + Y AK K AII DD S+ + Sbjct: 196 IAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAIINQDDPVSQRMKTAT 255 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + V + + DFD + G+F +YN L A Sbjct: 256 AAPVITYGI--DKAADFGATDVMVTSSGTTFKLHTPDGDFDVRIKMIGKFSIYNCLAALA 313 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 A+ I + LEK+ V GRFE V + VDYAHT + L +L+ I Sbjct: 314 TSYALEIPIHQAITSLEKVQGVAGRFEIVDAGQ-DFTVIVDYAHTPDGLLNVLETIEEFK 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 R+ + GCGGDRD+GKRP M KIA+D A + T DNPRSEDPE I +++ G+P Sbjct: 373 RSRVFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSDNPRSEDPEAIIQDMLAGLPANA 432 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R EAI A+ DV+++AGKGHET I+ + D + RE + Sbjct: 433 VYQVRTDRKEAITYAVNEAQAGDVILIAGKGHETYQIIGDQVLD-FDDRAVAREAIE 488 >gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] Length = 486 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AIV A + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + +REI Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482 >gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] Length = 488 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2866] Length = 488 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 488 Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 151/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M +IA A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQIAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] Length = 485 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 160/506 (31%), Positives = 249/506 (49%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + ++ + I V+ DSR I G IFVAI G + DGH FI Sbjct: 1 MKLTDLLSEVK-------TLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA+AI+ L+D + ++ + V++T K + A+ YG + + + Sbjct: 54 NKAIESGAKAIL------LEDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + + G + + I + A TTP PI L + LS + Sbjct: 108 GVTGTNGKTTIATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + QHR+ G+ G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDS- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + + G Sbjct: 227 LPKKAFAITNADDKNGMIMVQNCKANIKTYSIQRMADFRARIIECHFEGMYLDIDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L L L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIR-SPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G+ I V G GG+RD+GKRP+M + A+ +D+ I Sbjct: 340 AIVDYAHTPDALSNVLSAIHDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSDVVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EA+RTA ++ K DV++VAGKGH Sbjct: 400 LTSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + G K D +++R+I + Sbjct: 460 EDYQEIK-GVKHHFDDHEVLRDIFNI 484 >gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] Length = 488 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] Length = 488 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK LF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] Length = 486 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 249/505 (49%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ + + ++ I V DSR ++ G +FVAI G + +GH +I Sbjct: 1 MNLKTLLKNISIKA-------SLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA GA AIV + + ++V NT L+L A+ YG E ++ Sbjct: 54 DQATRSGATAIVCEQ------LPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + Q+ +++G + + + + TTP P+ L L + Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV + +E SSHG+DQHR +G++ G FTNL RDH+DYH+T AY + K R F+ Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A++ DD +++ Y ++ + + + Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTYSDYKAYIIESRFDG------LLLRI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L GEF YN L +GID L + + V GRF+ + G Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQ-YAVSVTGVI 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+D I+ Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+E+PE I AE+ G+ +R +AI++ + K D++++AGKGHE Sbjct: 400 TSDNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 T + G K D + +RE L L Sbjct: 460 TYQEIK-GVKHHFDDFETVREFLEL 483 >gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] Length = 471 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 235/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVAIVG++ DG +IPQAIAQG AIV + D S P+ Sbjct: 1 MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + ++ VTGT+GK++ + + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G++G ++ +V N +T + L G F V N LVA +++ Sbjct: 239 GHLPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ + Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470 >gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] Length = 488 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + GL + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGLRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTKLPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium johnsoniae UW101] gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium johnsoniae UW101] Length = 487 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 252/505 (49%), Gaps = 33/505 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++YK E + + I ++ DSR +++ +FVAI G+ DGH + Sbjct: 1 MKVLKDILYKVTIESVTGS-------TDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +AI GA+AI+ I+ + + V +T L+ A+ +G + Sbjct: 54 IEKAIQLGAKAIICDK------LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++AS + Q+ +++G + + TTP + + L+ Sbjct: 108 VGVTGTNGKTTIASLLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ GVTH +E SSHG+ Q R + + + G FTNL DH+DYH T Y + K F + Sbjct: 168 MAEAGVTHCFMEVSSHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKK-SFFD 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + + DD +++ Y + + + ++ Sbjct: 227 SLPKTAFVLSNIDDKNGSVMLQNTAAKKLTYALKSYADYRAQILESQLSG------LLLK 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G F YN L G + +GIDS L L L V GRF+ + G Sbjct: 281 VNDNEVWVKLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQ-YIVSDNGI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +LK I I + I V GCGG+RD+ KRPIM KIA DL+D AI Sbjct: 340 TAVVDYAHTPDALENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR+EDPE I E+ G+ + +R +AI+TA ++ +D++++AGKGH Sbjct: 400 LTSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 ET + NG + D + ++EIL Sbjct: 460 ETYQEI-NGVRHHFDDMETVKEILE 483 >gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] Length = 493 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 161/506 (31%), Positives = 244/506 (48%), Gaps = 34/506 (6%) Query: 1 MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L+ + ELIN+ I + DSR ++ G +FV I G DGH Sbjct: 3 MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKEGSLFVCIKGYTVDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 + +A+ GA AIV ++ ++ P+++V ++++ L+ A Y + + Sbjct: 54 DYAEKAVKSGAAAIVAEHPLNI--------TDVPVIIVKHSQRALARIADAFYEQPTHKL 105 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK+S ++Q+ +++ + IG + D + TTP + L K Sbjct: 106 NLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + Q V +E SSH L R+ G FTNL +DH+DYH T + Y +AK LF Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225 Query: 235 E-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K AI+ ADD S K A + Q + K + + Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEK--VTAAEVMTYALEQKADVMAKNIQIMPKGT 283 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 Q + L G+F VYN L A + I G+ ++ +E+L V GRFE V Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VDYAHT +SLE +L R +T G+I V GCGGDRD+ KRP M +IA+ Sbjct: 344 NCDQ-DFPVIVDYAHTPDSLENVLTTCRELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD + T DNPRSEDP I ++ +G+P + NR +AI AI K D +++AGK Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET I+ + + D I + + Sbjct: 463 GHETYQIIGD-QVYDFDDAKIAVDAI 487 >gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] Length = 488 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 239/488 (48%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 485 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 241/505 (47%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + ++ R I ++ DSR +Q G +FVA+ G + DGH +I Sbjct: 3 MELDILLKSVSVVRVTGDTV-------RNITGINMDSRLVQPGDLFVAVKGTQADGHAYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A+ +GA A+V + + + V ++ + A+ YG ++ Sbjct: 56 GKAVEKGAVAVVCEA------WPEVQAEGVTYVQVKDSESAVGRLATVFYGDPTSKLQLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + + G + I A TTP PI L + L + Sbjct: 110 GVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + QHR+ G+K G FTNL RDH+DYH+T + Y +AK F + Sbjct: 170 ADEGCKYAFMEVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ DD +++ + + ++ Sbjct: 229 LPKGAFAVTNVDDRNGMIMVQNTKAVVKTYSLRAAADFKAKVLEESFEGMC------LDV 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + P G F V N L + +G + VL L L V GRFE + G Sbjct: 283 NGKEVSVPFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFE-TIRSKEGVT 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L + I R +I V G GG+RD+GKRPIM + A+ +D I+ Sbjct: 342 AIVDYAHTPDALVNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P++I +++ G+ I +R EAIRTA M DV++VAGKGHE Sbjct: 402 TSDNPRFEEPQEIINDMLAGLDKEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 V G K D ++I+E+ G+ Sbjct: 462 DYQEVK-GVKHHFDDHEVIKEVFGI 485 >gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] Length = 496 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 250/504 (49%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L ++ +I +V++DSR ++ G +F+A+ G DGH ++ +A+ G Sbjct: 4 KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAG 63 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS I S+ ++ V++TR + + ++ VTGT+G Sbjct: 64 AVAVLVSKPVE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + + TTP + L L + +GVTH Sbjct: 117 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 177 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVK 236 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DDAY V+++ G ++ V + T+S +G D Sbjct: 237 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 294 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + L+ VPGRFE + + + Sbjct: 295 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 353 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DN Sbjct: 354 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 413 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 414 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDY 473 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 474 QILKD-KTIHFDDREEARAALKEI 496 >gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] Length = 486 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AIV A + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + +REI Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482 >gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus influenzae F3031] gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae F3031] Length = 488 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] Length = 486 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AIV A + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + +REI Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482 >gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] Length = 494 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 251/504 (49%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +++ L ++ +I +V++DSR ++ G +F+A+ G DGH ++ +A+ G Sbjct: 2 KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125 A A++VS I S+ ++ V++TR + + ++ VTGT+G Sbjct: 62 AVAVLVSKPIE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + + TTP + L L + +GVTH Sbjct: 115 KTTTTHMIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVK 234 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DDAY + V+++ G ++ V + T+S +G D Sbjct: 235 SGKGAVINIDDAYGQRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + + L+ VPGRFE + + + Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE IL+ + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DN Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI+ AI+ D++++AGKGHE Sbjct: 412 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ + + D + R L I Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494 >gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 501 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 230/480 (47%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ ++ V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 NA + +K V ++T + L G F V N L A Sbjct: 262 NAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E+ + VDYAHT ++LE L+ Sbjct: 322 ASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA LAD I TDDNPR+ED KI A+I+ G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIMADILKGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] Length = 974 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 238/483 (49%), Gaps = 12/483 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L ++ + ++ + DSR +Q G +FVA+ G+ DG +I A+ +GA A++ Sbjct: 10 LGDLLAVEAEFADVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLAD 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 + N ++ D+ R L ASR Y + + + +AVTGT+GK++V+ Sbjct: 70 RVGVSAEQVVNAHGN--VIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHL 127 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ R G S+ IG TTP I L + L+ G V++EASS Sbjct: 128 LVRLLMRLGESAKTIGTLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASS 187 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ RL +++ FTN+ RDH+DYHQT QAY+ AK +L + Sbjct: 188 HGLDQGRLGCVEISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLRNLVLNADDAGV 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + L + + I V+ + + F L GEF Sbjct: 248 AKMAAVAEHGVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFN 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSL 369 V N L ++ G ++LV++ L+++ V GR + + S +DYAHT ++L Sbjct: 308 VANILAVLAALVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVIDYAHTPDAL 367 Query: 370 EMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + L +R +G++ VFGCGGDRD+GKRP+MGKIA AD +VT DNPRSE P+ I Sbjct: 368 QQALNALRHHCTTGKLWCVFGCGGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVPDVI 427 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 AEI G+ +R EAIR AI + +DV+++AGKGHE V G + D Sbjct: 428 IAEIRGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKGHEDYQEV-RGVRSHFSD 486 Query: 486 CDI 488 ++ Sbjct: 487 HEV 489 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 91/460 (19%), Positives = 167/460 (36%), Gaps = 47/460 (10%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 ++ + VS+D+R +++ +F A+VG K D H F+ QA GA VVS + Sbjct: 531 ELRGEDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDV-- 588 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P + V++TR L +A + ++AVTG+SGK+SV + I G Sbjct: 589 -------DLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEG 641 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + P+ L S + + A+ G + + Sbjct: 642 RVLATSGNLN----------NDIGVPLTLL---RLDDSYQFAVIELGANHVGEIAYTVGL 688 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ A TN+G H++ ++ AK ++ L+PK + DD + A Sbjct: 689 VRPDAALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNAS 748 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + + ++ +S+ G+ L G+ Q+ NAL AA Sbjct: 749 RNVLTFSIENTRANCFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAA 808 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 A G + + L KL GR + D Y +S+ + + + Sbjct: 809 ARAAGASLTSIRDGLNKLQPFKGRM--FPKSLGRWHWIDDTYNANPSSMRAAIDALARLD 866 Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTD-----DNPR------------ 421 +++++ G G++ +G A + D R Sbjct: 867 EPKVLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTNDGQLF 926 Query: 422 -SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNK 458 + PE I ++I +P + KG+R A+ + K Sbjct: 927 VGDGPEAIAKQLIESMPEGVVLVKGSRSAAMEKVFDEAQK 966 >gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] Length = 489 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 219/494 (44%), Positives = 304/494 (61%), Gaps = 11/494 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L LI P LS + + +++DSR ++ +F A+ G K DG F+ Sbjct: 1 MNLSALISALPP---GTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI++ ++A + +L D+ R L+ A+ +G P + AV Sbjct: 58 QEAISK------GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF++QI +G + +G T ++ + LTTP P+ L + L+ L+S Sbjct: 112 TGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELAS 171 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+ L FTNLGRDH+DYH T + Y AKMRLF+ LLP Sbjct: 172 EGVTHAAMEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLP 231 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S++ ++ A AG RVL+VG +G F+ LK+V + +KQ + ++G+ Sbjct: 232 KGAPAVIFADDPWSEQAVEVAERAGARVLTVGRKGGFLSLKRVEHLRHKQIAEVHLDGRI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQ+ NALVAAG+ IA G + + LE L GR E VG+ G Y Sbjct: 292 FEIHVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPAY 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++E +L +R T+GRII+VFGCGGDRD+GKRPIMG IA LAD+ IVTDDN Sbjct: 352 VDYAHKPEAMENVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLADVVIVTDDN 411 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR+EDP +IR+EI+ PG E +R EAIRTA+EML D L+VAGKGHE V + Sbjct: 412 PRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKGHEQGQTVGD-T 470 Query: 480 KKMSVDCDIIREIL 493 D + IR L Sbjct: 471 VLHFSDHEEIRAAL 484 >gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] Length = 499 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 257/503 (51%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ +LI P + +++I+ + DSR + +F+ I G DGH +I Sbjct: 1 MKISELIKDITP-------VETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI +GA A+V+ + + + V+++R+ + AS Y +N+ + Sbjct: 54 DKAIKKGAVAVVIEKDLEV------YSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I + +G ++ +G + I TTP + L + + + Sbjct: 108 GVTGTNGKTTTTYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GVTH +E SSH LD R++G++ G FTN+ +DH+DYH++ Y AK RLF + Sbjct: 168 VDSGVTHAVMEVSSHALDLKRVEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQ- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L A++ DD++S +++K G + + V+ Sbjct: 227 LEPGGWAVVNIDDSHSDKIIKSTTGNIITYGIEGDCDLKANEINLSPTGVSYHVS---GK 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F L G F VYN+L A +GI+ + +EK+ V GRFE V + Sbjct: 284 ESFKIDLNLTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELV-NEGQDFA 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + +E +L+ R G IIVVFGCGGDRD+GKRP+MGKIA L D I+T Sbjct: 343 VVVDYAHTPDGMENVLETAREFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPRSEDP +I +I GI ++++ +R +AI +AI K D++++ GKGHE Sbjct: 403 DNPRSEDPMEIIKDIEKGIQEEVISDTPYVKEPDRRKAIFSAINSARKDDMVIIFGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I + + D ++ RE L Sbjct: 463 TYQIFKD-KTIPFDDREVAREAL 484 >gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] Length = 490 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 241/494 (48%), Gaps = 11/494 (2%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ +L+ + + + + ++++S +Q + F AI GN DGH FI AI +GA Sbjct: 2 KELQDLLTGEKVVNLGKSQV-VKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGA 60 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 + + S+ D I+ +NTRK L+ +++ Y + + ++ +TGT+GK Sbjct: 61 STVFIQ-DTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGK 119 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV++ + Q + +G IG + + TTP P+ + L+ + +G V Sbjct: 120 TSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVV 179 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E SSH Q R+ G FTNL +DH+DYH T + YF AK F ++ AI Sbjct: 180 VAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAI 239 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +K + I +GK +F Sbjct: 240 ASVNIDDPYGKRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFKTK 299 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYN + I G D + + L + GRFE V ++ + +DYAHT Sbjct: 300 LRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRGRFEVV--EAKDFIVVIDYAHT 357 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE ILK++ I R+I VFG GG+RD+ KRP+MGK+A D +DI I+T DNPR EDP Sbjct: 358 PDALENILKSLNQIKQNRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFEDP 417 Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +I +I+ GI I + +R +AI AI+ K D++++AGKGHE I+ + + Sbjct: 418 NQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQIIKD-QVIP 476 Query: 483 SVDCDIIREILGLI 496 D +++ +IL I Sbjct: 477 FDDKEVVNQILKEI 490 >gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 166/495 (33%), Positives = 244/495 (49%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L L+ + ER + E++ DSR AG +FVAIVG+ DG +IPQAIAQG A+ Sbjct: 4 RNLRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + +D + P++ + + LS A R Y + ++ VTGT+GK+++ Sbjct: 64 IAEADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTI 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +S +G + TT S + + L L SQG T ++E Sbjct: 124 TQLLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A +FTNL RDH+DYH + Y AK LF E A Sbjct: 184 VSSHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + ++ +A + + G+++ +V + ++ Sbjct: 242 DDEVGQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVAA +A+G ++ + +L V GR E T + VDYAH Sbjct: 302 RLMGAFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCGRMEVF-TAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA AD +VTDDNPRSE+ Sbjct: 361 TPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQYADRVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I A+I++G+ R EA+ AI DV++VAGKGHE +V N Sbjct: 421 PRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG+I Sbjct: 481 Y-SDRVTVARLLGVI 494 >gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 242/480 (50%), Gaps = 13/480 (2%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 ++ E+ DSR ++ G +FVA+ G++ DG +IPQAIA+GA A++ + + Q S Sbjct: 14 APNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQHLST 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 I PI+ LS A Y + + VTGT+GK++++ + Q G Sbjct: 74 KIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTTLLGH 133 Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G ++ TT S + + +L+ +G ++E SSHGL QHR++ Sbjct: 134 RSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQHRVEA 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYHQ+ + Y AK RLF EL + ADD+ + ++ Sbjct: 194 LAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQIIN--ADDSVGQTWLQEQP 251 Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 N C+ +Q +++ + ++ + L G+F V N L+ Sbjct: 252 NAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALIGQFNVSNLLLV 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +++G D +++ + +L V GR E + +++ VDYAHT ++LE L+ R Sbjct: 312 FATLLSLGYDIEKLMKTVPQLTGVCGRMERLSASNQPT-AIVDYAHTPDALEKALQAARL 370 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G++ VFGCGGDRD+GKRPIM KIA AD IVTDDNPR+E +I +I+ G Sbjct: 371 HCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQIVQDILAGFEH 430 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 R +AI A++ + DV+++AGKGHE I+ +K+ D + +++ + Sbjct: 431 PQHVEVCHARDQAIIQALQKADSDDVVLIAGKGHEDYQIIGT-QKQHFSDQETVQQYFKV 489 >gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 481 Score = 333 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 154/501 (30%), Positives = 247/501 (49%), Gaps = 32/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ P + + E ++ V DSR + G +FVAI G + DGH FI Sbjct: 1 MTLSSILKNVKP-------LNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+AQGA A++ + A + + V++T + A+ YG+ + + + Sbjct: 54 SKAVAQGAVAVLCET------MPAELPQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I A TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH + Q R+ G+ G F+NL RDH+DYH+T + Y NAK F ++ Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKK-AFFDM 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + + ++ + G Sbjct: 227 LPKQAFAITNADDKNGMVMVQNTRATVKTYSTRSMADFKAKILECHFEGMYLEINGAEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L + LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLR-SPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M A+ +D I+ Sbjct: 340 VIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR EDP+ I +++ G + + +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIRE 491 + G K D ++++E Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479 >gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] Length = 488 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 148/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ TGT+GK++++ Sbjct: 64 TELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +L+ G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] Length = 486 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 252/506 (49%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I + E+ I ++ DSR I+ +FVAI G + DGH +I Sbjct: 1 MKLNELLKNVKP-------IQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA AI+V D + N + V +T + + A+ YG ++ Sbjct: 54 DKAIELGACAILVE------DIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + I A TTP PI L L+ + Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGHKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F++ Sbjct: 168 VEEGCEYAFMECSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K++ AI ADD +++ + HL + +V G Sbjct: 227 LGKDAFAITNADDKNGMIMVQNCKATVKTYSTKRAADFKAHLLECHFEGMYLEVNGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L L L V GR E + T+ G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPI-TSLDGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +DYAHT ++LE +L I + G+ II V G GG+RD+GKRP+M A+ +D I Sbjct: 340 AIIDYAHTPDALENVLLAIHEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSDNVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR+EDP+ I +++ G+ + NR EAIR A M +K DV+++AGKGH Sbjct: 400 LTSDNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 ET + NG K D +++REI GL Sbjct: 460 ETYQEI-NGVKHHFDDHEVVREIFGL 484 >gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2846] Length = 488 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] Length = 488 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 241/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI AI GA A+V Sbjct: 4 LTALFNLPELKDDVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G S +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRSAVMGTIGNGLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGHQWLTELPDAIAVSMNADFKVGLHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] Length = 483 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 159/503 (31%), Positives = 244/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I + + +I V+ DSR I+AG +FVA+ G + DGH FI Sbjct: 1 MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA +++ D ++ + V++T + A+ YG + + Sbjct: 54 GKAIELGAISVLCE------DLPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I TTP PI L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G+K FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + ++ G Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFRARILECHFEGMYLEIDGREVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL L LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIH-SPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G+ +I V G GG+RD+GKRP+M + A+ +D I+ Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G K D +++ EI Sbjct: 460 TYQEIK-GVKHHFDDKEVLHEIF 481 >gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] Length = 483 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 159/505 (31%), Positives = 245/505 (48%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I + + +I V+ DSR I+ G +FVA+ G + DGH FI Sbjct: 1 MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA +++ D ++ + V++T + A+ YG + + Sbjct: 54 GKAIELGAISVLCE------DLPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I TTP PI L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDS 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + ++ G Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFRARILECHFEGMYLEIDGREVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G VL L LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIH-SPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G+ +I V G GG+RD+GKRP+M + A+ +D I+ Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 T + G K D +++ EI + Sbjct: 460 TYQEIK-GVKHHFDDKEVLHEIFKV 483 >gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] Length = 517 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 168/508 (33%), Positives = 246/508 (48%), Gaps = 25/508 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +LI L + +R ++ VSSDSR I G IFVA+ G DGHL I Sbjct: 12 KLGELIDG----LGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHID 67 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AI GA AIV + + A +R L V +RK L+ + YG + ++ Sbjct: 68 SAIEAGAVAIVCEA------YPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIG 121 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A + + +G+ + IG I + + TTP P L + Sbjct: 122 VTGTNGKTTTARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMV 181 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G +E SSH L R+ G++ + FTNL +H+D+H+T + Y AK LF L Sbjct: 182 DAGCCAAVMEVSSHALVLDRVHGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSR-L 240 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL------SVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ ADD + + N S+ + Sbjct: 241 TDDGFAVLNADDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAE 300 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + PLPGE+ V N L A + I++G+D A L L + VPGR E + + Sbjct: 301 VTFGAQSATMQVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSA 360 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 R VDYAHT ++L+ L+ +R +T ++ VVFGCGG+RD+ KRP MG+IA +LA Sbjct: 361 DRSRCGVVDYAHTPDALQKALETLRAVTPSGSKLSVVFGCGGNRDRKKRPEMGRIAAELA 420 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D I+T DNPR E+PE I E+ G+ G + +R EAIR A+E L D+L+VAGKG Sbjct: 421 DRVILTSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKG 480 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496 HE V G K D + + + Sbjct: 481 HEEYQEVA-GRKHHFSDRETLAACFAEV 507 >gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] Length = 483 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 245/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +++ P I + +I V+ DSR I+AG +FVAI G + DGH FI Sbjct: 1 MKLNEVLKNITP-------IKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA+A++ + + + + V++T + A+ YG ++ Sbjct: 54 DKAIELGADAVLCE------ELPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I TTP PI L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ + + ++ G Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRSMADFRARILECHFEGMYLEIDGREVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G +L L LH V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDILLVLSTLHSVSGRLEPIH-SPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G+ +I V G GG+RD+GKRP+M + A+ +D I+ Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR EDP++I E++ G + I +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +++ EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLHEIF 481 >gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] Length = 493 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 159/497 (31%), Positives = 250/497 (50%), Gaps = 9/497 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + +++ + ++E+ DSR +Q G FVA++G+ DG FI AI Sbjct: 1 MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++ + + I + P++ +D + LS A +LY +++ VTGT+G Sbjct: 61 QGANAVLAQACEVKAHGTVEIIDDVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q + G + +G T Q TT + + + K LS L++Q T+ Sbjct: 121 KTTITQLIAQWLELLGHKAAVMGTTGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + Y A +L + A Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEEY--ANAKLELFTQHQCERA 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD + NA L I V + + + Sbjct: 239 IINVDDEVGHAWATQLSNAIAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G D +LE +L V GR E T R ++ VDYA Sbjct: 299 APLIGEFNATNLMLAFATLLSLGKDKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP +I +++ G+ I + +R +A+ A+E + +D++++AGKGHE + NGE Sbjct: 418 DPVQIVKDMLSGLSKPAEAIVQHDRFKALSYAVENASPKDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGLIL 497 D + ++LGL L Sbjct: 477 IHYSDRESAMQLLGLSL 493 >gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] Length = 488 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ + LS A Y +N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] Length = 495 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 150/511 (29%), Positives = 235/511 (45%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQ L L+ + + + +DSR +Q G +F+ + G DGH + Sbjct: 1 MQLQQL-----ASLLAVSRVVGDGTVDC--RGIGADSRRVQQGDLFLCLPGFTVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAIA GA A+VV + P LVV + R +++ A ++ + + Sbjct: 54 EQAIASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++ +++I + +G+++ IG + TTP + L + L + Sbjct: 105 GITGTNGKTTITYLIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 + QGV +E SSH L+Q R+ G FTNL +DH+DYH T + Y AK Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 F A++ ADD S + + + Sbjct: 225 GNAFSRDASDSKYAVLNADDPASSYLQAQTAAQVITYGVEKESDV--QASSITIGSKGTS 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +S D D + G+F VYNAL A + GI + LE + V GR E V Sbjct: 283 FHVSTFKGDTDIELRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPVD 342 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT + LE +L+ ++ G++ VFGCGGDRD+ KRP+MGKIA + Sbjct: 343 AGQ-PFAVIVDYAHTPDGLENVLRTVKEFAVGKVWCVFGCGGDRDRTKRPLMGKIAARYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D + +T DNPR+EDP+ I +I G+ + +R AI A+EM + DV++ Sbjct: 402 DHSFITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ D + +E + Sbjct: 462 IAGKGHETYQLIG-KTVHEFDDRIVAKEAIR 491 >gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] Length = 529 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 161/501 (32%), Positives = 245/501 (48%), Gaps = 16/501 (3%) Query: 11 FPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +L+NQ I P ++ + +DSR +QAG +F+ + G++ DG F+ +A+ + Sbjct: 16 LGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTR 75 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA A +++ + + PILV+ + L+ A+ YG ++ VTG Sbjct: 76 GAVAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVTG 135 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQG 181 T+GK++ ++ + Q +G + +G + TT P+ L ++L G Sbjct: 136 TNGKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAG 195 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +E SSH L Q R G A +TNL +DH+D+H + + Y+ AK LF+ + Sbjct: 196 AEVAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPE-YLQ 254 Query: 242 SPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A++ ADD + +++ L + V N Q T+ Sbjct: 255 GRAVVNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTPLG 314 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G F + N L A G+ + +GI L+ L VPGR E V + + Sbjct: 315 TLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLPGQDITV 374 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE +LK +R GR+I VFGCGGDRD+GKRP MG+IA AD +VT D Sbjct: 375 IVDYAHTPDGLENLLKALRPQVQGRLICVFGCGGDRDRGKRPQMGRIAATWADRVVVTSD 434 Query: 419 NPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 NPR+EDP++I +I+ GIPG + +R +AIR AI D +V+AGKGHE I+ Sbjct: 435 NPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDYQILG 494 Query: 477 NGEKKMSVDCDIIREILGLIL 497 EK D + R L L L Sbjct: 495 R-EKIHFDDREEARAALALRL 514 >gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 244/478 (51%), Gaps = 13/478 (2%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + DSR + G +FVA+ G++ D F+PQ+I+ GA A+V+ + + S Sbjct: 13 LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSI 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 ++N P++ + LS A + Y E + + VTGT+GK++V+ + Q G Sbjct: 73 QWQNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGH 132 Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G ++ + TT S + + + L+ +G S+E SSHGL QHR++ Sbjct: 133 KAAVMGTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEA 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K A FTNL RDH+DYH+T + Y AK R F +L P+ + ADD + Sbjct: 193 LKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQI--LNADDPIGAAWLSELP 250 Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 N CR ++++ ++C H + ++ + PL G F V N L+A Sbjct: 251 NGIAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLA 310 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +A+G ++ + +L V GR E + + + VDYAHT ++LE L R Sbjct: 311 TAVLLALGYSFDELIRTVSQLKGVNGRMELIKKAGKPT-VIVDYAHTPDALEKALNAARE 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G++ +FGCGGDRD GKRP+M K A AD+ IVT DNPR+EDP KI A+I+ G Sbjct: 370 HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSR 429 Query: 439 FI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI+ IE + DV+V+AGKGHE I+ + + D ++ L Sbjct: 430 MEDVGVIPDREEAIKFTIENAVENDVIVIAGKGHENYQIIGD-KTLHFSDQEVAEAYL 486 >gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] Length = 499 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 142/482 (29%), Positives = 216/482 (44%), Gaps = 17/482 (3%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +R I+ + DSR + G +F A+ G + DG FI +A+ +GA AIV Sbjct: 18 KGSLDRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK------M 71 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140 A ++ V + R L+ A R Y ++ + VTGT+GK++V ++ Sbjct: 72 PAHPPGKVTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGD 131 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + + TTP + + ++ + G +E SSHG+DQ R+ Sbjct: 132 QRVGLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQRVA 191 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--- 257 G++ A FTNL RDH+DYH+T AYF K RLF + D + Sbjct: 192 GLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAAS 251 Query: 258 -KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 KR H + V + + V + G + PL G + V N L Sbjct: 252 LKREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A +G D + L L VPGR E + + + VDYAHT ++L L + Sbjct: 312 AAIAAAWGLGRDPFVFLARLRAFKGVPGRMERI-DEGQPYNVLVDYAHTDDALRNALGML 370 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R IT GR+ VVFGCGG+RD+ KRP+M K + AD A T DNPR+E +I ++ G+ Sbjct: 371 RAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQIFDDMKAGV 430 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI A++ D L++AGKGHE+ + D ++RE++ Sbjct: 431 LAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKGHESYQEFAD-TVIPFDDRQVVRELI 489 Query: 494 GL 495 G+ Sbjct: 490 GI 491 >gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] Length = 486 Score = 332 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 247/504 (49%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AIV A + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A+ L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + +REI Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482 >gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] Length = 483 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 157/504 (31%), Positives = 241/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ P I + + +I V+ DSR I G +F+A+ G + DGH FI Sbjct: 1 MKLKELLKGIHPTTI-------IGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AI QGA AI+ + ++ +VV +T A+ YG ++ Sbjct: 54 PKAIEQGASAILCET------IPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +E SSH + Q R+ G+ G FTNL RDH+DYH+T Y NAK F + Sbjct: 168 AESGCEYVFMECSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKK-AFFDS 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK S AI ADD +++ + + ++ G Sbjct: 227 LPKSSFAITNADDKNGMYMVQNCKATIKTYSLRNMADFKAKILECHFEGMYLEIDGREVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G + +G +L + L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPIR-SQEGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRP+M + A +D I+ Sbjct: 340 AVVDYAHTPDALANVLNAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR EDP+ I +++ G+ + +R EAIRTA+ M + DV+++AGKGHE Sbjct: 400 TSDNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T + G K D + + + Sbjct: 460 TYQEIK-GVKHHFDDKETVSALFN 482 >gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 496 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 153/511 (29%), Positives = 232/511 (45%), Gaps = 36/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L I ++ DSR +Q G +F+ + G+ DGH + Sbjct: 1 MLLKKLATYFMTSQIRGDGETSC-------TGIAIDSRKVQPGDLFICLPGHTVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA QGA A+VV P L V ++R+ +++ +G ++ Sbjct: 54 RQAEEQGAAALVVER--------WLDDVALPQLKVKDSRQAMAVLGGVFFGAPSSRLKVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ +++I Q G + IG + TTP + L + L + Sbjct: 106 GVTGTNGKTTTTYLIERILQDQGRETGLIGTIQRRFAGQTYPMSGTTPESLELQQYLHDM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 + G + +E SSH L Q R+ G + FTNL +DH+DYH+T Y AK Sbjct: 166 AEGGGEYCVMEVSSHALAQGRVKGTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRL 225 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + E + S A++ DD S K+ Q + + Sbjct: 226 GNTYAENPEERSYAVLNVDDPASAYFAKQTAAEVITYGV--EQDADVRASNISITARGTS 283 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + D + G+F VYNAL A + GI + LE + V GR E V Sbjct: 284 FHVDTFRGSADISLRMVGKFNVYNALAAISATLLEGIPLEQIKASLESVKGVEGRVEAV- 342 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDYAHT + LE +L+ + GR+I VFGCGGDRD+ KRPIMG+IA A Sbjct: 343 DEGQDFAVIVDYAHTPDGLENVLRTVNEFAKGRVICVFGCGGDRDRKKRPIMGQIAAKYA 402 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D +VT DNPR+EDP+ I +I G+ + +R EAI AIEM +++DV++ Sbjct: 403 DYVLVTSDNPRTEDPQAILRDIEQGLVEDGVDQARYELIVDRREAIGKAIEMASREDVVL 462 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ + D + +E + Sbjct: 463 IAGKGHETYQLIGSKVLD-FDDRIVAKEAIR 492 >gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. 2_1_7] Length = 486 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 247/504 (49%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AIV A + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A+ L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + +REI Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482 >gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 489 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 192/479 (40%), Positives = 268/479 (55%), Gaps = 10/479 (2%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P+ +I+ +++DSR I+ G IF A+ G K DG FI A+ GA A++ + Sbjct: 14 LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWP 73 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 T P+++ N R L+L A+ L G P+++ A+TGT+GK+S A F++QI Sbjct: 74 TGVPT----CPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQ 129 Query: 141 GLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG + LTTP P+ LA L+ L+ G HV++EASSHGL+Q Sbjct: 130 GFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLEQG 189 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KE 255 RLDG+ L A FTNL RDH+DYH T +AY AK++LF+ LLP+++ A AD + Sbjct: 190 RLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTLQA 249 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + A R+ VG QG + L A+ Q+++I G L P+PG FQ N Sbjct: 250 IRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQADNV 309 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A L + A +L L L V GR E G YVDYAHT ++L +L + Sbjct: 310 LLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLAS 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R G+++VV G GGDRD GKRP+MG+ A+ ADIAI+TDDNPR+E+P IRAEI G Sbjct: 370 LRPHARGKLVVVLGAGGDRDSGKRPLMGQEAIKGADIAIITDDNPRTENPASIRAEIKAG 429 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 P +E +R +AI A+ ML DVLVVAGKGHE I+ N D ++R + G Sbjct: 430 APQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDDAAVLRTLAG 487 >gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7425] gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425] Length = 501 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 244/500 (48%), Gaps = 14/500 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ E+ + +R+I +S++S Q G +F+ + G + DG F Sbjct: 1 MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI+ +A + ++ V + + A+ LY + ++ Sbjct: 61 ASAISA-----GAVAALVSAAVPLPDPAEACVIPVQDVSRACGAIAAALYNYPTQRLKLV 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + ++G + +G T Q+ TTP + L L+ Sbjct: 116 GVTGTNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASA 175 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH L Q R+ G G FTNL +DH+D+H+ + YF+AK LF Sbjct: 176 VKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPG 235 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 AII DD Y + ++++ A S + + + + N + + Sbjct: 236 -YLSGKAIINQDDPYGQRLIQQLEPAQVWTYSTSDSTADFYTRDLNYLANGVEGILHTPE 294 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 + F PL G+F V N L A G +++G++ + L + VPGR + V + Sbjct: 295 GEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDI 354 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +L+ R R+I VFGCGGDRD+ KRP MG IA LAD +VT Sbjct: 355 SVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKRPKMGGIAAQLADQVVVT 414 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I +I+ G+P I +G+R +AI+TAI D +++AGKGHE Sbjct: 415 SDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHEDYQ 474 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + + L Sbjct: 475 ILGT-EKVHFDDREEAQAAL 493 >gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas gadei ATCC BAA-286] Length = 483 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 148/505 (29%), Positives = 237/505 (46%), Gaps = 34/505 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+DL+ D E+ +I + +DSR AG F+A+ G + DGH + Sbjct: 1 MKLKDLLKGIDIVEIKGN--------ENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I A+ GA+ ++ T R + V ++ A+ YG + Sbjct: 53 INNALDLGAKVVIHQEKVD------TSREGITYIKVKDSADAAGKIATLWYGDPSAKLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ A+ + ++ ++ G + + TTP P+ L + L+ Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAK 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +E SSH + Q R+ G+K G FTN+ +DH+DYH+T Y AK F+ Sbjct: 167 MVDAGCEYAFMEVSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDN 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP+ + A+ ADD +++ + + +VE Sbjct: 227 -LPETAFALTNADDKNGAVMLQNTKAKKYTYSVKTLADFKAKIIEKHFDGT------AVE 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F VYN L G + +G D L L L V GRFE + + Sbjct: 280 FNNKELQVQFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLR-SPENY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L+ I + +GR+I V GCGG+RD+ KRPIM + A+ L+D I Sbjct: 339 TAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I ++ G + + R +AI+TA + + DV+++AGKGH Sbjct: 399 LTSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E V G K D +++R I G Sbjct: 459 EDYQDVK-GVKHHFDDREVVRNIFG 482 >gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] Length = 489 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 206/499 (41%), Positives = 294/499 (58%), Gaps = 15/499 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M++++L +L+ ++ + I ++SDSR + G +FVA+ G K DG Sbjct: 1 MRMRELEAGTMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGAR 60 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A+A+GA A+++ + D + P++ + R+ L+L A+RL+ + P+ I+ Sbjct: 61 FIPDALAKGAAAVLMEPTGAPPDM------DVPLVFSLDVRRSLALAAARLHPRQPQTIV 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK+SVA FV+QI G+ + +G I+ + LT+P P+ L L L Sbjct: 115 AVTGTAGKTSVAEFVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRL 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+++EASSHGLDQ RL+G++L AG FTNLGRDH+DYH T +AYF+AK+RLF EL Sbjct: 175 AGAGITHMALEASSHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRLFTEL 234 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +P +PAI D Y + A G ++G G + +V A Q++ + Sbjct: 235 MPDGAPAIAALDAPYGATTLAFARTRGLPTFAIGATGDL-KVTEVVAEGTSQRIRFADRP 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G FQ NAL+AA L A G+ L L L VPGR E +G + Sbjct: 294 EIL---LPLVGRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLERIGHDPA-RP 349 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 ++VDYAH +LE +L +R T+GR+I +FGCGGDRD+GKRP+MG IA AD+ IVTD Sbjct: 350 VFVDYAHKPEALETVLDTLRAATAGRLIALFGCGGDRDRGKRPLMGAIAAAKADVVIVTD 409 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSEDP IRAEI+ PG +E G R EAIR + M+ DVL+VAGKGHET I+ + Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGAREEAIRAGVAMMGAGDVLLVAGKGHETGQIIGD 469 Query: 478 GEKKMSVDCDIIREILGLI 496 D + LG + Sbjct: 470 -RTYPFSDTAAVLAALGEV 487 >gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] Length = 495 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 189/478 (39%), Positives = 269/478 (56%), Gaps = 4/478 (0%) Query: 15 INQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P+ R +I ++ DSRH++ G++F A+ G+ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S ++V ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E ++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A + G +V+ G+ + L Q + S +G PL G FQ Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAAGL I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRIIVVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIIVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ P E G+R EAI ++ L D L++AGKGHE IV + D + Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHEAGQIVGT-DIFPFDDAEQA 484 >gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] Length = 495 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 149/511 (29%), Positives = 237/511 (46%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQ L L+ + + + +DSR +Q G +F+ + G DGH + Sbjct: 1 MQLQQL-----ASLLAVSRVMGDGTVDC--RGIGADSRRVQPGDLFLCLPGFTVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+A GA A+VV + P LVV + R +++ A ++ + + Sbjct: 54 GQAVASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++ +++I Q +G+++ IG + + TTP + L + L + Sbjct: 105 GITGTNGKTTITYLIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 + QGV +E SSH L+Q R+ G FTNL +DH+DYH T + Y AK Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 F A++ ADD S + + ++ Sbjct: 225 GNAFSRDASNSKYAVLNADDPASSYLQAQTAAQVITYGVEKDSDV--QASRITISAKGTS 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +S + D + G+F VYNAL A + GI + LE + V GR E V Sbjct: 283 FHVSTFKGETDIELRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVD 342 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT + LE +L+ ++ +G++ VFGCGGDRD+ KRP+MGKIA + Sbjct: 343 AGQ-PFAVIVDYAHTPDGLENVLRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D + +T DNPR+EDP I +I G+ + +R AI A+EM + DV++ Sbjct: 402 DHSFITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ D + +E + Sbjct: 462 IAGKGHETYQLIG-KTVHEFDDRIVAKEAIR 491 >gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Heliobacillus mobilis] Length = 528 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 165/512 (32%), Positives = 252/512 (49%), Gaps = 31/512 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M+L ++ I + +++I+ ++ DSR + G++F I G K DG Sbjct: 23 MELSKVLANVEVREIRWTGETDDLQRLMQPKQEISGLAYDSRQVAPGFLFFCIPGQKTDG 82 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F QA+ GA +VV L+ P + V +TR+ L+L A YG E+ Sbjct: 83 HNFAAQAVEGGAAVLVVERFVDLK---------VPQIRVTSTRESLALAAGAFYGHPSEH 133 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKA 173 ++ VTGT+GK++ ++ + + G S IG TTP L K Sbjct: 134 LLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVIGTIGNQLGEKRWPAAHTTPESSDLQKL 193 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + G V +E SSH LDQHR+ G+ +FTNL +DH+DYH T + Y AK +L Sbjct: 194 LAEMRDDGADAVVMEVSSHSLDQHRVLGVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKL 253 Query: 234 FEELLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 F EL KES A+I ADD + ++ + V Sbjct: 254 FRELGQKESKKGIVKRAVINADDPSADYFLQVSSVPAVTYGVEEDAAIRAKDWDVTPQGA 313 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + T+ G D L G F + N+L A + +G++ ++E L+ L VPGRFE Sbjct: 314 --RCTVQYPGGTVDMTLQLTGRFNISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRFE 371 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + VDYAHT + L +L + G+I+ VFGCGGDRD+ KRPIMG + Sbjct: 372 SVDQGQ-PFSVIVDYAHTPDGLVNVLNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVVA 430 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +++DIA+VT DNPR+E+P +I +I+ G+ + + +R +AI A+ M N D++ Sbjct: 431 EMSDIAVVTSDNPRTENPHRIIEDILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLV 490 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++AGKGHE IV E D ++ R++L Sbjct: 491 MIAGKGHENYQIVG-KEVLPFDDREVARQVLR 521 >gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] Length = 489 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 189/479 (39%), Positives = 267/479 (55%), Gaps = 10/479 (2%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P +I+ +++DSR ++ G +F A+ G K DG FI A+ GA A++ + Sbjct: 14 LPALPGNPEISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWP 73 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 T P+++ N R L+L A+ L G P++++A+TGT+GK+S A F++QI Sbjct: 74 ----TDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQ 129 Query: 141 GLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG + LTTP P+ LA L+ L+ G HV++EASSHGL+Q Sbjct: 130 GFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEASSHGLEQG 189 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KE 255 RLDG+ L A FTNL RDH+DYH T +AY AK++LF+ LLP+ + A AD + Sbjct: 190 RLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQA 249 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + A R+ VG G + L A+ Q++TI +G+ L P+PG FQ N Sbjct: 250 ICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNV 309 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A L + +L L L V GR E G YVDYAHT ++L +L + Sbjct: 310 LLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLAS 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R G++IVV G GGDRD GKRP+MG+ A+ ADIAI+TDDNPR+E+P IRA+I G Sbjct: 370 LRPHARGKLIVVLGAGGDRDSGKRPLMGQEAVKGADIAIITDDNPRTENPASIRADIKTG 429 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 P +E +R +AI A+ ML DVLVVAGKGHE I+ N D ++R + G Sbjct: 430 APQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDDAAVLRTLAG 487 >gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] Length = 482 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 162/493 (32%), Positives = 264/493 (53%), Gaps = 18/493 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D ++ L ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ Sbjct: 2 DLSLILKSLEYSFVKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV + + I+ V ++RK L++ AS YG + I+ +TGT+GK+ Sbjct: 62 VIVCEKDLE----DLSCYKDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ I +++G +G + I + ++ TTP + L K + + V + Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ +I Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD+Y ++V+K+A G +V + + + + + + + + Sbjct: 234 NIDDSYGEKVLKKAL--GNKVTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E L + V PGR E V N G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGISLQTIKEALGDISV-PGRCEIVTKNYDLGYDVIVDYAHT 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ DL+DIAI+T DNPR+EDP Sbjct: 351 PDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDNPRTEDP 410 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +++ GI +I R +AI+ A+E+ + DV+VVAGKGHE I+ + Sbjct: 411 SLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQILKD-RTIHF 469 Query: 484 VDCDIIREILGLI 496 + ++I E++ I Sbjct: 470 DEREVIEELIKEI 482 >gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] Length = 493 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 248/495 (50%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q G FVA+VG+ DG FI AI Sbjct: 1 MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++ + + I + P++ +D K LS A +LY ++ VTGT+G Sbjct: 61 KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T ++ TT + + + L+ L+ Q + Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + Y NAK+ LF + + A Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQ--A 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD K+ NA + +V + + + + Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G D + +L +L V GR E +R ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I +++ G+ I + +R +A+ A+E QD++++AGKGHE + NGE Sbjct: 418 DPVFIVKDMLAGLSKPAEAIVQHDRFKALSYALENAAPQDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGL 495 D + ++LGL Sbjct: 477 IHYSDRESAMQLLGL 491 >gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 491 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKANNIRITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] Length = 485 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 247/506 (48%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I+ E +I V+ DSR I G +F+A+ G + DGH FI Sbjct: 1 MKLSELLKNITPIAIHG-------NAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI QGA A++ L+D T+ N + V++T A+ YG ++ Sbjct: 54 GKAIEQGAVAVL------LEDMPNTLNDNVTYVQVESTENTAGKVATLFYGDPSHKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + + G + + I A TTP PI L + L+ + Sbjct: 108 GVTGTNGKTTIATLLYNMFREFGYKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + QHR+ G+ FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 VAAGCEYAFMECSSHAIHQHRIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K + AI ADD +++ + + + ++ G Sbjct: 227 LSKHAFAITNADDKNGMIMVQNTKATIKTYSTKRMADFRAKILECHFEGMYLEIDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G +G + +L L L V GR E + + G Sbjct: 287 VQFIGKFNVS------NLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPI-QSPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + + II V G GG RD+GKRP+M + A+ +D I Sbjct: 340 AIVDYAHTPDALENVLTAIHDVLDNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EAIRTA M + DV++VAGKGH Sbjct: 400 LTSDNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 ET + NG K D ++IREI G+ Sbjct: 460 ETYQEI-NGVKHHFDDHEVIREIFGI 484 >gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 500 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 232/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ GV ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes Clip81459] gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-064] gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 1816] Length = 491 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 486 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 169/503 (33%), Positives = 266/503 (52%), Gaps = 26/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ ++ EL+ + +IN+++ DSR + +FV + G DGH + Sbjct: 1 MNLKSILNGLDYELLQGT-------EDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+ GA+ IV+ ++ D I+ +TRK L+L + YG E + + Sbjct: 54 EKAVLNGAKVIVIQDDVNIDDKE------ITIVKCSDTRKALALMGANYYGNPSEKMKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I + +G IG + TTP + L + + Sbjct: 108 GITGTNGKTTTAFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV + +E SSH L R+ G+K G FTNL RDH+D+H+T + Y++AK +LFE Sbjct: 168 VEKGVEYCVMEVSSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFER- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVE 296 +I DD Y +V+K + + + + ++ V Sbjct: 227 ---SCIKVINVDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVL 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355 ++ +F+ +PGE+ +YNAL A G+C +GI + E +E V PGR E VG Sbjct: 284 DEEEEFILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENALV-PGRCERVGKEYNLP 342 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I +DYAHT + LE ILK + T G++I +FGCGGDRD+ KRP MGKI +D+AD+A++ Sbjct: 343 YEIIIDYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVI 402 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPRSEDP I +I G+ +I NR +AI+ AIE+ K DV+V+AGKGHET Sbjct: 403 TSDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKGHETYQ 462 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ + + + ++++EIL I Sbjct: 463 ILKD-KTIHFDEREVVKEILDNI 484 >gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] Length = 511 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 159/500 (31%), Positives = 241/500 (48%), Gaps = 22/500 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L ++ + E L RK+ ++ +S+ +Q +FVA+ G + DGH FI Q Sbjct: 12 LTRVLQRLERE--GLLQTVVGSATARKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQ 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI +GA A+V + + A + V N+R+ L + A+ + + + + Sbjct: 70 AIERGAVAVVGE---FVPEAFAERFPKASFVQVSNSRRALGILATIFHMNPARRLRLIGI 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ A V + G + IG TTP PI L L ++ Sbjct: 127 TGTNGKTTTAFLVYHMLNAIGQETGLIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTG 186 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + +E SSH L+Q R+ G+ FTNL RDH+DYH + +AY AK +LF+ L Sbjct: 187 VPCKNCVMEVSSHALEQERVAGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDG-LT 245 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+ DD ++ + + +++ Sbjct: 246 FRATALYNIDDPSGPAMVADTQACCISYGQREDAQIRMRIVGHSLEG------LTLNIDG 299 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 FPL G F YN L A G+ A+G+D L+LE L ++ +PGRFE G Sbjct: 300 RFQRFPLVGCFNAYNLLAAYGVGRAMGLDPDLLLEALGRVPQIPGRFERFTFED-GTTAI 358 Query: 360 VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++LE +L+ IR + R+ VFGCGG+RD+GKRP+MG +A LAD IVT Sbjct: 359 VDYAHTPDALENVLRTIREVMPEGARLWCVFGCGGERDRGKRPMMGAVAERLADCVIVTS 418 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSEDP +I +I G+ + + +R AI A ++ DV++VAGKGHE I Sbjct: 419 DNPRSEDPLQIFEDIRQGMRHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKGHEAYQI 478 Query: 475 VTNGEKKMSVDCDIIREILG 494 + EK D +++E Sbjct: 479 IGT-EKIPLDDRQLVQEYFE 497 >gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL N1-067] Length = 491 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 145/508 (28%), Positives = 229/508 (45%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ ++++++ DSR + G +F+ I G DGH F Sbjct: 1 MKLNELMQAIPV-------FTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA A++ + P++ V +T++ +++ A+ YG + ++ Sbjct: 54 KKAEELGAVAVIAEKPIEVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + SG + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 +GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD S + + + Sbjct: 225 GNSYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ F + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV-NA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDY+HT + L +L+ I + R+ VV GCGGDRD+GKRP M KIA+ A Sbjct: 342 GQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPRSE+P I ++I G+P ++ NR +AI+ AI DV+++AGKGH Sbjct: 402 PVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E I+ + E D R + L Sbjct: 462 ENYQIIGD-EVINFDDRVEARLAIEKRL 488 >gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] Length = 491 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ D++++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis NCTC 9343] gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteroides fragilis NCTC 9343] Length = 485 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 151/507 (29%), Positives = 247/507 (48%), Gaps = 32/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ P + ++ +I V DSR +++G +F+A+ G + DGH +I Sbjct: 1 MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+ +GA AI+ + A + + V ++ + A+ YG + + Sbjct: 54 PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G++ G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK S ++ DD + + + + + + Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 + G K D ++++EI L + Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485 >gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae Rd KW20] gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae Rd KW20] gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] Length = 488 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 238/488 (48%), Gaps = 13/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + S + + N P++ LS A Y N ++ VTGT+GK++++ Sbjct: 64 TELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + G + +G + + TT S + + +LS G S+E SS Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSS 183 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +A ++ ++ +++ + +T + PL G Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+ ++ G +L + L V GR E + ++ + VDYAHT ++ Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420 Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G +R +AI+ AIE + DV+++AGKGHE I+ + E D Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479 Query: 486 CDIIREIL 493 +I + L Sbjct: 480 QEIALDFL 487 >gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] Length = 495 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 151/497 (30%), Positives = 240/497 (48%), Gaps = 26/497 (5%) Query: 12 PELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 +L + L++ P ++ I +V++DSR + AG +F+ + G DGH F+ A +G Sbjct: 3 KQLASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125 A A +V D A + ++ V +TR+ + L Y ++ VTGT+G Sbjct: 63 AVAALVE------DVPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + ++ I +++G IG + + + ++ TTP + L K L + G + Sbjct: 117 KTTSTNIIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDY 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKE 241 +E SSH L R+ GI+ TN+ +DH+D+H+T + Y +AK + Sbjct: 177 CVMEVSSHALALKRVAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPN 236 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A+ DD S + +R I+ Q+ + + D Sbjct: 237 KNAVFNMDDPSSAIIRERTKANVL--TYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMD 294 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GEF VYN + G +A ID ++ L+ VPGRF+ V + + VD Sbjct: 295 LELKITGEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLV-EAGQPYTVIVD 353 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + LE +LK R+IT G++ VVFGCGGDRD KRP+MG +AL+LAD +VT DNPR Sbjct: 354 YAHTPDGLENVLKTARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNPR 413 Query: 422 SEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDPE I EI + +R EAI A+ DV+++AGKGHE I+ Sbjct: 414 TEDPELIIDEIFTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQIL 473 Query: 476 TNGEKKMSVDCDIIREI 492 + D +++ E Sbjct: 474 KD-RTIHFDDKEVVMEY 489 >gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 10329] Length = 493 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 248/495 (50%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q G FVA+VG+ DG FI AI Sbjct: 1 MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++ + + I + P++ +D K LS A +LY ++ VTGT+G Sbjct: 61 KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T ++ TT + + + L+ L+ Q + Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + Y NAK+ LF + + A Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQ--A 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD K+ NA + +V + + + + Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G D + +L +L V GR E +R ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I +++ G+ I + +R +A+ A+E QD++++AGKGHE + NGE Sbjct: 418 DPVLIVKDMLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGL 495 D + ++LGL Sbjct: 477 IHYSDRESAMQLLGL 491 >gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Bacteroides fragilis 638R] Length = 485 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 152/507 (29%), Positives = 247/507 (48%), Gaps = 32/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ P + ++ +I V DSR +++G +F+A+ G + DGH +I Sbjct: 1 MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+ +GA AI+ + A + + V ++ + A+ YG + + Sbjct: 54 PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK S ++ DD + + + + + + Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 + G K D ++++EI L + Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485 >gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] Length = 493 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 157/506 (31%), Positives = 239/506 (47%), Gaps = 34/506 (6%) Query: 1 MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L+ + ELIN+ I + DSR ++ G +FV I G DGH Sbjct: 3 MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKKGSLFVCIKGYTVDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 + +A+ GA AIV ++ + P+++V ++++ L+ A Y + + Sbjct: 54 DYAEKAVKSGATAIVAEHPLNITE--------VPVIIVKHSQRALARIADAFYEQPTHKL 105 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK+S ++Q+ +++ + IG + D + TTP + L K Sbjct: 106 NLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + Q V +E SSH L R+ G FTNL +DH+DYH T + Y +AK LF Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225 Query: 235 E-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K AI+ ADD S K K + + Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVTAAEVMTYALERKADVM--AKNIQIMPKGT 283 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 Q + L G+F VYN L A + I G+ ++ +E+L V GRFE V Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VDYAHT +SLE +L + +T G+I V GCGGDRD+ KRP M +IA+ Sbjct: 344 NCDQ-DFPVIVDYAHTPDSLENVLTTCKELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD + T DNPRSEDP I ++ +G+P + NR +AI AI K D +++AGK Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET I+ + + D + + + Sbjct: 463 GHETYQIIDD-QVYDFDDAKVAIDAI 487 >gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 500 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G QD TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 10403S] Length = 491 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 153/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADDA S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] Length = 493 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 247/495 (49%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q G FVA+VG+ DG FI AI Sbjct: 1 MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++ + + I + P++ +D K LS A +LY ++ VTGT+G Sbjct: 61 KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T ++ TT + + + L+ L+ Q + Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + Y NAK+ LF + + A Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCAQ--A 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD K+ NA + +V + + + + Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G D + +L +L V GR E R ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAEHR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I +++ G+ I + +R +A+ A+E QD++++AGKGHE + NGE Sbjct: 418 DPVLIVKDMLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGL 495 D + ++LGL Sbjct: 477 IHYSDRESAMQLLGL 491 >gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria monocytogenes str. Scott A] Length = 494 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 4 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 56 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 107 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 167 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 226 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 227 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 284 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 344 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 345 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 403 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 404 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 463 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 464 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 491 >gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 493 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 143/509 (28%), Positives = 231/509 (45%), Gaps = 36/509 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57 MKL++L + + +I + DSR I +G +F+ + G ED H Sbjct: 1 MKLKELTSLLLIK-------DTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 F+ A+ GA A++V +++ P ++V + R +++ AS Y + Sbjct: 54 QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK++ + +++I G + +G + S + T P L + L Sbjct: 105 KLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + +Q V + +E +S GL R+ G FTNL +DH+DYH T Y + K LF Sbjct: 165 QMMKNQNVDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224 Query: 235 EE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 + A++ ADD + K K + Sbjct: 225 SRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPKGI 282 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + +S + + L G F VYNAL A + + GI + + L L + GR E + Sbjct: 283 RFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEII 342 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 343 -DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSY 401 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++++ Sbjct: 402 SDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLI 461 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKGHET I+ + D + R+ + Sbjct: 462 AGKGHETYQILKDST-IHFDDKEKARQAI 489 >gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis YCH46] gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides fragilis YCH46] Length = 485 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 151/507 (29%), Positives = 246/507 (48%), Gaps = 32/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ P + ++ +I V DSR +++G +F+A+ G + DGH +I Sbjct: 1 MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+ +GA AI+ + + + V ++ + A+ YG + + Sbjct: 54 PAAVEKGATAILCE------ELPVELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK S ++ DD + + + + + + Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 + G K D ++++EI L + Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485 >gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes EGD-e] gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-561] gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e] Length = 491 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADDA S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE +V + E D R + L Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488 >gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 492 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 144/511 (28%), Positives = 230/511 (45%), Gaps = 40/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + +I + DSR I +G +F+ + G DG Sbjct: 1 MKLKELASLLLIK-------DTVGDMNVEITGLEMDSRKITSGDLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P +VV + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIVVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTKDHLDYHGTFHEYKHVKGL 222 Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF + A++ ADD + K K + Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPK 280 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRME 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + ++ + VDYAHT ++LE +L I ++G++I VFGCGGDRD KR IMG IA Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSTGKVITVFGCGGDRDTKKRSIMGGIAG 399 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVL 462 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++ Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDIV 459 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHET I+ G D + R+ + Sbjct: 460 LIAGKGHETYQILK-GSTIYFDDKEKARQAI 489 >gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] Length = 501 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 200/491 (40%), Positives = 278/491 (56%), Gaps = 10/491 (2%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + +L++ + I + + +S+DSR I G +FVAI G DG FI A+ Sbjct: 8 MTSLSLGQLLDGHARILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIADAV 67 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA A+++ A + + + + R LSL A+R Y + P I AVTGT+ Sbjct: 68 ARGASAVLMEPAAPRP----VLPPHVALAFSLDVRHSLSLAAARFYPRQPATIAAVTGTA 123 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVT 183 GK+SVA F++QI +R G + +G ++ LTTP P+ L L L+ +GVT Sbjct: 124 GKTSVAFFLRQIWERLGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVT 183 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H+++EASSHGLDQ RLDG+ AG FTNLGRDH+DYH T AYF AK+RLF +++P ++ Sbjct: 184 HMALEASSHGLDQKRLDGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDAT 243 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A+ ++ + A G ++L +G G+ L + + Sbjct: 244 AVAVTGAPFAANALAWAETRGLKLLPIGE-GQATGLDIFGTTGSGTGQKVMFADGSHAI- 301 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL G FQ+ NAL+AAGL IA G + LE L L VPGR E +G + R ++VDYA Sbjct: 302 VPLVGRFQLDNALLAAGLAIACGAERPAALEALAYLTGVPGRLERIGDDPR-RPVFVDYA 360 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +L +L +R GR++VVFGCGGDRD+GKRP+MG IA AD+ IVTDDNPRSE Sbjct: 361 HKPEALATVLDTLRAAVPGRLMVVFGCGGDRDKGKRPLMGAIAASKADVVIVTDDNPRSE 420 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 DP IRAEI+ G G E G+R EAI+ A+ +L D L+VAGKGHET I+ + Sbjct: 421 DPAAIRAEILEGAHGAREIGDRAEAIKAAVALLQPGDALIVAGKGHETGQIIGD-RTYPF 479 Query: 484 VDCDIIREILG 494 D +R L Sbjct: 480 SDAAEVRAALE 490 >gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 486 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 186/490 (37%), Positives = 268/490 (54%), Gaps = 13/490 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K L + + P + ++ + + DSR ++ G++F A G K +G FI +AIA Sbjct: 4 TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIA- 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 + A ++ LV +N R + A+R Y P + AVTGT+GK Sbjct: 62 -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SVA +Q +G + IG + + +TTP + S L+ ++HV Sbjct: 115 TSVAELCRQFWMIAGHKAASIGTLGVITAENSYSLGMTTPDVVTFLSCCSDLARADISHV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 EASSHGLDQ+R DG K+IAG+FT+ RDH+DYH T + Y AK+RLF+E + + A+ Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ++ADD +K V+ G +++ +G + + I L A Q +T+S++G+ + P Sbjct: 235 VWADDPAAKTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 294 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G +Q+ NALVAAGL +A G D + L L V GR E + G +YVDYAHT Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L ++ +R T GR+ VVFG GGDRD+GKRP MGKIA +LAD IVTDDNPR ED Sbjct: 355 PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482 IR EI+ G P E G R EAI +AI+ K D++++AGKGHE I+ GE Sbjct: 415 ATIRKEILVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474 Query: 483 SVDCDIIREI 492 D + +E Sbjct: 475 FDDVTVAKEA 484 >gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] Length = 485 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 152/505 (30%), Positives = 238/505 (47%), Gaps = 32/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + R I ++ DSR +Q G +FVA+ G + DGH +I Sbjct: 3 MELDILLKSV-------SVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AI +GA A+V + + + V ++ + ++ YG ++ Sbjct: 56 GKAIEKGAVAVVCEA------WPEVQAEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + + G + I A TTP PI L + L + Sbjct: 110 GVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + QHR+ G+K G FTNL RDH+DYH+T + Y +AK F + Sbjct: 170 ADEGCKYAFMEVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ DD +++ + + ++ Sbjct: 229 LPKGAFAVTNVDDRNGMIMVQNTKAVVNTYSLRAVADFKAKVLEESFEGMC------LDV 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + P G F V N L + +G + VL L L V GRFE + G Sbjct: 283 NGKEVSVPFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFE-TIRSREGVT 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L + I R +I V G GG+RD+GKRPIM + A+ +D I+ Sbjct: 342 AIVDYAHTPDALVNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P++I +++ G+ I +R EAIRTA M DV++VAGKGHE Sbjct: 402 TSDNPRFEEPQEIINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 V G K D ++I+ + G+ Sbjct: 462 DYQEVK-GVKHHFDDHEVIKGVFGI 485 >gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] Length = 486 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 158/504 (31%), Positives = 248/504 (49%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DLI ++ M I + SDSR + G +FVA+ G DGH ++ Sbjct: 1 MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 AI +GA AIV + + + +VV ++ + L L SR YG ++ Sbjct: 54 DSAIEKGAVAIVCE------ETPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLMLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + ++ ++ G + + I A TTP P+ L ++ + Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ ADD +++ + + + + + G Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ G F YN L G +++G D VL L L V GRFE + G Sbjct: 283 REVMVH--FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K A+ L+D I+ Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R +AI+TA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K+ D + +REI Sbjct: 460 DYQEIK-GVKQHFDDREKLREIFS 482 >gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes Finland 1988] gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165] gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes J0161] gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900] gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165] gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900] gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] Length = 491 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADDA S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE +V + E D R + L Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488 >gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 491 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 145/508 (28%), Positives = 229/508 (45%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ ++++++ DSR + G +F+ I G DGH F Sbjct: 1 MKLNELMQAIPV-------FTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA A+V + P++ V ++++ +++ A+ YG + ++ Sbjct: 54 KKAEELGAVAVVAEKPVDVT---------IPVIYVRDSKRAMAMLANYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + SG + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 +GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD S + + + Sbjct: 225 GNSYHTSNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGSTFN 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ F + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV-NA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDY+HT + L +L+ I + R+ VV GCGGDRD+GKRP M KIA+ A Sbjct: 342 GQDFPVIVDYSHTPDGLLNVLQTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPRSE+P I ++I G+P ++ NR +AI+ AI DV+++AGKGH Sbjct: 402 PVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E I+ + E D R + L Sbjct: 462 EDYQIIGD-EVIDFDDRVEARLAIEKRL 488 >gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] Length = 495 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 165/481 (34%), Positives = 249/481 (51%), Gaps = 17/481 (3%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + + E I ++ +DSR + G +F A+ G++ DG +IPQA+ A AI+ Sbjct: 15 LTVLGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEAAAILHD----- 69 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 S ++ NTP L+ + R+ L+ A+ YG+ + + +TGT+GKS+VAS I Sbjct: 70 --GSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVASMCATIL 127 Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + SG I I TTP I L L+ + + +EASSH LDQ Sbjct: 128 RHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVMEASSHALDQ 187 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HRL GI+ FTNL RDH+DYH AYF AK +LF E A++ + DA+++ + Sbjct: 188 HRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFRE--YHPKLALLPSSDAHAQAL 245 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G V + G + ++ K++ A + + + + + PG F + NA Sbjct: 246 NSICREQGVAVQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMAPGRFNLDNA 305 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L AA C+ + +D V E L + V GR + + + VD+AHT ++L+ +L + Sbjct: 306 LAAASACLGMDLDLETVAEGLNRFQSVAGRVQ-AIHEGQNFAVLVDFAHTPDALDRLLSS 364 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +T G++ VVFGCGGD+D GKRP MG+ A LA I+TDDNPRSEDP IRA+I+ G Sbjct: 365 LRPLTPGKLWVVFGCGGDKDSGKRPHMGECAGRLAHFPIITDDNPRSEDPAAIRAQIMRG 424 Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E +R +AI A+ D +V+AGKGHE I +G D ++ R+ L Sbjct: 425 CRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKGHEQSQIGAHGAT-PFSDAEVARQAL 483 Query: 494 G 494 Sbjct: 484 R 484 >gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 155/523 (29%), Positives = 245/523 (46%), Gaps = 41/523 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ + + + +I + DSR + G +FV + G K DGH F Sbjct: 95 MTLRKLLNE-----ARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFA 149 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QAI +GA AI+ SL + ++V++T LS A +YG + ++ Sbjct: 150 IQAIEKGAVAIISLMEVSLTEGLKAA------VIVEDTSVILSALAGVIYGHPSKKLSVV 203 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + +Q + + GL +G + TTP + L ++ Sbjct: 204 GITGTNGKTTTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMAS 263 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G +E SSHGL R + I+ FTNL RDH+D+H+T++ Y AK LF + Sbjct: 264 MVQNGTEVCIMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAK 323 Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ E + D + V + + +G + ++ V + +V + Sbjct: 324 MVDPERQRKVVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVR 383 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G VYN L A + IA+G ++ +E + VPGR E + Sbjct: 384 TPQGDVEISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELIDEGQT 443 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +++ +L +R RII V GCGGDRD+GKRPIM KIA D +D+ I Sbjct: 444 -FAVLVDYAHTPDAVARLLDTVRECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCI 502 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-----KGN-----------------RIEAIRTA 452 +T DNPR+E P I +++ G+ +E + + R +AIR A Sbjct: 503 ITSDNPRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAA 562 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + M + D +V+AGKGHET I+ K D + RE L L Sbjct: 563 VAMAEEGDAVVIAGKGHETYQIIGE-IKGHFDDREECREALRL 604 >gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis 3_1_12] gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] Length = 485 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 154/507 (30%), Positives = 244/507 (48%), Gaps = 32/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ P + ++ +I V DSR + +G +F+A+ G + DGH +I Sbjct: 1 MKLKEILTSIHP-------VKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA AI+ + A + + V ++ + A+ YG + + Sbjct: 54 PAAIEKGAIAILCE------ELPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+E Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK S ++ DD + + + + + + Sbjct: 227 LPKSSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFD-AIRSPQGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 + G K D ++++EI L + Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFSLTI 485 >gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] Length = 491 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSAF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ D++++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE ++ + E D R + L Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2] gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2] Length = 514 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 172/515 (33%), Positives = 257/515 (49%), Gaps = 33/515 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + P L + +I + +DSR ++ G +F+A+ G K DGH ++ Sbjct: 1 MKLSYLLKECTPLWRRSLDPASDPGSDPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA A+VV + ++ V +TRK ++ A+R Y E ++ Sbjct: 61 EDALERGAAAVVVQQRVPGKQR---------MVEVADTRKAMASIAARFYDNPSESMCLV 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ I ++G IG + +N +TTP I L + L+ + Sbjct: 112 GITGTNGKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V+HV +E SSH +D HR+ + AG FTNL +DH+DYH+T YF K R F + Sbjct: 172 KAAQVSHVVMEVSSHSIDLHRVRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRI 231 Query: 238 LPKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 LP A + + K R A V + + + + Sbjct: 232 LPSGPKALTAMAVINLDDEKGQALRDAAATKVVTTGRDSRADVCALDLAETITGTTGILK 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++G + F L G F V N L AAG AIGID +++ +E VPGR E V Sbjct: 292 IDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLERV-EPDN 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G ++VDYAHT ++L IL+ ++ RII V GCGGDRD+ KRPIMG+IA L+D+AI Sbjct: 351 GRHVFVDYAHTPDALMSILETLKAQAPKRIITVVGCGGDRDRSKRPIMGQIAATLSDVAI 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----------------GFIEKGNRIEAIRTAIEMLNK 458 +T DNPRSEDP I EI+ GI GF + +R +A+ A+ Sbjct: 411 ITSDNPRSEDPHGIIQEILKGIDTALCPELKPDQLKTGNGFFVEPDRRKALELAVAASTP 470 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D+LV AGKGHET I+ G D +I+ L Sbjct: 471 GDILVAAGKGHETYQILKGGT-IHFDDREILSSAL 504 >gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 500 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 232/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ GV ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] Length = 488 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 159/479 (33%), Positives = 232/479 (48%), Gaps = 13/479 (2%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E++ DSR +AG +FVAI G++ DG +IPQA+ GA A++ + Q Sbjct: 13 AENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQV 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 P++ + LS A YG+ + + + VTGT+GK++ A + Q + G Sbjct: 73 RYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGH 132 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S +G ++ TT S + + +L+ +QG ++E SSHGL QHR++ Sbjct: 133 TSAVMGTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQHRVEA 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + A FTNL RDH+DYH T + Y AK RLF EL + ADD + Sbjct: 193 VHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHII--DADDPVGAAWLAEMP 250 Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 Q K++ V H + + + L G F V N L+ Sbjct: 251 EAVAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNLLLI 310 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A+G D A ++ KL V GR E + + VDYAHT ++LE L+ R Sbjct: 311 MATLLALGYDLAELIGSAHKLTGVCGRMEMLH-APHKPTVIVDYAHTPDALEKALQAARL 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 G++ +FGCGGDRD GKRP+M KIA LAD I TDDNPR+ED +I A+I+ G Sbjct: 370 HCHGKLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDHTQIMADILKGFIH 429 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R EAI TAI+ + DV+++AGKGHE I+ K D ++ R L Sbjct: 430 PQAVQVIHQREEAIATAIQSAVENDVILIAGKGHEDYQIIG-KTKHHFSDQEVARHYLS 487 >gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] Length = 486 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 159/504 (31%), Positives = 255/504 (50%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++++YK E+++ + ++ + DSR IQ+ +FVAI G+ +GH FI Sbjct: 1 MLLKEILYKVALEVVHGS-------TDVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AIA GA+AIV + + S + V +T L+ A+ Y + ++ Sbjct: 54 DKAIALGAKAIVCDT------LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++AS + Q+ +++G + + TTP + + L + Sbjct: 108 GVTGTNGKTTIASLLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSHG+ Q R +G++ + G FTNL DH+DYH T Y + K F + Sbjct: 168 VEAGCQYCFMEVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKK-SFFDN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ DD +M+ Y + + + ++ Sbjct: 227 LPKNAFALSNIDDKNGAVMMQNTKARKLSYALKTYADYKAIIIENQLSG------LLLKI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + L G F YN L G+ I +GI+ VL L +L V GRF+F+ + + Sbjct: 281 NEQEVWVRLIGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSGRFQFI-VSKQNIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +L I I + I + GCGGDRD+ KRPIM IA ++D AI+ Sbjct: 340 AIVDYAHTPDALENVLSTINDIRTRNEQLITIVGCGGDRDKTKRPIMANIASQMSDKAIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+E+PE I AE+ GI ++ +R +AI+TA ++ D++++AGKGHE Sbjct: 400 TSDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T + NG + D I++EIL Sbjct: 460 TYQEI-NGVRHDFDDMQIVKEILE 482 >gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 496 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 157/479 (32%), Positives = 220/479 (45%), Gaps = 15/479 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +++ DSR +QAG +FVA+ G++ DG FIP AI QGA I+ + + + Sbjct: 19 TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSK 78 Query: 88 ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136 + ++ V N K LS A Y + +TGT+GK++ A + Q Sbjct: 79 FAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138 Query: 137 CQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G Q+ TT S I + + L+ G ++E SSHGL Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLA 198 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R + + FTNL RDH+DYH T + Y AK RLF EL K + Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A +F+ V + + + L G F V N Sbjct: 259 TQLPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVNNL 318 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +A+G D +++ L V GR E T + VDYAHT ++LE L+ Sbjct: 319 LTAFAGLLALGFDIQDLIKTSPNLVGVAGRME-CITAPNKPMVIVDYAHTPDALEKALQA 377 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + +FGCGGDRD GKRP+M IA L D I TDDNPR+ED +KI A+I+ G Sbjct: 378 ARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKG 437 Query: 436 IPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 NR EAI+TAIE DV+++AGKGHE I+ EK D + R+ L Sbjct: 438 FSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHENYQIIGT-EKLHFSDQETARKYL 495 >gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas mossii DSM 22836] Length = 483 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 236/505 (46%), Gaps = 34/505 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKLQDL+ D E+ + ++ + V +DSR G +F+A+ G + DGHL+ Sbjct: 1 MKLQDLLKNIDVIEIKGE--------QDINVTGVFTDSRKATPGSVFIALKGVQVDGHLY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I A+ GA+ I+ + + + V ++ A+ YG + Sbjct: 53 IKNALELGAKVILHENKIDTSN------EGITYIKVKDSADAAGKIATHWYGDPSNNLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ A+ + ++ ++ G + + TTP PI L + L Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKN 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +E SSH + Q R+ G+K G FTNL +DH+DYH+T Y AK F + Sbjct: 167 MVDAGCEYAFMEVSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP + A+ DD +++ + + ++ Sbjct: 226 QLPDTAFALTNIDDKNGLVMLQNTKAKTSTYSVHSLADFKARIIEKHFDGTAIEINGKEL 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F +F + YN L G + +G S L L L V GRFE + ++ G Sbjct: 286 QVQFVGVFNV------YNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSSQ-GF 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L+ I + +GR+I V GCGG+RD+ KRPIM + A+ L+D I Sbjct: 339 TAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I ++ G + + R +AI+TA + DV+++AGKGH Sbjct: 399 LTSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E V G K D +I++ I G Sbjct: 459 EDYQDVK-GVKHHFDDKEIVKNIFG 482 >gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] Length = 484 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 240/504 (47%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+++I ELI +R I + DSR + G +FVAI G + DGH + Sbjct: 1 MKLEEIIKAVTVNELIGS--------ADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 I +AI GA IV IR + + +T + A+ YG + Sbjct: 53 IQKAIENGACGIVCEQ------LPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + ++ ++ G + + I A TTP PI L + L Sbjct: 107 IGVTGTNGKTTIATLLYKMFRQFGYKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G++ G FTN+ RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD K +++ + + ++ Sbjct: 226 NLPKSAFALTNLDDKNGKVMVQNTKARIAAYSLRTLCDFKGKVLEDGFDGML------LD 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G S VL L L V GRF+ + + RG Sbjct: 280 INNREVNVRFIGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDALR-SRRGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + GR+I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALVNVLNAIHEVLRGQGRVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G + + +R EAIRTA + QDV+++AGKGH Sbjct: 399 ITSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +I+ I Sbjct: 459 ENYQEIK-GVKHHFDDKEIVNGIF 481 >gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] Length = 482 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 161/473 (34%), Positives = 256/473 (54%), Gaps = 25/473 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ ++ +S+ ++ G++F AI G + DGH FI +A +GA A+VV S Sbjct: 21 KRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVS--------- 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S P+++V++TRK L A +GK E N++ +TGT+GK++ +++I +G + Sbjct: 72 SKVPVIIVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTG 131 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + TTP I + L G +V E SSH LDQ+R+ + Sbjct: 132 LIGTIYYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL +DH+DYH+T + YF +K +LF E K ADD Y K ++K H Sbjct: 192 EAVLFTNLSQDHLDYHKTMEDYFASKAKLFTEYESKVKIIN--ADDTYGKRLLKITHGEI 249 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G + + I+ +GK+++F L G+FQ YN A + Sbjct: 250 ITYGKKGDLK----ILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALW 305 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 GI+ L+ L+ ++V PGRFE V ++ + +DYAHT +++E +L+ R ++ G++ Sbjct: 306 KGIEPDLIQRALKCVNV-PGRFEVVHSD--KFTVIIDYAHTPDAVENVLRTARKLSKGKL 362 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441 I VFG GG+RD+ KRP+MGK A +D+ I+T DNPR E+PEKI +I+ GI I Sbjct: 363 ISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDKVII 422 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R +AI+ AI+M + D++ + GKGHE + G K D +++EILG Sbjct: 423 EADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEIK-GVKYPFSDAQVVKEILG 474 >gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] Length = 483 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 160/499 (32%), Positives = 238/499 (47%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + I + I + +DSR I G +F+A G DG LFI Sbjct: 1 MKLSQLLKPWMKQSI----------MDCLITGLENDSRRIHPGDLFIAYAGAAADGRLFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A++ GA A+ A + + + P + V L A + Y NI Sbjct: 51 DNAVSSGAVAVAYDPADFPLNC--VLPESVPCIPVPELSTQLPNIAKQFYDNPACFLNIT 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A + Q G + IG + + + TTP + L K L Sbjct: 109 GVTGTNGKTTIAYQLAQAHHLLGQKAAYIGTIGQGNVNELRLVDNTTPDSLCLQKLLHQY 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 SQ + V +E SSH L QHR+D ++ FTNL DH+DYH + + Y AK LF Sbjct: 169 KSQDMRQVCMEVSSHALAQHRVDALEFNQAIFTNLTLDHLDYHHSMENYARAKSLLFARE 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDAY K + ++ +Q + K ++ + Sbjct: 229 SLEW--AIINQDDAYHKIMAAAIKPQVKKLTYGIHQDCDVRAKNWSMDIYGTEIEVHSPW 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 G+F +YN+L +A V++ + +L PGR E V + Sbjct: 287 GKHHIKIKSLGQFNIYNSLAIFSSLLAANYIPEQVVDVMAQLKAAPGRMEIVAHSPY--- 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L + + GR+ VVFGCGGDRD+ KRPIMGK+A LAD ++T Sbjct: 344 VLVDYAHTPDALENALMTLNQLKKGRLWVVFGCGGDRDKTKRPIMGKVADKLADEIVITS 403 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+P+ I EI GI I+ NR EAI A++ ++ DV+++AGKGHE+ Sbjct: 404 DNPRTEEPQIIINEISKGIALSTKVIQLVNREEAIAYALDKADENDVILIAGKGHESYQQ 463 Query: 475 VTNGEKKMSVDCDIIREIL 493 + K D D++R ++ Sbjct: 464 IGT-VKHQFSDQDVVRSLI 481 >gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] Length = 481 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 159/490 (32%), Positives = 240/490 (48%), Gaps = 23/490 (4%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ E++ E + + DSR I+ G IFVA+ G+ DGH +I QAI Sbjct: 3 ELLLGLDYEILQ------KGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAI 56 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA+ ++VS + ++V + RK L AS YG + + + T Sbjct: 57 ENGAKGVLVSKKVEPEFP-------VEYILVKDLRKNLGKIASNFYGYPQKKLKIIGITG 109 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 S +IG I + TTP + + K +G+ Sbjct: 110 TNGKTTSTYLLESILGKEKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLE 169 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 ++ +E SSH L R+D ++ SFTNL DH+DYH+ YF AK +LF L Sbjct: 170 YLVMEVSSHALSLGRVDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTM-LKDSKK 228 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + I DD Y + K + I V + Q V +++ G+ F+ Sbjct: 229 SSINIDDIYGDRLYKEFGGYSYSLTKSADLTGEI----VEFHSDGQFVRLNLMGEMFEEK 284 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G + +YN L G+ + +GI ++LE L+ + PGRFE V + VDYA Sbjct: 285 LAILGRYNLYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNCGQ-DYIVVVDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE ILK+I + GR+I VFGCGGDRD KRPIMG+IA L+DIAI+T DNPR+E Sbjct: 344 HTGDALENILKSINELKKGRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTE 403 Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +P I ++ G+ ++ + +R +AI AIE+ K D++++AGKGHET I+ +K Sbjct: 404 NPHLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQILGR-KKI 462 Query: 482 MSVDCDIIRE 491 D +I R Sbjct: 463 HFDDREIARR 472 >gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] Length = 483 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 156/492 (31%), Positives = 241/492 (48%), Gaps = 25/492 (5%) Query: 12 PELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 ELI + + I+ V+ DSR I+ G +FVAI G + DGH +I +AI GA A Sbjct: 4 NELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVA 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ A S+ +VV +T + A+R YG + ++ VTGT+GK++ Sbjct: 64 VLCEKA------PKEPLSDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTT 117 Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 +A+ + + ++ G + + I TTP PI L + L+ + Q +V + Sbjct: 118 IATLLYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFM 177 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH + Q R+ G+ G FTNL RDH+DYH+T + Y NAK F + LPK + AI Sbjct: 178 ECSSHAIAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKK-SFFDHLPKSAFAITN 236 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ADD +++ + + ++ G F F + Sbjct: 237 ADDKNGMVMVQNTKATVKTYSVRTAADFKARIIECHFQGMYLEIDGQEVGVQFIGKFNVS 296 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 N L +G +L + LH V GR + + + +G VDYAHT + Sbjct: 297 ------NLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLH-SPQGFTAVVDYAHTPD 349 Query: 368 SLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L+ +L I + G +I V G GG+RD+GKRP+M K A+ L+D I+T DNPR E+P+ Sbjct: 350 ALKNVLLAIHEVDGKGHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQ 409 Query: 427 KIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I +++ G + + +R EAIRTA + +K DV++VAGKGHET V G K Sbjct: 410 DIINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEVK-GVKH 468 Query: 482 MSVDCDIIREIL 493 D +++ EI Sbjct: 469 HFDDKEVLAEIF 480 >gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] Length = 481 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 153/501 (30%), Positives = 245/501 (48%), Gaps = 32/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ P + + E +I V DSR + +FVAI G + DGH FI Sbjct: 1 MTLSSILKNVKP-------LSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+AQGA A++ + + + V++T + A+ YG+ + + + Sbjct: 54 DKAVAQGATAVLCET------MPTQLPQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G + + I A TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH + Q R+ G+ G F+NL RDH+DYH+T + Y NAK F ++ Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKK-AFFDM 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ AI ADD +++ A + + + ++ + G Sbjct: 227 LPKQAFAITNADDKNGMVMVQNTRAAVKTYSTRSMADFKAKILECHFEGMYLEINGAEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L + +G +L + LH V GR + + ++ G Sbjct: 287 VQFIGKFNVS------NLLAVYATAVMLGKRPEDILLVMSTLHSVNGRLQPL-SSPEGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M A+ +D I+ Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR EDP+ I +++ G + I +R EAIRTA M K DV++VAGKGHE Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIRE 491 + G K D ++++E Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479 >gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae L20] gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 500 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-175] Length = 513 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 236/506 (46%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADD S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HE ++ + E D R + Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIR 485 >gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 500 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 NA + + V ++ + + L G F V N L A Sbjct: 262 NAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 488 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 153/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + E++ DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q Sbjct: 15 DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQHLQVHY 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P++ + LS A Y +++ + VTGT+GK++ A + Q Q G + Sbjct: 75 EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134 Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G ++ TT S + + +L+ ++G ++E SSHGL QHR++ + Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262 A FTNL RDH+DYH T + Y AK RLF EL + ADD + + Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQII--DADDPVGAVWLAEMPHA 252 Query: 263 --AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + Q ++ V H + + + PL G F V N L+ Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + + ++ + KL V GR E + T + + VDYAHT ++LE L+ R Sbjct: 313 TLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKPT-VIVDYAHTPDALEKALQAARLHC 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 G++ +FGCGGDRD GKRP+M KIA LAD I TDDNPR+E+P+KI A+I++G Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AI TAI+ + DV+++AGKGHE I+ K D +++R L Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKYHFSDQEVVRNYLS 487 >gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] Length = 490 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 208/497 (41%), Positives = 283/497 (56%), Gaps = 21/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + + +S DSR + +F A+ G K DG F Sbjct: 1 MRLAELLPG---------ASLTNDLASLDVAALSCDSRKVAPKALFFAVPGTKADGLAFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA +GA AIV SA P++ V + R L+ A+R + + PE I+A+ Sbjct: 52 PQAARKGAVAIVAE------GKSAASIEGAPVIAVADVRAALAEAAARFFPRQPETIVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+FV+Q+ +G ++ +G ++ LTTP PI L + L L++ Sbjct: 106 TGTSGKTSVAAFVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAA 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASSHGL Q RLDG++L AG+FTNL RDH+DYH T Y AK+ LF+ LL Sbjct: 166 SGVTHLALEASSHGLTQRRLDGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLD 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 PA+I AD + EV+ G ++ +VG +G+ + L + + ++ EG+ Sbjct: 226 PGQPAVIDADSDVATEVIAACKARGLKIFTVGSKGESLKLLRATPKAAATGIEVAHEGRI 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G FQ NALVAAGL I G+ + L LE + PGR E VG G IY Sbjct: 286 YKLELPLAGAFQTSNALVAAGLAIVCGVSAERALTALEHIEGAPGRLEKVG-ERNGAPIY 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L +R +GR++VVFGCGGDRD GKRPIMG+IA LAD+ IVTDDN Sbjct: 345 VDYAHKPDALEKVLCALRPAVAGRLLVVFGCGGDRDAGKRPIMGEIAAKLADLVIVTDDN 404 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PRSEDP IRA I+ G G E G+R AIR + LN D L++AGKGHET I+ Sbjct: 405 PRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKGHETGQIIG 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D D R L Sbjct: 465 D-VTLPFSDADCARAAL 480 >gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] Length = 493 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 158/495 (31%), Positives = 251/495 (50%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + +++ + ++E+ DSR +Q G FVA++G+ DG FI AI Sbjct: 1 MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A + + + I + P++ +D + LS A +LY +++ VTGT+G Sbjct: 61 QGANAALAQACDVKTHGTVEIIDDVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q + + +G T + Q TT + + + K LS L++Q T+ Sbjct: 121 KTTITQLIAQWLELLDDKAAVMGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + Y A +L + A Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEEY--ANAKLGLFTQHQCKRA 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD + + NA L I +V + + + + Sbjct: 239 IINVDDEVGHQWASQLSNAIAISLKPNTEFESAIWATEVSYAESGITIKFDGKFGSGELH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++GI+ +LE +L V GR E T R ++ VDYA Sbjct: 299 APLIGEFNATNLMLAFATLLSLGIEKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP +I +++ G+ I + +R +A+ AIE + D++++AGKGHE + NGE Sbjct: 418 DPVQIVKDMLAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGL 495 D + ++LGL Sbjct: 477 IHYSDRESAMQLLGL 491 >gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer RA-YM] gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer RA-GD] Length = 486 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 164/502 (32%), Positives = 247/502 (49%), Gaps = 32/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ + + + +++ + DSR +A ++VAI G+ DGH FI Sbjct: 1 MLLRELLHNIPV-------LETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ +GA+ IV L+D + + V N K L AS YG E + + Sbjct: 54 GSAVEKGAKVIV------LEDLPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV++ + + + G S I + TTP + L + L+ Sbjct: 108 GVTGTNGKTSVSTLLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKA 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +QG + +E SSHG+ Q+R +G+ FTN+ DH+DYH+T Y N K F + Sbjct: 168 VAQGCEYAFMEVSSHGIHQNRTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKK-SFFDN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + AI DD +++ L +V ++ G Sbjct: 227 LPDSAVAITNLDDKNGLVMLQNTKAKKKTYALKTLSDYHGRLLEVDFNGM----LLNFNG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ G+F VYN L+ G+ +G D +L + +L V GRFE + + G Sbjct: 283 KEVWTSL--TGKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEG-GIF 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE IL +I I + R+I VFGCGGDRD KRP MGKIA + +AI+ Sbjct: 340 FVVDYAHTPDALENILDSINEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+EDP I EI G+ + +R EAI+ AI+ +D+++VAGKGHE Sbjct: 400 TSDNPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V NG K D ++I E+ Sbjct: 460 IYQEV-NGVKHHFDDKEVILEL 480 >gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] Length = 500 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 164/509 (32%), Positives = 250/509 (49%), Gaps = 24/509 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++LI + ++ + +I+ ++ DSR I+ G +FVA+ G DGH FI Sbjct: 1 MLLRELIENINIKTLSG-------GLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKH--PEN 116 A+ +GA A++ S+ +L V+++RK LS A+ YG N Sbjct: 54 GDAVRKGAVAVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYGHPFRTMN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175 ++ +TGT+GK++ + ++ I +G + IG + + +TTP + L K L Sbjct: 114 LIGITGTNGKTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILR 173 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF- 234 ++ Q T V +E SSH LDQ R+ FTN+ RDH+DYH + YF AK LF Sbjct: 174 EMADQSATDVIMEVSSHALDQGRVADCPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFE 233 Query: 235 ---EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + A+I DD + K +M V + Sbjct: 234 GLGNRGNQGAACAVINTDDPWGKHLMALTPARTVTYGLGNSCDVTAKDVSVSRKGLHAR- 292 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I + ++ D L G F +YN + AA +A+G+DS +L +E++ VPGR E V Sbjct: 293 LIFEKREEIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELVP- 351 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N R I VDYAHT ++LE L + ITSGRI+ VFGCGGDRD+GKR MG+IA + Sbjct: 352 NDRSLAIIVDYAHTPDALEKALAATKQITSGRILTVFGCGGDRDKGKRYEMGRIAGANSH 411 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 VT DNPRSEDP I +I G+ ++ + +R +AIR A+ D++++AG Sbjct: 412 RIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLIAG 471 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE ++ ++ D + L Sbjct: 472 KGHEDYQLMG-KTRRNFDDRVVAARAASL 499 >gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] Length = 520 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 247/506 (48%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P I+ + +I V+ DSR I+ G +FVA+ G + DGH FI Sbjct: 37 MKLSELLRNVKPIAIHG-------NADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFI 89 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+AQGA A++ L+D A + + V +T + A+ YG ++ Sbjct: 90 GKAVAQGAVAVL------LEDMPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLV 143 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + + I TTP PI L LS + Sbjct: 144 GVTGTNGKTTVATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRM 203 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G++ G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 204 VDAGCEYAFMECSSHAIHQRRISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 262 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ ADD +++ A + + ++ G Sbjct: 263 LPKNAFALTNADDKNGLFMVQNTKAAVKTYSIKRMADFRAKILECHFEGMYLEIEGKEVG 322 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G +L + L V GR E + + G Sbjct: 323 VQFIGKFNVS------NLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 375 Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G +I V G GG RD+GKRP+M + A+ +D I Sbjct: 376 AVVDYAHTPDALANVLAAIHDVLDTKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 435 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EAIRTA M K DV++VAGKGH Sbjct: 436 LTSDNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 495 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + NG K D ++IREI G+ Sbjct: 496 ENYQEI-NGVKHHFDDHEVIREIFGI 520 >gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] Length = 492 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 171/500 (34%), Positives = 257/500 (51%), Gaps = 26/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++ E + + I + + I +++DSR ++ G IF A+ G ++DG +I Sbjct: 3 KLKEI-----VEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIG 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AI++GA A+ + ++ V LS + Y + NI+ Sbjct: 58 DAISKGARAVFFEGEVD------NFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ S + + GL S IG I + + TTP P L + LS + Sbjct: 112 VTGTNGKTTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMV 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++GV +++E SSH L R+DG+ L A FTNL +DH+D+H+T + YF AK+++F+ L Sbjct: 172 NKGVKFLAMEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLE 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +A E KR + A RVL + I+LKK ++ + I+ Sbjct: 232 D-----EGFAVINRDNEWTKRINLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLG 286 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D L G+F +YN L A G+ I +G + + L V GR EF+ + Sbjct: 287 DTVIDTKLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIREGQ-NFNV 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + L +L+ I+ T GR+IVVFGCGGDRD KR MG+I+ LAD+ IVT D Sbjct: 346 IVDYAHTPDGLYNVLQTIKEFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSD 405 Query: 419 NPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 NPR+EDP KI EI GI + NR EAI+ AIE+ + D +++AGKGHE Sbjct: 406 NPRTEDPMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQ 465 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ K D +I R+ + Sbjct: 466 IIGT-IKIPFSDQEIARKYI 484 >gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromobacterium violaceum ATCC 12472] gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Chromobacterium violaceum ATCC 12472] Length = 493 Score = 329 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 158/494 (31%), Positives = 241/494 (48%), Gaps = 22/494 (4%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + P L+ QL + I V +DSR + G +F+A G DG FIP A+ + Sbjct: 8 LPDWDPALLQQLGL--------PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEK 59 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A++ A F+ P L V N R+ + A+ + G ++ +TGT+ Sbjct: 60 GAAAVLWDEA---DGFAWKAEWQAPNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTN 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S++ ++ Q G + IG + TTP P+ + + L+ QG Sbjct: 117 GKTSISHWLAQAFSLLGQKAALIGTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAH 176 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSHGLDQ R++G++ FTNL RDH+DYH + +AY +K +LF K Sbjct: 177 VVTMEVSSHGLDQFRVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLFFWEGLKH-- 234 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A+I ADDA+ +++ RV++ G + + + A Q+T++ D Sbjct: 235 AVINADDAFGRQLAAGIDPKQTRVVTYGLEQGDVRPLALAATLEGLQLTVATPWGTVDVR 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F N L G+ + ++ GR + VG + +DYA Sbjct: 295 TGLVGRFNAANLLACLATLCVNGVSLQDAAAVMARIQPARGRMQSVGGAHEPL-VVIDYA 353 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++LE L + I GR+ VFGCGGDRD GKRP+MG IA AD+A++T DNPR Sbjct: 354 HTPDALEKALATLSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPR 413 Query: 422 SEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 SEDP+ I +++ G+ + +R AI A+ DV++VAGKGHE + G Sbjct: 414 SEDPQAIIRDVLAGMDAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEEYQDIA-GV 472 Query: 480 KKMSVDCDIIREIL 493 K+ D + E L Sbjct: 473 KRPFSDFRVAEEAL 486 >gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] Length = 490 Score = 329 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 159/480 (33%), Positives = 228/480 (47%), Gaps = 23/480 (4%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 18 DFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV---- 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + P+ +V N+++ LS+ + YG+ + + + +TGT+GK+S + V +I +++G Sbjct: 74 -----SVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAG 128 Query: 142 LSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG + TTP + L K ++ V +E SSH L R+ Sbjct: 129 KRTGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRVH 188 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255 G FTNL +DH+DYH+T Y AK LF K AI+ ADD S Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAY 248 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K K + + L G+F VYN Sbjct: 249 YEKVTAAHISTYGIKNDADVM--AKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNV 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A CIA GI V E +E+LH V GRFE V ++ + VDYAHT +SLE +LK Sbjct: 307 LAAVATCIAAGIPFETVAEAVEELHGVRGRFELV-NKNQEFPVIVDYAHTPDSLENVLKT 365 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +T G++ VV GCGGDRD+ KRP M KIA+ LAD I T DNPRSEDP I ++ G Sbjct: 366 CKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAILRDMEAG 425 Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + NR +AI AI K DV+++AGKGHET + E D ++ + Sbjct: 426 VENEYYHSIANREQAIFFAIANARKGDVVLIAGKGHETYQQIGA-ETFDFDDAEVAARAI 484 >gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 487 Score = 329 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 161/497 (32%), Positives = 252/497 (50%), Gaps = 26/497 (5%) Query: 10 DFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + L+N L+I + ++ I V DSR ++ G +FVAI G + +GH +I QA GA Sbjct: 3 NLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 AIV + + +VV N+ L+L A+ YG E ++ VTGT+GK Sbjct: 63 TAIVCEQ------LPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++A+ + Q+ +++G + + + + TTP P+ L L + QGV + Sbjct: 117 TTIATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYC 176 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSHG+DQHR +G+ G FTNL RDH+DYH+T AY + K R F+ LP + A+ Sbjct: 177 FMEVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPSTAFAL 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DD +++ + H+ + + + + Sbjct: 236 VNIDDKNGAFMLQNTKAQKKTYALKTHADYKAHIIESRFDG------LLLRINQHEVWTK 289 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L GEF YN L G +G+D L + + V GRF+ ++ G VDYAHT Sbjct: 290 LIGEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQ-YAVSATGVITIVDYAHT 348 Query: 366 SNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+D I+T DNPR+E Sbjct: 349 PDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNE 408 Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +PE I +E+ G+ +R +AI++ + K D++++AGKGHET + G Sbjct: 409 EPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKGHETYQEIK-G 467 Query: 479 EKKMSVDCDIIREILGL 495 + D +I+RE L L Sbjct: 468 VRHHFDDFEIVREYLEL 484 >gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] Length = 493 Score = 329 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 154/505 (30%), Positives = 247/505 (48%), Gaps = 25/505 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + I+ ++ DSR + G +FVAI G+ DG FI Sbjct: 2 MQLSELLLSW-----------CELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118 AI QGA A++ + + + +N ++ +D+ LS A Y K ++ Sbjct: 51 SSAIEQGAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++++ + Q + +G T S + TT SPI + + L+ L Sbjct: 111 GITGTNGKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++E SSHGL Q R++ + A FTNL RDH+DYH + Y AK LF Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSH 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293 PK S ADD + +K +A L+ + V Q+++ Sbjct: 231 RPKHSIIN--ADDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSV 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S + + F PL G F N LVA +++G D + + +L+ V GR E T Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELF-TAD 347 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 ++ VDYAHT ++L+ L+ +R G++ +FGCGGDRD GKRP+M IA AD+ Sbjct: 348 NKAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I++DDNPRSE+P I +++ G+ +R EA + A+ N+ D++++AGKGHE Sbjct: 408 ILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 ++ + D + + +LGL Sbjct: 468 DYQVLADKTV-YYSDRETAQTLLGL 491 >gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-003] Length = 491 Score = 329 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGAPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADDA S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKG Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497 HE +V + E D R + L Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488 >gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] Length = 485 Score = 329 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 151/507 (29%), Positives = 246/507 (48%), Gaps = 32/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ P + ++ +I V DSR +++G +F+A+ G + DGH +I Sbjct: 1 MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+ +GA AI+ + A + + V ++ + A+ YG + + Sbjct: 54 PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK S ++ DD + + + + + + Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K D ++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 + G K D ++++EI L + Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485 >gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] Length = 483 Score = 329 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 204/498 (40%), Positives = 278/498 (55%), Gaps = 25/498 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ ++ +I +S+DSR I+ G+ F AI G+ DG ++ Sbjct: 1 MRLTELLARN---------DLDPALAGIEIAGLSADSRAIREGFAFFAIPGHAGDGLSYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+GA +V + P++VVD+ R L+ A+R + + P I AV Sbjct: 52 DDARARGARVVVAQRQSEC---------SLPLVVVDDVRAELAHAAARFHPRQPRVIAAV 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGTSGK+SV + ++QI G + +G + S LTTP P+ L + L L+ Sbjct: 103 TGTSGKTSVVASLRQIWTAMGHEAASLGTVGVVDSKGAHYGALTTPGPVELHRILDDLAG 162 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASS G+DQ RLDG++L FTN RDH+D+H+ + YF AKMRLF+ L Sbjct: 163 RGVTHLAMEASSLGIDQRRLDGVRLSVAGFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQ 222 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I AD + V G V VG +G+ I +++ A + + G D Sbjct: 223 PGRTAVIDADSDVAPRVAAVCEKRGLNVFGVGAKGEAIAVREARAHALATSLKLRHAGVD 282 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G FQ NALVAAGL IA G D A V L +L PGR EF+G G ++ Sbjct: 283 YSVELPLAGAFQTSNALVAAGLAIAAGDDPARVFSALNELKGAPGRLEFIG-ERDGAPVF 341 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L +R +T R+IVVFGCGGDRD+GKRP+MG+IA AD+AIVTDDN Sbjct: 342 VDYAHKPDALEKVLATLRPLTKRRLIVVFGCGGDRDRGKRPLMGEIAARAADVAIVTDDN 401 Query: 420 PRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PRSED IRA II G IE +R EAI A+ L DVLVVAGKGHET IV Sbjct: 402 PRSEDANAIRAAIIEGARGGGAEIIEIADRGEAISKAVADLRAGDVLVVAGKGHETGQIV 461 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + I + L Sbjct: 462 GD-RVLPFSDHEAIAQAL 478 >gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 478 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 204/470 (43%), Positives = 271/470 (57%), Gaps = 7/470 (1%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I +++DSR ++ G++F A+ G K DG FIP AIA GA A++V + + Sbjct: 9 DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLV-----PHGSTVEV 63 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ N R+ +L AS +G P + AVTGT+GK+S A F +QI R G S Sbjct: 64 PPQVALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAA 123 Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I+ + LTTP P L L+ L+ G+TH +EASSHGLDQHRLDG+KL+ Sbjct: 124 IGTLGIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLM 183 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A +FTNL RDH+DYH + QAY AK+RLF E+LP+ + A+I AD + ++ G Sbjct: 184 AAAFTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI 243 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 VL G + + L + Q++ + + G+ PL G FQ NAL A GL +A Sbjct: 244 TVLGYGRAARDLRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALAC 303 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G D LE L L V GR + V + G +YVDYAHT ++LE +LK +R S R++ Sbjct: 304 GADPVTALEALGSLEGVHGRLQKVAARAHGAPVYVDYAHTPDALETVLKALRPHASRRLV 363 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 VVFGCGGDRD GKRP+MG I LAD IVTDDNPRSEDP IRA + P IE G+R Sbjct: 364 VVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIGDR 423 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +AIR A+ L K DVLV+AGKGHE IV D + R + L Sbjct: 424 RDAIRAAVSGLQKGDVLVIAGKGHEKGQIVGT-TVLAFDDAEEARTAVDL 472 >gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] Length = 489 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 150/490 (30%), Positives = 236/490 (48%), Gaps = 13/490 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L ++ +Q E + ++ D+R +Q G +F+A+ G+ DG +F+ QA +GA AI+ Sbjct: 5 LKQLMAGLNIQAPEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAIL- 63 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131 + D + P + V + +S A Y + + + VTGT+GKS+ Sbjct: 64 ---FDNSDGFVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQ 120 Query: 132 FVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + + G +G TT S I + + L+ ++ V ++E S Sbjct: 121 LIANWTELFGQRGGVLGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS 180 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL QHR+ ++ A FTNL RDH+DYH T QAY AK +F++ P+ Sbjct: 181 SHGLVQHRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCILNADDAT 240 Query: 251 AYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 A + M +A G + G F++ V ++I D PL G+ Sbjct: 241 AREWLLQMPQAVVYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLLGK 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N L A + + + D + + +L V GR E G + + VDYAHT + L Sbjct: 301 FNVSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFGNQDQPL-VVVDYAHTPDGL 359 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L+ R G + +FGCGGDRD+GKRP M IA AD I+TDDNPR+EDP I Sbjct: 360 EKALQAARQHCHGHLFCLFGCGGDRDRGKRPQMAAIAEQWADTLILTDDNPRTEDPAAII 419 Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 A++ G+ + +R +AI+ A+ D++++AGKGHE I+ EK D Sbjct: 420 ADMCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKGHEDYQIIG-KEKHHYSDR 478 Query: 487 DIIREILGLI 496 + + ++LG++ Sbjct: 479 ETVMQLLGVM 488 >gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 494 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 157/498 (31%), Positives = 249/498 (50%), Gaps = 10/498 (2%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++L L +S+ + I + DSR I+ G FVAI G+ DG FI A Sbjct: 3 KELTLTHL--LAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I QGA AI+ + + ++ + + + LS ASRL ++AVTGT Sbjct: 61 IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+++ + Q + SG + +G T + TT + + + + LS L QG Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++E SSHGL Q+R+ + G F+NL RDH+DYH T + Y A+ +L + + Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEY--ARAKLSLFTVHDCA 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I DD ++ N LS GK + +V ++ S + + F Sbjct: 239 KAVINIDDTVGASWVELLDNCIPVSLSPIQTGKGVFATQVQYSEAGITLSFSGQYGEGRF 298 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL GEF N +VA +++GID +++E +L V GR E ++ VDY Sbjct: 299 TVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLGRMELFH-AQGKAKVVVDY 357 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L ++ +GR+ +FGCGGDRD GKRP+M I LAD+ I+TDDNPRS Sbjct: 358 AHTPDALEKALLALKVHCNGRLWAIFGCGGDRDTGKRPMMASIGEKLADVVILTDDNPRS 417 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E P I +++ G+ I + +R A+ A++ + D++++AGKGHE ++ N Sbjct: 418 ESPSAIVKDMLAGMASPENAIVEHDRYNALVHALKHSSGDDIILIAGKGHEDYQVLANET 477 Query: 480 KKMSVDCDIIREILGLIL 497 D + + +L L L Sbjct: 478 VHY-SDRESAQRLLELTL 494 >gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] Length = 494 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 235/473 (49%), Gaps = 9/473 (1%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A+V ++ Sbjct: 25 IAVEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWL 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P++ V LS A R+Y ++ VTGT+GK+++ + Q G S + Sbjct: 85 NAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVM 144 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + TT S I + + LS L+ + + ++E SSHGL Q R+ + Sbjct: 145 GTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAHNAGC 265 G FTNL RDH+DYH T + A + K A+I DD K + ++ Sbjct: 205 GVFTNLSRDHLDYHGTMEE--YALAKKRLFTQHKCKHAVINVDDEVGKAWMADLSNAIAV 262 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +L + + + V +++ D PL G+F N LVA +++ Sbjct: 263 SLLPLSDYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFATLLSL 322 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GID +++ +L V GR E ++ VDYAHT ++LE L +R SG++ Sbjct: 323 GIDKQTLVDTASQLQPVIGRMELF-QVPSKAKVVVDYAHTPDALEKALAALRVHCSGKLW 381 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ + Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R +A++ A+E D++++AGKGHE ++ + D + ++LG+ Sbjct: 442 HDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHY-SDRESALQLLGI 493 >gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Chlorobium tepidum TLS] gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium tepidum TLS] Length = 508 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 161/480 (33%), Positives = 236/480 (49%), Gaps = 21/480 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR + G +FVA+ G DGH FI AI GA A+ + A + Sbjct: 36 ITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGAVAVACE------ELPAAYSDS 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 LVV + RK L+ + YG + + + VTGT+GK++ A V + SG+++ I Sbjct: 90 VTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYI 149 Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + TTP P L + G +E SSH L R+ G+ A Sbjct: 150 GTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRA 209 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +H+D+H+T + Y AK LF++ L E A+I ADD ++ + R Sbjct: 210 AVFTNLTPEHLDFHETMEEYAEAKRLLFDQ-LNAEGFAVINADDPRAEFMAARLAPERVF 268 Query: 267 VLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 S G + H + + ++ +G+ PLPG + V N L A Sbjct: 269 CCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAFT 328 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + +GID A L L + GR E + + R VDYAHT ++L+ L+ +R +T Sbjct: 329 VGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAVVDYAHTPDALQKALEALRAVT 388 Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 ++ VVFGCGG+RD+ KRP MG+IA +LAD I+T DNPR E+PE I E+ G+ G Sbjct: 389 PADAKLAVVFGCGGNRDRQKRPEMGRIAAELADRVILTSDNPRDENPEAILDEVEAGMAG 448 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R EAIR A+E L D+L+VAGKGHE + G K D + + + Sbjct: 449 RVHLRIADRAEAIRRAVEQLGAGDILLVAGKGHEAYQEI-RGVKHHFSDRECLEACFAQM 507 >gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] Length = 484 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 152/504 (30%), Positives = 245/504 (48%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+++I + E+ + +++I + DSR ++AG +FVA+ G + DGH + Sbjct: 1 MKLENIIESVNVCEIKGNV--------DKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 I +AI +GA AIV + T+ + + V +T + A+ YG + Sbjct: 53 IEKAIEKGASAIVCET------LPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + + I A TTP PI L + L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTN+ RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ ADD +++ + + ++ Sbjct: 226 NLPKTAFALTNADDKNGSVMVQNTKAKIATYSLRTLCEFKGKVLEDGFEGML------MD 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G VL L L V GRF+ + + +G Sbjct: 280 INNREVNVQFIGRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALR-SKKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + GR+I V G GG+RD+GKRPIM + A +D I Sbjct: 339 TAIVDYAHTPDALVNVLNAIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G + + +R EAIRTA + DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++ EI Sbjct: 459 ENYQEIK-GVKHHFDDKEVLAEIF 481 >gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 494 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 147/477 (30%), Positives = 233/477 (48%), Gaps = 9/477 (1%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A+V ++ S Sbjct: 21 ELASIAVEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGS 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P++ V LS A R+Y ++ VTGT+GK+++ + Q G Sbjct: 81 VEWLDAVPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G T + TT S I + + LS L+ + ++E SS GL Q R+ + Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKAL 200 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAH 261 G FTNL RDH+DYH T + A + K A+I DD K ++ ++ Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEE--YALAKKSLFTQHKCKHAVINVDDEVGKAWMVDLSN 258 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +L + + + V ++ PL G+F N LVA Sbjct: 259 AVAVSLLPLSGYQQSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFAT 318 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++GID +++ +L V GR E ++ VDYAHT ++LE L +R S Sbjct: 319 LLSLGIDKQTLIDTAPQLQPVIGRMELF-QVPNKAKVVVDYAHTPDALEKALAALRVHCS 377 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 G++ +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ Sbjct: 378 GKLWAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPEA 437 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A++ A+E D++++AGKGHE ++ + D + ++LG+ Sbjct: 438 AFVEHDRYQAVKFALEQAGNNDIILLAGKGHEDYQVLKDKTIHY-SDRESALQLLGI 493 >gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] Length = 489 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 178/477 (37%), Positives = 268/477 (56%), Gaps = 3/477 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + + R+ ++ ++ DSR ++ G +F A+ G+ G FI A+ QGA AI+ Sbjct: 3 LSLLGLRGDKGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTD 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + + ++ ++V ++ R L+ A+ + PE ++AVTGTSGK+SVASF + Sbjct: 63 RKGAEIAAAELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTR 122 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI Q G + +G + TTP PI L + L+ ++ GVTH ++EASSHGL Sbjct: 123 QIWQALGHKAISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L AG+FTN +DH+DYH+ YF AK LF+ +L + + A+I DD + Sbjct: 183 DQRRLDGVRLKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGR 242 Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + A G ++ ++G + + Q + G+ L G FQ Sbjct: 243 QMAQIAGERGLKLTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAE 302 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L AAGL IA G ++ V+E L L V GR E G ++VDY+H +L L Sbjct: 303 NVLAAAGLAIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASAL 362 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +++R GRI+VVFG GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRAE++ Sbjct: 363 QSLRPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVM 422 Query: 434 HGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G P IE G+R EAI ++ L D L++AGKGHET I+ + + D + Sbjct: 423 AGAGPDAIEVGDRAEAILRGVDALQPGDALLIAGKGHETGQIIGS-DVYPFDDAEQA 478 >gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] Length = 493 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 155/495 (31%), Positives = 247/495 (49%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + +++ + ++E+ DSR +Q G FVA++G DG FI AI Sbjct: 1 MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A + + + I + P++ +D + LS A ++Y +++ VTGT+G Sbjct: 61 QGANAALAQACDVKTHGTVEIIDDVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q + + +G T + Q TT + + + K LS L++Q T+ Sbjct: 121 KTTITQLIAQWLELLDHKAAVMGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + A +L + A Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLGLFTQHQCERA 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD + + NA L I +V + + + Sbjct: 239 IINVDDEVGHQWASQLSNAIAVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G + +LE +L V GR E T R ++ VDYA Sbjct: 299 APLIGEFNATNLMLAFATLLSLGKEKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP +I +++ G+ I + +R +A+ AIE + D++++AGKGHE + NGE Sbjct: 418 DPVQIVKDMLAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKGHEDYQ-IRNGET 476 Query: 481 KMSVDCDIIREILGL 495 D + ++LGL Sbjct: 477 IHYSDRESAMQLLGL 491 >gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 493 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 235/504 (46%), Gaps = 27/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+ L+ + +I + DSR I +G FV I G DGH ++ Sbjct: 1 MELKKLLE------CLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ GA AI S PI+ V++T + L++ A + Y ++ + Sbjct: 55 DQAVKNGASAIFTSK-------PLMKEYGVPIIQVEDTNRALAMLAVKYYDYPTKHFPLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V + +I + + IG I TTP+ + L K + Sbjct: 108 GVTGTNGKTTVTYLLDKIFEYHQKKAGVIGTIQVKIGEETFPIVNTTPNALELQKTFHVM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 + V +E SSH LD R+ G FTNL +DH+DYHQ Q Y A +L Sbjct: 168 REKDVKQGIMEVSSHALDMGRVYGCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ I DD S ++KR+ S + + K + + + + Sbjct: 228 GNGYDSEKEKYAIINDDDSSSHLLKRSTAQHVITYSCKKEATIM-AKDIELTASGIRFKL 286 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + L G F VYN L A+ IA + ++ + LE + V GRFE + Sbjct: 287 HSPLGNITIQSRLMGMFNVYNMLAASAAAIASKVPLNVIQQALESIEGVNGRFEPI-VEG 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VD+AHT +SLE +L+ I+ + VV GCGGDRD+ KRP+M ++AL+ AD A Sbjct: 346 QNYSVIVDFAHTPDSLENVLQTIKDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHA 405 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPR+EDP+ I ++ + + +R E I AI+ K D++++AGKGH Sbjct: 406 VFTSDNPRTEDPQAILDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKGH 465 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET I+ + K D D+ R + Sbjct: 466 ETYQIIGH-TKYDFDDRDVARNAI 488 >gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] Length = 485 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 162/504 (32%), Positives = 247/504 (49%), Gaps = 33/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ IN + I ++ DSR I+AG +FVA+ G + DGH FI Sbjct: 1 MKLTDLLKGVKTLNING-------NADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA+A++V D ++ + + V +T + A+ YG + ++ Sbjct: 54 NKAIELGAKAVLVE------DMPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + ++ G I + I A+ TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + QHR+ G+ G FTNL RDH+DYH+T + Y NAK F+ Sbjct: 168 VAAGCEYAFMECSSHAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDS- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K + AI ADD +++ + + +V G Sbjct: 227 LSKNAFAITNADDKNGMIMVQNCKANIKTYSMQRMADFRAKIIECHFEGMYLEVDGKEVG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G +L L L V GR + V + G Sbjct: 287 VQFIGKFNVS------NLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVH-SPEGFT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G++I V G GG+RD+GKRP+M + A+ +D I Sbjct: 340 AIVDYAHTPDALENVLGAIHDVLEGKNGKVITVCGAGGNRDKGKRPLMAQEAVKQSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I +++ G+ + +R EA+RTA M K DV++VAGKGH Sbjct: 400 LTSDNPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAMMAKKGDVILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++REI Sbjct: 460 EDYQDIQ-GVKHHFDDHEVLREIF 482 >gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 500 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] Length = 483 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 206/478 (43%), Positives = 276/478 (57%), Gaps = 17/478 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +I V++DSR ++AG +F A+ G K DG A + + + Sbjct: 14 ADPEITGVTADSRKVRAGTLFAALPGTKVDGAS---------FAAAAIQAGAAAVIADRD 64 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P +V + R+ +L A+ +G+ P+ +AVTGT+GK+SVA+F +Q+ R+G +S Sbjct: 65 LGLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSA 124 Query: 146 QIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G LTTP +A+ L+ ++ GV+H ++EASSHG+DQ R Sbjct: 125 SMGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRR 184 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LDG+KL A F NL +DH+DYH T +AY AK+RLFE LLP+ A++ AD Sbjct: 185 LDGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAA 244 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A AG V+ VG G + L K + Q + I EG+ D PL G FQ NALVA Sbjct: 245 AAVIAGQWVMPVGETGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVA 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AGLC A G+ V LE L PGR + VG +RGG YVDYAHT + LE +LK +R Sbjct: 305 AGLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYVDYAHTPDGLETVLKALRP 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 GR+IVVFG GGDRD+GKRP+MGK+A +LAD+AIVTDDNPRSE P IRAE++ G PG Sbjct: 365 HVRGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAEVLAGCPG 424 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 E G+R EAIR A+ ML D+LVVAGKGHE IV G D + L L+ Sbjct: 425 AAEIGDRREAIREAVAMLRDGDILVVAGKGHEQGQIVG-GVTHPFDDVAETAQALELV 481 >gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51] gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 496 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 169/503 (33%), Positives = 246/503 (48%), Gaps = 19/503 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+++ + K E+ + + I ++ I + DSR +Q G ++ + G DGH F Sbjct: 2 MRVKSV-RKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 QAIAQGA A++V + + P L V R+ + A+ LY + Sbjct: 61 AAQAIAQGAAALLVER---------ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEV 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ V+ I G IG I+ TTP I L K L Sbjct: 112 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 171 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV +E SSH L R+ G + AG F+NL +DH+DYH+T + Y AK +LF Sbjct: 172 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 231 Query: 237 LL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L KE + D + E + R A V + + + + T+ Sbjct: 232 LTGVKEPKVGVVNGDDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRF 291 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G + + PG F VYNAL A + G V E L + VPGRFE V Sbjct: 292 KGGESQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQ-P 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +I VDYAHT + LE + + + T GR+I VFGCGGDRD+GKRP MG IA +L+D IV Sbjct: 351 FQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIV 410 Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPR+EDP +I +I+ GI + NR EAI A + + D +++AGKGHE Sbjct: 411 TSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHEDYQ 470 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ + D ++ RE L + Sbjct: 471 IIG-KDVFPFDDREVAREALRRL 492 >gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 487 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 243/504 (48%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ + + + I + DSR ++ G +F+ I G DGH F Sbjct: 1 MDLRELLT-------HLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ +GA AI+ ++ + +T++ +++ A Y + + + + Sbjct: 54 QMAVEKGAVAILAEKPVDVEVPVVRV---------KSTKRAMAVLADAFYNQPTQKMHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++ ++ I + + IG I + D + TTP + L K + Sbjct: 105 GVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + V +E SSH LD R+ G F+NL +DH+DYH T + Y AK Sbjct: 165 VEENVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ ADDA ++E +K + I + ++ Sbjct: 225 GNAYNHNRPKFAVLNADDAATEEYIKNTAATVITYGI--DRDSDIRATNIQITNSGTTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + L G+F VYN L A C+ GI ++++E ++ L V GRFE V Sbjct: 283 LTTPTETVRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVV-DA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK ++ I V+ GCGGDRD+ KRPIM +IA + + Sbjct: 342 EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQ 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPRSEDP I ++ G+ ++ +R EAIR A+E + DV+V+AGKGHE Sbjct: 402 AILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T I+ + D ++ R+++ Sbjct: 462 TYQIIG-KKVFDFDDREVARKMIE 484 >gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 482 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 242/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P + E+ I V+ DSR + AG +F+A+ G + DGH +I Sbjct: 1 MKLSELLKTIQP-------VQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D N + V ++ + A+ YG + + Sbjct: 54 PAAIEKGAIAVLCE------DMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKILESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F YN L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNRELAVRFIGKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFD-SIRSPKGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D +II+EI+ Sbjct: 460 NYQEIK-GVKHHFDDKEIIKEIMN 482 >gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] Length = 493 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + DSR ++ G FVAIVG+ DG +I Sbjct: 5 MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI QGA A++ S + N I+ ++ + LS A RLY +++ V Sbjct: 56 EKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++ + Q + +G + +G T Q TT + + + K L+ L Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +A AK ++ Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233 Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AII DD + + G + K + V + + Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GEF N L+A +A+G+D +L+ L V GR E N ++ Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA LAD ++TDD Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I +++ G+ + + +R A++ A++ D++++AGKGHE ++ Sbjct: 413 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472 Query: 476 TNGEKKMSVDCDIIREILGL 495 + D + +++LG+ Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491 >gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] Length = 486 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 150/502 (29%), Positives = 242/502 (48%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+++DLIYK I + + + DSR ++ G +F+A+ G DGH FI Sbjct: 1 MQIKDLIYKV-------SLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 I +GA A+V + ++ I+ V ++ + L + AS Y ++ Sbjct: 54 ADVIQKGATAVVCE-----ELPEIESTADCTIIQVKDSAEALGMIASNFYDSPSSKLKLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + + ++ ++ G + + + I TTP I L K L+ + Sbjct: 109 GVTGTNGKTTTVTLLYRLFRKLGYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLADM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G TH +E SSH Q R+ G++ G F+N+ DH+DYH+T Y AK LF + Sbjct: 169 VKAGCTHCFMEVSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAKK-LFFDG 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP +S A+I +DD + +++ + L + ++ Sbjct: 228 LPNDSFALINSDDKRGRVMIQNTRAKTYTYSLLALADFKGKLISTTMQG------LEMDV 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F L G F YN L + +G D VL L + GRFE + +R Sbjct: 282 DGIQAWFRLIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANGRFEQQISATR-IT 340 Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++L+ +L+ I + + +II V GCGG+RD KRP+M IA +D ++T Sbjct: 341 VIVDYAHTPDALKNVLETITELKGANKIITVVGCGGNRDAAKRPVMADIACQFSDHVVLT 400 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+E+P+ I E+ G+ + +R EAI+ A + + D+++VAGKGHET Sbjct: 401 SDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K D II+E+L Sbjct: 461 YQEIK-GVKYPFDDRLIIKELL 481 >gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1058 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 185/490 (37%), Positives = 268/490 (54%), Gaps = 13/490 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K L + + P + ++ + + DSR ++ G++F A G K +G FI +AIA Sbjct: 576 TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIA- 633 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 + A ++ LV +N R + A+R Y P + AVTGT+GK Sbjct: 634 -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 686 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SVA +Q+ +G + IG + + +TTP + S L+ ++HV Sbjct: 687 TSVAELCRQLWTIAGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 746 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 EASSHGLDQ+R DG K+IAG+FT+ RDH+DYH T + Y AK+RLF+E + + A+ Sbjct: 747 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 806 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ++ADD + V+ G +++ +G + + I L A Q +T+S++G+ + P Sbjct: 807 VWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 866 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G +Q+ NALVAAGL +A G D + L L V GR E + G +YVDYAHT Sbjct: 867 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 926 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L ++ +R T GR+ VVFG GGDRD+GKRP MGKIA +LAD IVTDDNPR ED Sbjct: 927 PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 986 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482 IR EI+ G P E G R EAI +AI+ K D++++AGKGHE I+ GE Sbjct: 987 ATIRKEILVGSPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 1046 Query: 483 SVDCDIIREI 492 D + +E Sbjct: 1047 FDDVTVAKEA 1056 >gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + DSR ++ G FVAIVG+ DG +I Sbjct: 5 MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI QGA A++ S + N I+ ++ + LS A RLY +++ V Sbjct: 56 EKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++ + Q + +G + +G T Q TT + + + K L+ L Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +A AK ++ Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233 Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AII DD + + G + K + V + + Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GEF N L+A +A+G+D +L+ L V GR E N ++ Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA LAD ++TDD Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I +++ G+ + + +R A++ A++ D++++AGKGHE ++ Sbjct: 413 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472 Query: 476 TNGEKKMSVDCDIIREILGL 495 + D + +++LG+ Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491 >gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 246/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ P + + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + ++ Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEG------MLLDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. Y412MC61] gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC61] gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] Length = 489 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 155/503 (30%), Positives = 238/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I + DSR + G +F + G DGH F Sbjct: 1 MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+A+GA AIV S+ + P+++V ++R+ +++ A YG+ + + Sbjct: 54 EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ S ++QI +++G + IG + TTP + L + + Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NA +L Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + K A + + + +++ + Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRITAGGMAFRL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + I VDYAHT +SLE LK +R + + VV GCGGDRD+ KRP+M ++A+ AD+A Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP++I ++ G+ + +R EAIR AI + DV+++AGKGH Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET I+ N + D + R Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484 >gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] Length = 491 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 147/508 (28%), Positives = 228/508 (44%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ ++N+++ DSR + G +F+ I G DGH F Sbjct: 1 MKLSELMQAIPV-------FTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA AI+ + P++ V +T++ +++ A+ YG + ++ Sbjct: 54 KKAEELGAVAIIAEKTVDVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 QGV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLQGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD S + + + Sbjct: 225 GNSYHSSNPKIAVLNADDEESVRMQTATAAHVITFGI--KAAADFRASNIQITSHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + G F + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LDTPGGHFKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHAG 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDY+HT + L +L+ I R+ VV GCGGDRD+GKRP M K+A+ A Sbjct: 343 Q-DFPVIVDYSHTPDGLLNVLQTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPRSE+P +I ++I G+P ++ NR +AI+ AI DV+++AGKGH Sbjct: 402 PVFTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E I+ + E D R + L Sbjct: 462 EDYQIIGD-EVIDFDDRVEARIAIEKKL 488 >gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 500 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A + + V ++ + + L G F V N L A Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] Length = 482 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 245/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ P + + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + ++ Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 238/477 (49%), Gaps = 13/477 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + E++ DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q Sbjct: 15 DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQHLQVHY 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P++ + LS A Y +++ + VTGT+GK++ A + Q Q G + Sbjct: 75 EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G ++ TT S + + +L+ ++G ++E SSHGL QHR++ + Sbjct: 135 AVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262 A FTNL RDH+DYH T + Y AK RLF EL + ADD + + Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQII--DADDPVGAVWLAEMPHA 252 Query: 263 --AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + Q ++ V H + + + PL G F V N L+ Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G + ++ + KL V GR E + + + VDYAHT ++LE L+ R Sbjct: 313 TLLTLGYPLSGLINSVHKLTGVCGRMEILH-APQKPTVIVDYAHTPDALEKALQAARLHC 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 G++ +FGCGGDRD GKRP+M +IA LAD I TDDNPR+E+P+KI A+I++G Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AI TAI+ + DV+++AGKGHE I+ K D ++ R L Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKYHFSDQEVARNYLS 487 >gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] Length = 482 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 155/503 (30%), Positives = 244/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ P + + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + ++ Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPLGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] Length = 492 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 40/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + KI + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222 Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF + A++ ADD + K G + K + Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRME 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + ++ + VDYAHT ++LE +L IR G+II VFGCGGDRD KR IMG IA Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKKRSIMGGIAG 399 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++ Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIV 459 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHET I+ + D + R+ + Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489 >gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] Length = 487 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 229/502 (45%), Gaps = 26/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +++L K + + +P ++ ++ +S +S+ I+ G++F AI GN+ DGH FI Sbjct: 1 MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 +A A VV + + V +T + L + Y + + Sbjct: 61 QEAFKNKAIGAVVEKDVDYVNT----------IKVRSTLQALRETSLVFYDYPFKKLFLG 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSY 176 +VTGT+GKS++ + + SF +G + TTP + + L Sbjct: 111 SVTGTNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQ 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + +E SSH L RL GI+ A FTNL RDH+D+H + + YF K LF Sbjct: 171 AIQLDMKYGFLEVSSHALKLGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTS 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 KE+ ++ D + G + + + Sbjct: 231 TYLKENAFVVINIDD----LYGINLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLL 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+ G F N L A +GI+ + + L GR E ++ Sbjct: 287 VEGQKVFAPIYGRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGRLE--CVQTKPF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +I++DYAHT + LE +LK++R + +II+VFG GG+RD+GKRPIMG+IA +D I+T Sbjct: 345 KIWIDYAHTPDGLEKVLKSLRDMVEKKIILVFGAGGNRDKGKRPIMGRIAAQFSDYTIIT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR EDP I EI G F +R EAI+ AIE+ D +++AGKGHE Sbjct: 405 SDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIIIAGKGHED 464 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + NG K D ++++E++ Sbjct: 465 YQEI-NGVKYPFSDKEVVKELI 485 >gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] Length = 501 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 156/480 (32%), Positives = 227/480 (47%), Gaps = 22/480 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 R++ ++ V N + LS A Y E + + VTGT+GK++ A + Q G Sbjct: 84 LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+T + Y AK RLF EL K + ADD +E + + Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261 Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 NA + V ++ + + L G F V N L Sbjct: 262 NAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTTL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G D ++E L V GR E + VDYAHT ++LE L+ Sbjct: 322 ASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A I+ G Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKIMANILKGF 441 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500 >gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium vitis S4] gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase [Agrobacterium vitis S4] Length = 486 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 238/495 (48%), Positives = 311/495 (62%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL DF +L L + +I +++DSR ++ G +FVA+ G K DG F Sbjct: 1 MKLRDLASGDFGDLTGPLD---GPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGF- 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A V+ + + + P LV D R L+L A+R+Y PE ++AV Sbjct: 57 --------VADAVARGAAAVLSGSHLDIAVPALVTDQPRHALALLAARVYSGQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +GL+S QIG T IS D LTTP P+ L + L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQ 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T Y AKMRLF+ LLP Sbjct: 169 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E ++ A AG V +VG G F+ LK+V +KQ I +G Sbjct: 229 KGSPAVIFADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQ+ NALV+AGL I+ G++++L L+ LEKL GR E VG + G Y Sbjct: 289 FEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L +R TSGRIIVVFGCGGDRD+GKRPIMG+IA LADI IVTDDN Sbjct: 349 VDYAHKPDALEKVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLADIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE IR+E++ P IE G+R +AIR A+ ML D L+VAGKGHE IV Sbjct: 409 PRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKGHEEGQIVGAQT 468 Query: 480 KKMSVDCDIIREILG 494 D IR+ + Sbjct: 469 -LPFSDHAEIRKAME 482 >gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 494 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 158/501 (31%), Positives = 242/501 (48%), Gaps = 20/501 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + +L+ I + ++ DSR + G +FVAI G++ DG FI QA+A Sbjct: 1 MLSRALDQLMRPFGITAPALA---LTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVA 57 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 QGA A++ P L + + LS A Y + + + +TGT Sbjct: 58 QGATAVLFEEDGEF----VAPALGVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGT 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GKS+ A V C G + +G + TT S + + L+ L +QG Sbjct: 114 NGKSTTALLVANWCTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGA 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V++E SSHGL QHR+ + A FTNL RDH+DYH T +AY AK L + L E Sbjct: 174 DLVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVAEP 231 Query: 243 PAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A++ ADD ++ + G+ G+ + + + I+ + Sbjct: 232 CAVLNADDRLGRQWLAAYPAAVAFSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGN 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G F V N L A G + +G D +L +L V GR E G Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFDELLASAPQLQPVTGRMECFGGGKAPL-AV 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L+ +R GR+ + GCGGDRD+GKRP+M +A AD I+TDDN Sbjct: 351 VDYAHTPDALEKALQALRVHCEGRLWCLVGCGGDRDRGKRPMMAAMAELHADRVILTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR+E+P +I A+++ G+ + +R +AI A+ +KQD+++VAGKGHE I+ Sbjct: 411 PRTEEPARIMADMVAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKGHEDYQIIG 470 Query: 477 NGEKKMSVDCDIIREILGLIL 497 +K+ D + + L +L Sbjct: 471 T-DKRHYSDRETVAAALHTLL 490 >gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] Length = 495 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 169/503 (33%), Positives = 246/503 (48%), Gaps = 19/503 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+++ + K E+ + + I ++ I + DSR +Q G ++ + G DGH F Sbjct: 1 MRVKSV-RKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 QAIAQGA A++V + + P L V R+ + A+ LY + Sbjct: 60 AAQAIAQGAAALLVER---------ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEV 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ V+ I G IG I+ TTP I L K L Sbjct: 111 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV +E SSH L R+ G + AG F+NL +DH+DYH+T + Y AK +LF Sbjct: 171 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 230 Query: 237 LL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L KE + D + E + R A V + + + + T+ Sbjct: 231 LTGVKEPKVGVVNGDDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRF 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G+ + PG F VYNAL A + G V E L + VPGRFE V Sbjct: 291 KGEAEQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQ-P 349 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +I VDYAHT + LE + + + T GR+I VFGCGGDRD+GKRP MG IA +L+D IV Sbjct: 350 FQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIV 409 Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T DNPR+EDP +I +I+ GI + NR EAI A + + D +++AGKGHE Sbjct: 410 TSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ + D ++ RE L + Sbjct: 470 IIG-KDVFPFDDREVAREALRRL 491 >gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] Length = 968 Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 163/501 (32%), Positives = 248/501 (49%), Gaps = 24/501 (4%) Query: 6 LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K EL + ++ KI ++ DSR + G +FVAI G DGH FI QA+ Sbjct: 1 MAMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAV 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122 +GA AI+ + + +A +L V N L + + + + +TG Sbjct: 61 EKGACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK++ + + I + +G IG + A TTP + L + L+Y++ +G Sbjct: 115 TNGKTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRG 174 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EEL 237 + V +E SSH LDQ+R+ GI+ FTNL +DH+DYH+T + Y AK RLF + Sbjct: 175 MDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKG 234 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A++ DDA + ++ A A + + ++T++ Sbjct: 235 AKEGKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAAL--RAENIRVHARGLELTLAGAF 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D + G F VYN + A G +A I + LE VPGRFE V Sbjct: 293 GRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQA-FS 351 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VDYAHT + LE IL R I +GRI+ VFGCGGDRD+ KRPIMG+IA L+D+ +VT Sbjct: 352 IIVDYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTS 411 Query: 418 DNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+EDP +I E+ G+ + +R AI A+ + K D++++AGKGHE Sbjct: 412 DNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHEN 471 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 I+ + + D ++ RE Sbjct: 472 YQILKD-KTIHFDDKEVAREA 491 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 162/455 (35%), Gaps = 38/455 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +++ +D+R I AG +FVA+ G + DG F QA+ +GA ++V ++ A Sbjct: 520 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 575 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +L +T A+ K ++A+TG++GK++ ++ Sbjct: 576 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDL----------TA 625 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202 +G + A + P+ L + + VE GL Q Sbjct: 626 AVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEA-----AVVEIGMRGLGQIAALAPLA 680 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G H++ + + AK L E + I+ ADDA + ++A Sbjct: 681 APTVAIVTNVGEVHMELLGSIENIARAKAELVEA-VEPGGTVILNADDARVLAMREKAKA 739 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALV 317 V + + V + + + + + P+PG V NAL Sbjct: 740 GVRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALA 799 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +G+ A V L RF + + Y + S LK + Sbjct: 800 AIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAY-TFVNDAYNASPVSTRASLKTLA 858 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + +GR I V G G + +G+ A L A++ R E+ I Sbjct: 859 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVL----SRGEESRFIAEAAKA 914 Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+P + A E+L D ++ KG Sbjct: 915 GGVPLVERMTSHEAAAARLKEILQPGDAVLF--KG 947 >gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] Length = 966 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 163/498 (32%), Positives = 247/498 (49%), Gaps = 24/498 (4%) Query: 9 KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL + ++ KI ++ DSR + G +FVAI G DGH FI QA+ +G Sbjct: 2 KTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A AI+ + + +A +L V N L + + + + +TGT+G Sbjct: 62 ACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + + I + +G IG + A TTP + L + L+Y++ +G+ Sbjct: 116 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPK 240 V +E SSH LDQ+R+ GI+ FTNL +DH+DYH+T + Y AK RLF + + Sbjct: 176 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKE 235 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ DDA + ++ A A + + ++T++ Sbjct: 236 GKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAAL--RAENIRVHARGLELTLAGAFGRM 293 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D + G F VYN + A G +A I + LE VPGRFE V I V Sbjct: 294 DLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQA-FSIIV 352 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + LE IL R I +GRI+ VFGCGGDRD+ KRPIMG+IA L+D+ +VT DNP Sbjct: 353 DYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNP 412 Query: 421 RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 R+EDP +I E+ G+ + +R AI A+ + K D++++AGKGHE I Sbjct: 413 RTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQI 472 Query: 475 VTNGEKKMSVDCDIIREI 492 + + + D ++ RE Sbjct: 473 LKD-KTIHFDDKEVAREA 489 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 162/455 (35%), Gaps = 38/455 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +++ +D+R I AG +FVA+ G + DG F QA+ +GA ++V ++ A Sbjct: 518 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 573 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +L +T A+ K ++A+TG++GK++ ++ Sbjct: 574 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDL----------TA 623 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202 +G + A + P+ L + + VE GL Q Sbjct: 624 AVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEA-----AVVEIGMRGLGQIAALAPLA 678 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G H++ + + AK L E + I+ ADDA + ++A Sbjct: 679 APTVAIVTNVGEVHMELLGSIENIARAKAELVEA-VEPGGTVILNADDARVLAMREKAKA 737 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALV 317 V + + V + + + + + P+PG V NAL Sbjct: 738 GVRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALA 797 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +G+ A V L RF + + Y + S LK + Sbjct: 798 AIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAY-TFVNDAYNASPVSTRASLKTLA 856 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + +GR I V G G + +G+ A L A++ R E+ I Sbjct: 857 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVL----SRGEESRFIAEAAKA 912 Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+P + A E+L D ++ KG Sbjct: 913 GGVPLVERMTSHEAAAARLKEILQPGDAVLF--KG 945 >gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 494 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 150/501 (29%), Positives = 247/501 (49%), Gaps = 29/501 (5%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DL+ + D E+ + I + DSR + +F+ I G + DGH F Sbjct: 1 MKLMDLLEEIDTIEIKGEER--------INIENIYYDSRKVTPNSLFICIEGFQTDGHHF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I QAI +GA AIV + D + V +TR+ ++ S YG+ +++ Sbjct: 53 IDQAIKKGAIAIVAQKDMTGLD-------GVTWVQVKDTRQVMAQLGSTFYGRPSQHLEL 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S +++I + IG + + + + TTP I L + Sbjct: 106 IGVTGTNGKTSTTYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKE 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ + VT +E SSH L R+ + G FTNL +H+D+H+ Y AK +LF Sbjct: 166 MADEKVTECVMEVSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYL 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295 DD + + + +++ G + + + K + + Sbjct: 226 TTVANVI---NIDDPHGAMIAEEVKKLKPSLITFGIKKQATVMAKNIATTLKDVTFDLVT 282 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +PG F YNAL + IAIG+ ++++ ++ + VPGRFE V + Sbjct: 283 PVGEARVTVKIPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPGRFESV-LGIKD 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +++E +++ + +T R+I VFGCGGDRD+ KR +MG+I+ L+D++++ Sbjct: 342 FSVIVDYAHTPDAIENVIQAAKNVTEHRVITVFGCGGDRDRTKRSVMGEISGSLSDLSVI 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR+EDP KI I GI + +R EAIR A++ K D++++AGKGHE Sbjct: 402 TSDNPRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKGHEA 461 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 + + DC + REI Sbjct: 462 TQQIGSNVII-FDDCGVAREI 481 >gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 486 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 168/502 (33%), Positives = 257/502 (51%), Gaps = 24/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ ++ E I + ++N+++ DSR +FV + G DGH +I Sbjct: 1 MNLKSILKGIDYESI-------QGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA+ IV+ ++D N I+ ++TRK L+L + Y I + Sbjct: 54 EKAIENGAKVIVIQDDIEIKD------ENITIIKCNDTRKALALMGANYYDNPSSKIKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A ++ I + S IG + I TTP + L + S + Sbjct: 108 GVTGTNGKTTTAFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV + +E SSH L R+ GI+ G FTNL RDH+D+H+T + Y+ AK +LFE Sbjct: 168 VDKGVEYCVMEVSSHSLALDRVYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFERS 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K DD Y ++V+ +N C + K +++ + Sbjct: 228 RIKIVNV----DDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNL 283 Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K+ F+ +PGE+ +YNAL A C +G+ + +E + V+ + G Sbjct: 284 KEDEQFVLNIPGEYNIYNALGAIAACFKLGMPIKDIKSGIENVVVLGRCERVAKEYNLGY 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAHT + LE ILK + T GR+I VFGCGGDRD+ KRP MGKI+ D+ADI IVT Sbjct: 344 EIIIDYAHTPDGLENILKTAKAFTKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVT 403 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE+P I +I GI + NR EAI+ +I++ DV+V+AGKGHET + Sbjct: 404 SDNPRSEEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKGHETYQV 463 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + + E + +I++EIL + Sbjct: 464 LKD-ETIHFDEREIVKEILDNM 484 >gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] Length = 502 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 186/509 (36%), Positives = 267/509 (52%), Gaps = 25/509 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ L+ P Q KI +S +SR I+ G +F A+ G+ DG ++I Sbjct: 1 MHLSDLLKN--------LADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA I+ + +TPI++V+N R L+ A+R + K P I AV Sbjct: 53 KAAIDAGARVILTD---MRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN--------RLTTPSPIYLAK 172 TGT+GK+S F++Q+ R + IG + + +LTTP + L Sbjct: 110 TGTNGKTSTTDFLRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHS 169 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ALS L GVTH+++EASSHGL Q RLDG+ + +FTNL +DH+D+H ++YF AK Sbjct: 170 ALSPLCDAGVTHLALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSH 229 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHN 287 LF +LL AII DD Y + + G ++K+ I N Sbjct: 230 LFMDLLMHAGAAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDN 289 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 +++ +GK + + G FQ NAL A + G+ L L L PGR + Sbjct: 290 ILDMSVKHDGKSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQ 349 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + +G +I VD+AHT ++L L+ +R S ++ V+FGCGGDRD KR +MG IA Sbjct: 350 TVTGHPQGAQIVVDFAHTPDALRAALEALRPEVSHKLYVLFGCGGDRDPSKRALMGAIAD 409 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 D AD+ IVTDDNPRSEDP IR+ I+ P IE R AI+TA+E L + DVL++AGK Sbjct: 410 DAADVVIVTDDNPRSEDPASIRSAIMAASPKSIEIFPRDTAIKTALEQLVEGDVLLIAGK 469 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496 GHETV ++ + E D + I+ + Sbjct: 470 GHETVQLIGD-ETLPFSDISVASRIIADM 497 >gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus succinogenes 130Z] gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus succinogenes 130Z] Length = 488 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 157/503 (31%), Positives = 233/503 (46%), Gaps = 25/503 (4%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L L+ + PEL + E+ DSR ++ G +FVAI G+ DG F Sbjct: 1 MKNLTALLGLNSPELDG-----------IRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRF 49 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118 IP AI + A A++ + N P++ N + LS A + Y + ++ Sbjct: 50 IPVAIERHAAAVLAECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLIL 109 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 VTGT+GK++V+ + Q + G +G Q TT S I + +L+ Sbjct: 110 TGVTGTNGKTTVSQLLAQWARILGNIPAVMGTVGNGLLGQLQSAANTTGSAIEVQSSLAR 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 QG ++E SSHGL Q R++ +K A FTNL RDH+DYH + A + Sbjct: 170 FIEQGADFAAIEVSSHGLVQKRIEALKFTAVIFTNLSRDHLDYHGSM--TAYADAKKRLF 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 II ADD + ++ C Q ++ + + ++ Sbjct: 228 TALPSKYQIINADDEVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKF 287 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D L G F V N L+ + +G ++ + +L V GR E + Sbjct: 288 ASSWGDGVLASRLIGAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLK-AV 346 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L+ RT G++ +FGCGG+RD GKRP+M +IA LAD Sbjct: 347 HKPTVIVDYAHTPDALEKALQAARTHCRGKLWCIFGCGGERDNGKRPMMAQIAESLADRV 406 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IVTDDNPR+EDPEKI A+I G R AI AI+ + DV+++AGKGHE Sbjct: 407 IVTDDNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 IV EK+ D + ++ L Sbjct: 467 DYQIVG-KEKRYFSDQETAKKYL 488 >gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] Length = 492 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 142/511 (27%), Positives = 229/511 (44%), Gaps = 40/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + + +I + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------MPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGL 222 Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF + A++ ADD + K K + Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPK 280 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 281 GIRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRME 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGGIAG 399 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++ Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIV 459 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHET I+ + D + R+ + Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489 >gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] Length = 482 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 153/503 (30%), Positives = 244/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ P + + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + ++ Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] Length = 491 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 149/507 (29%), Positives = 238/507 (46%), Gaps = 29/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233 + GV+ +E SSH L Q R+ G F NL +DH+DYH T Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 +P + + ++ V + A + Q + + + Sbjct: 224 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + +F + G F VYN L A A+ I + LE + V GRFE V Sbjct: 284 TTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 343 QAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYASNP 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 403 IFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 ++ + E D R + L Sbjct: 463 DYQLIGD-EVIDFDDRVEARIAIEKKL 488 >gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] Length = 493 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + DSR ++ G FVAIVG+ DG +I Sbjct: 5 MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI QGA A++ S + N I+ ++ + LS A RLY +++ V Sbjct: 56 EKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++ + Q + +G + +G T Q TT + + + K L+ L Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +A AK ++ Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233 Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AII DD + + G + K + V + + Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GEF N L+A +A+G+D +L+ L V GR E N ++ Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA LAD ++TDD Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I +++ G+ + + +R A++ A++ D++++AGKGHE ++ Sbjct: 413 NPRSEDPTMIVQDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472 Query: 476 TNGEKKMSVDCDIIREILGL 495 + D + +++LG+ Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491 >gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] Length = 487 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 162/503 (32%), Positives = 252/503 (50%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+Y P I + E+++ V+ DSR I+ G +F+A+ G + DGH +I Sbjct: 1 MKLQELLYDIKP-------IQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 +AI GA AI+ L+D + V++T + A+ YG +++ Sbjct: 54 AKAIELGATAIL------LEDMPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHLILV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + +R G + + I A TTP PI L LS + Sbjct: 108 GVTGTNGKTTIATLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + Q R+ G+K FTNL RDH+DYH+T + Y NAK F + Sbjct: 168 VKAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K++ AI ADD +++ + + + + V G Sbjct: 227 LSKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFSAKI----LECHFDGMELEVNG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ + G+F V N L G + +G D VL L LH V GR + + G Sbjct: 283 KEVNVQ--FIGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFH-SPNGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I+ Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R E IRTA + K DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQDIK-GVKHHFDDKEVLQEIF 481 >gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] Length = 491 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 224/468 (47%), Gaps = 14/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + G IFVAI G DGH FI +A A GA+ IV Sbjct: 27 VRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHEREL------TDYLEKPTY 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V ++ + + E ++ VTGT+GK++ A V+ I + +G I Sbjct: 81 IRVTDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAGEPCGLISTV 140 Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TTP L L+ + G+ ++E SSH L Q R++G + F Sbjct: 141 EYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQGRINGARFRTAIF 200 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL DH+DYH + Y+ AK F LL + A+I DD + K + R + +V Sbjct: 201 TNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLA-RDISGRQQVTF 259 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + ++ E + FD L G ++N A + G+ Sbjct: 260 GMTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILAALDYGLKP 319 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L + VPGR E + G YVDYAHT ++L+ +L+ +R IT G++I VFG Sbjct: 320 EAISHALNRPIRVPGRLEPFRASPEGPVFYVDYAHTDDALKNVLEILRKITKGKLIAVFG 379 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446 GGDRD+ KRP MGK A AD I+T DNPRSE+P+KI EI GIP F + +R Sbjct: 380 AGGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGTSFETEPDRA 439 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +A+R A+ + DV+++AGKGHE + G ++ D +I+ ++ Sbjct: 440 QALRRAVAVARPGDVVLIAGKGHENYQEIQ-GVRRSLDDRKLIKTLIS 486 >gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 493 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 164/492 (33%), Positives = 244/492 (49%), Gaps = 19/492 (3%) Query: 11 FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 LI+ L + +++I V DSR I+ G++FV I G K DGH ++ A+ GA Sbjct: 4 LENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAI 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A++V ++ V +TRK L + AS YG ++ VTGT+GK+ Sbjct: 64 ALLVEK-------PVAGTQGVTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + + +G +G Q+ TTP + L + + + +G + Sbjct: 117 TTTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LD R+D + A FTNL +DH+DYH+T Y AK++LF L K+ + Sbjct: 177 MEVSSHALDLGRVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAV 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D S V + A + + + +V T+ D L Sbjct: 237 INRDDPSWTVFRDATPSRVVTYGITDEAAV-RATEVRVEPEGSCFTLKWPEGDLRLSLNL 295 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V NAL AA + GI ++ LEK+ +PGRFE V + VDYAHT Sbjct: 296 SGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCGQ-DFTVIVDYAHTP 354 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + LE ILK R I RII VFGCGGDRD+GKRP+MGKIA + +D +I+T DNPRSEDP Sbjct: 355 DGLENILKTARAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDPL 414 Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I +I+ G+ + +R AI AI M +D++++AGKGHET ++ + E Sbjct: 415 AIIEDIVTGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKGHETYQLLKD-EVL 473 Query: 482 MSVDCDIIREIL 493 D ++ +E + Sbjct: 474 PFDDREVAKEFI 485 >gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium cellulovorans 743B] gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] Length = 481 Score = 326 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 163/499 (32%), Positives = 251/499 (50%), Gaps = 28/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++LI E++N + IN + DSR + + +FV I G DGH F Sbjct: 1 MNLKELIKDLDYEVLNG-------DIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA I+ T + I+ V NTRK L+ ++ Y I+ Sbjct: 54 EKAVNSGANVIICEKDI-------TAYKDVTIIKVKNTRKALAKVSAVYYNNPERRLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I +++G IG + I TTP + L K + + Sbjct: 107 GVTGTNGKTTSVFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV + +E SSH LD R+ GI+ +G FTNL +DH+DYH+T + YFN+K +LF Sbjct: 167 TEAGVDYCVMEVSSHSLDLDRVYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLFTVS 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II DD Y + + ++ + + + + + G Sbjct: 227 KSS----IINLDDDYGVALADKTQE---KLTYAIDKNADLKAENINLTSRGSTFELEYNG 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + F +PG++ + NAL G + G+ ++ E L+ L VPGR E V G Sbjct: 280 EKEIFNINIPGKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGF 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I VDYAHT +SL ILK R T GR+I VFGCGGDRD KR IMG I + +DIAI+T Sbjct: 340 EIIVDYAHTPDSLLKILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIIT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE+P +I +++ GI ++ + +R +AI+ A++ D++VVAGKGHE + Sbjct: 400 SDNPRSEEPSEIIKQVVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKGHEDYQV 459 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + + +I E++ Sbjct: 460 LKDKTID-FDERIVIDELI 477 >gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] Length = 493 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 145/511 (28%), Positives = 232/511 (45%), Gaps = 40/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + KI + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222 Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF + A++ ADD + K G + K + Sbjct: 223 LFARLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRME 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAG 399 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++ Sbjct: 400 SYSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIV 459 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHET I+ + D + R+ + Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489 >gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes L99] Length = 491 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 148/507 (29%), Positives = 238/507 (46%), Gaps = 29/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233 + GV+ +E SSH L Q R+ G F NL +DH+DYH T Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 +P + + ++ V + A + Q + + + Sbjct: 224 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + +F + G F VYN L A A+ I + LE + V GRFE V Sbjct: 284 TTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D + Sbjct: 343 QAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNP 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 403 IFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 ++ + E D R + L Sbjct: 463 DYQLIGD-EVIDFDDRVEARIAIEKKL 488 >gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 484 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 243/504 (48%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M + LI P E+I ++I V+ DSR I+A +F+A+ G + DGH + Sbjct: 1 MIISKLISSIKPIEIIGD--------ANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I AI +GA A++ D + + V +T + + A+ YG+ + + Sbjct: 53 IETAIEKGAVAVLCE------DLPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + + I A TTP PI L LS Sbjct: 107 VGVTGTNGKTTIATLLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G +V +E SSH + Q R+ G+ G FTNL RDH+DYH+T + Y +AK F + Sbjct: 167 MVEAGCDYVFMECSSHAIAQKRIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK S AI ADD +++ + + + ++ Sbjct: 226 SLPKTSFAITNADDKNGMYMVQNTKATVKTYSARSLADFKARIIECHFEGMYLEIDGREV 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G F F + N L G + + +L L L V GR E + + G Sbjct: 286 GVRFIGKFNVS------NLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPI-YSPEGF 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + + G++I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TCIVDYAHTPDALENVLLAIHDVLNGKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I ++ G+ + +R EAIRTA + K DV++VAGKGH Sbjct: 399 LTSDNPRFEDPQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + NG K D +++ EI Sbjct: 459 EDYQEI-NGVKHHFNDKEVLYEIF 481 >gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] Length = 492 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 238/505 (47%), Gaps = 28/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +LI + + +I +V+ D+R ++ G +FV I+G+ +DGH Sbjct: 1 MKAIELIKP-----LKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELA 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ +GA +V S + P++ V++T K +++ A+ Y + ++ Sbjct: 56 KEAVQKGATLVVASEPIEVA---------VPVIYVNDTMKAMAILAATFYHHPSQDLRVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V + I + IG S + + TTP I L K L + Sbjct: 107 GVTGTNGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGSKVYETKNTTPDSITLQKTLREM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV S+E SSH L Q R+ G FTNL +DH++YH T + Y AK Sbjct: 167 QDSGVATCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQL 226 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K AI+ DD + ++ Q + + + Sbjct: 227 GNGYQQGKPKFAILNFDDPVGRSFEEKTA--ARVFSYGIDQPADFKATDLSITNRGTRFN 284 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ E + ++ L G+F V NAL A A G+D V++ +EK+ V GRFE V Sbjct: 285 LNFENRVYEVQLQLVGKFNVSNALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVK-G 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT + L +L + I +G + V GCGGDRD+ KRPIM +IA +D Sbjct: 344 DHDFAVIVDYAHTPDGLLNVLNAVNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDT 403 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPR+EDP I E++ G+ + +R EAI+ AIE N D++++AGKGHE Sbjct: 404 VIFTSDNPRTEDPIAILHEVVDGLEEGTYQLIPDRREAIQAAIEQANTNDIVLIAGKGHE 463 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 I+ EK D + + + L Sbjct: 464 DYQIIGT-EKIHFDDVEEAKRAIDL 487 >gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] Length = 496 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 162/481 (33%), Positives = 225/481 (46%), Gaps = 19/481 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +++ DSR +QAG +FVA+ G++ DG FIP AI QGA I+ + + + Sbjct: 19 TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPK 78 Query: 88 ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136 + ++ V K LS A LY + +TGT+GK++ A + Q Sbjct: 79 FAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138 Query: 137 CQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G Q+ TT S I + L+ G ++E SSHGL Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R + + FTNL RDH+DYH T + Y AK RLF EL K ADD +E Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQVIN--ADDEIGRE 256 Query: 256 VMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + NA + G V + + + L G F V Sbjct: 257 WLTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVN 316 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A +A+G D +++ L V GR E T + VDYAHT ++LE L Sbjct: 317 NLLTAFAGLLALGFDIQELVKTAPNLVGVAGRME-CITAPNKPMVIVDYAHTPDALEKAL 375 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R G + +FGCGGDRD GKRP+M IA L D I TDDNPR+ED +KI A+I+ Sbjct: 376 QAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIV 435 Query: 434 HGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 G NR EAI+TAIE DV+++AGKGHE I+ EK D + R+ Sbjct: 436 KGFSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHEDYQIIGT-EKLHFSDQETARKY 494 Query: 493 L 493 L Sbjct: 495 L 495 >gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus kaustophilus HTA426] gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Geobacillus kaustophilus HTA426] Length = 489 Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 155/503 (30%), Positives = 238/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I + DSR + +G +F + G DGH F Sbjct: 1 MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+A+GA AIV S+ + P+++V ++R+ +++ A YG+ + + Sbjct: 54 EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ S ++QI +++G + IG + TTP + L + + Sbjct: 105 GVTGTNGKTTTTSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NA +L Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + K A + + + +++ + Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRMTAGGMAFRL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + I VDYAHT +SLE LK +R + + VV GCGGDRD KRP+M ++A+ AD+A Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP++I ++ G+ + +R EAIR AI + DV+++AGKGH Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET I+ N + D + R Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484 >gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 184/490 (37%), Positives = 266/490 (54%), Gaps = 13/490 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K L + + P + ++ + + DSR + G++F A G K +G FI +AIA Sbjct: 4 TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIA- 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 + A ++ LV +N R + A+R Y P + AVTGT+GK Sbjct: 62 -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SVA +Q+ +G + IG + + +TTP + S L+ ++HV Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 EASSHGLDQ+R DG K+IAG+FT+ RDH+DYH T + Y AK+RLF+E + + A+ Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I+ADD + V+ G +++ +G + + I L A Q +T+S++G+ + P Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIKGESYKIRLP 294 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G +Q+ NALVAAGL +A G D + L L V GR E + G +YVDYAHT Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L ++ +R T G + VVFG GGDRD+GKRP MGKIA +LAD IVTDDNPR ED Sbjct: 355 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482 IR E++ G P E G R EAI +AI+ K D++++AGKGHE I+ GE Sbjct: 415 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474 Query: 483 SVDCDIIREI 492 D + +E Sbjct: 475 FDDVTVAKEA 484 >gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL J1-023] Length = 491 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 155/508 (30%), Positives = 236/508 (46%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++N+++ DSR +Q G +F+ I G DGH F Sbjct: 1 MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA AI+ + + P+L V ++++ +++ A YG + ++ Sbjct: 54 DRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L A++ ADD S + + + Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRMQTATAAHVITFGIKEPADFS--ASNIQITSHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + DF + G F +YN L A A+ I + +E + V GRFE V Sbjct: 283 LKTPVGDFSLKIKMIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDY+HT +SL +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP I A++I G+PG ++ NR +AIR AI M DV+++AGKGH Sbjct: 402 PIFTSDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E ++ + E D R + L Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] Length = 492 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 164/478 (34%), Positives = 243/478 (50%), Gaps = 23/478 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ DSR ++ G+IF AI G DGH FIP+A+A+GA IV + Sbjct: 23 RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVE-------VPPGV 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VV NTR+ L+ A++ YG ++ VTGT+GK++ + + Q G IG Sbjct: 76 VLEVVPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIG 135 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 A TTP + L L+ + +G+ +E SSHGL R+ G+ Sbjct: 136 TLYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALERVTGVAFDVA 195 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H+ + YF K RLF ELL P + A+I DD Y + + G Sbjct: 196 VFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCR--G 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL+ G + +H ++ S G+ + LPG F VYNAL A + + Sbjct: 254 VEVLTYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVG 313 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ L L ++ VPGR E + + + VDYAHT + L IL+ R I+ GR+ Sbjct: 314 EGMPLDLAARALSRVQAVPGRCERI-DEGQDFTVLVDYAHTPDGLLNILRTAREISRGRV 372 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438 IVVFGCGGDRD KRP+MG+IA + AD+ +VT DNPRSEDP I I G+ Sbjct: 373 IVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQGLAQVAPPSR 432 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 ++ +R AI+ A D++++AGKGHE I+ + ++ D ++ R +L + Sbjct: 433 YLLIEDREAAIKEAFARARPGDIVILAGKGHENCQIIGD-KRIPFDDREVARRLLREM 489 >gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 463 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 154/472 (32%), Positives = 233/472 (49%), Gaps = 23/472 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +DSR ++ G +F+ I G DGH + A+ GA A++ SL N P Sbjct: 2 SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSL---------NVP 52 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++V +T + +++ A YG+ + +++ +TGT+GK++ + +++I +G S+ IG Sbjct: 53 VIIVKDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGT 112 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + + TTP + L K + + + V +E SSH LD+ R+ G Sbjct: 113 MYTKVAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGRVHGCDFNVAV 172 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH+T Y AK LF K A++ ADD S E K Sbjct: 173 FTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAAQ 232 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + L G+F VYN L A G + Sbjct: 233 ILTYAIDNEADL--RAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAAL 290 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G++ +LE + + VPGRFE V + VDYAHT +SLE L+ ++ GR Sbjct: 291 ASGLELEAILESISTVKGVPGRFETVDAGQ-DFSVIVDYAHTPDSLENALETVKEFAEGR 349 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441 I VV GCGGDRD+ KRP+M KIA LA A+ T DNPRSEDPE+I ++ G+P + Sbjct: 350 IFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAGVPEGNYTM 409 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI ++ K DV+++AGKGHET + G+ D RE + Sbjct: 410 IADRKEAIAYSVGAAGKGDVILIAGKGHETYQQIG-GQTFDFDDRTAAREAI 460 >gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] Length = 494 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 234/473 (49%), Gaps = 9/473 (1%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A++ ++ Sbjct: 25 IVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWL 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P++ V LS A R+Y ++ VTGT+GK+++ + Q G S + Sbjct: 85 NAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVM 144 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + TT S I + + LS L+ + + ++E SSHGL Q R+ + Sbjct: 145 GTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH T + Y A + K A+I DD K + NA Sbjct: 205 GVFTNLSRDHLDYHGTMEEY--ALAKKSLFTQHKCKHAVINVDDEVGKAWVSDLSNAIAV 262 Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + + V Q++ PL G+F N LVA +++ Sbjct: 263 SLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFSTLLSL 322 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GID ++++ +L V GR E ++ VDYAHT ++LE L +R SG++ Sbjct: 323 GIDKQILVDTASQLQPVIGRMELF-QTPNKAKVVVDYAHTPDALEKALAALRVHCSGQLW 381 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ + Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R +A++ A+E D++++AGKGHE ++ + D + ++LG+ Sbjct: 442 HDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHY-SDRESALQLLGI 493 >gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 497 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 166/508 (32%), Positives = 244/508 (48%), Gaps = 34/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+++D + + +I +V DSR + G +FVA+ G DGH F Sbjct: 1 MRVKDCLV---------VGQLLQGDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P+A+ +GA A+VV + ++ ++ D+TR L A+ + + + Sbjct: 52 PEAVQRGAAALVVERPVAA-------PAHVAVIRTDSTRAALGRLAAEFWRHPSRRMRVV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ V+ + +R G G T + + LTTP L + + Sbjct: 105 GVTGTNGKTTTTHLVKAVLERQGHVVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 + G T+ +EASS GLD +R+D ++ G FTNL +DH+DYH T AY AK +LF Sbjct: 165 AEAGCTYAVMEASSQGLDMNRVDDVEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLL 224 Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 A++ ADD S+ R+ + V ++ + Sbjct: 225 SRPGYKPRKAAVLNADDPASEYY--RSVTEVPVYTYGFRPDAMVRAADVELSPAGTRLRL 282 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + L G F VYNAL AA +A GI ++ + LE VPGR + V Sbjct: 283 CTPQGEVPVSLRLVGRFNVYNALAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQ 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 ++VDYAH+ +SLE +L R T GR+IVVFGCGGDRD KRP+MG+IA LA Sbjct: 343 -PFGVFVDYAHSPDSLENVLHTARGFTRGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHT 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 IVT DNPRSEDP +I +I G+ + +R EAIR A+ M DV+V+AG Sbjct: 402 IVTSDNPRSEDPVRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAG 461 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHET I + D + R ++ Sbjct: 462 KGHETYQIFKD-RTIPFDDRAVARSLIE 488 >gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 492 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 142/509 (27%), Positives = 230/509 (45%), Gaps = 36/509 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57 MKL++L + + KI + DSR I G +F+ + G ED H Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 F+ A+ GA A++V +++ P ++V + R +++ AS Y + Sbjct: 54 QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK++ + +++I G + +G + S + T P L + L Sbjct: 105 KLIGITGTNGKTTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + ++ + +E +S GL R+ G FTNL +DH+DYH T Y + K LF Sbjct: 165 QMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224 Query: 235 EE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 ++ A++ ADD + K G + K + Sbjct: 225 ARLGNDLSTTEKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKGI 282 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +S + + L G F VYNAL A + + GI + + L + GR E + Sbjct: 283 HFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEII 342 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 343 -DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSY 401 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D++++ Sbjct: 402 SDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLI 461 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKGHET I+ + D + R+ + Sbjct: 462 AGKGHETYQILKDST-IHFDDKEKARQAI 489 >gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus YJ016] gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016] Length = 515 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + DSR ++ G FVAIVG+ DG +I Sbjct: 27 MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI QGA A++ S + N I+ ++ + LS A RLY +++ V Sbjct: 78 EKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 137 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++ + Q + +G + +G T Q TT + + + K L+ L Sbjct: 138 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 197 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +A AK ++ Sbjct: 198 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 255 Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AII DD + + G + K + V + + Sbjct: 256 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 315 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GEF N L+A +A+G+D +L+ L V GR E N ++ Sbjct: 316 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 374 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA LAD ++TDD Sbjct: 375 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 434 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I +++ G+ + + +R A++ A++ D++++AGKGHE ++ Sbjct: 435 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 494 Query: 476 TNGEKKMSVDCDIIREILGL 495 + D + +++LG+ Sbjct: 495 KHQTVHY-SDRESAQQLLGI 513 >gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 488 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 161/501 (32%), Positives = 256/501 (51%), Gaps = 24/501 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ LI ++ ++ + I +V+ S++++ G+ F+ I G K DGH +I Sbjct: 1 MKINKLIEGL------EMIETNIKNFDEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI +GA+ I+V Y ++ ++ + NTRK LS+ ++ + +N + Sbjct: 55 DEAIERGAKLIIVDEFYD----TSKLKDKVLFIKTSNTRKALSVISANFFEHPSKNFLLI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S ++ I ++SG IG + I + + TTP L K + Sbjct: 111 GVTGTNGKTSTTFMIKSILEQSGHKVGLIGTVKNMIGQKEIEAKHTTPESYDLQKLFFEM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V V +E SSH L+ HR+D G FTNL +DH+D+H T + YF AK++ Sbjct: 171 KKENVDSVVMEVSSHSLELHRVDCCDFDVGVFTNLTQDHLDFHGTMENYFAAKLK----- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + S + D + R + K+ N+ ++ Sbjct: 226 LFEMSKKRVVNVDDEWGRKIIRIYPDSVTYGINSKADVCAMSVKLYVNKNQFELRQLDND 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +PG F VYNAL AA A+GID + LE + +PGRFE V ++ Sbjct: 286 NKEQVTLNIPGIFSVYNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIV-ESNDKFT 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT Sbjct: 345 IVIDYAHTPDGLLNLMKTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTS 404 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP KI +I+ G+ ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 405 DNPRTEDPIKIIEDILVGLQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQ 464 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ + + +++R IL Sbjct: 465 ILKD-RTIHFDEREVVRSILE 484 >gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR] gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR] Length = 495 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 234/504 (46%), Gaps = 28/504 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL+ +I ++ DSR +Q G+ F+ I G K DGHLF Sbjct: 3 RLTDLLKNI-------YGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQ 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119 A+ GA I+ ++ + ++TR+ L+ + Y NI+ Sbjct: 56 NAVENGATVIIAEKPVTVPSSVTVVTV-------EDTREALAYMGAAFYDYPGDKLNIIG 108 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ I ++G IG + I TTP + L L+ + Sbjct: 109 VTGTNGKTTTTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMV 168 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GV + +E SSH L+ +R+ G + FTN+ +DH+D+H+T Y AK +LF L Sbjct: 169 DAGVDYAVMEVSSHALELNRVAGCEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLG 228 Query: 239 PKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + ++ G + + +K+ + T Sbjct: 229 KNSRKSRNKYGIINIDDSKGQSFLEVTHGQVITYGIQSAADVRAEKIDLRSDGVSFTAVT 288 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D L G F VYN+L A + I ++ E LE++ VPGR E V + Sbjct: 289 PRGSVDLKLNLTGLFNVYNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKV-EAGQP 347 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT + LE +L R T GR+I VFGCGGDRD+ KRPIMG+++ L+D ++ Sbjct: 348 FAVLVDYAHTPDGLENVLSAAREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDFTVL 407 Query: 416 TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPRSE P +I +I G+ + +R EAIR A+ M DV+V+AGKGH Sbjct: 408 TSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAGKGH 467 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET IV + D ++ EIL Sbjct: 468 ETYQIVGT-KVLPFDDREVAMEIL 490 >gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL S4-378] Length = 491 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 154/508 (30%), Positives = 238/508 (46%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++N+++ DSR +Q G +F+ I G DGH F Sbjct: 1 MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA AI+ + + P+L V ++++ +++ A YG + ++ Sbjct: 54 NRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L A++ ADD S + + A + + + + Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRM--QTATAAHIITFGIKEPADFSASNIQITSHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + DF + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LKTPVGDFSLKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDY+HT +SL +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP I ++ G+PG ++ NR +AIR A+ M DV+++AGKGH Sbjct: 402 PIFTSDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E ++ + E D R + L Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] Length = 485 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 172/502 (34%), Positives = 258/502 (51%), Gaps = 33/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL P L+ + + + ++ +++DSR ++ G++F A+ G K +G+ F Sbjct: 1 MKL--------PHLLKGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ +GA A+V S + F + P+L+V+N+RK L+ A+ LYG + IL Sbjct: 53 EEALKKGASAVVTD---SRKWFEKLSAAGKPVLLVENSRKALATAAANLYGNPQKELKIL 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + + R G+ + IG S + TTPS + L K L L Sbjct: 110 GVTGTNGKTTTTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKEL 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G V E SSHGL QHR+ GI+ FTNL +H+DYH + YF AK +LF Sbjct: 170 KNRGCEFVVCEVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFRL- 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +++ DD Y + G + ++ G + + ++ + V I Sbjct: 229 ---SKLSVVNRDDPYGTTLSALRAVNGGKTVTYGKKSRNYTIEAIDPEG---SVLIGTPK 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L GEF YN A L +G + + E + + V PGR E V Sbjct: 283 GAVKVKHNLKGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKV-PGRMEEVVPG----- 336 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 ++VDYAHT ++L+ L ++ SGR+IVVFGCGGDRD+ KRP+MGKIA LAD IVT Sbjct: 337 VFVDYAHTPDALQKALNALKKACSGRLIVVFGCGGDRDRTKRPVMGKIAATLADSVIVTS 396 Query: 418 DNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSE PE+I E++ GIP + +R AI A+ + D L++AGKGHE Sbjct: 397 DNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKGHENY 456 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 V G+K D + +RE+ G Sbjct: 457 QEVA-GKKLPFSDQETVRELYG 477 >gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 495 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 161/511 (31%), Positives = 243/511 (47%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + F L+ I + +++ V DSR I+ G +F+ I G DGH F Sbjct: 1 MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 +A+ GA A+VV + N P ++V TR ++LFA+ YG H I+ Sbjct: 54 GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++QI + G + +G I S TT + + K L+ + Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + +E SSH LD R+ GI +G FTNL +DH+DYH+T Y AK +LF + Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224 Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 AI+ DD S+ + + + Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRLTSAEVITYGIEKECDV--RASNIRITAEGTE 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T++ + L G+F VYNAL A +A GI + + L ++ VPGR E V Sbjct: 283 FTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV- 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + + VDYAHT + LE L ++ G + VFGCGGDRD+ KRP+MGK+ + Sbjct: 342 SEGQDYLVLVDYAHTPDGLENALSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D VT DNPR+EDP I +I+ GI F +R AI+ AIE+ + +DV++ Sbjct: 402 DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET + N K D + +E + Sbjct: 462 IAGKGHETYQDIMN-VKHDFDDRLVAKEAIR 491 >gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria innocua Clip11262] gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262] Length = 491 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 155/508 (30%), Positives = 239/508 (47%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++N+++ DSR +Q G +F+ I G DGH F Sbjct: 1 MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA AI+ + + P+L V ++++ +++ A YG + ++ Sbjct: 54 DRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L A++ ADD S + + A + + + + Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRM--QTATAAHIITFGIKEPADFSASNIQITSHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + DF + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LKTPVGDFALKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDY+HT +SL +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP I ++I G+PG ++ NR +AIR A+ M DV+++AGKGH Sbjct: 402 PIFTSDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E ++ + E D R + L Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488 >gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 482 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ P I + +I V+ DSR I G +F+A+ G + DGH +I Sbjct: 1 MRLSDLLQTIQPVRITGSTSM-------EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ + +++ + V ++ + A+ YG + + Sbjct: 54 PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + G + + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+E Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F YN L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFD-AIRSPKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +I+ EI+ Sbjct: 460 NYQEIK-GVKHHFDDKEILNEIM 481 >gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] Length = 509 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 155/495 (31%), Positives = 233/495 (47%), Gaps = 14/495 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K L + +I +S DSR I G +F A+ G+ DG FI AI++ Sbjct: 10 TAKRLQTLFENVVCERATEHNPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISR 69 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A+V ++ +++ ++ P+++V N + LSL A Y ++ VTGT+ Sbjct: 70 GATAVVADASDDFDF--SSVPNDIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGV 182 GK++ + Q+ + G + IG S + QD LTTP I + L+ L + G Sbjct: 128 GKTTCVQLLMQLFNQLGEKAASIGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGA 187 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 T V++E SSH L+Q R+D + FTN+ RDH+DYH T + Y AK RLF + + Sbjct: 188 TFVAMEVSSHALEQGRVDAVNFEGAVFTNISRDHLDYHGTFEHYIAAKSRLFTFDALRFA 247 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D + + A A L G + K + IS + + Sbjct: 248 VI---NGDDSASRALSAASTAESSFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANI 304 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F + N L A G V E ++ L GR + + + + VDY Sbjct: 305 QSCLIGNFNILNLLAVITTACAAGYSLPAVAEQVQHLQPARGRMQRIVVDGGDVTVCVDY 364 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L +R + + VVFGCGGDRD+GKR MG+IA + AD +VT DNPR+ Sbjct: 365 AHTPDALEKALLALRAQAANDVWVVFGCGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRT 424 Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 E P I +++ GIP +R AI AI D +++AGKGHE IV Sbjct: 425 ETPACIIDDVLSGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKGHEDYQIVGTA 484 Query: 479 EKKMSVDCDIIREIL 493 ++ DC++ + L Sbjct: 485 KR-HFDDCEVSSQCL 498 >gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] Length = 482 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 152/503 (30%), Positives = 240/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ P + +I V+ DSR I G +F+A+ G + DGH +I Sbjct: 1 MRLSDLLQTIQP-------VRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ + +++ + V ++ + A+ YG + + Sbjct: 54 PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + G + + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+E Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F YN L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFD-AIRSPKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +I+ EI+ Sbjct: 460 NYQEIK-GVKHHFDDKEILNEIM 481 >gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] Length = 521 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 230/476 (48%), Gaps = 23/476 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+SDSR + G +FVA+ G DGH FI A+ +GA +++ + + I Sbjct: 36 EVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVICE------EIPSGIED 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V + R L+ A YG + I+ VTGT+GK++ + + + G+S Sbjct: 90 GVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNARGISCGY 149 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + TTP L + G V +E SSH L R+ GI+ Sbjct: 150 IGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSHALMLKRVHGIRFR 209 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTNL +H+D+H+T +AY +AK LF++ L + A++ DD + + R Sbjct: 210 AAVFTNLTPEHLDFHETMEAYASAKQLLFDQ-LTPDGFAVLNRDDPAAPFMAARVLPEKI 268 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-------SVEGKDFDFLFPLPGEFQVYNALVA 318 S+ + +I LPG F V N L A Sbjct: 269 YCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPETVVSIEVRLPGSFNVMNMLEA 328 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A + +G+D + L + V GR E VG + GG +VDYAHT ++L +L +R Sbjct: 329 ASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVDYAHTPDALFKVLSTLRD 388 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + R+IVVFGCGG+RD+ KRP MG+IA +LAD I+T DNPR EDPE I EI G+ Sbjct: 389 LKDEHSRLIVVFGCGGNRDRSKRPEMGRIASELADEVIITSDNPRDEDPEAILDEIEQGM 448 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + +R EAI A+ M+ K DVL+VAGKGHE + +G K D + + Sbjct: 449 NRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKGHEKYQEI-SGRKAFFSDREQL 503 >gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] Length = 499 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 157/514 (30%), Positives = 238/514 (46%), Gaps = 36/514 (7%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L DL+ E + + +I +V++DSR ++ G +F + G DGH F Sbjct: 1 MKQLIDLLKATPIERMEG-------NSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 A GA AI+ + S+ I+ V +TRK + + + + Sbjct: 54 ANMAAENGAAAIIAEKKID-------VASDVTIIYVADTRKAMEDIVPYFFDYPSKKMRM 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT+GK++ + I G + IG I TTP I L + L Sbjct: 107 IALTGTNGKTTTTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQ 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + VTHV +E SSH L R+ G + FTNL DH+DYH+T Y AK LF+ Sbjct: 167 MLKENVTHVCMEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKM 226 Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQ 289 + K+ A I +DD Y+ + + + V Sbjct: 227 VSDKDQIKDGKSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSS 286 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 I + K + L G F VYN + A G ++ G+D + L V GRFE + Sbjct: 287 SFKIQLGEKRYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELI 346 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VDYAHT + LE IL + I GR+I FGCGGDRD+ KRPIMG+IA + Sbjct: 347 -EEGQSFSVVVDYAHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANY 405 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQD 460 +D+ ++T DNPR+EDPE+I EI G+ + +R AI+ A+ + + QD Sbjct: 406 SDVVVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQD 465 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++++AGKGHE I+ + D + +R+ L Sbjct: 466 IVLIAGKGHEDYQILKDKTV-HFDDREEVRKALR 498 >gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] Length = 489 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 237/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I + DSR + G +F + G DGH F Sbjct: 1 MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+A+ A AIV S+ + P+++V ++R+ +++ A YG+ + + Sbjct: 54 EEAVARKAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ S ++QI +++G + IG + TTP + L + + Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NA +L Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + K A + + + +++ + Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRITAGGMAFRL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + I VDYAHT +SLE LK +R + + VV GCGGDRD+ KRP+M ++A+ AD+A Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP++I ++ G+ + +R EAIR AI + DV+++AGKGH Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET I+ N + D + R Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484 >gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] Length = 485 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 148/500 (29%), Positives = 241/500 (48%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL+ P+ + ++ + DSR + G +FVA+ G DG +I Sbjct: 1 MQLRDLLP-----------PLPITFPNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118 AIA GA AI+ + + ++ LS A R + ++ Sbjct: 50 NTAIAAGARAILAE----GSSLRYEENGGAVCVFMPGVKEQLSEIAGRFFNHPSRHATLI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV Q+ ++ G ++ IG T + + TTP + + + LS L Sbjct: 106 GVTGTNGKTSVTHLAAQLAEKLGYTAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTL 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G +++E SSH L Q R++ ++ TN+ RDH+DYH + Y +AK RLFE+ Sbjct: 166 VAEGADFIAMEVSSHALVQRRVEALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDF 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 D + G + G+ I + + + T++ EG Sbjct: 226 ELNHRVI---NLDDRYLRDWLEGASNGLSISLQGHSRANIQVSDLAFAEHGTTFTLAYEG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ F PL G F VYN + A + +A + +H L VPGR E Sbjct: 283 REAQFSTPLLGRFNVYNVVSAVAIMLAQKQSLTAIAQHCRHLSPVPGRME-AFQAGSSAL 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L+ +L+ +R G++ VFGCGGDRD+GKRP MG++A + AD +VTD Sbjct: 342 VVVDYAHTPDALQQVLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEFADRVVVTD 401 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E P++I A+I+ GI R +A+ IE DV+++AGKGHE + Sbjct: 402 DNPRTEAPQQIIADIMAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKGHEDYQV 461 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + I+++ + Sbjct: 462 IGHERIDY-NERQIVQDWIS 480 >gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 484 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 237/470 (50%), Gaps = 16/470 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR ++ G +FVA+ G+ DG FI A+ +GA +V Sbjct: 20 NIRIDSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVC-----RPCSVPVQTGGAA 74 Query: 92 ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V ++ RK L L A+ Y ++ +TGT+GK++ + + + +G + +G Sbjct: 75 VVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTGLLGT 134 Query: 150 TSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + +TTP + L LS + GV +E SSH LDQ R+ G + A Sbjct: 135 VNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSGARFAAAL 194 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL +DH+DYH +AYF+AK RLF EL ++ + ADD Y + ++ + + Sbjct: 195 LTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQLGRGVGYSV 254 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+ + +S++ K ++ PL G F N +A+G Sbjct: 255 QGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAGVQAAGLAMG 314 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + ++ L VPGR E + N +G ++VDYAHT ++LE +L+ +R R+I Sbjct: 315 LPVEA-MQGLASFSGVPGRMERI-ENDKGLNVFVDYAHTPDALENVLRALRAAGFARVIA 372 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG 443 VFGCGGDRD+ KRP+MG+ AD+A++T DNPR+EDP I A++ G +E+ Sbjct: 373 VFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMADVKPGLAQCDHVVEEP 432 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +A+ A+EM D ++VAGKGHE ++ K D + +RE+L Sbjct: 433 DRRKALAAAVEMARPGDAVLVAGKGHEDYQVIGT-TKIHFSDQETLRELL 481 >gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei VT8] gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter aquaeolei VT8] Length = 494 Score = 324 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 154/492 (31%), Positives = 243/492 (49%), Gaps = 15/492 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L+ + P + + I+ + +DSR ++ G F+A+ G + ++ QAI+ GA A Sbjct: 6 ISTLLQGIIEVPSVF-DVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 I++ S Q P++ R L A R + ++ VTGT+GK+S Sbjct: 65 ILLESEQERQCHERHGALIVPVV---GLRARLGRIADRFFEHPSRHLRVIGVTGTNGKTS 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSV 187 V ++ Q+ + +G +G + ++ TTP + + + L+ + ++G + Sbjct: 122 VTQYISQLLRETGTPCGLLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVM 181 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH LDQ R+D + + FTNL RDH+DYH + +AY AK RLF S Sbjct: 182 EVSSHALDQGRVDNLTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSVINF- 240 Query: 248 ADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD + +++ + S+ + LK+ + + + + +FD PL Sbjct: 241 -DDPFGRQLYGQLEGQCDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPL 299 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F N L A + +G+ + + +L PGR E T S G + VDYAHT Sbjct: 300 LGSFNASNVLAALATVLTLGVPVERAVSVVRELSPPPGRLERF-TGSTGKHVVVDYAHTP 358 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L L+ +R T GR+I VFGCGGDRD GKRP M K A AD IVTDDNPR+E PE Sbjct: 359 DALANALEALRPHTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPE 418 Query: 427 KIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I ++I G +R +AI A+ M N+ D++++AGKGHE + G+K Sbjct: 419 RIVSDISAGFTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKGHEAYQEI-RGQKLPF 477 Query: 484 VDCDIIREILGL 495 D + +R +L L Sbjct: 478 SDAEQVRHLLNL 489 >gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] Length = 479 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 227/501 (45%), Gaps = 34/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ + + + I +VS DSR + +F I G + DGH F Sbjct: 1 MKLSELLKDIE---------YTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+A+G I+ L + L+V +T + + YG + + + Sbjct: 52 QAALAKGVPCILCERDLGLNN----------QLLVQDTHFAFAKMCANFYGNPAKKLKLV 101 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V S ++++ G IG + I TTP K LS + Sbjct: 102 GVTGTNGKTTVTSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDM 161 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SSH LDQ RL +FTNL +DH+DYH+ + YF AK + Sbjct: 162 VEAGCEYVIIEVSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAK----- 216 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + D + + R S + + + + Sbjct: 217 LFHMCDKGVICIDDSYGRRLALEAHCSLRTFSAEDASASCFARNIEMDITGVRFEMVTGA 276 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F PG F V NAL AA +C+ +GI V+ + + GR E + T Sbjct: 277 VISRMQFGTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKGRSEIIPTGR-DFT 335 Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + DYAHT + L IL +I GR + VFGCGGDRD+ KRPIMG++ AD+ IVT Sbjct: 336 VLCDYAHTPDGLVNILSSINEYKGKGRAVAVFGCGGDRDRKKRPIMGEVVARNADLLIVT 395 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP+ I EI+ GI F+ NR EAI A++ D++++AGKGHE Sbjct: 396 SDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKGHEDY 455 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 ++ +K + +++ E L Sbjct: 456 QVLGT-QKVHFDEREVVAEAL 475 >gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 505 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 157/501 (31%), Positives = 238/501 (47%), Gaps = 15/501 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ P + ++N ++ DSR + AG +F A+ G+ DG FI Sbjct: 8 MKLEMLLSPWLTN-----KALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFI 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA AI+ + QD ++ T I+ + + + LS A R YG+ + + Sbjct: 63 DTAIQAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALY 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++ + Q G + +G T + + TT S I + + L+ L Sbjct: 123 AVTGTNGKTTISQLLAQWANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGL 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R+ + A FTNL RDH+DYH Q Y +AK LF E Sbjct: 183 VEQGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEH 242 Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + ++ A + G + +V + Sbjct: 243 DAGVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAFDS 302 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F PL G F V N L+A +A A +L +L V GR E ++ Sbjct: 303 SWGQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRMEVF-QDTDK 361 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L+ +R G++ +FGCGGDRD GKRP+M ++A LAD I+ Sbjct: 362 AMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIIL 421 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPRSEDP+ I A+++ G+ +R A R A + QD+++VAGKGHE Sbjct: 422 TDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKGHEDY 481 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D + + +L Sbjct: 482 QILADRTIHY-SDRETVAALL 501 >gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 492 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 148/504 (29%), Positives = 240/504 (47%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK +LI + F + + + +I +V+ D+R ++ G +FV I+G+ +GH Sbjct: 1 MKAIELIKPL------KSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHEL 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 +A+ +GA +V S ++ P++ V+NT K +++ A+ Y +N + Sbjct: 55 AKEAVQKGAVLVVASEPLDVE---------VPVVYVNNTMKAMAILAAAFYDYPSQNLRV 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V + I + IG + + + TTP + L K L Sbjct: 106 IGVTGTNGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLRE 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV S+E SSH L Q R+ G FTNL +DH++YH T + Y AK Sbjct: 166 MQENGVQTCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQ 225 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K AI+ DD + ++ Q + + + Sbjct: 226 LGNGYQQDKPKFAILNFDDPVGRSFEEKTA--ASVFSYGIDQSADFKATDLRITNKGTRF 283 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ E + ++ L G+F V NAL A A G++ V++ L ++ V GRFE V Sbjct: 284 NLNFEDQVYEVQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVK- 342 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L + I +G + V GCGGDRD+ KRPIM +IA +D Sbjct: 343 GEYDFAVIVDYAHTPDGLLNVLNAVNEIKTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I E++ G+ + +R EAI++AI+ D++++AGKGH Sbjct: 403 TVIFTSDNPRTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQAAPNDIVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E I+ EK D + + + Sbjct: 463 ENYQIIGT-EKIHFDDVEEAEKAI 485 >gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] Length = 485 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ + I + ++N + DSR ++ G++FVA+ G + DGH +I Sbjct: 1 MKLENMLKAVNAQQI-------IGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA IV I SN + + +T + + A+ YG + + Sbjct: 54 SKAIENGATVIVCEQ------LPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + + G + I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+ G FTN+ RDH+DYH+T + Y AK F + Sbjct: 168 ADEGCKYVFMEVSSHSVVQKRISGLTFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFDN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ A+ DD + + + + + Sbjct: 227 LPKQAFALTNLDDKNGTVMTQNTQAKVAAYSLHSLCDFKGKVLEDSFDGMLL------DI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G F N L G +G +L L L V GRF+ + +G Sbjct: 281 NNREVNVQFIGRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFD-AKRSPKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L+ I + GR +I V G GG+RD+GKRP+M K + +D I+ Sbjct: 340 AIVDYAHTPDALVNVLEAIHEVLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + I +R EAIRTA + QDV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T V G K D +++ EI Sbjct: 460 TYQDVK-GVKSHFDDKEVLDEIF 481 >gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] Length = 499 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 144/510 (28%), Positives = 231/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + + +I + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K L Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230 Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F + A++ ADD + K G + K + Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 289 IRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I G+II VFGCGGDRD KR IMG IA Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D+++ Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496 >gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 149/502 (29%), Positives = 236/502 (47%), Gaps = 12/502 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ + L + I Q I + DSR IQ G FVA+ G+ DG FI Sbjct: 1 MKITQGLPTL---LAPWMKIDDPQLNSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++ + + + + PI+ + + + LS A R Y H ++AV Sbjct: 58 ADALARGANLVLAQADEQRPHGTVSDIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++++ + Q + G + +G T + Q TT + + + L L+ Sbjct: 118 TGTNGKTTISQLITQWLELMGERAAVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAE 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG + ++E SSHGL Q R+ + IAG F+NL RDH+DYH T Q AK + Sbjct: 178 QGARYTAMEVSSHGLVQGRIKALPFIAGVFSNLSRDHLDYHGTMQE--YAKAKQSLFTEH 235 Query: 240 KESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 AI+ DD + G + + + V + Sbjct: 236 DCQQAILNVDDPVGAQWATHQWPRLVGVSLYQQPETERCLWATSVSYSEQGIHLAFDGSW 295 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L GEF N L++ +++G +L+ +L V GR E + + Sbjct: 296 GVGHLHVALIGEFNASNLLLSLATLLSLGFSKPALLDTAAQLTPVLGRMELF-SVPGKAK 354 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L +R G++ V+FGCGGDRD GKRP+M IA AD I TD Sbjct: 355 VVVDYAHTPDALEKALCALRVHCLGQLWVIFGCGGDRDTGKRPMMAAIAEQFADKIIFTD 414 Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPRSE I +++ G+ + NR +A++ A+ N D++++AGKGHE ++ Sbjct: 415 DNPRSESAHAIVQDMLAGLSHRQAHVEHNRYQALQYALAHANADDIILLAGKGHEDYQVL 474 Query: 476 TNGEKKMSVDCDIIREILGLIL 497 + D + +++LGL + Sbjct: 475 ADQTVHY-SDRESAQQLLGLTV 495 >gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 482 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 240/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA AI+ D + + V ++ + A+ YG + Sbjct: 54 PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFD-AIRSPKGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P++I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482 >gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] Length = 483 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 149/500 (29%), Positives = 238/500 (47%), Gaps = 32/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ P I + +I V+ DSR I AG +F+A+ G + DGH +I Sbjct: 3 MKLSDLLKTIQPVHITGS-------TDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D +S + V ++ + A+ YG + + Sbjct: 56 PAAIEKGAIAVLCE------DLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 110 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 170 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + ++ Sbjct: 230 -PKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEG------MLLDF 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 283 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPKGFT 341 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 342 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 401 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAI+ A + DV++VAGKGHE Sbjct: 402 TSDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDVILVAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIR 490 + G K D + ++ Sbjct: 462 DYQEIK-GVKHHFDDKEELK 480 >gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] Length = 493 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 149/495 (30%), Positives = 242/495 (48%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q+G FVAI+G+ DG FIP AI Sbjct: 1 MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++ + + I + P++ +D K LS A LY +++ VTGT+G Sbjct: 61 QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T Q+ TT + + + K LS L+ Q + Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + A +L + A Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238 Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +I DD K+ + + + ++ + + + + + Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G +L +L V GR E ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELF-QADDNAKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCHGELWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +P I +++ G+ I + +R +A+ A+E + QD++++AGKGHE I+ +G Sbjct: 418 EPALIMKDMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477 Query: 481 KMSVDCDIIREILGL 495 D + +LGL Sbjct: 478 HY-SDRESAMTLLGL 491 >gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens str. 13] gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Clostridium perfringens str. 13] Length = 484 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ GI+ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LE-GIEEFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 490 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 244/504 (48%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ + + + I + DSR ++ G +F+ I G DGH F Sbjct: 4 MDLRELLT-------HLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFA 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ +GA AI+ ++ + +T++ +++ A Y + + + + Sbjct: 57 QMAVEKGAVAILAEKPVDVEVPVVRV---------KSTKRAMAVLADAFYNQPTQKMHLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++ ++ I + + IG I + D + TTP + L K + Sbjct: 108 GVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + V +E SSH LD R+ G F+NL +DH+DYH T + Y AK Sbjct: 168 VEENVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQL 227 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A++ ADDA ++E +K + I + ++ Sbjct: 228 GNAYNHNRPKFAVLNADDAATEEYIKNTAATVITYGI--DRESDIRATNIQITNSGTTFD 285 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + L G+F VYN L A C+ GI ++++E ++ L V GRFE V Sbjct: 286 LTTPTETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVV-DA 344 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK ++ I V+ GCGGDRD+ KRPIM +IA + + Sbjct: 345 EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQ 404 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPRSEDP I ++ G+ ++ +R EAIR A+E ++ DV+V+AGKGHE Sbjct: 405 AILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVIVIAGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T I+ + D ++ R+++ Sbjct: 465 TYQIIG-KKVFDFDDREVARKMIE 487 >gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] Length = 497 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 250/499 (50%), Gaps = 16/499 (3%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +L+ K + + I + ++ +S++S + IF+ + G + DG F Sbjct: 3 KLYELLKKVP----SIIEIPTHKALNEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQ 58 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AI GA A+V+S +++ + +++V++ S A+ Y E ++ Sbjct: 59 SAIKAGAVAVVISPQAAIKFPINDLH---CVIIVEDVILTASEIATAFYSYPSEDIKMIG 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ ++ IG S + F Q + TTP L LS Sbjct: 116 VTGTNGKTTTTHLIEYFLTECKKNTALIGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E SSH L Q R+ G FTNL +DH+D+H+ + YF AK LF Sbjct: 176 IDKNEYCVIEVSSHALVQGRVKGCGFNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPE- 234 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A++ DD+Y + +++ S+ H + H++ + + G Sbjct: 235 YLQGKAVVNIDDSYGERLIQYLGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGG 294 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGR 357 +F+F PL G+F + N L A + ID V+ L + VPGR E + + Sbjct: 295 NFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDIS 354 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R SG++I VFGCGGDRD+ KR IMGKI LADI+++T Sbjct: 355 VIVDYAHTPDSLENLLKATRPFISGKVICVFGCGGDRDRSKRSIMGKICAKLADISVLTS 414 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+PE+I ++I+ G+P F NR EAI+TAI + D +++ GKGHE I Sbjct: 415 DNPRTEEPEQILSDILEGVPKNANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQI 474 Query: 475 VTNGEKKMSVDCDIIREIL 493 + EK D + +E L Sbjct: 475 LGT-EKIYFDDREQAKESL 492 >gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] Length = 482 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 240/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA AI+ D + + V ++ + A+ YG + Sbjct: 54 PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFD-AIRSPKGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P++I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482 >gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] Length = 484 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ G++ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LE-GIEEFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ FI + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] Length = 503 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 176/489 (35%), Positives = 260/489 (53%), Gaps = 8/489 (1%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I K EL + R+++ ++ DSR ++ G +F A+ G + G F+ +A+ Sbjct: 6 ITKSLAEL-GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKA 64 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA AIV A + I ++V+ + R ++ A+ +G P + AVTGT+GK Sbjct: 65 GATAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGK 124 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +SV SF++QI Q +G + IG T + + TTP + L + LS + GVTH + Sbjct: 125 TSVTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAA 184 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASSHG++Q RL+G+ L FTN +DH+DYH+T AYFNAK LF LLP++ A+I Sbjct: 185 MEASSHGIEQRRLEGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVI 244 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD ++ + A + G +L VG G + L Q + G+ + Sbjct: 245 NIDDPKGADIARVAEDRGQEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLD 304 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G FQ N L+AAGL IA G D A V L V GR + G ++VD+AHT Sbjct: 305 LIGGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRGRMQLAARRGNGASVFVDFAHT 364 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E +L+ IR GR++ + G GGDRD+ KRP+MG A AD+ IVTDDNPR+ED Sbjct: 365 PDAIETVLQAIRPHVMGRVVAIVGAGGDRDRTKRPLMGAAAARFADMVIVTDDNPRTEDA 424 Query: 426 EKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 IR ++ G E G+R EAI ++ML D L++ GKGHE+ IV + + Sbjct: 425 ATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICGKGHESGQIVGH-DV 483 Query: 481 KMSVDCDII 489 D + Sbjct: 484 LPFDDVEQA 492 >gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] Length = 498 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 253/505 (50%), Gaps = 28/505 (5%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ EL+N S + ++ I ++++DSR ++ G +F+ + G DGH ++ +A+ +G Sbjct: 2 KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A AI+ S+ + ++ V NTR + A + + ++AVTGT+G Sbjct: 62 AVAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + I +++G + IG I + TTP I L + L + VTH Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239 V +E SSH L R++G + F+NL DH+D+H+T Y NAK +LF + Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG 297 A I DD YS ++ + L + LK + + + Sbjct: 235 SNKNACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKN 294 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K++ L G F VYN + A I+ GID +++ L VPGRFE + + Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELI-DEGQEFS 353 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL R IT+G+IIVVFGCGGDRD KRPIMG+IA +DIAIVT Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413 Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 DNPR+EDP I +++ G+ + +R AI+ AIE+ D++++AGKGH Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ N + D + R +L Sbjct: 474 EDYQILKN-KTIHFDDREEARRVLR 497 >gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] Length = 484 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 170/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ G++ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] Length = 478 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 144/493 (29%), Positives = 232/493 (47%), Gaps = 26/493 (5%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +++ +++ + P + + DSR ++ G IFVA+ G DGH FI A+ Sbjct: 3 EILNGIDYKILKKFETGP-------FSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAV 55 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A++ S + + +VV N R+ L + AS Y + + V T Sbjct: 56 ENGASAVIGSKEIEVNH-------DITYIVVKNLRQKLGVIASNFYKWPQKKLEIVGITG 108 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 + +IG + TTP + L K +G+ Sbjct: 109 TNGKTTTTYLLEQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIK 168 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 ++ +E SSH L+ R++ I +FTNL +H+DYH+ + YF+AK +LF + KE+ Sbjct: 169 YLIMEVSSHALEMGRVEMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENT 228 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + + +S G + ++ + Q++ +S + Sbjct: 229 VF------NTDDFYGKRLFDEFGGISYGIESGDLNASMISHSLKTQEIELSFKEFQKKIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F VYN L A G+ I +G+ + + LEKL PGRFE + + VDYA Sbjct: 283 IKLQGKFNVYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFE-CIEAGQNFMVVVDYA 341 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT+++LE IL + I +II VFGCGGDRD KR M + A L+DI IVT DNPR+E Sbjct: 342 HTADALENILSALNEIKIEKIITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTE 401 Query: 424 DPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP KI E+ G + + + +R +AI A+ M K D++++AGKGHE I+ +K Sbjct: 402 DPVKILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKGHEDYQIIG-KDK 460 Query: 481 KMSVDCDIIREIL 493 D ++ + + Sbjct: 461 IHFDDKEVALKYI 473 >gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] Length = 1011 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 164/502 (32%), Positives = 253/502 (50%), Gaps = 43/502 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + ++SDSR + G +FVA+ G K DG +IP+AI +G A + Sbjct: 26 QPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAIGKGCLA------VVVDVDEGVDE 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N P+L+VD+ L A+ G + +A+TGT+GK++ + ++++ SG Sbjct: 80 WNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTNGKTTCSWLIEEMLVASGFRPG 139 Query: 146 QIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG + QD LTTP P+ L L ++ GVTHV +E SSH L Q RL Sbjct: 140 VIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHALQQQRL 199 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI----IYADDAYSKE 255 + FTNL RDH+DYHQ+ + YF AK +LF + L ++ A+ A+ Sbjct: 200 GSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEGCDWGG 259 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ + A + + + ++ + + + G + +F PL GE+ V N Sbjct: 260 LLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAEVNFASPLTGEYNVLNV 319 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEM 371 L AAG+ + +G+ LE L ++ VPGR E V G ++VDYAHT ++L+ Sbjct: 320 LAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAHTPDALDN 379 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+N++ +T+GR++ VFGCGGDRD+GKRP+MG++A LAD +VT DNPR+E PE I E Sbjct: 380 VLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEAPEAIIDE 439 Query: 432 IIHG--------------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+ G + G+ +R AI A + D +++AGKGHET Sbjct: 440 IVAGVEAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPGDSVLLAGKGHET 499 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ EK D L Sbjct: 500 YQIIGT-EKHFFDDRQEATNGL 520 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 94/506 (18%), Positives = 161/506 (31%), Gaps = 49/506 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L++ + L+ S ++ V +DSR ++ G IFVA+ G DGH +I A Sbjct: 520 LLHWNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAA 579 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 Q A AIV +R + V ++ + L A+ + A+TG Sbjct: 580 EQRAGAIVAE------WMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITG 633 Query: 123 TSGKSSVASFVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +SGK++V V I G + T +F L P+ L + Sbjct: 634 SSGKTTVKEMVASIFAEALQGSRTGMDAVLKTRGNFNNLVGL----PLSLLPLEAGHR-- 687 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V + + G + RL I N A A + Sbjct: 688 -LAVVEMGMNVPG-EIARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRP 745 Query: 241 ESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 E+ ++ DD + + K+ + + + + T+ +E Sbjct: 746 EAVRVVNLDDPHVRAQAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIE 805 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G P+ G V N + AA + A GI ++ + L++ + V G Sbjct: 806 GWRARVTVPVFGAHNVSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSVDKRLAVTELPGGL 865 Query: 357 RIYVD-YAHTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIMGKIALDLA 410 ++ D Y S+ L+ + R + G G + +G + L Sbjct: 866 KVVNDAYNANPASMAAGLRTVAAFGHRGCRHLAALGDMLELGAASEDLHAGIGALVASLG 925 Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEA--IR--TAIEMLNKQDVLVV 464 D +T A + N R A I A L D L++ Sbjct: 926 YDFLALTGMQATVMARAASAAGMKE--ENIRVFANPRAMADWIYPMLARGDLAAGDWLLI 983 Query: 465 AGKG----------HETVHIVTNGEK 480 KG E + N +K Sbjct: 984 --KGSRGMRMEQLLDELEQRLNNSKK 1007 >gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] Length = 484 Score = 323 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ GI+ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] Length = 512 Score = 323 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 164/495 (33%), Positives = 241/495 (48%), Gaps = 25/495 (5%) Query: 9 KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L + L + R+ I + DSR +Q G +FV I G DGH FIPQA+A G Sbjct: 15 KTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAG 74 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A AIV + + +L V + L + + + +TGT+G Sbjct: 75 ASAIVTTRE------DVEVPEGIAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNG 128 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + + I +++G IG + TTP + L L+ + +G+ + Sbjct: 129 KTTTSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDY 188 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 V +E SSH LDQ+R+ GI+ FTNL +DH+DYH+T + Y AK +LF+ + Sbjct: 189 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQ 248 Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKD 299 A++ DDA ++ A + N + + E + Sbjct: 249 GKTAVVNIDDAVGATMLAHAKCKHLTYAIEKEADL--RATDILVHANGAEFVLHHESFGE 306 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN + A G +A ID+A++ E LE VPGRFE V I Sbjct: 307 MPLKLHITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKAGQ-DFSII 365 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + +E +LK R I RII VFGCGGDRD+ KRPIMG++A +LAD+ I T DN Sbjct: 366 VDYAHTPDGVENVLKTARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSDN 425 Query: 420 PRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR+EDPE I +++ G+ I +R AI AIEM K D++V+ GKGHE Sbjct: 426 PRTEDPEFILSQVEEGVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKGHENYQ 485 Query: 474 IVTNGEKKMSVDCDI 488 I+ + + D + Sbjct: 486 ILKD-KTIHFDDKEE 499 >gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] Length = 505 Score = 323 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 155/501 (30%), Positives = 237/501 (47%), Gaps = 15/501 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + P++ E +I+ ++ DSR + AG +F A+ G+ DG FI Sbjct: 8 MKLGALLSPWLA-----IDKLPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFI 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA AI+ + + ++ I+ + + LS A R + + + Sbjct: 63 DTAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++ + Q G + +G T + TT S I + + L+ L Sbjct: 123 AVTGTNGKTTISQLLAQWANLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQL 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R+ + A FTNL RDH+DYH Q Y +AK LF E Sbjct: 183 VEQGADFAAMEVSSHGLVQGRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEH 242 Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + ++ ++ A V + G + V + Sbjct: 243 QSGIAIINADDAVGASWLIDIPNAVAVAIDPQAVVNHTGLKLWATDVQFSTQGVTIEFDS 302 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F PL G F N L+A +A A +LE KL V GR E ++ Sbjct: 303 SWGQGKFTAPLVGSFNATNLLLALATLLATNHPMADLLEKAPKLQAVIGRMEVF-QDTDK 361 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L+ +R G++ +FGCGGDRD GKRP+M ++A LAD I+ Sbjct: 362 AMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIIL 421 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPRSEDP+ I +++ G+ I +R A R A+ + QD+++VAGKGHE Sbjct: 422 TDDNPRSEDPKDIVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKGHEDY 481 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D + + +L Sbjct: 482 QILADRTIHY-SDRETVAALL 501 >gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] Length = 484 Score = 323 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 170/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ G++ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] Length = 484 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 173/503 (34%), Positives = 269/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ GI+ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + DF +PGE+ VYN+L + I + E L + + PGR E V + Sbjct: 283 LEEVE-DFSINIPGEYNVYNSLGCIICAYNLNIPMNKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] Length = 482 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 243/504 (48%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ P I + +I V+ DSR I+AG +F+A+ G + DGH +I Sbjct: 1 MKLSDLLKAIQPVQITGS-------TDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA AI+ ++ +++ + V ++ + A+ YG + + Sbjct: 54 PAAIEKGAVAILCE------EWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+E+ Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D + VM + + S+ F + + ++ Sbjct: 228 PKSAF--SLTNLDDRNGLVMTQNTRSKVYTYSLRSLSDFKG-----KVLESHFEGMLLDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G I I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TADNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + ++ I+ Sbjct: 460 NYQEIK-GVKHHFDDKEELKAIMN 482 >gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. PCC 7002] gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp. PCC 7002] Length = 499 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 247/501 (49%), Gaps = 17/501 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + I L+ PM ++ + ++S+S+ + G +F+ + G + DG F Sbjct: 2 MQLGALLKQVSA--IESLADHPM--LQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFW 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 AI GA A VVS + + ++ V + + A+ Y K ++ Sbjct: 58 QGAIEAGAIAAVVSPEALEKFPAT---KGECVIPVADPVIACAEIANLFYEKPTASLKLV 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + ++ Q + + IG + + TTP I L K + Sbjct: 115 GVTGTNGKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G TH +E SSH L Q+R+ G + FTNL +DH+DYH T + YF AK LF E Sbjct: 175 LEAGNTHAVMEVSSHALHQNRVKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEE 234 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D + + S+ +++ ++ + + Sbjct: 235 YCHGRAVV--NLDNPYGDRLAHKLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPM 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356 +F PL G+F + N + A G +A+G+D ++ L + VPGR E V + Sbjct: 293 GTVEFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDI 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R + ++I VFGCGGDRD+ KRP+MGKIA +D A+VT Sbjct: 353 SVIVDYAHTPDSLENLLKASRPFIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVT 412 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I A+++ GIP F+ + +R AI+ AI D +++AGKGHE Sbjct: 413 SDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQ 472 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ EK D + R+ LG Sbjct: 473 ILGT-EKIHFDDREEARKALG 492 >gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] Length = 482 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 149/503 (29%), Positives = 239/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P + + E+ I V+ DSR + AG +F+A+ G + DGH +I Sbjct: 1 MKLSELLKAIQP-------VQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D + + V ++ + A+ YG + + Sbjct: 54 PTAIEKGAIAVLCE------DMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-SIRSPKGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D + ++ I+ Sbjct: 460 NYQEIK-GVKHHFDDKEELKAIM 481 >gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] Length = 493 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 150/495 (30%), Positives = 242/495 (48%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q+G FVAI+G+ DG FIP AI Sbjct: 1 MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQ 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++ + + I + P++ +D K LS A LY +++ VTGT+G Sbjct: 61 QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T Q+ TT + + + K LS L+ Q + Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + A +L + A Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238 Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +I DD K+ + + + ++ + + + + + Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G +L +L V GR E ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELF-QADDNAKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCQGELWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I +++ G+ I + +R +A+ A+E + QD++++AGKGHE I+ +G Sbjct: 418 DPALIMKDMLVGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477 Query: 481 KMSVDCDIIREILGL 495 D + +LGL Sbjct: 478 HY-SDRESAMTLLGL 491 >gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] Length = 484 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ GI+ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + +F +PGE+ +YN+L + I + E L + + PGR E V Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKK 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] Length = 474 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 222/470 (47%), Gaps = 12/470 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++SDSR AG +F+A G + DG FI QAIA GA ++ + + T+ Sbjct: 11 FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V R S A + YG ++ VTGT+GK+S + ++ Q + I Sbjct: 71 P----VTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVI 126 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G TTP PI L L+ G ++E SSHGLDQ R++GI Sbjct: 127 GTLGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKV 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TNL RDH+DYH +Y A + AI+ DDA+ + ++ G Sbjct: 187 AVLTNLTRDHLDYHGDMASY--ADAKRKLFHFGGVQAAILNQDDAFGRALLSELKAKGKH 244 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VLS G G + + + + + L G F N L +A Sbjct: 245 VLSYGLSGGDVCGHDLHFDAEGLHMQVHTPQGEAMVHAKLVGRFNASNLLAVLATLLASE 304 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + L + PGR + +G + + VDYAH+ ++LE L +R +I Sbjct: 305 VALEDAVRVLADIRPAPGRMQQLGGGGQPL-VVVDYAHSPDALEKALNALREQAKANLIC 363 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445 VFGCGGDRD+GKRP+M ++A LAD IVT DNPR+EDP++I AE++ G+ G + +R Sbjct: 364 VFGCGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGLHGPAQVEPDR 423 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +AI AI DV+++AGKGHE V +G + D ++ ++LG+ Sbjct: 424 EQAITQAIRAAQAGDVVLIAGKGHEDYQEV-SGVRYPFNDAEVAAKVLGV 472 >gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus halodurans C-125] gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus halodurans C-125] Length = 486 Score = 323 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 145/474 (30%), Positives = 230/474 (48%), Gaps = 20/474 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 I+ + DSR + G +F I G DGH + QA++ GA A+V L Sbjct: 21 NPDIHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P++VV ++R+ ++ A++ YG+ ++ VTGT+GK+++ +++I Q G + Sbjct: 74 --SVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMT 131 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I ++ + TTP + L + + + GVT +E SSH L R+ G Sbjct: 132 GLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCD 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 F+NL DH+DYH T + Y AK + + A++ ADD S + + Sbjct: 192 FDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADFAEMTI 251 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + V ++ + + L G+F VYN L AA Sbjct: 252 AQVVTYGIENEADF--QAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLAAAAA 309 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G+ + + LE++ V GRFE V + + VDYAHT +SLE +LK + + Sbjct: 310 AYVSGVPLQEIKKSLEEVKGVAGRFETVKHDQ-PFTVIVDYAHTPDSLENVLKTVGELAK 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439 G + VV GCGGDRD+ KRP+M +IA A+ AI T DNPRSE+P I ++ G G + Sbjct: 369 GDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMDILRDMEQGAKGDSY 428 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAI AIE+ + D++V+AGKGHET + D + ++ + Sbjct: 429 LMIEDRKEAIFKAIELAKEDDIIVIAGKGHETYQQFRDRTID-FDDRIVAQQAI 481 >gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] Length = 482 Score = 323 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 241/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ P + + E+ I V+ DSR + AG +F+A+ G + DGH +I Sbjct: 1 MKLTELLKAIQP-------VQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI QGA A++ D + + V ++ + A+ YG + + Sbjct: 54 PTAIEQGAIAVLCE------DMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP P+ L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ + +G Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFD-SIRSPKGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + +GR +I V G GG+RD+GKRPIM K + L+D I+ Sbjct: 340 AIVDYAHTPDALVNVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R AI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D ++++EI+ Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIMN 482 >gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] Length = 490 Score = 323 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 156/489 (31%), Positives = 254/489 (51%), Gaps = 17/489 (3%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N + +E KI + DSR I+ ++F A+ G+ DGH FI +AI GA+ I+V Sbjct: 7 NISHTVLHKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEE 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + + + + V++ RK L + AS YG +P++ + + G +G + + Sbjct: 67 NIEVSKYDKY--EDISFVFVEDVRKHLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSYI 123 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + ++ + I + TTP + L K ++ +GV + +E SSH L+ Sbjct: 124 LENILEKTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVSSHALE 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ +K + FTNL +DH+D+H+T + YFNAK ++F L + DD Y K Sbjct: 184 IGRVNMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFSM-LRNSGTGTVNIDDGYGKR 242 Query: 256 VMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ N + +S+ + ++ + ++ ++ I K++ L GE+ + Sbjct: 243 IIEEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYNL 302 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L A +A+GI+ ++E L+K+ VPGRFE V N RI VDYAHT + L I Sbjct: 303 YNVLGCAASALALGIEIEKIIEKLQKMPSVPGRFETVKNNK-NARIVVDYAHTDDGLTNI 361 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 K +R IT R+I VFG GGDRD KRP M K A + +D I+T DNPR+E+P I E+ Sbjct: 362 GKTLRKITDNRVITVFGAGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEV 421 Query: 433 IHGI-------PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 G+ + +R +AI+ A+ EM + D L++AGKGHET I+ EK+ Sbjct: 422 EAGLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKGHETYQIIG-KEKRHFD 480 Query: 485 DCDIIREIL 493 D +I ++ L Sbjct: 481 DREIAKKYL 489 >gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] Length = 498 Score = 323 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 253/505 (50%), Gaps = 28/505 (5%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ EL+N S + ++ I ++++DSR ++ G +F+ + G DGH ++ +A+ +G Sbjct: 2 KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A AI+ S+ + ++ V NTR + A + + ++AVTGT+G Sbjct: 62 AIAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + I +++G + IG I + TTP I L + L + VTH Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239 V +E SSH L R++G + F+NL DH+D+H+T Y NAK +LF + Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG 297 A I DD YS ++ + L + LK + + + Sbjct: 235 PNKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKN 294 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K++ L G F VYN + A ++ GID +++ L VPGRFE + + Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELI-DEGQEFS 353 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL R IT+G+IIVVFGCGGDRD KRPIMG+IA +DIAIVT Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413 Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 DNPR+EDP I +++ G+ + +R AI+ AIE+ D++++AGKGH Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ N + D + R +L Sbjct: 474 EDYQILKN-KTIHFDDREEARRVLR 497 >gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium sp. BNC1] gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chelativorans sp. BNC1] Length = 483 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 228/494 (46%), Positives = 308/494 (62%), Gaps = 17/494 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E + L + E I+ ++SDSR + AG +F A+ G+K Sbjct: 1 MKL--------GEFADILPLSGSIAGETTISGLASDSRRVNAGDLFFALQGSK------- 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+A + + P++ D+ R L+L ++RLYG P ++AV Sbjct: 46 ADGAAYAADAAGRGAVAIIARPGTVGDVGVPVIEADDPRHVLALASARLYGAQPATMVAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +++GL++ IG T ++ + LTTP P+ L K L L+ Sbjct: 106 TGTSGKTSVAAFTRQIWEKAGLAAASIGTTGVVAPGRDEYGELTTPDPVSLHKLLRELAD 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y +KMRLF+ LLP Sbjct: 166 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLP 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S+ K A AG ++L+VG +G F+ +K+V ++Q+ I EG Sbjct: 226 KGAPAVIFADDPWSEPTEKVALAAGLQLLTVGRRGTFLTIKRVEHERHRQRTEIEHEGMI 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +D + PL G+FQV NALVAAGL I+ G+ + + LE L GR E GT G +IY Sbjct: 286 YDIMLPLAGDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGRLELTGTTEDGAQIY 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L+ +R T+GR+IVVFGCGGDRD GKRPIMG+IA LAD+ IVTDDN Sbjct: 346 VDYAHKPDALENVLQAVRPFTTGRVIVVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDN 405 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE P +IR I+ +P E G+R EAIRTA+ MLN D L+VAGKGHE + G Sbjct: 406 PRSEVPAEIRRAILEAVPEATEIGDRREAIRTAVAMLNSGDTLIVAGKGHEIGQEIA-GT 464 Query: 480 KKMSVDCDIIREIL 493 K D + +R L Sbjct: 465 KLPFSDHEEVRRAL 478 >gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 2336] gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336] Length = 495 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 156/496 (31%), Positives = 242/496 (48%), Gaps = 13/496 (2%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K L + R+ ++ E+ DSR + G +FVAI G++ DG FI QAI GA Sbjct: 2 KKLTALWDIDEQLDSVHRDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A++ + Q + + N P++ K LS A R Y + + + VTGT+GK Sbjct: 62 SAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++A + Q Q G +S +G ++ TT S I + +L QG Sbjct: 122 TTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFA 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSHGL QHR++ + AG FTNL RDH+DYH T + Y AK RLF EL + Sbjct: 182 AIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKILN 241 Query: 246 IYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + + + + CR ++ + + + + Sbjct: 242 VDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNG 301 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G F V N L+ +++G D +L + +L V GR E + + + V Sbjct: 302 ILSSPLIGGFNVSNLLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEML-SAKHKATVIV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L++ G++ +FGCGGDRD+GKRP+M IA AD IVTDDNP Sbjct: 361 DYAHTPDALENALQSAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNP 420 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+E+PE+I +I+ G R +AI+TA++ + DV+++AGKGHE I+ Sbjct: 421 RTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT 480 Query: 478 GEKKMSVDCDIIREIL 493 K D +I+++ Sbjct: 481 -TKYHFSDQEIVKKYF 495 >gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] Length = 484 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E+I E K+ + D+R I+ G FV + G K DGH FI Sbjct: 1 MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA+ ++V S+Q+ + I+ V +TRK L++ +S +G + I+ Sbjct: 54 GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I +++G + IG + I + D TTP L + + Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV + +E SSH L+ R+ GI+ G FTNL RDH+D+H+T + Y+NAK +LFE Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + +II DD Y ++K G + + ++ + N + ++ Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVN 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353 +E + +F +PGE+ +YN+L + I + E L + + PGR E V + Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I +DYAHT + LE IL ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIA Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+T DNPRSE+P I +I+ F+ + NR EAIR A+ M + DV+V+AGKGHET Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + E + +++ +IL Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482 >gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] Length = 493 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 159/489 (32%), Positives = 243/489 (49%), Gaps = 17/489 (3%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L F +Q + ++ DSR + G +FVAI G++ DG FI QA+AQGA A+V Sbjct: 9 LRPFGIQAPALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDG 68 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 S P + + + LS A Y + + + + +TGT+GKS+ A V Sbjct: 69 EFIPPSTP----VPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVAN 124 Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G + +G + TT S + + L+ L +QG V++E SSHGL Sbjct: 125 WRTLLGGKAGVMGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 QHR+ + A FTNL RDH+DYH T +AY AK L ES A+I DD Sbjct: 185 VQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAK--EQLLQLVDESNAVINRDDELGA 242 Query: 255 EVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ + G+ + +++ + I+ + PL G F Sbjct: 243 KWLEKYPAAVAFSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFN 302 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L A G+ + +G D +L KL V GR E G VDYAHT ++LE Sbjct: 303 VSNVLAAMGVMLVLGYDFNELLATAPKLQPVTGRMECFGGGDTPL-AVVDYAHTPDALEK 361 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M +A AD I+TDDNPR+E+P +I A+ Sbjct: 362 ALQALRVHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEEPARIMAD 421 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R++AI AI +KQD+++VAGKGHE I+ +K+ D + Sbjct: 422 MVAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKGHEDYQIIGT-DKRHYSDRET 480 Query: 489 IREILGLIL 497 + L +L Sbjct: 481 VAAALHTLL 489 >gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] Length = 491 Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 152/468 (32%), Positives = 231/468 (49%), Gaps = 10/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR + G IFVA+ G DG FIP A+ GA IV + A + + Sbjct: 26 IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVC--LPGGAEAEAARAAGCTV 83 Query: 93 LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + D+ R+ L A G P +L VTGT+GK++ A ++ + +G +G Sbjct: 84 VHHDDPREALWRLAEARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTV 143 Query: 151 STISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S + LTTP P+ + L+ ++ GV +E SSH L+Q R+ G+ SF Sbjct: 144 SYRWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCGVPFAGASF 203 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 +NL +DH+D+HQ ++YF AK RLF EL + I DD + + +++ A L Sbjct: 204 SNLTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRALSFGLQ 263 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + ++ + L + L++ Sbjct: 264 KALPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQALALELGLM 323 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 L HLE H V GR E V N+R ++VDYAHT ++L +LK +R RI+ VFG Sbjct: 324 PDDLRHLEGFHGVCGRLERVP-NARKLHVFVDYAHTPDALVNVLKALRGAGFKRIVTVFG 382 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 CGG+RD+ KRPIMG+ +D+A++T DNPR EDPE I +++ G+ + + +R Sbjct: 383 CGGNRDRTKRPIMGEAVARYSDVAVLTSDNPRFEDPEAILKDVLPGLREDREVVVEVDRR 442 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +A A+EML D L++AGKGHE I+ G K D +++RE+LG Sbjct: 443 KATAKAVEMLGPDDALLIAGKGHEDYQIIQ-GTKHHYSDQEVVRELLG 489 >gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] Length = 484 Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 250/504 (49%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ +I E+I ++ ++I+ ++ DSR I+ G IF+A+ G + DGH + Sbjct: 1 MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI +GA +V + T+ N + V++T + A+ YG + Sbjct: 53 IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + I + I A TTP PI L K L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + + + + + Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G + VL L L V GRF+ + + +G Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + I +R EAIRTA + +DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++R+I Sbjct: 459 ENYQEIK-GVKHHFDDKEVLRDIF 481 >gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 494 Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 156/498 (31%), Positives = 247/498 (49%), Gaps = 11/498 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ + L + I W + + + DSR ++ G F+AI+G+ DG ++I Sbjct: 1 MTLEINLANL---LCPFVDISSYSWSKIGVKHLELDSRKVEVGSTFIAILGHNVDGRVYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI GA A++ + +R N PI+ VD+ LS A R++ ++AV Sbjct: 58 NEAIKSGANAVIAQACPLNTHGKTEVRDNVPIVFVDDLGIHLSSLAKRIFPLKNNKLIAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++ + Q + + +G T + TT + I + + L L Sbjct: 118 TGTNGKTTITQLIAQWFELVSCHAAVLGTTGNGFIDDLKPATNTTGNAIEVQQTLHALEQ 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG + ++E SSHGL Q R+ ++ G F+NL RDH+DYH T + Y AK LF Sbjct: 178 QGAKYTALEVSSHGLSQGRVKALEFEVGIFSNLSRDHLDYHGTMENYEQAKFSLFN--QH 235 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AII DD K + +A L + + K V N + D Sbjct: 236 CCKQAIINIDDPVGKRWLGYLDSAVAVSLHPQDFPRSVWAKCVNYSVNGISLAFDGMFGD 295 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F N L+A + +G+D ++ L V GR E + + ++ Sbjct: 296 GEIEVALIGGFNANNVLIAMTTLLCMGVDKKQLIATAPLLRPVIGRMELFTASKQ-AKVI 354 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L ++ + G + V+FGCGGDRD GKRP+MG+I+ +LAD I+TDDN Sbjct: 355 VDYAHTPDALEKALHALKDHSGGALWVIFGCGGDRDVGKRPMMGRISEELADRVIITDDN 414 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PRSEDP I +I G+ + + +R A++ AIE +D++++AGKGHE +++ Sbjct: 415 PRSEDPTLIVKDIQAGMSRPESVMVEHDRRAALKYAIEHSRPEDIILMAGKGHEDYQVLS 474 Query: 477 NGEKKMSVDCDIIREILG 494 + D + E+LG Sbjct: 475 D-RIIACSDREFALELLG 491 >gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] Length = 495 Score = 322 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 162/498 (32%), Positives = 251/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + I+ + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA ++ + + R P++ + + LS A RLYG H ++ VTG Sbjct: 60 AIAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G S +G T + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKSAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + S+E SSHGL Q R+ + +AG F+NL RDH+DYH T AY AK LF E Sbjct: 180 AQYTSLETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ H G +L+ + I ++V + + + Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L +L V GR E + V Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ + +G++ +FGCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALHVHCTGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + NR +A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMLAGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii 37] gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas ingrahamii 37] Length = 509 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 223/502 (44%), Gaps = 23/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DLI + +++ ++ DSR I G++F+A+ G + DG LFI Sbjct: 8 MLLDDLIKPWLSDY----------DPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +++ GA A++ + + TI+S P+ V LS A R + + + ++ Sbjct: 58 EKSLKMGACAVLSETKNRSEHGQVTIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVI 117 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 AVTGT+GK+++AS + G S Q+G + L TT I + L Sbjct: 118 AVTGTNGKTTIASLLADSFMLLGKQSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCY 177 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q + +E SSHGLDQ R+ + + FTNL RDH+DYH + + Y AK LFE+ Sbjct: 178 QQQRAEYTIMEVSSHGLDQGRVSAVPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKY 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 K+ ADD + + + G ++ + ++ + V Sbjct: 238 PLKQRIIN--ADDPIGAQWLTDFPDAISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFH 295 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P G+F V N + + V KL VPGR E + Sbjct: 296 SSWGKGVVSAPFYGDFNVSNLAAVLTQLLVENVSIEHVQTIFPKLSTVPGRMEQYYFAEK 355 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAHT ++LE +L ++ SGR+I VFGCGGDRD GKRP M IA A Sbjct: 356 NITFVVDYAHTPDALEKVLLALQKHKSSGRLICVFGCGGDRDTGKRPQMANIAESYAQKV 415 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ DDNPR+E+ + I +I+ G +R +A+ + D++++AGKGHE Sbjct: 416 VLVDDNPRTENAQSIIEDILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKGHE 475 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 I D + + + Sbjct: 476 DYQIFGTQRVHY-SDRECLASL 496 >gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] Length = 493 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 243/505 (48%), Gaps = 25/505 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + I+ ++ DSR + G +FVAI G+ DG FI Sbjct: 2 MQLSELLLPW-----------CDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118 AI QGA A++ + + + N ++ +D+ LS A Y K ++ Sbjct: 51 SSAIEQGAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++++ + Q + +G T S + TT SPI + + L+ L Sbjct: 111 GITGTNGKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++E SSHGL Q R++ + A FTNL RDH+DYH Y AK LF Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293 PK S DD + +K +A L+ + V +++I Sbjct: 231 RPKNSIIN--GDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSI 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S + + F PL G F N LVA +++G D + + +L+ V GR E T+ Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATD- 347 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 ++ VDYAHT ++L+ L+ +R G++ +FGCGGDRD GKRPIM I AD Sbjct: 348 NKAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPIMASIVEQQADAI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I++DDNPRSE+P I +++ G+ +R EA + A+ N+ D++++AGKGHE Sbjct: 408 ILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 ++ + D + + +LGL Sbjct: 468 DYQVLADKTVHY-SDRETAQTLLGL 491 >gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii str. Madrid E] gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii] gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia prowazekii] gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii Rp22] Length = 480 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 250/483 (51%), Gaps = 23/483 (4%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 ++ +I +S++S+ ++ +F AI G DG+ FI A+ GA ++ + + Sbjct: 4 NLNQLFKNHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNT 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++ V++ K L Y K P+N+++VTGT+GKSSV S++ Q Sbjct: 64 AIDK--------VIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSL 115 Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + IG + + LTT + K L+ + +++ EASSHGL Sbjct: 116 LKKKAAFIGTIGLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGL 175 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI+ +D + Sbjct: 176 EQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIE 235 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V HN + ++VG +G + K+ Q + ++ + G FQ N Sbjct: 236 FVKDYLHNNNVKFITVGKKGDL-QITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AA G ++E L K+ + GR E G I+VDY+HT +SLE L Sbjct: 295 LLIAALTLYYTGFKFDEIIEALAKVKPIKGRMER----IDGTNIFVDYSHTPDSLEKALI 350 Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 ++ I ++ V+FGCGGDRD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEI Sbjct: 351 ELKNIKLHGSKLSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEI 410 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I GI + E +R EAI+ I L + D+L++AGKGHET I+ + +K D +++R Sbjct: 411 IRGIGTATYTEIASRAEAIKYGINNLKQDDILLIAGKGHETYQIIGD-KKLPFDDSEVVR 469 Query: 491 EIL 493 + L Sbjct: 470 KYL 472 >gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] Length = 482 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ P + + +I ++ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNKLLKAIQP-------VQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D + + V ++ A+ YG + + Sbjct: 54 PTAIEKGAVAVLCE------DMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + ++ Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSNFKGRVLESHFEGML------LDF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVR-SPKGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D +I++EI Sbjct: 460 NYQEIK-GVKHHFDDKEILKEIF 481 >gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] Length = 489 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ + + + I + DSRH+ G +F + G DGH F Sbjct: 1 MKLQTLLSRL-------PGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ +GA AIV S+ + ++R+ +++ A YG+ + + Sbjct: 54 EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++Q+ +++G + IG I + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NA +L Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + K A + + + +++ + Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVM-AEQIEMTPGGMAFQL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F VYN L A C+A G A + E L + VPGRFE V Sbjct: 284 CTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETV-DEG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +S+E LK +R + VV GCGGDRD+ KRP+M + A+ AD+A Sbjct: 343 QNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPRSEDP +I ++ G+ ++ +R EAIR AI + DV+++AGKGH Sbjct: 403 VFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET I+ + + D + R Sbjct: 463 ETYQIIGD-DVIDFDDRAVARAA 484 >gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2; AltName: Full=Meso-A2pm-adding enzyme 2; AltName: Full=Meso-diaminopimelate-adding enzyme 2; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum ATCC 824] gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum EA 2018] Length = 483 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 155/504 (30%), Positives = 249/504 (49%), Gaps = 31/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ +LI I +S +S+ ++ ++FV+I G + DGH FI Sbjct: 1 MKLKQLLQNIDYDLIKG-------DININIEGISYNSKKVKQNYVFVSIKGARFDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA A+++ + NT ++ V N++ L+ + Y + N++ Sbjct: 54 KEAAQNGAAAVIIDEDFHDS------IENTTLVKVKNSKVALACLCNLFYEEPSRELNLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKAL 174 VTGT+GK++V +++ + + G S+ IG + TTP + L + L Sbjct: 108 GVTGTNGKTTVIHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQIL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +G + +E +S L +HR+D G FTNL +DH+D H T + Y N K++LF Sbjct: 168 RDFIDKGAKNAVMEVTSSALMKHRVDYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + +I DD + E++++ + + N + Sbjct: 228 KM----CPVGVINLDDNIAGEIIEKGTCEFFTYGVLTNADLT--ASDMVYKPNSVSFNVH 281 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G +PGEF VYN L A G + +GID +L+ + + V GR E N Sbjct: 282 YKGISSKVKVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLE-TINNPL 340 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I +DYAHT +SLE +L R +T+GRII VFGCGGDRD+ KR +MG L+D I Sbjct: 341 NKNIIIDYAHTPDSLEKLLIMAREMTNGRIITVFGCGGDRDKSKRGLMGMAVGILSDYCI 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR E PE I +I G+ + + +R AI+ IE+L ++D+L++AGKGHE Sbjct: 401 ITSDNPRHEKPEDIIRDIERGMQTINSSYEKITDRRCAIKRGIEILKEEDILIIAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 I+ + K D +++ E+LG Sbjct: 461 DYQIIGDN-KVHFDDREVVNELLG 483 >gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] Length = 502 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 251/499 (50%), Gaps = 31/499 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+ L++ E+I P I + DSR +QA +FVA+ G + DGH +I Sbjct: 3 NLKQLLH--HIEVIQTRGNAPES-----IENIHFDSRKVQANDLFVAVKGTQADGHQYIG 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QA+A GA+ +V + F + + + V N+ K L AS Y + ++ Sbjct: 56 QAVALGAKVVVCET------FPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT+GK++ + + Q+ ++ G + + I A RLTTP P+ L + ++ + Sbjct: 110 ITGTNGKTTTVTLLHQLFRKFGYRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMV 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G TH +E SSH + Q R+ G+ +FTN+ DH+D+H+T Y NAK + F++ L Sbjct: 170 KAGCTHCFMEVSSHAVVQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQ-L 228 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + A+I ADD +++ R ++ F ++ + +E Sbjct: 229 PPTAFALINADDKRGMVMLQNTVAKTQRTFALKQFADFKARVVESSLQG-----LFMEID 283 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + F + G F YN L + + +G D+ L L L VPGRFE + G Sbjct: 284 DVEVWFQMIGYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPGRFEKI-IGESGATG 342 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDY+HT ++LE +L+ I + +II V GCGG+RD KRPIM +IA +D+ I T Sbjct: 343 VVDYSHTPDALENVLQTIFELRQSGQKIITVVGCGGNRDASKRPIMAQIACQYSDVVIFT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+E P +I ++ G+ P +R +AIR A E+ KQD+++VAGKGHET Sbjct: 403 SDNPRNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIR 490 + G + D +++ Sbjct: 463 YQEIA-GVRHPFDDRLVLK 480 >gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi ATCC BAA-1116] gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 150/495 (30%), Positives = 241/495 (48%), Gaps = 9/495 (1%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + ++E+ DSR +Q+G FVAI+G+ DG FIP AI Sbjct: 1 MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++ + + I + P++ +D K LS A LY +++ VTGT+G Sbjct: 61 QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ + Q G + +G T Q+ TT + + + K LS L+ Q + Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG FTNL RDH+DYH T + A +L + A Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238 Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +I DD K+ + + + ++ + + + + + Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G +L +L V GR E N ++ VDYA Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQAN-DNAKVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G + + GCGGDRD GKRP+M +IA L D ++TDDNPRSE Sbjct: 358 HTPDALEKALQALRVHCHGELWAILGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I ++ G+ I + +R +A+ A+E + QD++++AGKGHE I+ +G Sbjct: 418 DPALIMKGMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477 Query: 481 KMSVDCDIIREILGL 495 D + +LGL Sbjct: 478 HY-SDRESAMTLLGL 491 >gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 483 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 239/502 (47%), Gaps = 33/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGW-IFVAIVGNKEDGHL 58 M+L L+ L+ ++ E +++ + DSR I+ +F+AI G K DGH Sbjct: 1 MELSKLL--------TGLNYVCVKGNEHQEVDHMIYDSR-IKTNAGLFIAIEGFKTDGHQ 51 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 FI AIA GA+AI+V +++ + I+ V++TR ++L A+ YG + Sbjct: 52 FIEAAIANGAKAILVQKDVEIKE-------DVTIIKVEDTRLAMALVANNAYGHPSKQFE 104 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175 + VTGT+GK+S+ + QI + IG + I S TTP + L Sbjct: 105 LVGVTGTNGKTSITFLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFK 164 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V +E SSH L R+ G G FTNL +DH+D+HQT + Y AK +LF Sbjct: 165 KMVESQVDTTLMEVSSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFT 224 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 I+ D Y E++K A V + T+ Sbjct: 225 M----CETGIVNKDSDYINEIIKGATCNLVTYAIDKDADY--KATNVIITAAGVEYTLVC 278 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + F P+PG+F VYN L A+ I +L L+ VPGR + + +G Sbjct: 279 DQGTFKVDVPIPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFK-SIKG 337 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT + LE +L I+ G II VFGCGGDRD+ KRPIMGKIA +D + Sbjct: 338 YSVLVDYAHTPDGLENVLSTIKEFAQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVFI 397 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR+EDP I E+ G+ +++ +R AI A+ +DV+++AGKGHE Sbjct: 398 TSDNPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKGHEN 457 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D +I+ L Sbjct: 458 YQILKD-RIIHFDDSEIVNAYL 478 >gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] Length = 498 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 152/508 (29%), Positives = 238/508 (46%), Gaps = 37/508 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+D+ YK + ++ ++ DSR G +F+A+ G DGH +I Sbjct: 7 MQLKDIFYKIPL-------LATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI QGA AI+ + A + + V N+ + + L A+ Y + + ++ Sbjct: 60 ETAIQQGATAILCE------EIPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SVA+ + ++ + G + + I TTP I + L+ + Sbjct: 114 GVTGTNGKTSVATLLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKM 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G THV +E SSH + Q R+ G+ + G FTN+ DH+D+H T Y AK F + Sbjct: 174 LAHGCTHVFMEVSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKK-GFFDQ 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ DD +++ + +++ Sbjct: 233 LPASAFALTNVDDKRGLVMLQNTVARKETYSLQTLASFKGKILADSLFG------LNMLI 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + F L G+F YN L G I +G D VL L + PGRFE V + Sbjct: 287 DEREVWFKLIGQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPGRFEQV-VSDDKIV 345 Query: 358 IYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 VDYAHT ++L+ +L+ I + +II V GCGG+RD KRPIM IA L+ Sbjct: 346 GIVDYAHTPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLS 405 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + I+T DNPR+EDP I ++ G+ I +R EAIR A+E+ D+++VA Sbjct: 406 NRVILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVA 465 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHET + G K D ++R+ Sbjct: 466 GKGHETYQEIK-GIKYDFDDRVVLRDAF 492 >gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] Length = 457 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 243/472 (51%), Gaps = 25/472 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ +S+ + G+IFVAI G DGH F+ +A+ +GA + V ++D Sbjct: 2 EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDP------ 55 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ V +TRK L YG+ E ++ VTGT+GK++ ++ + + +G+ Sbjct: 56 --RIVKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGL 113 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + TTP P+ L + G V E SSH L Q R+ G K Sbjct: 114 IGTIYYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKF 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH + YF+AK+ LF + + S ADD Y K ++ Sbjct: 174 FTTIFTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSVIN--ADDPYGKRIVSVVGKRA 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G + ++ + EGK + F L GEFQ YN A Sbjct: 232 RTYGKEGDL----RITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFL 287 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 GID +V E ++ + V PGRFE + G + VDYAHT ++LE +L+ R IT GR+ Sbjct: 288 RGIDPQVVEEGVKDVRV-PGRFETYRKD--GKTVIVDYAHTPDALEKLLRTARGITRGRL 344 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441 +VVFG GG+RD+ KRP+MG++A + AD+ ++T DNPR EDP I +I+ GI + Sbjct: 345 LVVFGAGGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGISQKNKVLV 404 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AIR A+EM + DV+V+AGKGHE + G + D ++REIL Sbjct: 405 EPDREKAIRLAVEMAKEGDVVVIAGKGHEDYQEIK-GVRYPFSDSAVVREIL 455 >gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium wasabiae WPP163] gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae WPP163] Length = 495 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 248/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + E + E++ DSR AG +FVAIVG+K DG +IP Sbjct: 5 NLRDLLAPWVQD-----------TPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D + P++ + N + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIVAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G A TT S + + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL Q+R+ + A FTNL RDH+DYH ++Y AK LF E Sbjct: 174 EQGATFAAMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + +A + G +G+++ ++ N + Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +++G ++ +L V GR E + Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSE+P+ I +I+ G+ R EA+ +AI + DV+++AGKGHE Sbjct: 411 VTDDNPRSEEPQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494 >gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] Length = 494 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 144/482 (29%), Positives = 231/482 (47%), Gaps = 9/482 (1%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + + ++ DSR + G IFVA+VG+ DG FI +A+A G A++ + Sbjct: 16 DFSSPELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAE 75 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 P++ ++N LS A R+Y ++ VTGT+GK+++ + Q Sbjct: 76 KPHGLIEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLD 135 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G S +G T + TT S I + + LS L+++ + ++E SSHGL Q Sbjct: 136 LVGQRSAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQG 195 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ + G FTNL RDH+DYH T + A + K A+I DD K M Sbjct: 196 RVKALDFEVGVFTNLSRDHLDYHGTMEE--YALAKKSLFTQHKCKHAVINVDDEVGKAWM 253 Query: 258 KRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 NA + + + V Q++ PL G+F N L Sbjct: 254 SDLSNAIAVSLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA +++GID ++++ +L V GR E ++ VDYAHT ++LE L + Sbjct: 314 VAFATLLSLGIDKQILVDTAPQLQPVIGRMELF-QVPNKAKVVVDYAHTPDALEKALAAL 372 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R SG++ +FGCGGDRD GKRP+M A AD I++DDNPRSE+P I +++ G+ Sbjct: 373 RVHCSGKLWAIFGCGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKDMLAGL 432 Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +A++ A+E D++++AGKGHE ++ + D + ++L Sbjct: 433 SKPEAAFVEHDRYQAVKFALEQAGSDDIILLAGKGHEDYQVLKDKTVHY-SDRESALQLL 491 Query: 494 GL 495 G+ Sbjct: 492 GI 493 >gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 500 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 140/510 (27%), Positives = 230/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + +I + DSR I +G +F+ + G DG Sbjct: 9 KLKELANLLLIK-------ETIGDMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 H F+ A+ GA A++V +++ P ++V + R +++ AS Y Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYSYPSNE 110 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 ++ +TGT+GK++ + +++I G + +G I S + T L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--- 230 L + + + +E +S GL R+ G FTNL +DH+DYH T + Y + K Sbjct: 171 LQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLL 230 Query: 231 --MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + + AI+ ADD + K G + K + Sbjct: 231 FSRLGNDFSATDKKIAILNADDPSVEYFKKVTSAEVITYGINN--GADVQAKSITLSSKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q +S + + L G F VYNAL + GI + + L + + GR E Sbjct: 289 IQFLVSSFNGEIEINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSHVKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAH+ ++LE +L I + +II VFGCGGDRD KRPIMG+IA Sbjct: 349 I-DENQDFLVIVDYAHSPDALENVLSTISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGG 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G + + +R AI AI+M + D+++ Sbjct: 408 YSDFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D +I R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEIARQAI 496 >gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D4] gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides dorei 5_1_36/D4] Length = 484 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 250/504 (49%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ +I E+I ++ ++I+ ++ DSR I+ G IF+A+ G + DGH + Sbjct: 1 MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI +GA +V + T+ N + V++T + A+ YG + Sbjct: 53 IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + I + I A TTP PI L K L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + + + + + Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G + VL L L V GRF+ + + +G Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + I +R EAIRTA + +DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++R+I Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481 >gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 510 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 162/509 (31%), Positives = 257/509 (50%), Gaps = 31/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + +I + +++ VS DSR I+ + F ++ G+ DG +I Sbjct: 1 MKLRELLSDESAFVIGD--------EDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AIA GA I+ S Y ++ +V+ + +F+SLF ++ Y NI+ Sbjct: 53 AEAIANGASVIITDSKYDT--------NDVAQVVIKDIFRFMSLFGAKFYNYPDRELNIM 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V ++ I SG+ IG + + TTP + + + + + Sbjct: 105 GITGTNGKTTVTYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDI 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 S+ G+ ++ +E SSH L R+ GI+ FTNL R+H+D+H+ YF AK LF+E Sbjct: 165 SNNGIKYLVMEVSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKEL 224 Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVT 292 + AII DD Y ++++K +A + ++ + + Sbjct: 225 GAGKKNNKKCAIINVDDEYGRKLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFN 284 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + K G VYNAL A + I +E L VPGR E V T Sbjct: 285 LVFCNKRARIRIKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTI 344 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G I VDYAHT ++LE +L+ ++ + RII+VFGCGGDRD+ KRP+MGKIA++++D Sbjct: 345 GLGFEIVVDYAHTDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDF 404 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466 VT DNPR+EDP +I +I GI + +R AI+ I M +K D++++AG Sbjct: 405 VFVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAG 464 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHET I + G K D I + + L Sbjct: 465 KGHETYQITSGG-KVHFNDVKIAEKYIDL 492 >gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] Length = 493 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 149/508 (29%), Positives = 230/508 (45%), Gaps = 30/508 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ + + I + DSR I+ G +F A G K DG FI Sbjct: 1 MHLSQLLRGMNISIAT----------DPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI +GA AI+V + + S+ PI+ + + L A+R YG ++ Sbjct: 51 KDAIKKGAAAILVEPDENYTIHLKS--SSIPIIALHHLTSQLGSLAARFYGYPSRYLPVI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+S F+ Q+ S IG + +LTTP I L + L+ Sbjct: 109 GITGTNGKTSCTHFLADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +Q V +E SSH L Q RL+G + + TNL RDH+DYH+T AY AK + Sbjct: 169 RAQHAQTVVMEVSSHRLAQKRLNGTEFSVAALTNLTRDHLDYHKTMDAY--AKAKRSFFE 226 Query: 238 LPKESPAIIYADDAYSKEVMKRA-------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 LP ++ ADD Y++ + + R + + +KK Q Sbjct: 227 LPGVQHIVLNADDPYAQLWLTEFEKQLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQ 286 Query: 291 VTISVEGKDFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 I D N L+ + ++ A + + L +L GR + Sbjct: 287 AEIDTPWGDVFIENQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTF 346 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VDYAHT ++L+ +L+ +R+ G++ +FGCGGDRD+GKRP+M IA + Sbjct: 347 RVKG-KAIVVVDYAHTPDALQQVLQALRSHCRGQLYCLFGCGGDRDKGKRPLMAAIAEEG 405 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD IVT+DNPR EDP +I +I G G + R +AI A++ D++++AG Sbjct: 406 ADHIIVTNDNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAG 465 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHE+ + +G D ++ L Sbjct: 466 KGHESYQSI-HGINYPFDDAVEVQHFLN 492 >gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 500 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 149/501 (29%), Positives = 246/501 (49%), Gaps = 23/501 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +++ +S ++ IN +S DSR I G +FVA+ G DGH F+ AI GA A Sbjct: 3 ISKILENVSAKKSYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 +VV+S+ + + + ++ V++T K L A+ YG+ E N++ +TGT+GK++ Sbjct: 63 VVVNSSSDVPCLAKY--PDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A+ + ++ G + I ++ TTP+ + + L+ + G + + Sbjct: 121 TATLLYKLFLGMGFGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFM 180 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH Q R+ G+ FTNL +DH+DYH+T Y +AK LF + LP+ + A+ Sbjct: 181 EVSSHATVQQRIAGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKK-LFFDHLPQTAFALTN 239 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFP 305 ADD +++ + + + + + ++ +GK+ + Sbjct: 240 ADDRNGNFMLQNTKAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVST 299 Query: 306 LPGEFQVYNAL-----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L AA LC GID+ +L L +L V GRFE + G V Sbjct: 300 PFVGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA--GISAIV 357 Query: 361 DYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 DYAHT ++L+ +L I + R++ V GCGGDRD+ KRPIM + A +D ++T D Sbjct: 358 DYAHTPDALKNVLSTINDVKSPDSRVVTVVGCGGDRDKTKRPIMAQEAAAQSDTLVLTSD 417 Query: 419 NPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 NPR+EDP+ I ++ G+ I +R +AI+TA ++ D+++VAGKGHE Sbjct: 418 NPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKGHENYQ 477 Query: 474 IVTNGEKKMSVDCDIIREILG 494 IV EK+ D + + L Sbjct: 478 IVG-KEKRHFDDKEEVIASLS 497 >gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] Length = 482 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 152/503 (30%), Positives = 239/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P I + E +I V+ DSR +QAG +F+A+ G + DGH +I Sbjct: 1 MILSELLKAIQP-------IQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D + + V ++ + + A+ Y + + Sbjct: 54 PAAIEKGAVAVLCE------DVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I A TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +E SSH + Q R+ G++ G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADSGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G F N L G + +G VL L L V GRF+ V + +G Sbjct: 281 NNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVR-SPKGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G+II V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V G K D + ++ I+ Sbjct: 460 NYQEVK-GVKHHFDDKEELKAIM 481 >gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 499 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 143/510 (28%), Positives = 232/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + + +I + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLIK-------ETIGDMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEGAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G ++S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K L Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLL 230 Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F ++ A++ ADD + K K + Sbjct: 231 FARLGNDLSTTEKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNINLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +S + + L G F VYNAL A + I GI + + L L + GR E Sbjct: 289 IRFLVSSFNGEIEISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D+++ Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496 >gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] Length = 484 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ +I E+I S ++I+ ++ DSR I+ G IFVA+ G + DGH + Sbjct: 1 MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI +GA +V + T+ N + V++T + A+ YG + Sbjct: 53 IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + I + I A TTP PI L K L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + + + + + Sbjct: 226 GLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G + VL L L V GRF+ + + +G Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + I +R EAIRTA + +DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++R+I Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481 >gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] Length = 495 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 161/498 (32%), Positives = 249/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + I+ + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA ++ + R P++ + + LS A RLYG H ++ VTG Sbjct: 60 AIAQGANIVLAEADAHHAHGQVEFREGVPVIYLAELGQHLSELAGRLYGGHQNQLIGVTG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T AY AK LF E Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ H G +L + I ++V + + + Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGVSLLVQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L +L V GR E + V Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ +FGCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + NR A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMLAGLTHPERAHIEHNRFHAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806] Length = 496 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 161/500 (32%), Positives = 235/500 (47%), Gaps = 16/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ + I +I +S++S Q G +F+ + G + DG F Sbjct: 1 MKLQELLAN----ITPVSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ GA + + ++VV + + A++ Y ++ Sbjct: 57 RSALETGAL---AALISPAAAAKFPPPEDACVIVVADLVTATAAIAAKFYHYPALTLKLI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++G+ + G T Q+ TTP L +L+ Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S G +E SSH L Q R+ G FTNL RDH+DYH + YF AK +LF Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDAY + + SV + K + + + Sbjct: 234 -YLQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQSTGVEGVMVTPQ 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 + F PL G++ + N L A + G+D V+ + + VPGR E + Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMERVSIAPDQDI 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT Sbjct: 353 SVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E PE+I +II GIP +R AI TAI+ D +++AGKGHE Sbjct: 413 SDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQ 472 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R L Sbjct: 473 ILGT-EKIHFDDREQARAAL 491 >gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] Length = 505 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 162/503 (32%), Positives = 243/503 (48%), Gaps = 19/503 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + P++ E +I+ ++ DSR + +G +F A+ G+ DG +I Sbjct: 8 MKLGALLSPWLA-----IDKLPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYI 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA AI+ + + ++ I+ + + LS A R + + + Sbjct: 63 ETAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++ + Q +G + +G T + + TT S I + + LS L Sbjct: 123 AVTGTNGKTTISQLLAQWANLAGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQL 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R+ I A FTNL RDH+DYH Q Y NAK LF E Sbjct: 183 VEQGADFTAMEVSSHGLVQGRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTEH 242 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + AII ADDA +K NA + G + V + Sbjct: 243 QSRM--AIINADDAVGASWLKDIPNAVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEF 300 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 F PL G F N L+A +A A +LE +L V GR E ++ Sbjct: 301 DSSWGLGKFTAPLVGSFNATNLLLALATLLATNHSMADLLEKAPQLQAVIGRMEVF-QDT 359 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L+ +R G++ +FGCGGDRD GKRP+M +IA L+D Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCI 419 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+TDDNPRSEDP I +++ G+ +R A R A+ ++QD+++VAGKGHE Sbjct: 420 ILTDDNPRSEDPNGIVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKGHE 479 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + D + + +L Sbjct: 480 DYQILADRTIHY-SDRETVAALL 501 >gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] Length = 495 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 161/498 (32%), Positives = 251/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + I+ + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA ++ + + R P++ + + LS A RLYG H ++ VTG Sbjct: 60 AIAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T AY AK LF E Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + K+ H G +L+ + I ++V + + + Sbjct: 238 QRAIINVDDAVGAQWGKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L +L V GR E + V Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREHKAKM-VV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ +FGCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + NR +A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMLVGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] Length = 533 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 141/498 (28%), Positives = 230/498 (46%), Gaps = 19/498 (3%) Query: 7 IYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + +LI L + + + +R++ + +DSR + G +F AI G + DG+ +I +A+ Sbjct: 38 LNPNVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVD 97 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA AI+ + V++ R L++ A YG+ E L +TG +G Sbjct: 98 RGAVAIITEQDLGSHFP-------IDYIQVEDVRMALAVVAREFYGRPDER-LGLTGVTG 149 Query: 126 KSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + + + G IG I + TTP + + LS + G Sbjct: 150 TNGKTTVSMLVQHLIGGDDKVGLIGTIRYDIGPRTLPSFRTTPESVDVYALLSQMEDGGC 209 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E SSHG+DQ R+ G+ + F NL +DHIDYH++ +AY+ AK LF Sbjct: 210 KDAVMEVSSHGVDQKRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVP 269 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD 301 + + D + R L+ G + +KV + + + + G Sbjct: 270 HSAVVNMDCAYGRRLLTELPGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQAT 329 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + PL G + V N L A A G + +++ + VPGR E + + + VD Sbjct: 330 VVSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELIH-EKQPYNVLVD 388 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L+ +R IT G++IVVFGCGGDRD+ KR +M K L+ AD T DNPR Sbjct: 389 YAHTDDALKNATGMLREITPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNPR 448 Query: 422 SEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 SE E+I ++ G + +R AI A++ D +++AGKGHE+ + Sbjct: 449 SESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKGHESFQEF-D 507 Query: 478 GEKKMSVDCDIIREILGL 495 G D + RE++ L Sbjct: 508 GSVVPFDDRQVARELIQL 525 >gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 500 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 141/510 (27%), Positives = 230/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + +I + DSR I +G +F+ + G DG Sbjct: 9 KLKELADSLLIK-------DTIGNMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V ++Q P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIQ---------IPKIIVKDARYAMAIIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 I + +TGT+GK++ + +++I G + +G + + T P L + Sbjct: 111 IKLIGITGTNGKTTTSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--- 230 L + + + +E +S GL R+ G FTNL +DH+DYH T + Y K Sbjct: 171 LQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLL 230 Query: 231 --MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + + AI+ ADD + K G + K + Sbjct: 231 FSRLGNDFSTTDKKIAILNADDPSVEYFKKVTSAEVITYGIHN--GADVQAKNITLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q +S + + L G F VYNAL A + + I + + L + + GR E Sbjct: 289 IQFLVSTFNGEKEINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I + G+II VFGCGGDRD KR IMG+IA Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G+ + + +R AI AI M + D+++ Sbjct: 408 YSDFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + + + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDNKEKARQAI 496 >gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 495 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 148/502 (29%), Positives = 231/502 (46%), Gaps = 31/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ L+ P ++ +I +S D+R + G +FVA+ G K DG L+I Sbjct: 1 MKLWQLLAGV------PLTGEPYS-QDMEITSISYDTRTLLPGALFVALPGAKTDGSLYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+A+GA A+V + + R+ L+L A +G + + Sbjct: 54 DEALAKGAAAVVCRRRPQREGV---------FFTTPDPRRALALLAENWFGHPGREMTLI 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS----TISSFAQDNRLTTPSPIYLAKALSY 176 T + G Q+G + TTP + + L Sbjct: 105 GVTGTNGKTTTTFLIKEMLEGALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLRE 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ G THV +E SSH L QHR++G+ +FTNL +DH+DYH T + Y +AK R Sbjct: 165 MADSGCTHVVMEVSSHALVQHRVEGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKER---- 220 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L + + D + + S + K + + + Sbjct: 221 -LFHQCRRAVLNLDDEAGRWYRERLACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAR 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + P+PG F +YNAL A + + +G+ + L V GR E V + Sbjct: 280 EQIQRVFLPIPGGFTIYNALCALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPTA-Y 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH+ N+LE IL R T+GR+I +FGCGGDRD+ KRPIMG + +LAD+A+VT Sbjct: 339 TVLIDYAHSPNALENILLTARDFTAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDPE I +I+ G+ G + +R +AI A+ DV+V+AGKGHET Sbjct: 399 SDNPRTEDPEDIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAGKGHETY 458 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + G + + +I+ + Sbjct: 459 QEIQ-GVQYPMDEREIVAQYFS 479 >gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 499 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 172/496 (34%), Positives = 249/496 (50%), Gaps = 21/496 (4%) Query: 10 DFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +F +LIN L++ + + ++ DSR Q G++FVAI G DGH F+P A+ +GA Sbjct: 2 NFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 A+++ + + VV +TRK L+L ASR YG+ ++ VTGT+GK Sbjct: 62 AAVLLQQKVPVPE-------GVAWAVVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + + + IG I R TTP + L + L ++ GVT V Sbjct: 115 TTTTHLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L R+ G+ A FTNL +DH+D+H + YF AK +LF L +E+ AI Sbjct: 175 VLEVSSHALRLSRVHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTG-LGEEAAAI 233 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I DD Y ++ GCR+ +Q + V + + + E Sbjct: 234 INRDDPYGVRLLDLTR--GCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALR 291 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYNAL AA + + G + L ++ VPGRFE V + +DYAHT Sbjct: 292 LSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFERVDQGQE-YTVIIDYAHT 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE +L+ R I GR+I VFGCGGDRD+ KRP+MG I+ AD +++T DNPR+EDP Sbjct: 351 PDGLENLLRAAREIAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRTEDP 410 Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I +I G G+ +R EAIR A E DV+++AGKGHE I+ Sbjct: 411 LAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKGHEDYQIIGTKRL 470 Query: 481 KMSVDCDIIREILGLI 496 K D IL + Sbjct: 471 K-FDDRREAAAILAAM 485 >gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] Length = 504 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 146/503 (29%), Positives = 236/503 (46%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL++L+Y P + + + +I +S DSR + G +F A G K DGH +I Sbjct: 13 KLKNLLYALEP-------LEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIG 65 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AI + A AIV S + + L V + R+ L AS YG +++ + Sbjct: 66 EAIEKRARAIVCS-----EIPRLYVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + + + ++ + IG ++ + + T P L L + Sbjct: 121 VTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMV 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G VE SSH LDQ R++G G +TN +DH+DYH T + Y +K + Sbjct: 181 QAGCRAAVVEVSSHALDQGRIEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIR 240 Query: 239 ---PKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + ++ DD + + + R V S G + + + + + Sbjct: 241 GGKEGDGGVVLNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVL 300 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 GK F L G F V NAL++ G + +GI + LE VPGR E + Sbjct: 301 EWAGKVFKVKSSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKY-YSK 359 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G + +DYAH+ ++L +L ++ R+I+V GCGGDRD+ KRP M K+A + ADI Sbjct: 360 DGLLVVIDYAHSEDALSKLLHTLKCFQPKRLILVVGCGGDRDRLKRPRMAKVASENADIV 419 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPRSE PE+I ++ G+ +R EAI+ A+ + + D++ +AGKGHE Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAGKGHE 479 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G D ++++ L Sbjct: 480 DYQEIG-GVFYPFSDRLVVQKHL 501 >gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 491 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 149/508 (29%), Positives = 229/508 (45%), Gaps = 31/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ +I++++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLSELMEAIPV-------YTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GA AI+ T+ P++ V ++++ +++ A YG + ++ Sbjct: 54 KRAEELGAVAIIAEK---------TVDVTVPVIYVRDSKRAMAMLADYFYGSPTQALKLV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + + Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRNM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 165 LMNGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A+I DDA S + + + Sbjct: 225 GNSYHTSNPKVAVINIDDAESSRMQTATAAHVITFGIKKQADF--RASNIKIASHGSTFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +F + G F VYN L A A+ I + +E + V GRFE V Sbjct: 283 LRTPVGNFTLKIKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSAG 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDY+HT +SL +L+ I R+ V+ GCGGDRD+GKRP M KIA+D A Sbjct: 343 Q-DFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYATN 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGH Sbjct: 402 PIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKGH 461 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497 E I+ + E D R + L Sbjct: 462 EDYQIIGD-EVIDFDDRVEARIAIEKKL 488 >gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 482 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 243/470 (51%), Gaps = 17/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR ++ G +FVA+ G+ DG LFIP A+++GA IV + S P Sbjct: 20 ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVC-----RHNEVEYCGSAIP- 73 Query: 93 LVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VVD+ R L A Y G I+ VTGT+GK+++ ++ + + G + IG Sbjct: 74 IVVDDPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTI 133 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + F+++ LTTP + L L+ + V +E SSH LDQ R+ GI F Sbjct: 134 AYRWPGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGVIF 193 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH+ + YF+AK RLF E K + D+ + +++ K Sbjct: 194 TNLTQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPEIIGFGFK 253 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGI 327 +L ++ + + + KD + PL G N L + + +G+ Sbjct: 254 NKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLAVQAISLQLGL 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 EK VPGR E + N + I+VDYAHT ++L +L +R + RII V Sbjct: 314 APEDFCC-FEKFTGVPGRLERI-VNKKQLDIFVDYAHTPDALINVLSALRDVGFKRIITV 371 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 FGCGG+RD+ KRP+MGK L+D+A++T DNPR+EDPE I A+++ G+ I + + Sbjct: 372 FGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLKKAKQIITEPD 431 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AIR AIE+++ D L+VAGKGHE + K D +IR+ILG Sbjct: 432 REKAIRQAIELVSPGDALLVAGKGHECTQQIGF-MKYPFSDQSVIRKILG 480 >gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] Length = 494 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 160/492 (32%), Positives = 246/492 (50%), Gaps = 15/492 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L+ ++ P + + I+ + +DSR ++AG FVA+ G + +I QAI+ GA Sbjct: 6 LSTLLQGIAPVPSVF-DVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATV 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 I++ SA + + I+ V R L A R + + + + VTGT+GK+S Sbjct: 65 ILLESAQPDECYE---HEGVLIVPVTALRAHLGKIADRFFEHPSQRLRLIGVTGTNGKTS 121 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ ++ + Q +G IG + Q+ TTP + + + LS + +QG ++ Sbjct: 122 VSHYIATLLQETGTPCGVIGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAM 181 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L+Q R+D + + FTNL RDH+DYH + AY AK RLF + A+I Sbjct: 182 EVSSHALEQGRVDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLF--HREELHFAVIN 239 Query: 248 ADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD + +++ ++ RV + L + + ++ F+ + Sbjct: 240 FDDPFGRQLYEKLDGKCDRVRYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSARV 299 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L A +++G+ V + +E+L PGR E S R+ VDYAHT Sbjct: 300 LGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPFA-GSNDVRVVVDYAHTP 358 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L L +R GR+ VFGCGGDRD GKRP M + A AD+ IVTDDNPRSEDP+ Sbjct: 359 DALNSALAALRPHVGGRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDPD 418 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I+ G +R EAIR AI D+++VAGKGHE V G++ Sbjct: 419 AITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKGHEAWQEVA-GQRFPF 477 Query: 484 VDCDIIREILGL 495 D + +R L L Sbjct: 478 SDAEQVRHALSL 489 >gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] Length = 487 Score = 320 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 244/501 (48%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + +N + DSR + +FVAI G + DGH FI + Sbjct: 4 LKDILYKVTLESVTG-------NPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A QGA AI+ + + +T + L++ AS Y E ++ + Sbjct: 57 AEEQGAIAIICEQ------MPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++A+ + Q+ ++G + + + TTP + + K L+ ++ Sbjct: 111 TGTNGKTTIATLLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNE 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV + +E SSHG+ Q R +G+ G FTNL DH+DYH+T Y + K F + LP Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKK-SFFDNLP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + A+ DD + +++ + + + + ++ D Sbjct: 230 KTAFALSNIDDKNGQVMLQNTRAKKVTYALKSFADYRAQILENQFTG------LLLKVND 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F YN L +G+ L++L +L V GRF+ +++ Sbjct: 284 QEVWVKLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQ-YMISAKKITAI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I I + I V GCGGDRD+ KRP MGKIA L+ + T Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGCGGDRDRTKRPKMGKIAAALSTKVVFTS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSEDP+ I EI G+ + +R +AI+ A +M + D++++AGKGHET Sbjct: 403 DNPRSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V NGE+ D I++E+L Sbjct: 463 QEV-NGERTDFDDFKIVKELL 482 >gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] Length = 495 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 243/503 (48%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + +++ DSR +G +FVA+ G++ DG FIP Sbjct: 5 NLRDLLGPWVP-----------GAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A+V + D P++ + + LS A R Y + E + Sbjct: 54 QAIAQGVAAVVAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q G +S +G TT S + + L+ L+ Sbjct: 114 VTGTNGKTTTTQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A FTNL RDH+DYH Q+Y +AK LF E Sbjct: 174 EKGASLTAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AI+ ADD + + R +A + G G+++ V N + S Sbjct: 234 VGQ--AILNADDEVGRRWLARLPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + PL G F V N ++A +++ A ++ +L V GR E + Sbjct: 292 SSWGNGEINSPLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP+ I +I+ G+ R +A+ I D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ N D + +LG Sbjct: 471 YQIIGNRRLDY-SDRATVAALLG 492 >gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] Length = 484 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ +I E+I S ++I+ ++ DSR I+ G IFVA+ G + DGH + Sbjct: 1 MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI +GA +V + T+ N + V++T + A+ YG + Sbjct: 53 IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + I + I A TTP PI L K L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + + + + + Sbjct: 226 GLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G + VL L L V GRF+ + + +G Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSLR-SPKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + I +R EAIRTA + +DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++R+I Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481 >gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 499 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 144/510 (28%), Positives = 230/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + KI + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K L Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230 Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F + A++ ADD + K G + K + Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +S + L G F VYNAL A + + GI + + L L + GR E Sbjct: 289 IRFLVSSFNGQIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D+++ Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496 >gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora ATCC BAA-2158] Length = 495 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 158/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +FVAI G+ DG FIP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + + D P++ + + LS A R + + + + Sbjct: 54 QAIAQGVAAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A +FTNL RDH+DYH Y +AK LF E Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + +++ +A + G G+++ KV V + Sbjct: 234 VGQ--AIINADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D L G F V N LVA +++ + + +L V GR E + Sbjct: 292 SSWGDGHIDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPR E+P I +I+ G+ R +A+ + + D+++VAGKGHE Sbjct: 411 ITDDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ + D D + +LG++ Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494 >gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 499 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 149/496 (30%), Positives = 225/496 (45%), Gaps = 21/496 (4%) Query: 9 KDFPELINQL------SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 K EL+ L S Q + I+ + DSR + +G +F + G DGH F Sbjct: 2 KKINELVEDLRSSGMVSAIVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVA 61 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+ GA A++ ++ + PI++ + R L AS + E+ ++ V Sbjct: 62 AVKSGAAALLCE------HIPDGVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GKS+ ++ I + G T + + TTP + LS + Sbjct: 116 TGTNGKSTTTYMIRSIMRGRGKVGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRS 175 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +E SSHGL Q RL G FTNL +H+D+H + YF K LF + + Sbjct: 176 SCNGCVMETSSHGLAQGRLSGCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKY 235 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I DD Y K +++ + S + + +++EG+ Sbjct: 236 NCKKIFNVDDPYGKRLLRECSGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVN 295 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G + V NAL AA C +IG + LE + VPGR E RG V Sbjct: 296 RVRLPLIGRYNVSNALAAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGC-AIV 354 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++L +L R I GR+I VFG GG+R +G R MG+IA AD ++T DNP Sbjct: 355 DYAHTPDALSNLLSAAREICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNP 414 Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R EDP I +I+ G+ + +R +AI A++M + DV+V++GKG E ++ Sbjct: 415 RGEDPLSIVEDILEGVHKVDGNSYDVIIDRKDAIYRALDMSREGDVVVISGKGPENYILI 474 Query: 476 TNGEKKMSVDCDIIRE 491 G+K D + IR Sbjct: 475 K-GKKTPYSDSESIRN 489 >gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] Length = 489 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 233/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ + + + I + DSRH+ G +F + G DGH F Sbjct: 1 MKLQTLLSRL-------PGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ +GA AIV S+ + ++R+ +++ A YG+ + + Sbjct: 54 EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++Q+ +++G IG I + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NA +L Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + K A + + + +++ + Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVM-AEQIEMTPGGMAFQL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F VYN L A C+A G A + E L + VPGRFE V Sbjct: 284 CTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETV-DEG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +S+E LK +R + VV GCGGDRD+ KRP+M + A+ AD+A Sbjct: 343 QNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPRSEDP +I ++ G+ ++ +R EAIR AI + DV+++AGKGH Sbjct: 403 VFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET I+ + + D + R Sbjct: 463 ETYQIIGD-DVIDFDDRAVARAA 484 >gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 499 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 144/510 (28%), Positives = 232/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + KI + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +Q + +E +S GL R+ G FTNL +DH+DYH+T Y + K L Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLL 230 Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F + A++ ADD + K G + K + Sbjct: 231 FARLGNDLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 289 IRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNPRSEDP+ I +I G + + +R AI AI M + D+++ Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496 >gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 484 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 229/494 (46%), Positives = 310/494 (62%), Gaps = 16/494 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL L + + + ++ +SSDSR ++AG +F A+ G K DG ++ Sbjct: 1 MKLRDL--------AGILPVEGIASVDLEVTGISSDSRQVKAGVVFFALAGTKADGAVYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A ++A S P+L VD+ R L+ A+R +GK PE ++AV Sbjct: 53 ED------AAARGAAAIVAGKGSTIAGLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +++G ++ IG T ++ D LTTP P+ L + L L+ Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELAD 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ LLP Sbjct: 167 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S A AG VL+VG G F+ LK+V ++Q+ + +G Sbjct: 227 KGAPAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDFLRLKRVEHERHRQRAEVEADGVL 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQ+ NALV+AGL I+ G A L LEKL PGR + VGT G +Y Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGAPVY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE + + E Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGKGHEEGQTIGS-E 465 Query: 480 KKMSVDCDIIREIL 493 D + +R L Sbjct: 466 TLHFSDHEEVRAAL 479 >gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] Length = 489 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 206/494 (41%), Positives = 289/494 (58%), Gaps = 12/494 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ P I +++DSR I+ G++F A+ G DG F Sbjct: 1 MLLSNVAAGQI---------VPAAGSTVSITGLTADSRAIKPGFLFAALKGTHVDGADFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A++ + + + + + + DN R+ +L A+R +G PE ++AV Sbjct: 52 AKAVGAGAVAVLCERDAADR-LAQELSKDVVLWPSDNPRRDFALMAARFHGAQPEVMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGTSGK+SVA FV+QI Q +G +S +G T+++ Q LTTP P+ L L+ LS Sbjct: 111 TGTSGKTSVAHFVRQIFQAAGHASASLGTIGTVTADGQSYGGLTTPDPVSLHAELARLSK 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH ++EASSHGLDQHRLDG++L+A FTNLGRDH+DYH T + Y AK+RLF +LL Sbjct: 171 EGITHTALEASSHGLDQHRLDGVRLVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLL 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +P ++ + Y+ V+ A G V SVG G+ I L K+ Q++ + G+ Sbjct: 231 KGAPVVVEPSEPYADRVIAVAQERGLPVFSVGEAGENIRLAKLTPTAGGQELVVEAGGQT 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L PL G FQV NALVAAGLCI G+ + L +L PGR EF G + GG +Y Sbjct: 291 TTVLLPLIGRFQVSNALVAAGLCICAGVAPDEAIAALAELKGAPGRLEFAGRSQTGGTVY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH ++LE L +R SG++ VV G GGDRD GKR IMG+++ AD+ IVTDDN Sbjct: 351 IDYAHKPDALENALAALRPFASGQLSVVIGAGGDRDPGKREIMGRVSQVGADLVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR+EDP IR ++ G PG +E G+R EAIR + L D+L VAGKGHET I+ Sbjct: 411 PRTEDPATIRKAVLSGAPGALEIGDRREAIREGVRRLKSGDILCVAGKGHETGQIIG-QT 469 Query: 480 KKMSVDCDIIREIL 493 D + + E L Sbjct: 470 VHPFSDHEAVAEAL 483 >gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halanaerobium praevalens DSM 2228] Length = 486 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 146/500 (29%), Positives = 243/500 (48%), Gaps = 25/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E+ +++I+E+ DSR I+ G +F+AI G K DGH +I Sbjct: 1 MQLNKILKNINYEI-------KAGNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 QAI GA AI++ + + L V+N+R+ +S+ A + ++ Sbjct: 54 SQAIENGATAIIIEKELEV------YEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A + +I Q+ + G + I S + TTP + L + + + Sbjct: 108 GITGTNGKTTTAYLLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G+ + +E SSH LD +R++ I A FTNL +H+DYHQ+ Y Sbjct: 168 KKKGIKYGVMEVSSHALDLYRVESIDFEAAIFTNLSPEHLDYHQSLDNYR-EVKSRLFSQ 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L AII ADD S+ + K++ + + T Sbjct: 227 LKPNKYAIINADDPNSEYIKKKSEAQNLSYSLDTKSADLYTTEFKLKQTGLEYKTGGKLV 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F L G F +YN+L + +GI+ ++ + L VPGRFE + + Sbjct: 287 ANF--KLNLGGLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPGRFEIIDQGQ-KFQ 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +++E ILK I ++I++FGCGGDRD+ KRP+M +A AD I+++ Sbjct: 344 LIVDYAHTPDAMENILKAALNIKKNKLIILFGCGGDRDRSKRPLMAALAEKYADSIIISN 403 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSE P KI EI G + +R + I+ AIE+ K D++++ G+GHE Sbjct: 404 DNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAIELAKKDDLVLLLGRGHEKYQ 463 Query: 474 IVTNGEKKMSVDCDIIREIL 493 ++ + ++ D + + L Sbjct: 464 VIKERKIEL-DDRQVAIQAL 482 >gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] Length = 489 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 161/502 (32%), Positives = 240/502 (47%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+++L+ P ++ I + DSR + G +F I G DGH + Sbjct: 2 MKIRELLDHISP-------CRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA +GA A + + + L+V ++R+ ++ A+R Y + + + Sbjct: 55 AQAADRGAVAFLTEEE---------LPVDGTQLIVRDSRRAMAQLAARFYNYPSDRMTMI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV F+Q + +R+G + IG T Q + TTP L K L+ + Sbjct: 106 GVTGTNGKTSVTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 G V++E SSH L R+ G FTNL +DH+DYHQT Y AK LF + Sbjct: 166 YLAGAEAVTMEVSSHALHLGRVHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQL 225 Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A+I DD+Y+ ++ + + + + + + T Sbjct: 226 GSGGETDAYKRAVINVDDSYADIMLGASAVPVITYGI--EKPCDVRAEDLEVSPEGIRFT 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + + + L G F VYNAL A AIGI+ L +L V GRFE V Sbjct: 284 IRLNQQSYPVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERV-ET 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT + LE +++ + T + VVFGCGGDRD+ KRP+MGK+A DLAD Sbjct: 343 DAPFHVIVDYAHTPDGLENVIRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADH 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPRSE+PE I +I+ G+ + +R AI AI + +V+V+AGKGHE Sbjct: 403 VILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKGHE 462 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T I + D + E Sbjct: 463 TYQITGDVTLD-FDDRKVSLEA 483 >gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] Length = 488 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 147/493 (29%), Positives = 233/493 (47%), Gaps = 16/493 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ D + + + ++ + K+ V+ D+R + G +F+AIVG DGH FIPQAIA Sbjct: 1 MLASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 +GA+ I+ + P++ V +T + ++ A + YG + ++ VTGT Sbjct: 61 KGAQMIIAQEPVE---------TTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGT 111 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++V ++++ G + IG + TTP + K L+ + V Sbjct: 112 NGKTTVTHLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANV 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 VS+E SS L Q R+ GI FTN DH+ YH+T Y AK LF ++ S Sbjct: 172 KTVSMEVSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFS 231 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + + I+ + + + + V + Sbjct: 232 GKTAVMNIDDPVGREFIDYTTSNILTYGIKHQADIYADHIKITIHGTEFDLHVFDEVKHV 291 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L GEF VYN+L A G A G A +++ L ++ V GRF+ V +N+ G + VDY Sbjct: 292 KTHLIGEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNT-GVSVIVDY 350 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + L +L+ + + GCGGDRD KRP M KIA+D + AI+T+DNPR+ Sbjct: 351 AHTPDGLLNVLETLNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDNPRT 410 Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 EDP KI +++ GI NR EAI+ A+ D +++AGKGHE I+ K Sbjct: 411 EDPHKIMDDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKGHEDYQIIG-KTK 469 Query: 481 KMSVDCDIIREIL 493 D + + L Sbjct: 470 HHFDDYEEAEKAL 482 >gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] Length = 523 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 151/502 (30%), Positives = 241/502 (48%), Gaps = 22/502 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L+ K+F +L+ + +I+ ++ DSR + G +F A+ G K DG+ F+ Sbjct: 31 KLSSLLGKEFEKLLKG-------QPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVD 83 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 +AI++GA A++ S A + + L VDN R L+ + Y ++ ++ Sbjct: 84 EAISRGAVAVISSQARRFR------SAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVG 137 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT+GK++VA V+QI G +G + TTP L LS + Sbjct: 138 ITGTNGKTTVAYLVKQILANLGQRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMR 197 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E SSHG+DQ R+ G+ G+F NL RDH+DYHQ ++Y+ K R F Sbjct: 198 DFECRGAVMEVSSHGIDQFRVSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGES 257 Query: 239 PK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD Y K ++ + +G ++ + + Sbjct: 258 GPLPKVAVVNIDDPYGKRLVSEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPL 317 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 DF L G++ V N L A +C +G++ +E L+ +PGR + V Sbjct: 318 GDFAVKTSLVGDYNVSNTLAALTICSGLGLNIENCIEDLDSFPGIPGRMQKVEAGQA-AT 376 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L+ L ++ +T G++ VVFGCGG+RD+GKRP M K+A LAD A T Sbjct: 377 VLVDYAHTEDALQNALSMLQGVTVGKLRVVFGCGGNRDRGKRPAMTKVANTLADEAWATS 436 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E E I A++ G+ +R AI A+E + D L++AGKGHE+ Sbjct: 437 DNPRNEQVEDIFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKGHESFQE 496 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 D + E++ + Sbjct: 497 YGE-TVVPFDDRKVAIELIENM 517 >gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] Length = 505 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 163/522 (31%), Positives = 250/522 (47%), Gaps = 46/522 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + +I + DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRQLLACLTAPKVTGDDA-------AEITSLCYDSRQVRPGALFFALRGVKSDGTEFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ GA A+V ++ + + V + R+ +SL A+ YG ++ Sbjct: 54 ESAVKGGAVAVVADRPCAV--------AGVTCIEVPDPRRAMSLMAALFYGVPTAGIPLV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I +++G+ + +G S + + TTP + L + L L Sbjct: 106 GITGTNGKTTTTYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRDL 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG +E SSH L+Q R DG FTNL RDH+DYH ++Y+ +K+RLF +L Sbjct: 166 VDQGAKGAVMEVSSHSLEQRRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDL 225 Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L A++ DD Y + A + G + +V + + Sbjct: 226 LAPTGEKPLRRAVVNLDDPYGARIAAEAAAPVLTYAAAGPADLT--VAEVEFSVHGIRCR 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + D L G F +YN L A G +A+GI + + VPGR E V N Sbjct: 284 LNSPVGEIDIDSDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERVP-N 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 +G + VDYAHT ++LE +L I + + RII +FGCGGDRD+GKRP+MG+IA +D+ Sbjct: 343 DQGIIVLVDYAHTGDALENVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDL 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453 AIVT DNPR+E+P+ I +I GI GF +R A+R AI Sbjct: 403 AIVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAI 462 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 D++++AGKGHE IV EK D + L L Sbjct: 463 MAARPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503 >gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] Length = 495 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 156/496 (31%), Positives = 241/496 (48%), Gaps = 13/496 (2%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K L + R+ ++ E+ DSR G +FVAI G++ DG FI QAI GA Sbjct: 2 KKLTALWDIDEQLDSVHRDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A++ + Q + + N P++ K LS A R Y + + + VTGT+GK Sbjct: 62 SAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++A + Q Q G +S +G ++ TT S I + +L QG Sbjct: 122 TTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFA 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSHGL QHR++ + AG FTNL RDH+DYH T + Y AK RLF EL + Sbjct: 182 AIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKILN 241 Query: 246 IYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + + + + CR ++ + + + + Sbjct: 242 VDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNG 301 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G F V N L+ +++G D +L + +L V GR E + + + V Sbjct: 302 ILSSPLIGGFNVSNLLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEML-SAKHKATVIV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L++ G++ +FGCGGDRD+GKRP+M IA AD IVTDDNP Sbjct: 361 DYAHTPDALENALQSAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNP 420 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+E+PE+I +I+ G R +AI+TA++ + DV+++AGKGHE I+ Sbjct: 421 RTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT 480 Query: 478 GEKKMSVDCDIIREIL 493 K D +I+++ Sbjct: 481 -TKYHFSDQEIVKKYF 495 >gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia amylovora ATCC 49946] gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Erwinia amylovora ATCC 49946] gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] Length = 495 Score = 319 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 157/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +FVAI G+ DG FIP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG A++ + + D P++ + + LS A R + + ++ Sbjct: 54 QAIAQGVAAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A +FTNL RDH+DYH Y +AK LF E Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + +++ +A + G G+++ KV V + Sbjct: 234 VGQ--AIINADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D L G F V N LVA +++ + + +L V GR E + Sbjct: 292 SSWGDGHIDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T+DNPR E+P I +I+ G+ R +A+ + + D+++VAGKGHE Sbjct: 411 ITNDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ + D D + +LG++ Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494 >gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 319 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 160/530 (30%), Positives = 242/530 (45%), Gaps = 39/530 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER-----KINEVSSDSRHIQAGWIFVAIVGNKED 55 M L+DL+ + P + + +S++S+ I+ G +F+ + G + D Sbjct: 8 MLLRDLLTGLEASELEDFK-LPEAIADHSHWTKAVTGLSTNSQAIEPGMVFIGMPGTRVD 66 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G F AI +GA A +VS + + S+ +L N K + A+ Y + + Sbjct: 67 GGEFWQSAIEKGAIAALVSPSVLASKPNT---SDALVLTTSNIAKVCAELAASFYAQPAK 123 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 NI+ VTGT+GK++ ++ + + +G + + TTP I L Sbjct: 124 AMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTLYTRWPGYEKIAVHTTPFSIDLQA 183 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ V +E SSH L QHR I FTNL +DH+DYH+ YF AK Sbjct: 184 ELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVFTNLTQDHLDYHKDLDDYFEAKAL 243 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF K AI+ D Y +++++R + + ++ + T Sbjct: 244 LFSPDYLKGH-AIVNQKDPYGQKLIERIGKHKTLTYDITDRSADLYTSDLRYSPIGVSGT 302 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + F PL G+F + N L A G + +G+ ++ L + VPGR E V + Sbjct: 303 IHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVSLDQIVVALPEFKGVPGRMERVQIS 362 Query: 353 S---------------------RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + + VDYAHT +SLE LK R GR+I VFGCG Sbjct: 363 TGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPDSLENALKAARPFIEGRLICVFGCG 422 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIE 447 GDRD+ KRP MG+IA + +D IVT DNPR+E PE+I +++ GI G + G+R Sbjct: 423 GDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTESPEQILEDVVAGIEGPLDEEQVIGDRAA 482 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 AIR+AI D +V+AGKGHE I+ EK D + R L L Sbjct: 483 AIRSAILNAQPGDGIVIAGKGHEDYQILGT-EKIHFDDREHARAALEERL 531 >gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] Length = 489 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 158/494 (31%), Positives = 241/494 (48%), Gaps = 16/494 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E + + + + V DSR + AG +FVA+ G DG+ FI AIA GA A Sbjct: 3 IDEALAGIDVLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 IV S + A P +V N R+ L+ A+ ++G I AVTGT+GK++ Sbjct: 63 IVTDSREAWAAGGA-----VPFYLVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTT 117 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A ++Q+ + IG T + + TTP L + G T + Sbjct: 118 TAFLLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVM 177 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L Q R+ G+ + FTNL +DH+DYH T + YF AK RLFE + + + Sbjct: 178 EMSSHALAQERVWGVPVDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAVV 237 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +D+ + + + G V+S G KV + Q PL Sbjct: 238 NEDSPAGVWL-LTRDLGPEVMSYGINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLT 296 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ VYN L A+ + G+ + + + LH VPGRF+ V N G + VDYAHT + Sbjct: 297 GKVNVYNLLAASCAAMGRGLTLEEIAKAAQGLHQVPGRFQTVP-NDLGITVVVDYAHTDD 355 Query: 368 SLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L ++ R + GR+I +FGCGGDRD+ KRP MG+ A + +D+ ++T+DNPR+E+P Sbjct: 356 ALRNLIGLARELVGKGRVITLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTNDNPRTEEPG 415 Query: 427 KIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I E + G+ + + +R AI AI+ + D++++AGKGHE V I+ G Sbjct: 416 AILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKGHEKVQILKTGTV-P 474 Query: 483 SVDCDIIREILGLI 496 D ++ +L I Sbjct: 475 FDDAEVAARVLREI 488 >gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] Length = 487 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 242/485 (49%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ Sbjct: 3 LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q TTP+PI + L+ L + G V++E SS Sbjct: 119 VAQALDLLGQRCGLVGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + TNL RDH+DYH T +AY AK +LF + + DD Sbjct: 179 HGLDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCRVINL--DDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ H + S+ +++ ++ + + T+ + L G F Sbjct: 237 FGRQLAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + + +L L KL GR + +G ++ + VDYAHT ++LE Sbjct: 297 LSNVLAAVGALLGLEYALDEILAVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L +R GR++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPRSEDP +I + Sbjct: 356 VLLALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDD 415 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G R AI I + DV+V+AGKGHE + NG++ D Sbjct: 416 IRAGFSAAEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEI-NGQRHDFSDLAE 474 Query: 489 IREIL 493 + L Sbjct: 475 ADKAL 479 >gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anoxybacillus flavithermus WK1] gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Anoxybacillus flavithermus WK1] Length = 488 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 156/502 (31%), Positives = 236/502 (47%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ + S P+ I + DSR ++ G +FV I G DGH F Sbjct: 1 MKLQTLLQ-------HLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 Q V+ + P++ V+++R+ L++ A YG+ +++ Sbjct: 54 EQ---------AVARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ +++IC+ +G + IG + I D + TTP + L + Sbjct: 105 GVTGTNGKTTTTHLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 V V++E SSH L R+ G FTNL +DH+DYH+T + Y +K Sbjct: 165 VDAHVDIVAMEVSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + AI+ ADDA S+E K K++ + Sbjct: 225 GNRFDHQRPKFAILNADDAASEEYKKSTAATVVTYGIHHKSDIM--AKQIEITTSGTTFQ 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + L G F VYN L A C+ I + ++E + + VPGRFE V Sbjct: 283 LITPIETVQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPGRFEVVDAG 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT +SLE +L+ IR R+ VV GCGGDRD+ KRP+M +IA+ +D+ Sbjct: 343 Q-PFTVIVDYAHTPDSLENVLQTIRQFAKKRVFVVVGCGGDRDRTKRPLMAQIAVKYSDV 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I ++ G+ + +R EAI AIE K D++++AGKGHET Sbjct: 402 PIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKGHET 461 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D + RE + Sbjct: 462 YQIIG-KDVFHFDDRVVAREAI 482 >gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] Length = 495 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 166/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + + ++ DSR AG +FVA+ G+ DG FIPQAIAQG A+ Sbjct: 4 RNLRDILAPWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + Q + P++ +++ LS A R Y + + ++ VTGT+GK++ Sbjct: 64 VAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +S +G TT S + + L+ L G T ++E Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL QHR+ + A +FTNL RDH+DYH Q+Y +AK +LF + A Sbjct: 184 VSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFASHQVGQKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + NA + G+ G+++ + V N V I + Sbjct: 242 DDEVGARWLAKTPNAIAVSMEDKIPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA +++ A +L +L V GR E VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVF-NAPGKPTAVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G + VFGCGGDRD+GKRP+MG IA AD IVTDDNPRSE+ Sbjct: 361 TPDALEKALAAARLHCRGTLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I A+I+ G+ E R EA+ +AI + DV+++AGKGHE +V N Sbjct: 421 PRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNQRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG+I Sbjct: 481 Y-SDRVTVARLLGVI 494 >gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 495 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 164/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + + ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+ Sbjct: 4 RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + A + G+ G ++ +V N + + Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA +++G +L L V GR E + VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVF-NAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+ Sbjct: 361 TPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G+ R EA+ +AI DV+++AGKGHE +V N Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG++ Sbjct: 481 Y-SDRVTVARLLGVV 494 >gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Rickettsia typhi] Length = 492 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 247/483 (51%), Gaps = 23/483 (4%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 ++ KIN +S++S+ ++ +F A+ G DG+ FI A+ GA ++ + + Sbjct: 4 NLNQLFKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNT 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++ V++ + L Y K P+N+++VTGT+GKSSV S++ Q Sbjct: 64 VIDK--------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFL 115 Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + IG + LTT + K L+ + +++ EASSHGL Sbjct: 116 LRKKAAFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGL 175 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI+ +D + Sbjct: 176 EQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIE 235 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V N + ++VG +G + K+ Q + ++ + G FQ N Sbjct: 236 FVKDYLRNNNVKFITVGKKGDV-QITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AA G ++E L K+ V GR E G I+VDY+HT ++LE L Sbjct: 295 LLIAALTLYYTGFKFDEIIEALSKVKPVKGRMER----IDGTNIFVDYSHTPDALEKALI 350 Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 ++ I G++ V+FGCGGDRD+ KR +MGKIA AD I+TDDNPR EDP+ IR EI Sbjct: 351 ELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEI 410 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I GI + E +R EAI+ I L + D+L++AGKGHE IV + +K D +++R Sbjct: 411 IRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFDDSEVVR 469 Query: 491 EIL 493 + L Sbjct: 470 KYL 472 >gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 494 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 151/511 (29%), Positives = 235/511 (45%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L +I + +I + +DSR ++ G +F+ + G+ DGH F Sbjct: 1 MNLKQLSSVLAAAVIEGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA +GA A+VV + + P ++V ++R ++ A+ Y + ++ Sbjct: 54 AQAAGKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I GL + IG + TTP + L + L+ + Sbjct: 105 GVTGTNGKTTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ G +E SSH L+Q R+ G FTNL +DH+DYH T + Y AK F L Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224 Query: 238 LPKE-------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 A++ ADD S K+ + Sbjct: 225 GNAFAKDESARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADV--RASNISITAQGTS 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + D + G+F VYNA+ A + G+ + LE + V GR E V Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV- 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDYAHT + LE +L+ + GR++ VFGCGGDRD+ KRPIMGKIA + Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+ VT DNPR+EDPE I +I G+ + +R +AI AIEM + DV++ Sbjct: 402 DVVFVTSDNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAIEMASPGDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ GE D + ++ + Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491 >gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] Length = 495 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 160/498 (32%), Positives = 250/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + I+ + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSELIAPW-------LELADTDLASLAISRLELDSRQIKSGETFVAIQGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA ++ + R P++ + + LS A RLYG H ++ TG Sbjct: 60 AIAQGANIVLAEADAHHVHGQVEFREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGATG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T AY AK LF E Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ H G +L+ + I ++V + + + Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGISLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L +L V GR E + V Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ +FGCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQYADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + NR +A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMLAGLTHPELAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 494 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 152/511 (29%), Positives = 236/511 (46%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L +I + +I + +DSR ++ G +F+ + G+ DGH F Sbjct: 1 MNLKQLSSVLAAAVIEGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHEFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA +GA A+VV + + P ++V ++R ++ A+ Y + ++ Sbjct: 54 AQAADKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I GL + IG + TTP + L + L+ + Sbjct: 105 GVTGTNGKTTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ G +E SSH L+Q R+ G FTNL +DH+DYH T + Y AK F L Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224 Query: 238 LPKE-------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 A++ ADD S K+ + Sbjct: 225 GNAFAKDESARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADV--RASNISITAQGTS 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + D + G+F VYNA+ A + G+ + LE + V GR E V Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV- 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDYAHT + LE +L+ + GR+I VFGCGGDRD+ KRPIMGKIA + Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+ +VT DNPR+EDPE I +I G+ + +R +AI AIEM + DV++ Sbjct: 402 DVVLVTSDNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ GE D + ++ + Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491 >gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 245/485 (50%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ IF + I E++ DSR+++AG +F+A+ G + DG I A+ +GA A+ Sbjct: 3 LSLNKIFAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY +Q + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVQGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G A ++ L TTP+PI + L+ L G V++E SS Sbjct: 119 VAQALDLLGQHCGIVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + TNL RDH+DYH T QAY AK +LF K + DD Sbjct: 179 HGLDQGRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVINL--DDE 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ + S+ G ++++++ + T+ + L G F Sbjct: 237 FGRQLAAEKRESRLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + + +L+ L KL GR + +G ++ + VDYAHT ++LE Sbjct: 297 LSNVLAAIGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L +R G+++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPR+EDP++I + Sbjct: 356 VLTALRPHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDD 415 Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G + R +AI I + DV+V+AGKGHE + NGE+ D Sbjct: 416 IRAGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474 Query: 489 IREIL 493 L Sbjct: 475 ADHAL 479 >gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] Length = 487 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++YK + E +I ++ DSR ++ G +FVA+ G + DGH F Sbjct: 1 MKVLKDILYKV-------SLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +A+A GA+A++ + ++ + V N+ K + + A + E + Sbjct: 54 IDKALALGAKAVIFEK------LPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKV 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 +AVTGT+GK++ + + Q+ R G S+ + + I+ TTP + + L Sbjct: 108 VAVTGTNGKTTTVTLLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQ 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G TH +EASSH + Q R+ G+KL FTN+ DH+DYH T Y AK +LF+E Sbjct: 168 MLEAGCTHCFMEASSHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDE 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A++ DD +++ + + + ++ Sbjct: 228 -LPKAAFALVNGDDKRGMVMLQNCKGSHQTFGLKTPAEFKAKIISNTLEG------LELD 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F + G F YN L G + +G + VL L + GRF+ + G Sbjct: 281 INGTLIWFMMIGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDR--ISIGGV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +LK I + +G ++I + GCGG+RD+ KRPIM KIA+ +D I Sbjct: 339 TAIVDYAHTPDALDNVLKTINGVRTGVEQLITIVGCGGNRDKTKRPIMAKIAVQESDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP I ++ G I + +R EAI+TA + NK D++++AGKGH Sbjct: 399 LTSDNPRFEDPMDILKDMQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +I+ E L Sbjct: 459 EDYQEIK-GVKHHFDDAEIVTEYL 481 >gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia typhi str. Wilmington] gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington] Length = 498 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 249/489 (50%), Gaps = 23/489 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ ++ KIN +S++S+ ++ +F A+ G DG+ FI A+ GA ++ Sbjct: 4 ILFMKYNLNQLFKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVIT 63 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + ++ V++ + L Y K P+N+++VTGT+GKSSV S++ Sbjct: 64 ENKKNTVIDK--------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYI 115 Query: 134 QQICQRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 Q + IG + LTT + K L+ + +++ E Sbjct: 116 AQTYFLLRKKAAFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFE 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGL+Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI+ + Sbjct: 176 ASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNS 235 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D + V N + ++VG +G + K+ Q + ++ + G Sbjct: 236 DIEEIEFVKDYLRNNNVKFITVGKKGDV-QITKITCSLTGQNIDFIFNNIIYNLHTLIIG 294 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ N L+AA G ++E L K+ V GR E G I+VDY+HT ++ Sbjct: 295 SFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMER----IDGTNIFVDYSHTPDA 350 Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 LE L ++ I G++ V+FGCGGDRD+ KR +MGKIA AD I+TDDNPR EDP+ Sbjct: 351 LEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPK 410 Query: 427 KIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 IR EII GI + E +R EAI+ I L + D+L++AGKGHE IV + +K Sbjct: 411 LIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFD 469 Query: 485 DCDIIREIL 493 D +++R+ L Sbjct: 470 DSEVVRKYL 478 >gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 249/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + R + E++ DSR AG +FVAIVG+K DG +IP Sbjct: 5 NLRDLLAPWVQD-----------TPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D + P++ + N + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G A TT S + + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH ++Y AK LF E Sbjct: 174 EQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + +A + G +G+++ ++ N + Sbjct: 234 VGQMIIN--ADDEVGLRWLAQLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +++G ++ +L V GR E + Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSE+P+ I A+I+ G+ R EA+ +AI + DV++VAGKGHE Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494 >gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] Length = 496 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 161/506 (31%), Positives = 249/506 (49%), Gaps = 31/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ + + ++ DSR ++ ++FVAI G + DGH +I Sbjct: 1 MLFRELLEAVEADAAGG-------DLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+ +GA A+V+ + +V + R+ L+L ++R YG + + Sbjct: 54 GEALERGALAVVMERRVE-------LPPGVAWALVPDARRALALLSARFYGNPSFKMKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ S + I +G IG + I + TTP L + L + Sbjct: 107 GVTGTNGKTTTTSLIADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 + V +E SSH L HR+DG + FTNL +DH+D+H+ + Y +K++LF+ Sbjct: 167 VIEKVDACVMEVSSHALALHRVDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWL 226 Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A+I ADD ++ + ++ A G + + + Sbjct: 227 GRPGHKREAGIAVINADDPHAGQFIRAAG--GTVYTYGIKNAADVRAESISIGARGACFG 284 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + + G F VYNAL A A+G+ + + E LEK PGRFE V + Sbjct: 285 VAGKWGRLRLDLRITGLFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMV-DS 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT + LE ILK R IT GR+I VFGCGGDRD+ KRP+MG IA +D Sbjct: 344 GQDFAVVVDYAHTPDGLENILKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDF 403 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AI+T DNPR+EDP KI EI G+ ++ + +R +AIR A+EM + DV+V+AGK Sbjct: 404 AIITSDNPRTEDPLKIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGK 463 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHE I+ K D L Sbjct: 464 GHEDYQIIGT-RKIPFNDRREAAAAL 488 >gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 157/501 (31%), Positives = 243/501 (48%), Gaps = 20/501 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++++ L+ I + ++ DSR + G +F+AI G++ DG FI QA+A Sbjct: 1 MLHRALDSLLRPFGI---NAPALSLTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVA 57 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 QGA AIV T P + + + LS A Y + + + +TGT Sbjct: 58 QGATAIVFEEDGEFVAPPLT----IPCIGIRDLPARLSELAGYFYEQPANKLDLVGITGT 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GKS+ A V G + +G + TT S + + L+ L QG Sbjct: 114 NGKSTTALLVANWRTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGA 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V++E SSHGL QHR+ + A FTNL RDH+DYH T +AY AK L + L E Sbjct: 174 ALVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVDEP 231 Query: 243 PAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I ADD ++ + + G+ + + + I+ + Sbjct: 232 CAVINADDQLGRQWLAAYPGAVAFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGN 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G F V N L A G + +G D ++L +L V GR E G + Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAPL-AV 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L+ +R G++ + GCGGDRD+GKRP+M +A AD I+TDDN Sbjct: 351 VDYAHTPDALEKALQALRVHCEGQLWCLVGCGGDRDRGKRPMMAAMAEQHADRVILTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR+E+P +I A+++ G+ + +R++AI A+ +KQD+++VAGKGHE I+ Sbjct: 411 PRTEEPAQIMADMVAGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKGHEDYQIIG 470 Query: 477 NGEKKMSVDCDIIREILGLIL 497 +K+ D + + L +L Sbjct: 471 T-DKRHYSDRETVVAALHTLL 490 >gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] Length = 483 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 238/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I ++ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI++GA AI+ D + V ++ + A+ YG + + Sbjct: 54 PAAISKGATAILCE------DMPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L + L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVR-SKDGVT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALTNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV+++AGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + ++ +L Sbjct: 460 NYQEIK-GVKHHFDDKEEVKRMLN 482 >gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] Length = 481 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 244/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ L+ + + ++ + DSR ++A +FVA G DGH +I Sbjct: 1 MMLDDILQNVI--LLKTIGNI-----DINVSGIQFDSRKVEAENVFVATRGTASDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA AIV + + I N + V+++ L AS Y + + Sbjct: 54 ATAIENGAVAIVCE------ELPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + Q+ + G S + + ++ A + TTP + L L+ + Sbjct: 108 GVTGTNGKTTIATLLYQLFRELGHKSGLLSTVCNYVNDLAVEATHTTPDALALNALLAQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH +DQHR+ G++ FTN+ RDHIDYH T + Y AK + F+ Sbjct: 168 VDAGCEYAFMEVSSHSIDQHRISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDN- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ A+ ADD +++ + G + + + Sbjct: 227 LSTDAFALTNADDKNGLVMLQNSKAKKYTYSLRGMADFKTRILEHGFEGMLL------DM 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D + G+F N G + +G D VL + LH V GRFE + + G Sbjct: 281 NDKEVNVSFIGKFNASNLSAVFGAAVLLGQDELEVLRIISSLHSVSGRFETLH-SPAGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L ++ I I +GR+I V GCGG+RD+GKRP+M + A++ + AI+ Sbjct: 340 AIVDYAHTPDALVNVIGTINQILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWKAIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P++I +++ G+ + +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQEILNDMLAGLDVVEKAKSLTIVDRREAIKTACALAQAGDVVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ G K D + +R+ Sbjct: 460 DYQIIQ-GVKHHFDDREEVRKCF 481 >gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] Length = 471 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 161/474 (33%), Positives = 232/474 (48%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVAIVG++ DG +IPQAIAQG A++ + D S P+ Sbjct: 1 MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLGQLPQAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G+ G ++ V N + + L G F V N LVA +++ Sbjct: 239 GQVPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAQLLATAPNLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ + Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI ++DV++VAGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKEEDVVLVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470 >gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 249/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + R + E++ DSR AG +FVAIVG+K DG +IP Sbjct: 5 NLRDLLAPWVQD-----------TPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D + P++ + N + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G A TT S + + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH ++Y AK LF + Sbjct: 174 DQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFADHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + +A + G +G+++ ++ N + Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +++G ++ +L V GR E + Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSE+P+ I A+I+ G+ R EA+ +AI + DV++VAGKGHE Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494 >gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] Length = 487 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 243/501 (48%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + + I ++ DSR I A +FVAI G DGH FI Sbjct: 4 LKDILYKVAIESVKGSTA-------VDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEA 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+A GA +V + + + + V + R+ L++ AS Y ++ V Sbjct: 57 AVANGANVVVCE------ELPSEVIPEVSYIQVKDCREALAVMASNYYDNPSANLKLIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V S + Q+ + G I +LTTP + + L ++ Sbjct: 111 TGTNGKTTVTSLLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNE 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV +E SSHG+ QHR G+ G FTNL +DH+DYH+T Y + K R F++ L Sbjct: 171 VGVEFCFMEVSSHGIAQHRTLGLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQ-LS 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K+ A+ DD +++ + + + + + Sbjct: 230 KKGFALTNVDDKNGNYMLQNTKAKTFGYGVKNLTDYKVKILEKSFSG------LKLNING 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G+F YN L + + + L++L +L V GR++ +S G + Sbjct: 284 TEVWSRFIGDFNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQ-HHMSSTGIHVI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I S +I V GCGGDRD KRP+MGKIA +L+ I+T Sbjct: 343 VDYAHTPDALQNVLQTTNDIRSRSEELITVVGCGGDRDTTKRPLMGKIAGNLSTKVILTS 402 Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP+ I +I G + + +R +AI+TA + ++D++++AGKGHET Sbjct: 403 DNPRTEDPDSIIKDIEKGVEPQDVSKTLSITSRQQAIKTACILAQQRDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + NG + D I++E+L Sbjct: 463 QEI-NGIRSDFDDLKIVKELL 482 >gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 492 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 147/498 (29%), Positives = 230/498 (46%), Gaps = 22/498 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L + L + + + + DSR + G +FVAI G+ DG FI +AI GA AI Sbjct: 2 RDLKDILKYIEIDAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIENGAIAI 61 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + P+ +V K L ASR Y + + + + VTGT+GKS+ Sbjct: 62 IADRLCEFESSFE------PLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKSTT 115 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + Q S IG TTPS + L LS L+SQ V++E Sbjct: 116 TAMIAHLAQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH +Y +AK+ LF + + ++ Sbjct: 176 VSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRD--FEPQVVVLNQ 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD +++ +++ ++++ V +S D Sbjct: 234 DDFQAEQWLEKYDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIKS 293 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GEF +YN A + +G ++ +L V GR + VDYAH Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQAFSQAGMPTC-VVDYAH 352 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L + L+ ++ G + VFGCGGDRD+GKR +M + A A+ I+T DNPRSE+ Sbjct: 353 TPDALALALQALQLHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNANKIIITSDNPRSEN 412 Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A++ G+ + +R AIR AIE DV+++AGKGHE I+ + Sbjct: 413 PDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGKGHEDYQIIGDKRID 472 Query: 482 MSVDC---DIIREILGLI 496 + +++ L I Sbjct: 473 FCDRRYVQEQLKKALRGI 490 >gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 487 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 235/484 (48%), Gaps = 14/484 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I N DV+V+AGKGHE + +G++ D Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475 Query: 490 REIL 493 + L Sbjct: 476 AKAL 479 >gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] Length = 495 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 159/498 (31%), Positives = 253/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L LI F + + I + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSKLIAPWF-------ELTDPKLASLVITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA A++ + R P++ + + LS A RLYG H ++ VTG Sbjct: 60 AIAQGANAVLAEADAHHAHGQIEYREAVPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLWDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 239 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ G +++ + I ++V + + + Sbjct: 240 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPDTAQAIWARQVEYAESGITLNFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L +L V GR E + +I V Sbjct: 298 ELHAPLIGEFNACNVLLAFATLLSLGFEKSALLATAPQLRPVIGRMELFQRE-QKAKIVV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMVVGLTHPERAHIEHHRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] Length = 484 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 153/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ +I E+I ++ ++I+ ++ DSR I+ IF+A+ G + DGH + Sbjct: 1 MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPDHIFIAVKGTQTDGHTY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI +GA +V + T+ N + V++T + A+ YG + Sbjct: 53 IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + + ++ G + I + I A TTP PI L K L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK F + Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + + + + + Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F N L G +G + VL L L V GRF+ + + +G Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ +D I Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G + I +R EAIRTA + +DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +++R+I Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481 >gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 490 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 164/489 (33%), Positives = 237/489 (48%), Gaps = 14/489 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + + ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + Sbjct: 3 DLLAPWGLDVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 D S P++ + N + LS A + Y + ++ VTGT+GK++ + Sbjct: 63 DGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G +S +G TT S + + L L QG T ++E SSH Sbjct: 123 AQWAQMLGETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q+R+ + A FTNL RDH+DYH +Y AK LF + ADD Sbjct: 183 GLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEV 240 Query: 253 SKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + +++ A + G+ G ++ +V N + + L G Sbjct: 241 GRRWLEQLPQAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N LVA +++G +L L V GR E + VDYAHT ++ Sbjct: 301 AFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NALGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I Sbjct: 360 LEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G+ R EA+ +AI DV+++AGKGHE +V N D Sbjct: 420 IADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SD 478 Query: 486 CDIIREILG 494 + +LG Sbjct: 479 RVTVARLLG 487 >gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] Length = 496 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 233/499 (46%), Gaps = 21/499 (4%) Query: 9 KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL+ + +I + DSR G +F I G D H FIP G Sbjct: 3 KQLEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++ A S + +L V N ++ L Y ++ +TGT+G Sbjct: 63 ARAVLTERA------SVDVPDGVAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + V+ I + +G IG + I TTP I L + L+ + ++G+ Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDT 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241 V +E SSH L R+ GI+ +FTNL +DH+D+H+T + Y AK LFE KE Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKE 236 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + E M+ + V + A + + + F Sbjct: 237 GKTAVLNADDAASETMRAHTHCPVITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G F V+N L A G +A +++A + L VPGRFE V + VD Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVREGQ-DFAVIVD 355 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + +E +L+ R +T GRII VFGCGGDRD+ KRPIMG+I ++ADIAI+T DNPR Sbjct: 356 YAHTPDGMENVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPR 415 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP I E+ G+ + + +R AI AI+ D +V+ GKGHET I+ Sbjct: 416 TEDPAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKGHETYQIL 475 Query: 476 TNGEKKMSVDCDIIREILG 494 +G D + RE + Sbjct: 476 KDGT-IHFDDREQAREAIR 493 >gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] Length = 518 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 144/511 (28%), Positives = 236/511 (46%), Gaps = 25/511 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L F + + + P E +I ++ +S+ + +FV I G++ DGH +I Sbjct: 1 MKLSVL----FKRIQHAVIQMPELEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 +A GA I++ S N +++V +TR+ L+ + +G ++ Sbjct: 57 EEACNLGASCILIEKLVSG-GRMLKFPENVAVVLVKDTREALAGISRIWFGSPADKLKVI 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GKS+VA ++++ + G IG + + ++ TTP + + + Sbjct: 116 GVTGTKGKSTVAVMIREMLESLGQKCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKM 175 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SS G+ QHR+DGI FTN G DHI + A L Sbjct: 176 VEAGCHYAVMEVSSQGIKQHRIDGIWFEIAVFTNFGEDHIG--PGEHASLGEYRYYKSCL 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQ 289 + I DDA + +R + +K+ + Sbjct: 234 FEQCRIGIGNLDDAQCSYMFQRKCCTKYGFTCREEEGQERGFRNSHVLTAEKISFLMEGG 293 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ D + LPG+F VYNAL A +G + + L+ L V GR E V Sbjct: 294 ELKTVFYADDRKYELALPGKFNVYNALAALQTVSCLGFEREEAGDVLKHLVV-RGRMERV 352 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 Y+DYAH + SL +LK +R RI++VFGCGG+R +R MG++A +L Sbjct: 353 DAGE-NILCYIDYAHNAMSLAKVLKMLRIYEPERILLVFGCGGNRAGSRRSGMGRVAGEL 411 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A++ I+T DNPR E+P KI A++ GI + +R EA+ A+EM + D+L++A Sbjct: 412 ANLTIITSDNPRWEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGDILLIA 471 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKGHE + G + D +++R+ + L+ Sbjct: 472 GKGHENYQEIQ-GVRYPMDDRELVRKAVRLV 501 >gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] Length = 495 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 161/495 (32%), Positives = 249/495 (50%), Gaps = 10/495 (2%) Query: 7 IYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K +LI+ L+I + + DSRHIQAG FVAI+G+ DG FI +AI Sbjct: 3 TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA ++ + S R P++ ++ K LS A RLYG H +++AVTGT+G Sbjct: 63 QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++++ + Q G + +G T S Q TT + + + L L+ QG + Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG F+NL RDH+DYH T A A +L + A Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDA--YADAKLSLFTEHETRQA 240 Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD ++ H G + + + + +V + + + Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLR 300 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G + +L +L V GR E ++ VDYA Sbjct: 301 APLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELF-QAPGKAKVVVDYA 359 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M IA AD I+TDDNPRSE Sbjct: 360 HTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSE 419 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP+ I +++ G+ + NR +A+RTA+ +QD++++AGKGHE ++ + Sbjct: 420 DPQAIVNDMLAGLKTPQHASVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDTI 479 Query: 481 KMSVDCDIIREILGL 495 D + + +L L Sbjct: 480 HY-SDRESAQTLLEL 493 >gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chitinophaga pinensis DSM 2588] gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis DSM 2588] Length = 488 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 151/507 (29%), Positives = 241/507 (47%), Gaps = 32/507 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++Y ++ + +N +S DSR + G F+AI G DGHLF Sbjct: 1 MKTLRDILYNVSIREVHGS-------TDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AIAQGA I+ + ++ + ++V+++ + A Y + Sbjct: 54 IDKAIAQGAAVIICE------ELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + ++ + + + I TTP I+L L+ Sbjct: 108 VGVTGTNGKTTIATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLAD 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +G +V +E SSH + Q R+ G+K G F+N+ DH+DYH+T Y K F + Sbjct: 168 MVDEGCEYVFMEVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKK-AFFD 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP + A+ DD +++ + + + + Sbjct: 227 GLPTTAFALTNLDDKRGNVMLQNTRAKKQSYSLKTVADFKGKILENNLTG------LIMT 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + F L GEF YN L G I +G D VL+ L L GRF+++ + Sbjct: 281 VNEKEVHFRLIGEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRI 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I+ + G I V GCGGDRD KRP+M A + +D I Sbjct: 341 IGIVDYAHTPDALLNVLATIKNLRKGNEQVITVVGCGGDRDTAKRPVMAAAATEHSDKVI 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPRSEDP I ++ GIP + +R EAI+TAI + N D++++AGKGH Sbjct: 401 LTSDNPRSEDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKGH 460 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 E + G K D ++ E+L L+ Sbjct: 461 EKYQEIQ-GVKHPFDDKKVLLEMLELM 486 >gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 157/492 (31%), Positives = 245/492 (49%), Gaps = 32/492 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ + DSR +Q G +F A+ G DGH FI A+A+GA A+V+ S Sbjct: 16 SGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVVMES------- 68 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS 140 T+ + ++V + R+ ++L A+ +G +++L +TGT+GK++V+ V+ I + Sbjct: 69 PHTLPTGVTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVESILLAA 128 Query: 141 GLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G +G A + TTP + L + ++ +G + +E SSH L+Q R+ Sbjct: 129 GYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG+ G FTNL +H+DYH + YF AK+RLF L + ++ D + Sbjct: 189 DGVWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDSWGARLGA 248 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A R V ++ PL G++ + N L AA Sbjct: 249 MLPAVIRCGHASECDVT--ADDVTISVAGIAGSLRTARGTAALQSPLVGDYNLQNLLCAA 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ A+ + A + + L + VPGR E N RG + VDYAHT ++LE +L +R + Sbjct: 307 GVGAALDMVPATIAKALAQAPQVPGRLE-SIANERGALVLVDYAHTGDALENVLVTLRQL 365 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 R++ VFGCGGDRD GKRP+MG+IA LAD+AI+T DNPRSEDP I ++ G+ Sbjct: 366 QPRRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLRRI 425 Query: 440 IEKG------------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E+ +R EAI A+ +L DVL+VAGKGHE I+ ++ Sbjct: 426 HEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQPDDVLLVAGKGHEDYQIIGR-QRL 484 Query: 482 MSVDCDIIREIL 493 D + +R+ L Sbjct: 485 HFDDREELRKAL 496 >gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] Length = 487 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 149/494 (30%), Positives = 242/494 (48%), Gaps = 26/494 (5%) Query: 11 FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +++N +SI + + ++ V DSR + G +FVA+ G DGH+FI +A+A GA+ Sbjct: 4 LSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAK 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 +V + + + V+N L L A+ Y + + VTGT+GK+ Sbjct: 64 IVVCEQ------LPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +VA+ + ++ G I + ++ ++ TTP PI L + L + + G + Sbjct: 118 TVATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCF 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH + QHR+ G+ + G FTNL DH+D+H+T AY AK F ++LPK + A++ Sbjct: 178 MEVSSHAVAQHRITGLSFVGGVFTNLTHDHLDFHKTFDAYLKAKK-AFFDMLPKSAFALV 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD +++ + + Q+ F Sbjct: 237 NIDDKNGSVMLQNTDAYKKTYGLKNIADFKGRIVESHFNGMLMQIDTREVWIRLVGAFNA 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 YN L + I + D+ VL L +L GRF+ + + G VDYAHT Sbjct: 297 ------YNLLAVYSVAILLEQDTTRVLTILSRLTGAEGRFDTL-VSGNGVIGIVDYAHTP 349 Query: 367 NSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +++E +L+ I + + II V GCGGDRD+ KRP M +A +L+D I+T DNPRSED Sbjct: 350 DAVENVLRTIVDLRKNKEQIIAVLGCGGDRDKTKRPEMAAVAANLSDKVILTSDNPRSED 409 Query: 425 PEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P++I E+ GIP +R EAI+ A+ + D++++AGKGHE V GE Sbjct: 410 PQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKGHEKYQEVM-GE 468 Query: 480 KKMSVDCDIIREIL 493 K+ D I++++ Sbjct: 469 KRPFDDKAILKDLF 482 >gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] Length = 493 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 162/486 (33%), Positives = 242/486 (49%), Gaps = 8/486 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + I ++ + I+ + DSR I G FVAI G+ DG FI AI +GA A++ Sbjct: 11 LAPWVDISAHEFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S + S P++ +D + LS ASRLY ++ VTGT+GK+++ + Sbjct: 71 QSCERHPQGVCSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQII 130 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G + +G Q TT S I + + L + SQG ++E SSH Sbjct: 131 AQWLNLVGKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + AG FTNL RDH+DYH T + Y AK LF E + AII DD Sbjct: 191 GLVQGRVKTLPFAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE--HQCGKAIINVDDQV 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++ +A L + +V + + S D F PL GEF Sbjct: 249 GAKWAEQLPDAIQVSLQPLSSTNAVFASQVDYSESGISLAFSGRFGDGQFSVPLIGEFNA 308 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N LVA +A+GID ++E ++L V GR E N ++ VDYAHT ++LE Sbjct: 309 NNVLVAFTTLLALGIDKQQLIETAKQLTPVIGRMELFH-NEGKAKVVVDYAHTPDALEKA 367 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L +R G++ +FGCGGDRD GKRP+M +I LAD ++ DDNPRSE P I ++ Sbjct: 368 LMALRVHCHGKLWAIFGCGGDRDTGKRPMMAEIGERLADHVVLADDNPRSESPSAIVDDM 427 Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G+ I + +R +A++ A+ D++++AGKGHE ++ N D + Sbjct: 428 LAGMRNPERAIVEHDRFKALQYALANSEVHDIILLAGKGHEDYQVLANETVHY-SDRESA 486 Query: 490 REILGL 495 +++L L Sbjct: 487 QQLLEL 492 >gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] Length = 495 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 159/498 (31%), Positives = 252/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + + I + DSR I++G FVAI G+ DG FI + Sbjct: 7 LSELIAPW-------LELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI QGA ++ + + + R P++ + + LS A RLYG H ++ VTG Sbjct: 60 AIVQGANLVLAQADAEHPNGVSEYRQQVPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTG 119 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T S + TT + + + L L+ +G Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLSALEPAANTTGNALQIQATLRDLAERG 179 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + Sbjct: 180 AQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 239 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ G +++ + I ++V + + + Sbjct: 240 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPGTAQAIWARQVEYAESGITLNFDSSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + +L KL V GR E + V Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM-VV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416 Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + NR +A A++ QD++++AGKGHE ++ N Sbjct: 417 RSESPQAIVADMVAGLNHPELAHIEHNRFQAASYALQQAGAQDIILLAGKGHEDYQVLAN 476 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 477 ETIHY-SDRETAQQLLEL 493 >gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] Length = 486 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 139/500 (27%), Positives = 230/500 (46%), Gaps = 25/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + L+ + +I+ + DSR ++ +FV I G DGH FI Sbjct: 1 MKLSKLLERSEYTLVQGT-------EDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q I +GA+ IVV ++ D+TRK L+ ++ +G E ++ + Sbjct: 54 GQVIEKGAKVIVVQQDVEA-------PKGVTVIRFDDTRKALAEMSAAYFGYPAEELMTI 106 Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T K + +G + IG T I + TTP + ++ + Sbjct: 107 GITGTKGKTTITYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +E SS GL HR+ G G FTNL DHI ++ + + + Sbjct: 167 ADAGCKNVVMEVSSQGLMLHRVSGFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQ 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 ++ DD + + + + G H++++ Sbjct: 227 QCRQGIVNGD-DDYVERIIKGHTCSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGK 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++++ +PG+F VYN+L A LC +GI VL+ L + V GR E + T Sbjct: 286 EEYNVHVDIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQV-KGRLEIIKTPGE-YT 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH + SLE +L IR +I +FGCGG+R + +R MG+++ LAD+ +VT Sbjct: 344 LMIDYAHNAMSLESLLTTIRKYDPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTS 403 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P I +I+ G+ ++ +R EAIR +E K D++++AGKGHE Sbjct: 404 DNPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKGHEDYQ 463 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + G K + D+IREI+ Sbjct: 464 EI-RGVKHHMDERDLIREII 482 >gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] Length = 483 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 237/504 (47%), Gaps = 32/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P I + E +I V+ DSR +QAG +F+A+ G + DGH++I Sbjct: 1 MVLSELLKAIQP-------IQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AI +GA A++ D + + V ++ + A+ Y + + Sbjct: 54 PVAIEKGAVAVLCE------DVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +E SSH +DQ R+ G++ G FTNL RDH+DYH+T + Y AK + F+++ Sbjct: 168 ADSGCKYVFMEVSSHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK + ++ DD + + + + + + Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G F N L G + +G VL L L V GRF+ V + +G Sbjct: 281 NNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVR-SPKGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G K D + + ++ Sbjct: 460 NYQEIK-GVKHHFDDKEELNKVFN 482 >gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] Length = 488 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 149/503 (29%), Positives = 232/503 (46%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + +++ +I E+ +DSR + G +FV I G DGH ++ Sbjct: 1 MKLTKLLERLDYKVVAGSD-------NIEITELVNDSRKVVPGSVFVCISGAVSDGHQYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +GA A++V + + ++ V+NTR L+L ++ +G E + Sbjct: 54 KDVAERGAAAVIVEKDVEVPE-------GLTVIKVENTRYALALMSAAYFGYPAEKLKTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + G IG + I + TTP + K + + Sbjct: 107 GITGTKGKTTTTYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLG DHI + + + L Sbjct: 167 VEAGCDCVVMEVSSQGLMLHRTAGIMFDIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISV 295 L K+ I D E + + G + + + Sbjct: 224 LFKQCKVGIGNVDDKWFEDVFKDATCEIETFGFGEKADLRAIDVKHISRPGYLGVWYHVT 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PGEF VYN+L A +C + + + L+ + V GR E V + Sbjct: 284 GLMDFDVEIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDALK-VAKVKGRIEMVKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + +LE +L +R GRI+ VFGCGG+R + +R MG+++ L+D I+ Sbjct: 342 FTLMIDYAHNAMALESLLHTLRDYNPGRIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +II G+ +I+ +R EAIR AIE DV+V+AGKGHET Sbjct: 402 TSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKGHET 461 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K + +I+E+L Sbjct: 462 YQEIK-GVKYDMDERVLIKEVLE 483 >gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [uncultured Desulfobacterium sp.] Length = 537 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 165/508 (32%), Positives = 258/508 (50%), Gaps = 36/508 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + S + + + I V S+ ++ IFVA+ G++ DGH F+ AI +GA AIVV Sbjct: 37 IFYGNSEYTEFYLDPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVV 96 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVAS 131 ++ I+ V+NTRK L A+ YG E I+ +TGT+GK++ A Sbjct: 97 QKK---------TVKDSIIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAY 147 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 ++ I Q +G + IG + S + +TTP + L K LS + GVTHV +E S Sbjct: 148 LIESILQTAGFKTGVIGTINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVS 207 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIY 247 SH +D R++G + FTNL +DH+DYH+ ++Y+ K +LF E L PK+ A Sbjct: 208 SHAIDLFRIEGCFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTV 267 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + + + + + I+ + IS F L Sbjct: 268 INCDDERGKALSGILSTKCIKTGSDSECDIYASNSRIDTLGIKALISTPESTFSIESELV 327 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ + N + AAG+ +GI S ++ + ++ L V+PGR E + N G +YVDYAHT + Sbjct: 328 GKHNIENIMSAAGVASGLGISSEIIKKGIKSLSVIPGRLEKI-NNEAGISVYVDYAHTPD 386 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L+ +L ++R I GR+I VFGCGGDRD+ KRP+MG++A DL+D A++T DNPR+EDP + Sbjct: 387 ALKNVLLSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTE 446 Query: 428 IRAEIIHGIPG-------------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I +II GI ++ + +R +AI I + DV+++AGKG Sbjct: 447 IINQIITGIKRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKG 506 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496 HET ++ + D L I Sbjct: 507 HETYQLIG-KDSFPFDDRLEAGFALSQI 533 >gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya zeae Ech1591] gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591] Length = 494 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 171/497 (34%), Positives = 246/497 (49%), Gaps = 13/497 (2%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L + L+ + ER + E++ DSR AG +FVAIVG+K DG +IPQAIAQG Sbjct: 2 TDRNLRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVA 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A+V + + D + T P++ +D+ LS A R Y + ++ VTGT+GK+ Sbjct: 62 AVVAQADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKT 121 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + Q Q G +S +G + TT S + + + LS L +QG + Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAA 181 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + A FTNL RDH+DYH Y AK RLF E + Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKIIN- 240 Query: 247 YADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ADD + + R + + +++ ++ + VT Sbjct: 241 -ADDEVGRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAIN 299 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L GEF V N L+A +++G ++E L V GR E + R + VDYA Sbjct: 300 SRLMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGRPT-VVVDYA 358 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSE Sbjct: 359 HTPDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418 Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP+ I +I+ G+ R EA+ +A+ DV++VAGKGHE +V N Sbjct: 419 DPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478 Query: 481 KMSVDCDIIREILGLIL 497 D + +LG+I+ Sbjct: 479 DY-SDRITVARLLGVIV 494 >gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] Length = 471 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 234/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S + P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G++G ++ +KV N + + L G F V N LVA +++ Sbjct: 239 SQVPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ + Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI DV+++AGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470 >gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t. morphotype B'] Length = 481 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 155/501 (30%), Positives = 237/501 (47%), Gaps = 31/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLF 59 M+L+ ++ EL R I+E+ DSR I+ +F+AI G DGH + Sbjct: 1 MELKKILENVEYEL-------QQGDINRDISEIIYDSR-IKTRCGLFIAIKGYMSDGHKY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI GA IVVS A + +N ++ V +TR ++ A YG + + Sbjct: 53 VSNAIENGARVIVVSDAV-------FVAANIAVVRVKDTRAVMAAIAGNFYGHPSKELAL 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S + +I + IG + I + TTP I L K Sbjct: 106 VGVTGTNGKTSTTFLLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRK 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++++ V +E SSH L +R+DG G FTNL +DH+D+H+T Y AK +LF Sbjct: 166 MNTEDVDVAIMEVSSHALVLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLFSM 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 G + + K + ++ Q + Sbjct: 226 CKISIINVDSPYSKVMLDSCKAETITYGIKNPAT------FFAKDIVIHAHETQYVLEYN 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GKD + P+PGEF VYN + A +G+ + L+ + VPGR + +++G Sbjct: 280 GKDLQIVVPIPGEFTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQ-SFQSTKGY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE +L I+ G I+ VFGCGGDRD KRPIMG+IA + +T Sbjct: 339 SVLVDYAHTPDGLENVLTAIKQFAKGDIVTVFGCGGDRDNKKRPIMGEIASKYSTKVYIT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSE+P++I +I G + + +R AI A+ K DV+++AGKGHET Sbjct: 399 SDNPRSEEPDEIIRQIEVGAKKHITPYEIESDRKTAIIKALSFAKKDDVILIAGKGHETY 458 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + +G D +++ E L Sbjct: 459 QHLKDG-IIHFDDSEVVLEFL 478 >gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] Length = 463 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 258/476 (54%), Gaps = 25/476 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ +S+ ++ G+IFVAI G++ DGH F+ +A+++GA+ ++V + + Sbjct: 6 DVKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDVGI--------T 57 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + I+ V +TR+ L S YGK + ++ +TGT+GK++ V+ + G+ + Sbjct: 58 DNRIVKVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGL 117 Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + + TTP P L + G + E SSH LDQ R+ Sbjct: 118 VGTIYYRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHF 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL DH+DYH++ + YF AK+RLF+E + A++ +DD Y K +++ Sbjct: 178 HIVGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYE--YAVVNSDDEYGKRIVRELKGRA 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G + ++ ++ EGK + F L G+FQ YN + C+ Sbjct: 236 ITYGREGDFK----ILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCML 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +GI+ + E L+K++V PGRFE + G + VDYAHT ++LE +LK+IR +++GR+ Sbjct: 292 VGIEVQAIEEGLKKVYV-PGRFETYRGD--GFLVIVDYAHTPDALENVLKSIRRLSTGRV 348 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441 I +FG GG+RD+ KRPIMG +A +D+ ++T DNPR EDP I +I+ G+ + Sbjct: 349 ITLFGAGGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKDTSKVLV 408 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 + +R +AI+ AI + + D +++AGKGHE + G K D D+++E+L + L Sbjct: 409 EEDRKKAIKMAISLAEEGDTVLIAGKGHEDYQEIK-GVKYPFKDSDVVKEVLSVRL 463 >gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae Cit 7] Length = 487 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 162/486 (33%), Positives = 237/486 (48%), Gaps = 14/486 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+AI G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDTF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELTGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD A VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASIFDDI 416 Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G + R +AI I N DV+V+AGKGHE + NG+++ D Sbjct: 417 RPGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475 Query: 490 REILGL 495 L + Sbjct: 476 ASALAI 481 >gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] Length = 487 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 249/501 (49%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++Y+ E + + I +V DSR +FVAI G + DGH +I + Sbjct: 4 LKDILYRVTLESVVGNTA-------IAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+AQGA AI+ + I + + V +T L+ AS YG ++ + Sbjct: 57 AVAQGALAIICE------EMPQQIVNGITYVKVADTSSALATIASNYYGNPSANLKLIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++AS + Q+ +++G + + + + TTP + + K L+ +S+ Sbjct: 111 TGTNGKTTIASLLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSA 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV + +E SSHG+ Q R +G+ G FTNL DH+DYH+T Y + K + F+E LP Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDE-LP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + A++ DD +++ Y + + + ++ +D Sbjct: 230 KTAFALVNNDDKNGPVMVQNTKAKKVTYALKSYADYRAQILENQLSG------LLLKVQD 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F YN L + +D L+ L +L V GRF+ + Sbjct: 284 QEVWVKLIGSFNAYNLLAIFAAAELLELDQMEALQLLSELESVSGRFQ-YFISEGNVTAI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I I + I V G GGDRD KRP MG IA L+ AI+T Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVIGAGGDRDTTKRPKMGNIASALSTKAIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSE+PE I +I G+ + +R +AI+TA ++ N D++++AGKGHET Sbjct: 403 DNPRSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + NGE+ D I++E L Sbjct: 463 QEI-NGERFDFDDYKIVQETL 482 >gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] Length = 490 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 146/499 (29%), Positives = 222/499 (44%), Gaps = 25/499 (5%) Query: 7 IYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K L+ L + + INEV DSR +FVA+ G + DGH FIPQ + Sbjct: 5 TSKTLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQ 64 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 G A+VV + + I+ V N+ + L AS Y + + VTGT Sbjct: 65 AGISALVVET------IPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGT 118 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ + + + G + + I+S + TTP + + L+ + G Sbjct: 119 NGKTTTVTLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGC 178 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH +DQ R+ G+ FTN+ DH+DYH T Y AK F + L K + Sbjct: 179 EYAFMEVSSHAVDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKK-SFFDQLSKRA 237 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ DD + + + R + + + Sbjct: 238 FALVNIDDKRGMVMTQNTAASVNRYSLRQMAEFRARIIENSLTGLHLDIDNQDFYGRLIG 297 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 F YN L + + D L L +L GRF++V R VDY Sbjct: 298 EFNA------YNLLAVYATAVLLEQDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDY 351 Query: 363 AHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 AHT ++LE +L+ I+ + +++ V GCGGDRD+ KRP M K+A +D I+T DNP Sbjct: 352 AHTPDALEKVLETIQALRKADAKVLTVVGCGGDRDRTKRPTMAKVACQYSDQVILTSDNP 411 Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+PE I E+ G+P + +R EAIRTA + DV++VAGKGHE + Sbjct: 412 RSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKGHEKYQEI 471 Query: 476 TNGEKKMSVDCDIIREILG 494 G K D +I++E Sbjct: 472 K-GVKHPFDDKEILKEEFS 489 >gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya dadantii Ech703] gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703] Length = 494 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 24/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ ER + E++ DSR AG +FVA+VG+K DG +IP Sbjct: 5 NLRDLLAPWVA-----------NAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AIV + + + + P++ +D+ + LS A R Y + ++ Sbjct: 54 QAIAQGVAAIVAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A + Q Q G +S +G TT S + + + LS Sbjct: 114 VTGTNGKTTTAQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG ++E SSHGL QHR++ + A +FTNL RDH+DYH Y AK RLF E Sbjct: 174 AQGAQVAAMEVSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + A+I ADD + ++R + R + +++ +V ++ V Sbjct: 234 VGQ--AVINADDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDS 291 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 L G F V N L++ +++G ++ L V GR E + R Sbjct: 292 SWGQGVIDSSLMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRP 351 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD IV Sbjct: 352 T-VVVDYAHTPDALEKALEAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLADRVIV 410 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPRSEDP+ I ++I+ G+ R EA+ +AI DV++VAGKGHE Sbjct: 411 TDDNPRSEDPQAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKGHEDY 470 Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497 +V N D + +LG+I+ Sbjct: 471 QLVGNERLDY-SDRITVARLLGVIV 494 >gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii NCTC 11218] Length = 495 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 161/495 (32%), Positives = 249/495 (50%), Gaps = 10/495 (2%) Query: 7 IYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K +LI+ L+I + + DSRHIQAG FVAI+G+ DG FI +AI Sbjct: 3 TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA ++ + S R P++ ++ K LS A RLYG H +++AVTGT+G Sbjct: 63 QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++++ + Q G + +G T S Q TT + + + L L+ QG + Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + AG F+NL RDH+DYH T A A +L + A Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDA--YADAKLSLFTEHETRQA 240 Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 II DD ++ H G + + + + +V + + + Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLR 300 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL GEF N ++A +++G + +L +L V GR E ++ VDYA Sbjct: 301 APLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELF-QAPGKAKVVVDYA 359 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ +R G++ +FGCGGDRD GKRP+M IA AD I+TDDNPRSE Sbjct: 360 HTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSE 419 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP+ I +++ G+ + NR +A+RTA+ +QD++++AGKGHE ++ + Sbjct: 420 DPQAIVNDMLAGLKAPQHANVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDTI 479 Query: 481 KMSVDCDIIREILGL 495 D + + +L L Sbjct: 480 HY-SDRESAQTLLEL 493 >gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] Length = 487 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 246/507 (48%), Gaps = 33/507 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++Y + + ++ +++ V DSR + A +FVA G + +GH+F Sbjct: 1 MKVLKDILYGVSIDQLQGSTL-------KEVQGVYFDSRKVVAQSLFVATKGVQVNGHIF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I AI +GA +V D + +VV N+++ L + A+ + + + Sbjct: 54 IETAIEKGATVVVCE------DLPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V S + + ++G S I + A + TTP + L Sbjct: 108 IGVTGTNGKTTVTSLLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + S+G++H +E SSHG+ Q R+ G+ FTNL +DH+DYH+T Y + K LF+ Sbjct: 168 MVSEGLSHCFMEVSSHGIAQMRIKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDG 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L + A++ +DD +++ G + + ++ Sbjct: 228 -LSTTAFALVNSDDKNGLFMLQNTKAKKMSYGLKGVADFKAQILENQFSGQLLKIDQQEV 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F YN L +G+++ VL+H+ L V GRF+ + Sbjct: 287 WTTLLGQFNA------YNILAIYATATLLGLNTLEVLQHISTLENVAGRFQ-YFISKNQI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ IL+ I I + ++I V GCGGDRDQGKRP+MG IA + +D I Sbjct: 340 TAIVDYAHTPDALDNILETIGQIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPRSE P I ++ G I + NR +AI+TA M +D++++AGKGH Sbjct: 400 LTSDNPRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 E + G K D +I++ L L+ Sbjct: 460 EKYQDIK-GVKTPFDDYEIVKNHLDLL 485 >gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] Length = 488 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 164/494 (33%), Positives = 245/494 (49%), Gaps = 16/494 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I K EL+ + + ++ +S DSR + G +FVA G K G FI A+A Sbjct: 4 ISKTLAELLPEWAEPTHSG--IAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVAD 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A+++ S+ + S + P++ + + + A+R Y + ++ +TGT+ Sbjct: 62 GAVAVLIDSS----ELSDCPNVDVPVIGISDLVSEIGPVAARFYEQPSRAMTVVGITGTN 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S A FV Q G+ + +G + TTP I L K + L + G Sbjct: 118 GKTSCAHFVAQAMNNIGVKTAIVGTVGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAE 177 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L+Q R+ + G FTNL RDH+DYH + +AY AK RLF+E Sbjct: 178 AVVMEVSSHALEQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKE---FNLK 234 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + D + R + R +SVG H + + + +F F Sbjct: 235 AALINGDDSFGRKLLRDESIEARKVSVGRLFGQYHFAAYRLALHGIEAELKTPAGNFAFA 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + GEF + N L+ A L G A V+E L +L VPGR + V + + +DYA Sbjct: 295 SKIIGEFNLDNLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAV-VAADKPLVIIDYA 353 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L +R T+G + VFGCGGDRD GKR +MG+IA LAD +VT DNPR+E Sbjct: 354 HTPDALEKALSAVRAHTTGTLWCVFGCGGDRDAGKRELMGRIADQLADHLVVTSDNPRTE 413 Query: 424 DPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 PE+I I GI + +R AIR AI + +DV+++AGKGHE V ++ Sbjct: 414 SPERIIEMIEQGICQHEPAIEADRAAAIRLAIMQASPEDVVLIAGKGHEDYQEVGT-KRY 472 Query: 482 MSVDCDIIREILGL 495 D ++ +LG+ Sbjct: 473 PFSDLEVSMRLLGV 486 >gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] Length = 471 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 234/472 (49%), Gaps = 14/472 (2%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR +G +FVAI G+ DG FIPQAIAQG A++ + +D T P++ Sbjct: 3 LDSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIY 62 Query: 95 VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + LS A R Y + + + + VTGT+GK++ + Q Q G + +G Sbjct: 63 LAQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGN 122 Query: 153 ISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 TT S + + + L L QG T ++E SSHGL QHR+ + A +FTN Sbjct: 123 GLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTN 182 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268 L RDH+DYH Y AK LF E + ADD + +++ +A + Sbjct: 183 LSRDHLDYHGDMARYEAAKWLLFSEHQVGQIIVN--ADDEVGRRWLQKLPDAVAVTMEDN 240 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G G+++ +V N ++ + + L G F V N LVA G +A+G Sbjct: 241 IDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLLALGY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 ++ +L V GR E + + VDYAHT ++LE L+ R +G++ V Sbjct: 301 PLDSLIATGNQLQPVTGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCTGKLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FGCGGDRD+GKRP+MG IA +D+ ++TDDNPRSEDP I A+I+ G+ Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGLLDAGRARVMPG 419 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R +A+ + + D+++VAGKGHE IV N D + +LG+I Sbjct: 420 RAQAVTNTVMQAQEGDIVLVAGKGHEDYQIVGNRRLDY-SDRITVARLLGVI 470 >gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 487 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 236/484 (48%), Gaps = 14/484 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDI 416 Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G + R +AI I + DV+V+AGKGHE + +G++ D Sbjct: 417 RPGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475 Query: 490 REIL 493 + L Sbjct: 476 AKAL 479 >gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] Length = 479 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 156/483 (32%), Positives = 233/483 (48%), Gaps = 19/483 (3%) Query: 13 ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L+ L +Q E +I + DSR I G IFVA+ G DGH FI AI +GA+ I Sbjct: 3 KLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLI 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS Q +++ N RK L + AS YG +NI + T + Sbjct: 63 IVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTT 115 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + G I + TTP + L + + QG+ ++ +E S Sbjct: 116 TYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVS 175 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH L+ R++ ++ FTNL DH+DYH+T + YF AK +LF +L K + DD Sbjct: 176 SHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVL-NVDD 234 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 Y + + + H G + + K + K++V +S+ GK + + G F Sbjct: 235 EYGRRLQEEFHGIS-----YGTKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQILGGF 289 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YN L + L +G+ + +E L PGRFE V + +DYAHT ++LE Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMVVIDYAHTGDALE 348 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 IL+ I+ I + +II +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I Sbjct: 349 NILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILE 408 Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 E+ G I R EAI I K D++++AGKGHET I+ +K D + Sbjct: 409 EVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFDDREF 467 Query: 489 IRE 491 R Sbjct: 468 ARR 470 >gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] Length = 487 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 159/485 (32%), Positives = 239/485 (49%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ Sbjct: 3 LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY + + ++ P++ V K LS A R YG+ N++ VTGT+GK+SV Sbjct: 60 -AYEVDGATVLPITDVPLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q TTP+PI + L+ L G V++E SS Sbjct: 119 VAQALDLLGQHCGIVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + TNL RDH+DYH T +AY AK +LF K + DD Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCRVVNL--DDE 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + + + S+ +++ ++ + T+ + L G F Sbjct: 237 FGRHLAAQDSESRLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + + +L L KL GR + +G + + VDYAHT ++LE Sbjct: 297 LSNVLAAIGALLGLDYALDEILNVLPKLEGPAGRMQRLGGGEQPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R G+++ +FGCGGDRD+GKRP+M +I LAD +VTDDNPR+EDP +I + Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQIFDD 415 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G R AI I + DV+V+AGKGHE + NGE+ D Sbjct: 416 IRAGFKDASKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474 Query: 489 IREIL 493 L Sbjct: 475 ADHAL 479 >gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] Length = 488 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 130/499 (26%), Positives = 224/499 (44%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ L + + P Q ++++ DSR +Q +FV I G DGH + Sbjct: 1 MYAEELLSALP--LKKIIGVLPDQ-----VSDIVIDSRSVQPNSMFVCIKGYTVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA +V L + ++V +T + + L A++ + + ++ Sbjct: 54 QKAVDGGATIVVTERELPLGET-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV +Q I G S G + ++ TT + + + Sbjct: 107 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235 +G +++E SSHGL RL G+ FTNL DH+D+H T + Y +AK + Sbjct: 167 KMEGCRLMTMEVSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +++ ++ D E + + + + Sbjct: 227 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEM 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L GEF +YN L A G ++E +E+L V GR E V + Sbjct: 287 PEGIYRVKMNLLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKV-CSELP 345 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +I++DYAHT +++E ++ + G++I + G GG+RD+ KRP M + A A+ I+ Sbjct: 346 VQIFIDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 404 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T D+PR ED + I ++ G+ + G+R EA+R A+E+ D+++ AGKGHE Sbjct: 405 TTDDPRYEDYDSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKGHEDYQ 464 Query: 474 IVTNGEKKMSVDCDIIREI 492 I+ N K D +I E Sbjct: 465 IIEN-TKFPHSDAEIAIEA 482 >gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 495 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 150/511 (29%), Positives = 239/511 (46%), Gaps = 37/511 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L +I+ + +I + +DSR ++ G +F+ + G+ DGHLF Sbjct: 1 MKLKQLSSVLAAAVIDGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHLFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA +GA A+VV + + P ++V ++R ++ A+ + + ++ Sbjct: 54 AQAAEKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANTFFDQPSARMKMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I GL + IG + + TTP + L + L+ + Sbjct: 105 GVTGTNGKTTTTYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231 ++ G +E SSH L+Q R+ G FTNL +DH+DYH T + Y AK Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224 Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 F + A++ ADD S K + Sbjct: 225 GNAFAKDEKSRKYAVLNADDDASAYFAKITAAEVITYGLGEDADV--RASNISITAQGTS 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + D + G+F VYNA+ A + G+ + LE + V GR E V Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVV- 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDYAHT + LE +L+ + GR++ VFGCGGDRD+ KRPIMGKIA + Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+ +VT DNPR+EDP+ I +I G+ + +R +AI AIEM + DV++ Sbjct: 402 DVVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVL 461 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHET ++ GE D + ++ + Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491 >gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] Length = 483 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 149/478 (31%), Positives = 238/478 (49%), Gaps = 15/478 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + I +E + + DSR I+ G IFVA+ G DGH +I QA+ GA+ ++VS Sbjct: 9 EYEILKDVAKEEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKK 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + + + RK L + AS Y + + + T + Sbjct: 69 VEAAFP-------VKYIWIKDLRKKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIE 121 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + + K +G+ ++ +E SSH LD Sbjct: 122 SILGSNKTARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALD 181 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D ++ FTNL DH+D+H+T + YF AK +LF + + D Sbjct: 182 LGRVDMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG- 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 KR + + + + + V + Q+V + ++ + G + VYN Sbjct: 241 --KRLSSEFGGISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNV 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + +GI+ +VLE +++L PGR+E V + VDY+HTS++LE ILK+ Sbjct: 299 LGAISIALLLGIEKEIVLERIKELKGAPGRYELVNCGQ-NFTVIVDYSHTSDALENILKS 357 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KRP+MG+IA L+DIAIVT DNPR+EDP KI +++ G Sbjct: 358 INELKKGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEG 417 Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + I + +R AI A+E+ ++D++++AGKGHET I+ +K D +I R Sbjct: 418 MKGKNHIVEEDRDHAISKAVELAEEKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474 >gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] Length = 491 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 147/503 (29%), Positives = 241/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +F+ + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++ A++ +DD ++E M+ I K + T Sbjct: 225 GNSYNHNRKKYAVLNSDDPVAEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + D L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I ++I G + +R EAIR AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ E D ++ +E + Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483 >gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] Length = 492 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 159/465 (34%), Positives = 229/465 (49%), Gaps = 13/465 (2%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR + G IFVA+ G + DG +I QA+AQGA ++ + + + S S++ Sbjct: 29 HMTLDSRKVGEGDIFVALPGVQRDGRDYIKQALAQGAALVLAEA--NDFNISTDADSSSR 86 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ V + L A YG + + +AVTGT+GK+SV FV Q+ + G+ + +G Sbjct: 87 IMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVGT 146 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + A D TTP + + L+ QG+ HV++EASSH L Q RL + L G Sbjct: 147 LGSRLEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSLHTGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH Y A +L AI ADD + +V+ A + + Sbjct: 207 FTNLTRDHLDYHGNAADY--AAAKLSLFNTFNLKRAIFNADDPVASQVLAVAGASAIGIT 264 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + + I + L G F +N + A +G D Sbjct: 265 LEGAEAHVQVAIR---SMRPMLLEIQSPWGAAEINLALSGRFNAFNVVAAIVAVTGLGHD 321 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 V E L VPGR E + + VDYAHT ++LE L+ +R T GR+ VVF Sbjct: 322 FHRVCAAAESLKPVPGRMERILMSG-NRLAVVDYAHTPDALESALQTLRGETKGRLWVVF 380 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIE 447 GCGGDRD GKR +MG+ A AD +VT DNPR E PEKI ++I G +R E Sbjct: 381 GCGGDRDSGKRSLMGRSAARWADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAE 440 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 AIR A+ + D ++VAGKGHE + G + D ++ E+ Sbjct: 441 AIRHALALAESGDTVLVAGKGHEDYQDIA-GVRLPFSDQRVLSEL 484 >gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] Length = 495 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 157/502 (31%), Positives = 240/502 (47%), Gaps = 20/502 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ + Q ++ ++ + ++S G +F+ I G + DG F Sbjct: 1 MNLRELLA--------VIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFW 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P A+A GA A ++S + + S+ ++ N K + + YG E I+ Sbjct: 53 PSALAAGAVAAIISPQAASKTSPT---SDALVITASNLNKVCAQVCAAFYGYPAEKLQIV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++ L + +G F+Q TTP I L L+ Sbjct: 110 GVTGTNGKTTTTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQA 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH L Q R+ G FTNL +DH+DYHQ + YF AK LF Sbjct: 170 VDAGCQLGIMEVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPD 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A+I DD Y + + S+ + + + + Sbjct: 230 -YLQGRAVINIDDQYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPE 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 + F PL G++ + N L A + +G+D V++++ VPGR E + Sbjct: 289 GNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDI 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GRII VFGCGGDRD+ KRP MG+IA DLAD+ +VT Sbjct: 349 SVIVDYAHTPDSLENLLKAARPFIPGRIICVFGCGGDRDKTKRPKMGRIAADLADVVVVT 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P+ I +I+ G+P + G+R AI TAI D +++AGKGHE Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQ 468 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ EK D + R+ L L Sbjct: 469 ILGT-EKIHFDDREQARDALHL 489 >gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15] Length = 485 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 232/476 (48%), Gaps = 14/476 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I+ + +DSR + +G F+A+ G + ++ +AIA GA I++ + Q T Sbjct: 12 DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLE---AQQAGECTE 68 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 I+ V R + A R + + + + VTGT+GK+SV +V Q+ + +G Sbjct: 69 HHGALIVPVAGLRSLVGRIADRFFEHPSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPC 128 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + Q TTP + + + LS + Q +E SSH LDQ R+D + Sbjct: 129 GILGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLS 188 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTNL RDH+DYH + +AY AK +LF+ S DD + +++ ++ Sbjct: 189 MTGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSVINF--DDPFGRQLFEQLDGK 246 Query: 264 GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV + L++ + + E F PL G F N L A Sbjct: 247 CDRVRYSLHEAQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + +G+ V + + +L PGR E + G R+ VDYAHT ++L L +R +G Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERF-VGANGVRVVVDYAHTPDALANALTALRPHVTG 365 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 ++ VFGCGGDRD GKRP M + A LAD +VTDDNPRSEDPE I I+ G Sbjct: 366 ELVCVFGCGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETIAEHILAGFTDAARV 425 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R EAIR+ I DV+++AGKGHE + G+K D + +R +L L Sbjct: 426 SVIHDRAEAIRSTIRSATPNDVVLIAGKGHEAYQEIA-GQKYPFSDAEQVRHVLKL 480 >gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 485 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 181/490 (36%), Positives = 262/490 (53%), Gaps = 14/490 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K L + + P + ++ + + DSR + G++F A G K +G FI +AIA Sbjct: 4 TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIA- 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 + A ++ LV +N R + A+R Y P + AVTGT+GK Sbjct: 62 -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SVA +Q+ +G + IG + + +TTP + S L+ ++HV Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 EASSHGLDQ+R DG K+IAG+FT+ RDH+DYH T + Y AK+RLF+E + + A+ Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I+ADD + V+ G +++ + + I L A Q +T+S++G+ + P Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDIWK-AEAIRLVNREADSQGQMITLSIKGESYKIRLP 293 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G +Q+ N LV AGL +A G D + L L V GR E + G +YVDYAHT Sbjct: 294 LIGGYQLSNGLVRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 353 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L ++ +R T G + VVFG GGDRD+GKRP MGKIA +LAD IVTDDNPR ED Sbjct: 354 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 413 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482 IR E++ G P E G R EAI +AI+ K D++++AGKGHE I+ GE Sbjct: 414 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 473 Query: 483 SVDCDIIREI 492 D + +E Sbjct: 474 FDDVTVAKEA 483 >gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Laribacter hongkongensis HLHK9] gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9] Length = 491 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 15/467 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+SDSR + G +F+A G DG +I AI++GA A+ A + N P Sbjct: 26 VTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNLP- 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V + R + AS L G+ E ++ VTGT+GK+S+ +++ Q G + IG Sbjct: 85 --VPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 D TTP P+ + + L+ QG V++E SSHGLDQ R++G+ F Sbjct: 143 GNGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH + AY K RLF + A+I DD + +E+ R Sbjct: 203 TNLTRDHLDYHGSMAAYGATKERLFHWQGLQH--AVINVDDQFGRELASRCTAGQVITY- 259 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + V A + ++ G F N L + G+ Sbjct: 260 -GLEHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGVPL 318 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVV 387 L ++ GR + VG + +DYAHT ++LE L + I GR+ V Sbjct: 319 TQACRVLGQIQPARGRMQRVGGTREPL-VVIDYAHTPDALEKALSTLADIKPAGGRLFAV 377 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRI 446 FGCGGDRD+GKRP+MG IA AD+ +VT DNPR+E P+ I +I+ G+ + +R Sbjct: 378 FGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILAGMRQPTQVEPDRR 437 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI A+ DV++VAGKGHE + G K D L Sbjct: 438 AAIHWAVAQARVGDVVLVAGKGHEDYQDIQ-GVKHSFSDVREAEAAL 483 >gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] Length = 495 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 165/503 (32%), Positives = 243/503 (48%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DL+ P ER + E++ DSR +G +FVAI G+ DG FIP Sbjct: 5 KLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + +D P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEAEGEAEDGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A +FTNL RDH+DYH Y AK LF E Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHN----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + +++ + L G G+++ KV +V S Sbjct: 234 VGQ--AIINADDKVGRRWLEKLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + D L G F V N LVA +++ A + +L V GR E + Sbjct: 292 SSWGEGDIDSRLMGAFNVSNLLVALATLLSLDYPLAALTATASQLQPVTGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALTAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP I ++I+ G+ R +A+ + + D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + D D + +LG Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLG 492 >gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 479 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 158/483 (32%), Positives = 235/483 (48%), Gaps = 19/483 (3%) Query: 13 ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L+ L +Q E +I + DSR I G IFVA+ G DGH FI AI +GA+ I Sbjct: 3 KLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLI 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS Q +++ N RK L + AS YG +NI + T + Sbjct: 63 IVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTT 115 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + G I + TTP + L + + +G+ ++ +E S Sbjct: 116 TYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVS 175 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH L+ R++ ++ FTNL DH+DYH+T + YF AK +LF + L ++ I+ DD Sbjct: 176 SHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-LRGKAIKILNVDD 234 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 Y K + + H G QGK + K++V +S+ GK + + G F Sbjct: 235 EYGKRLQEEFHGISYGTKQAGVQGKI-----LGFEGGKERVELSLFGKKKECKIQILGGF 289 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YN L + L +G+ + +E L PGRFE V + +DYAHT ++LE Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMVVIDYAHTGDALE 348 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 IL+ I+ I + +II +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I Sbjct: 349 NILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILE 408 Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 E+ G I R EAI I K D++++AGKGHET I+ +K D + Sbjct: 409 EVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFDDREF 467 Query: 489 IRE 491 R Sbjct: 468 ARR 470 >gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 249/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + R + E+ DSR AG +FVAIVG+K DG +IP Sbjct: 5 NLRDLLAPWVQD-----------TPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D + P++ + N + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G A TT S + + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH ++Y AK LF E Sbjct: 174 DQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + +A + G +G+++ ++ N V Sbjct: 234 VGQMVIN--ADDEVGLRWLAKLPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +++G ++ +L V GR E ++ Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSE+P+ I A+I+ G+ R EA+ +AI + DV++VAGKGHE Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494 >gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] Length = 487 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 160/504 (31%), Positives = 247/504 (49%), Gaps = 33/504 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++YK E + + + E+ DSR +Q +F+AI G + DGH + Sbjct: 1 MKTLKDILYKVHIEAVTGDTT-------IAVRELVFDSRKVQLNDVFIAIKGYEVDGHSY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +AI GA A++ + I + + VDN L++ AS YG E + Sbjct: 54 IEKAIKAGAIAVICE------EIPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++A+ + Q+ +++G + + TTP + + L Sbjct: 108 IGVTGTNGKTTIATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQK 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +GV + +E SSHG+ Q R G+ G FTNL DH+DYH T Y + K + F+E Sbjct: 168 MNHEGVEYCFMEVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPKE+ ++ DD +M+ Y + + + ++ Sbjct: 228 -LPKEAFCLVNIDDKNGLVMMQNTKAKKYTYALKTYADYRAQILENRLAG------LLLK 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G F YN L +G++ +L + +L V GRFE + Sbjct: 281 INDNEVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFE-YFISKNKI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L+ I I +G I V GCGGDRD KRP MG IA L+ AI Sbjct: 340 TTIVDYAHTPDALKNVLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTLSTKAI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPRSEDP I I G+ + +R +AI+TA +M N+ D++++AGKGH Sbjct: 400 FTSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET + NG++ D I +EIL Sbjct: 460 ETYQEI-NGKRSDFDDYKIAKEIL 482 >gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] Length = 484 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 160/503 (31%), Positives = 249/503 (49%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++LI E+++ ++N ++ DSR ++G +FV + G K DGH FI Sbjct: 1 MLLKELIKDL--EIVDVTGDL-----NLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 PQAI G A++V + + ++ VD+TR L+ A + +G N++ Sbjct: 54 PQAIENGTRALLVQREVEVPE-------GITVIRVDDTRYALASVADKFHGHPSGDFNLV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ I + G + IG + I TTP L + + Sbjct: 107 GVTGTKGKTTTTYMIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V V +E SSH LD HR+ + G FTNL RDH+D+H+T + Y AK++LF+ Sbjct: 167 VEKQVNSVVMEVSSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMC 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + I + + + + Sbjct: 227 KKGLINV------DSEYGRKVVENAECEVYTFGIDSSADIRAVDIVKHPDSVEFKVITPW 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D +PG+F VYNAL A G C +GI + + L+ + V PGR E V T + Sbjct: 281 FTGDIAVNIPGKFSVYNALGAIGSCALMGIPLEYIQKGLKNVTV-PGRAEVVQTGT-DYT 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +DYAH+ +SLE IL ++ R+I +FGCGGDRD+ KRPIMG+I+ LAD ++T Sbjct: 339 IIIDYAHSPDSLENILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITS 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P I +I GI +I +R EAI+ A++ +D++V+AGKGHET Sbjct: 399 DNPRTEEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKGHETY- 457 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ N + + +++REIL + Sbjct: 458 IMLNDKTIHFDEREVVREILDEM 480 >gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 487 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 153/501 (30%), Positives = 244/501 (48%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + + I + DSR + +FVA+ G + DGH +I + Sbjct: 4 LKDILYKVTLETVVGNTA-------VAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+ QGA AI+ + I + + V +T L+ AS YG ++ + Sbjct: 57 AVNQGALAIICE------ELPEQIVNGITYVKVADTSSALATIASNFYGNPSANLKLIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++AS + Q+ Q++G + + + TTP + + K L+ +S Sbjct: 111 TGTNGKTTIASLLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSE 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV + +E SSHG+ Q R +G++ G FTNL DH+DYH T Y + K + F+E LP Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE-LP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + A++ DD +++ Y + + + ++ +D Sbjct: 230 KTAFALVNTDDKNGAVMVQNTKAKKVTYALKSYADYKAQILENQLSG------LLLKIQD 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F YN L +G+D L+ L +L V GRF+ + Sbjct: 284 QEVWVKLIGSFNAYNLLAIFATAELLGLDQIEALKLLSELESVSGRFQ-YFISEGNVTAI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I I + I V G GGDRD KRP MG IA L+ I+T Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGAGGDRDTTKRPKMGHIASALSTKTIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSE PE I ++ G+ + +R +AI+TA ++ N D++++AGKGHET Sbjct: 403 DNPRSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + GE+ D I++E L Sbjct: 463 QEIM-GERFDFDDYKIVQETL 482 >gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 496 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 164/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + + ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+ Sbjct: 4 RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + A + G+ G ++ +V N + + Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA +++G +L L V GR E + VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+ Sbjct: 361 TPDALEKALVAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G+ R EA+ +AI DV+++AGKGHE +V N Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILG 494 D + +LG Sbjct: 481 Y-SDRVTVARLLG 492 >gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 498 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 159/499 (31%), Positives = 250/499 (50%), Gaps = 26/499 (5%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E++ + + E ++ ++ DSR G++FVA+ G + DGH +I A+ GA Sbjct: 3 FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A+++ L D+ V ++RK L+L ++R Y ++ VTGT+GK+ Sbjct: 63 AVILQKDMILPDY-------IAWARVPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + A ++ + + +G + IG + I + + TTP L LS + GV V+ Sbjct: 116 TTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVA 175 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----PKE 241 +E SSH L+ HR+DG + FTNL +DH+D+H+ + Y AK LF L Sbjct: 176 MEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGA 235 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AII ADD + + + + V + + + T++ Sbjct: 236 KYAIINADDEAAARLTRLSGGQVITYGMVKKADII--AENITVRADGASFTVASRQGKVT 293 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F VYNAL A + + G ++ LE + VPGRFE V + + VD Sbjct: 294 INLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELV-DEGQDFAVIVD 352 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + L IL R T+G++I VFGCGGDRD+ KRP+MG+I+ L+D IVT DNPR Sbjct: 353 YAHTPDGLRNILNTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSDFTIVTSDNPR 412 Query: 422 SEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ED ++I +I+ GI +E +R AI+ A+ DV+++AGKGHET I+ Sbjct: 413 REDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIAGKGHETYQII 472 Query: 476 TNGEKKMSVDCDIIREILG 494 + + D + +R+ L Sbjct: 473 GD-VRYAFDDREEVRQALR 490 >gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] Length = 462 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 232/475 (48%), Gaps = 25/475 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I G +F+A+ G + DGH +IP AI +GA A++ + +++ Sbjct: 2 EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLCE------ELPEELKA 55 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG + + VTGT+GK++VA+ + + G Sbjct: 56 GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGL 115 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + I TTP PI L + L ++ G + +E SSH + Q R+ G+K Sbjct: 116 VSTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFA 175 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTNL RDH+DYH+T + Y AK + F+E LPK + ++ DD + + + Sbjct: 176 GGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRSKVY 234 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + + + + G+F YN L G + + Sbjct: 235 TYSLRSLSDFKGKVLESHFEGMLL------DFNNHELAVRFIGKFNAYNLLAVFGTAVLL 288 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383 G VL L LH V GRF+ + +G VDYAHT ++L +L I + G+ Sbjct: 289 GKKEEDVLVALSTLHPVTGRFD-AIRSPKGYTAIVDYAHTPDALVNVLNAIHGVLEGKGK 347 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----G 438 +I V G GG+RD+GKRPIM K + L+D I+T DNPR E+P+ I +++ G+ Sbjct: 348 VITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLDKDDMQK 407 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R EAI+TA + DV++VAGKGHE + G K D +I+ EI+ Sbjct: 408 TISITDRREAIKTACMLAQPGDVILVAGKGHENYQEIK-GVKHHFDDKEILNEIM 461 >gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] Length = 486 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 234/504 (46%), Gaps = 32/504 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++Y E + + E +I+++ DSR + G +FVAI G + DGH F+ Sbjct: 4 LKDILYGVAIEQV-------VGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKD 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 GA+A +V + I + V N+ L + AS Y ++ V Sbjct: 57 VTENGAKAAIVET------LPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V + + ++ ++ G + + + I+ TTP I L + L+ + Sbjct: 111 TGTNGKTTVCTLLYKLFKKLGYNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G + +E SSH + QHR+DG++ G FTN+ DH+D+H+T Y AK F + L Sbjct: 171 AGCEYCFMEVSSHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKK-GFFDNLT 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ A+ DD +++ + + + ++ Sbjct: 230 SKAFALTNVDDRNGNVMLQNTRAHKKTYALNAVADFKAKIIENLFSG------LHLDIDG 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F L G F YN L G + + D VL L L GRF+ Sbjct: 284 MEVYFRLVGSFNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEGRFD-YIIAPNKVIGI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L IL I I+SG II V GCGGDRD+ KRPIM + A D + I+T Sbjct: 343 VDYAHTPDALRNILSTIENISSGTESIITVVGCGGDRDREKRPIMAQTACDWSHKVILTS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E PE I +++ G+ + +R EAI+ A + D++++AGKGHE Sbjct: 403 DNPRTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKGHEKY 462 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 + NG + D I+ E L+ Sbjct: 463 QEI-NGVRTDFDDKQILTEQFNLL 485 >gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] Length = 532 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 154/520 (29%), Positives = 242/520 (46%), Gaps = 40/520 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + I+ + DSR + +G +FV +G DGH F+ Sbjct: 1 MTLTELLDE-----AKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 PQA QGA IV + + + +++V +T LS A YG+ E+ ++ Sbjct: 56 PQAAEQGAVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + ++ I + GL + IG S QD TTP +YL K ++ Sbjct: 110 GITGTNGKTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMAT 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +E SSH L Q R I FTNL RDH+DYH+ + +Y AK +LF Sbjct: 170 MVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFAS 229 Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ ++ DD + + + V + +H + + V + Sbjct: 230 MVDPARHRKVVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKT 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + L G VYN L A + IA+ ++ +E++ VPGR E V + Sbjct: 290 PRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQP 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++L +L +R RII V GCGGDRD+GKRP+M KIA +++ I Sbjct: 349 FAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIF 408 Query: 416 TDDNPRSEDPEKIRAEIIHGI----------------------PGFIEKGNRIEAIRTAI 453 T DNPRSEDP +I +++ G+ R A+R A+ Sbjct: 409 TSDNPRSEDPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAV 468 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 M + D +V+AGKGHE I+ E+K D + RE L Sbjct: 469 AMGEEGDAVVIAGKGHEKYQIIG-KERKYHDDREECREAL 507 >gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] Length = 494 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 157/495 (31%), Positives = 240/495 (48%), Gaps = 10/495 (2%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++L L L I + + + DSR + G FVAI G+ DG FI A Sbjct: 3 KELTLATL--LAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA AI+ + S I+ +D + LS AS LY ++ VTGT Sbjct: 61 IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+++ + Q G + +G T + Q TT + I + + L L QG Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++E SSHGL Q R+ + G F+NL RDH+DYH T + Y AK LF++ Sbjct: 181 QYTALEVSSHGLVQGRVKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQHT--CK 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I DD +KR +A L+ + + + V + I +F Sbjct: 239 TAVINIDDQVGASWVKRLDSAIAVSLNPTDHPRAVWAESVSYSEAGISLVIDGLFGRGEF 298 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L GEF N L+A +A+G+D +L+ L V GR E + ++ VDY Sbjct: 299 TIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELFTAS-DKAKVVVDY 357 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE LK +R G++ +FGCGGDRD GKRP+M I +LAD I+TDDNPRS Sbjct: 358 AHTPDALEKALKALRVHCHGKLWGIFGCGGDRDTGKRPMMAAIGEELADKVILTDDNPRS 417 Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E P I +++ G+ I + NR +A++ A+ +QD++++AGKGHE ++ + Sbjct: 418 ESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAGKGHEDYQVMADKT 477 Query: 480 KKMSVDCDIIREILG 494 D + +++L Sbjct: 478 IHY-SDRESAQQLLE 491 >gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia canadensis str. McKiel] gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel] Length = 478 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 157/485 (32%), Positives = 257/485 (52%), Gaps = 23/485 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L +++ I +S++S++I+ G +F A+ G DG+ FI A+ +GA ++ + Sbjct: 2 LFNLKQLFQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLVITDNEK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 + ++ V++ +K L Y K P++++AVTGT+GKSSV S++ Q+ Sbjct: 62 NTAINK--------VIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQLY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG + LTT + K L+ G+ +++ EASSH Sbjct: 114 SLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL K+ FT+ DH+DYH T++ Y AK++LF L + +I+ +D Sbjct: 174 GLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + + + ++VG +G + ++ + Q + + + + F P+ G FQ Sbjct: 234 IEFIKAYLNKHNIKFITVGIKGDL-QITRINSSLKGQNIDFTFNNRKYSFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+AA G+ V+ L + V GR + I+VDY+HT ++LE Sbjct: 293 SNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQ----IENTNIFVDYSHTPDALEKA 348 Query: 373 LKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ V+FGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRA Sbjct: 349 LLELKNIQVLGSKLNVIFGCGGNRDKKKRSLMGQIAAKLADNVIITDDNPRLEDPKLIRA 408 Query: 431 EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI +IE NR +AI+ I LN+ D+L++AGKGHE I+ N +K D +I Sbjct: 409 EIISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHENYQIIGN-KKIPFDDAEI 467 Query: 489 IREIL 493 +++ + Sbjct: 468 VKKYI 472 >gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0205] Length = 503 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 152/499 (30%), Positives = 236/499 (47%), Gaps = 19/499 (3%) Query: 11 FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L+ ++ + P + VS DSR + G +FV + G DG F P+A+ GA Sbjct: 5 LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENI--LAVTGTSGK 126 V+ + + A +LVV + ++ L A+ + + + + VTGT+GK Sbjct: 65 LAVIGRSAAEARPPA---DGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ + G + G + + + TT L L+ + G Sbjct: 122 TTTTYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIA 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244 ++E SSH LDQ R+ G + FTNL +DH+DYH + +AYF AK +LF L E+ A Sbjct: 182 AMEVSSHALDQQRISGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARA 241 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ DD + K++ +R + R + ++ + T+ F Sbjct: 242 VVNVDDPWGKQLAERLGDRCWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFSS 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------ 358 PL G+F + N L A G+ + G+ +LE L VPGR E V Sbjct: 302 PLLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAV 361 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE LK R G++I VFGCGGDRD+ KRP M IA LAD +VT D Sbjct: 362 LVDYAHTPDGLESALKACRPFVEGQLICVFGCGGDRDRTKRPQMAAIAARLADQVLVTSD 421 Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+EDPE+I +++ GIP +R ++I AI M +D++++AGKGHE I+ Sbjct: 422 NPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKGHEDYQIL 481 Query: 476 TNGEKKMSVDCDIIREILG 494 +K D + + L Sbjct: 482 GT-KKVHFDDREEAEKALR 499 >gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 487 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 157/484 (32%), Positives = 233/484 (48%), Gaps = 14/484 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ S ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSSVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDLLGQHCGIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R I TNL RDH+DYH T +AY AK +LF + DD + Sbjct: 180 GLDQGRATAIAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINL--DDEF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ H + S +++ + + + T+ + L G F + Sbjct: 238 GRKLATLKHESRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GASKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPR+E P +I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I + DV+V+AGKGHE + G++ D Sbjct: 417 RPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKGHEDYQEIA-GQRHPFSDLQEA 475 Query: 490 REIL 493 + L Sbjct: 476 AKAL 479 >gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] Length = 484 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 149/496 (30%), Positives = 237/496 (47%), Gaps = 26/496 (5%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + E++N + +Q + +I+ + DSR + G +FVA+ G DGH +I QAI G Sbjct: 2 RYLSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A AIV D A ++V ++ L A+ Y + ++ VTGT+G Sbjct: 62 AVAIVCE------DLPAHTIGEVAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++VA+ + Q+ G + + I+ TTP + L L+ + +QG + Sbjct: 116 KTTVATLLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDY 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSH + QHR++G++ G FTNL DH+DYH+T Y AK F + LPK + A Sbjct: 176 CFMEVSSHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKK-AFFDALPKSAFA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD +++ + + + ++ + + F Sbjct: 235 LTNIDDRNGNIMLQNTRAQRKTYALKSLADYKAKILENQFGG------LLLDIDNEEVWF 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G F YN L G +G D VL L KL GRF+ + VDYAH Sbjct: 289 KMVGSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFD-YIISPNKVIGIVDYAH 347 Query: 365 TSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++++ +L I I G ++I + GCGGDRD+ KRPIM K+A +D I+T DNPRS Sbjct: 348 TPDAVQNVLSTIHDIRKGTEKVITIIGCGGDRDKTKRPIMAKVACQWSDKVILTSDNPRS 407 Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E PE+I ++ G+ I +R EAI+TA + + D++++AGKGHE V Sbjct: 408 EVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHEKYQEVK- 466 Query: 478 GEKKMSVDCDIIREIL 493 G + D + + + Sbjct: 467 GVRSHFDDKEELIKAF 482 >gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] Length = 511 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 208/491 (42%), Positives = 279/491 (56%), Gaps = 21/491 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + E ++ V+SDSR + +G +F A+ G DG +I Sbjct: 27 MKLRELFSDDVA--------IAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYI 78 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAIA GA A+V ++ V N R+ L+L A+R++ + P I AV Sbjct: 79 DQAIANGAVAVVGEQFPDSDHR-------VALVRVANPRRALALAAARMFPRQPATIAAV 131 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G ++ IG + LTTP PI L + + ++ Sbjct: 132 TGTSGKTSVAAFTRQIWQRLGFAAASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAG 191 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ RLDG+++ A FTNL RDH+DYH Y AK+RLF +L+ Sbjct: 192 EGVTHLALEASSHGLDQFRLDGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVI 251 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVE 296 A+I AD +S+ V+ A G R+++VG G L Q++T+ Sbjct: 252 DGGAAVISADHEHSEAVIAAARARGLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFR 311 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G++ PL GEFQ+ NALVAAGL I G D+ V L+ L GR E VG G Sbjct: 312 GRERGLRLPLVGEFQIENALVAAGLAIGTGGDAEQVFAALQHLEGAKGRLELVGDR-NGA 370 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I+VDYAH ++L L+ +R ++IVVFG GGDRD GKRP+MG IA LAD IVT Sbjct: 371 PIFVDYAHKPDALAKALQALRPYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVT 430 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRA I+ G +E G+R EAIRTAI L D L++AGKGHET I+ Sbjct: 431 DDNPRSEDPAAIRAAIMAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKGHETGQIIG 490 Query: 477 NGEKKMSVDCD 487 G D + Sbjct: 491 -GRVLPFSDHE 500 >gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] Length = 485 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 211/498 (42%), Positives = 277/498 (55%), Gaps = 23/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + E + +++DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLRELFGDD--------AAMDAPGGELAVTGLAADSRAVKLGDLFFALAGTKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA AIV A + P + N R+ L+L A+R Y + P I AV Sbjct: 53 DAAIASGAVAIVGEHAPAT--------GRVPFIATPNPRRALALAAARFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG S +TTP PI L + L L+ Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVTPSRTVYGSVTTPDPIELHRELDQLAG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+RLDG+++ A FTNL RDH+DYH T Y + K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295 + A+I D S V++ A+ RV+ VG + I L + Q+VT+ Sbjct: 225 PDGIAVISTDHDCSHTVIEAANARKVRVMRVGRRSDGALAGIRLVEAAIEDFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D V LE L GR E VG G Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGSDPDQVFAALEHLEGARGRLELVG-EHNG 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VDYAH ++L L +R +++VVFG GGDRD GKRP+MG IA D AD+ IV Sbjct: 344 APVFVDYAHKPDALAKALLALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ G E G+R EAIR AI L D L++AGKGHET IV Sbjct: 404 TDDNPRSEDPAAIRAAILAAARGACEIGDRAEAIRGAIAGLQPGDALLIAGKGHETGQIV 463 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + L Sbjct: 464 GD-RVLPFSDHEAAVAAL 480 >gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae O395] gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] Length = 512 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] Length = 492 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 144/492 (29%), Positives = 226/492 (45%), Gaps = 20/492 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L L + +++ + DSR + G +FVAI G++ DG FI +AI GA AI Sbjct: 2 RDLKAILKYIEIDAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVAI 61 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + P+ +V K L ASR Y + + + VTGT+GKS+ Sbjct: 62 IADRLCEFETSFE------PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKSTT 115 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + Q S IG TTPS + L + L+ L Q V++E Sbjct: 116 TAMIAHLAQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH Y +AK+ LF++ + ++ Sbjct: 176 VSSHGLVQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKD--FEPELVVLNQ 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + +++ +F++ V ++ D Sbjct: 234 DDGQTDQWLEKYSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIKS 293 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GEF +YN A + +G A ++ +L V GR + + VDYAH Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTC-IVDYAH 352 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +L + L+ ++ G + VFGCGGDRD+GKR +M + A AD I+T DNPRSE+ Sbjct: 353 TPEALALALQALQQHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNADKVIITSDNPRSEN 412 Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A++ G+ + +R AI AI +V+++AGKGHE I+ + Sbjct: 413 PDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKGHEDYQIIGDQRID 472 Query: 482 MSVDCDIIREIL 493 D +++ L Sbjct: 473 -FCDRRYVQQQL 483 >gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] Length = 495 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 166/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLGPWVPT-----------APRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + +D + PI+ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G + TT S + L L+ L+ Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A F+NL RDH+DYH Y AK LF Sbjct: 174 EQGATFAAMEVSSHGLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAGHD 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + + +A + G G+++ + N + S Sbjct: 234 VGQMIVN--ADDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G ++E +L V GR E Sbjct: 292 SNWGDGEIASQLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVF-NAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R GR+ VFGCGGDRD+GKRP+MG IA AD + Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPR+E+P+ I +I+ G+ + R EA+ +AI +QDV++VAGKGHE Sbjct: 411 LTDDNPRTEEPQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG + Sbjct: 471 YQLVGNRRLDY-SDRATVARLLGRL 494 >gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 491 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHDREKYAVLNNDDAVTPEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ V++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++ G + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] Length = 471 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 234/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG A+V + D S P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238 Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G++G ++ +V N ++ F L G F V N LVA +++ Sbjct: 239 NNVPAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L +L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAQLLAAAPQLLPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+V+AGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKEDDVVVIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470 >gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] Length = 487 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 155/485 (31%), Positives = 243/485 (50%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ IFP + I E++ DSR+++AG +F+A+ G + DG I A+ +GA A+ Sbjct: 3 LSLNKIFPHAGHDLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + + P++ V LS A R YG+ N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITEVPLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G + + + L TTP+PI + L L G V++E SS Sbjct: 119 VAQALDLLGQHCGIVGTLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + TNL RDH+DYH T +AY AK +LF K + DD Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAEAKAKLFAWNDLKCRVVNL--DDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ + S+ ++++++ + + T+ + L G F Sbjct: 237 FGRQLAAEKRESRLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + + +L+ L KL GR + +G ++ + VDYAHT ++LE Sbjct: 297 LSNVLAAVGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L +R G+++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPR+EDP I + Sbjct: 356 VLTALRPHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDD 415 Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G + R +AI I + DV+V+AGKGHE + NGE+ D Sbjct: 416 IRAGFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474 Query: 489 IREIL 493 L Sbjct: 475 ADHAL 479 >gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 487 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 234/484 (48%), Gaps = 14/484 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKR +M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAIIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I N DV+V+AGKGHE + +G++ D Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475 Query: 490 REIL 493 + L Sbjct: 476 AKAL 479 >gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 481 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 229/477 (48%), Gaps = 15/477 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ ++ +++D+R ++ G +FV I G DGH F A GA AIV Sbjct: 11 QDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCEYELENIA---- 66 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 P ++V +T L A ++ K E + +TGT+GK++ A ++ + Sbjct: 67 ----IPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEGH 122 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG ++ + + TTP P+ L + + +GV V++E SSH L+ HR+D Sbjct: 123 VGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDYC 182 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +H+D+H T YF AK +LFE L P + D+ K V + + Sbjct: 183 QFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNRLKES 242 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + ++ ++ PL G F VYNAL A Sbjct: 243 QTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMASA 302 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + ++ ++ L V GR E + + + VDYAHT + +E +L+ + I Sbjct: 303 YSASMPMEQIIALIKTLSPVDGRMEII-NEGQDFTVIVDYAHTPDGVEKVLEFVTGIKQN 361 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440 + VV GC GDRD+ KRP++ K+++D AD I T D+P SEDP I E++ GI + Sbjct: 362 GVKVVIGCPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNEMVSGIKPMNYE 421 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 +RIEAI TAI K D++++AG+GHE + +G ++ D ++ +E+L L Sbjct: 422 VIVDRIEAIETAINKAQKNDIVLIAGRGHEQIQYWKSGNIRL-DDREVAKEVLRRRL 477 >gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] Length = 485 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 209/498 (41%), Positives = 281/498 (56%), Gaps = 23/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + E + +++DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRELFGDD--------ATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A+ A + R P + N R+ L+L A++ Y + P I AV Sbjct: 53 DAAIASGAVAVAGDHAPA--------RGRVPFIATPNPRRALALAAAKFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG + S A +TTP PI L + L L+ Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGYLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+R+DG+++ A FTNL RDH+DYH T Y K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRVDGVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISV 295 + A+I AD S V++ A V+ VG +G I L + Q+VT+ Sbjct: 225 SDGIAVICADHDCSDTVIEAAGARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D LE L GR E +G G Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGGDVDQAFAALEHLEGARGRIERIG-ERNG 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA D AD+ IV Sbjct: 344 AQVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ PG E G+R EAI TAI L D L++AGKGHET IV Sbjct: 404 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKGHETGQIV 463 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + L Sbjct: 464 GD-RVLPFSDHEAASAAL 480 >gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] Length = 485 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 146/506 (28%), Positives = 240/506 (47%), Gaps = 32/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQD++Y + + R++ + DSR + +F AI G DGH +I Sbjct: 1 MQLQDVLYGITITSL-------VGNTSREVTALVFDSRKVVKDSVFFAIRGTMSDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + GA ++ R + V+N+ L A+ YG + + Sbjct: 54 DDTVEAGASVVICE------VLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++A+ + ++ + G I + I+ + TTP PI L + L + Sbjct: 108 GITGTNGKTTIATLLFKLFRELGYGVGLISTVQNHINDVVVPSTHTTPDPIALNELLQSM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + QHR++G+ G F+N+ DH+D+H T Y AK F ++ Sbjct: 168 VDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKK-AFFDV 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ DD +++ + + + ++ Sbjct: 227 LPANAFALTNLDDRNGMVMLQNTKATKKTYALKQLADFKAKIIENSFSG------LHLDI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D F L G F YN L G + +G + VL L L GRF++V + + Sbjct: 281 DQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQQ-II 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++++ +L I+ I G ++I + GCGGDRD+ KRP+M ++A D +D I+ Sbjct: 340 GIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPVMAQVACDWSDKVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+EDP+ I +E+ G+ + +R EAI+TA + D++V+AGKGHE Sbjct: 400 TSDNPRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496 + NG K D +I+ E L LI Sbjct: 460 KYQDI-NGVKYHFDDKEILTEQLNLI 484 >gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] Length = 509 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 25 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 84 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 85 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 144 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 145 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 204 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 205 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 262 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 263 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 322 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 323 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 381 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 382 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 441 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 442 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 500 Query: 489 IREILGL 495 +++L L Sbjct: 501 AQQLLEL 507 >gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] Length = 491 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 144/496 (29%), Positives = 224/496 (45%), Gaps = 21/496 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ P + +S DSR I+ +FVA+ G + DG FI Sbjct: 1 MRL-DLLLPFK---------VPAYLANLDVQGMSLDSREIKKNGLFVALQGAQLDGRSFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENIL 118 +AI QGA ++ + +S + + + ++V +S A K+ ++ Sbjct: 51 EKAIHQGACVVLSETMHSAEHGDIKMHAQVAEILVFKLPYLISQIAYQFYFPKKNLHKVI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 +TGT+GK+++AS + Q + + Q+G + L TT I + L+ Sbjct: 111 GITGTNGKTTIASLLANALQLLDVKNAQMGTIGNGLFGQLKSSLNTTLDAISIFAELASY 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG + +E SSHGLD R+ + + FTNL RDH+D+H T Y AK RLF E Sbjct: 171 QQQGAQYTLMEVSSHGLDLGRVQALPFYSAIFTNLTRDHLDHHGTMACYGLAKKRLFSEY 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 ++ DD + + + Q ++ +K++ Sbjct: 231 SLQQRIIN--IDDPTGEMWLSE-FSDAISYGKATNQKQYFTVKEIFYQKQGICFNFQSSW 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P G F V N +A G + + KL+ VPGR E + + Sbjct: 288 GDGQISAPFYGHFNVQNLSAVLCQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDIT 347 Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++LE L+ + G +I +FGCGGDRD GKRP M K+A LA I+ Sbjct: 348 FVVDYAHTPDALEKALQALHQHSQKGELICLFGCGGDRDTGKRPEMAKVAEKLASQVILV 407 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DDNPR+E I +I+ G +R EAIR A++ + D+++VAGKGHE Sbjct: 408 DDNPRTEQASVIMQDILAGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKGHEDYQ 467 Query: 474 IVTNGEKKMSVDCDII 489 I+ E+ D +++ Sbjct: 468 IIG-KERIHYSDRELL 482 >gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] Length = 490 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 162/489 (33%), Positives = 238/489 (48%), Gaps = 14/489 (2%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ + + R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + Sbjct: 5 LAPWGLDVPGRALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEG 64 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 D S T P++ + N + LS A + Y + ++ VTGT+GK++ + Q Sbjct: 65 IAADASITAMHGVPVIYLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQ 124 Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 Q G +S +G TT S + + + L L QG T ++E SSHGL Sbjct: 125 WSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 Q+R+ + A FTNL RDH+DYH +Y AK LF + ADD Sbjct: 185 VQNRVAALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFSTHQSEHKIIN--ADDDVGL 242 Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A + G+ G ++ V N + L G F Sbjct: 243 RWLSQLPQAVAVSMENKVPQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAF 302 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N LVA +++ A +L +L V GR E + VDYAHT ++LE Sbjct: 303 NVSNLLVALSTLLSLDYPLADLLAAAPQLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALE 361 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A Sbjct: 362 KALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVA 421 Query: 431 EIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I+ G+ + R EA+ +AI + DV++VAGKGHE +V + D Sbjct: 422 DILGGLMDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKGHEDYQLVGHRRLDY-SDRI 480 Query: 488 IIREILGLI 496 + +LG++ Sbjct: 481 TVARLLGVV 489 >gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 499 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 143/510 (28%), Positives = 230/510 (45%), Gaps = 40/510 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + KI + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K L Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230 Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F + A++ ADD + K G + K + Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNINLSPKG 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 289 IRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + ++ + VDYAHT ++LE +L I + G++I VFGCGGDRD KR IMG IA Sbjct: 349 I-DENQDFLVIVDYAHTLDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 +D +T DNP SEDP+ I +I G + + +R AI AI M + D+++ Sbjct: 408 YSDFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET I+ + D + R+ + Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496 >gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] Length = 494 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 169/497 (34%), Positives = 248/497 (49%), Gaps = 13/497 (2%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L + L+ + ER + E++ DSR AG +FVA+VG+K DG +IPQAIAQG Sbjct: 2 TDRNLRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVA 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A+V + + D + T P++ ++N + LS A R Y + ++ VTGT+GK+ Sbjct: 62 AVVAQADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKT 121 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + Q Q G +S +G + TT S + + + LS L QG + Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAA 181 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + A FTNL RDH+DYH Y AK RLF E + Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAEHQVGQKIIN- 240 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ADD + ++R +A ++ + ++ + + V + Sbjct: 241 -ADDEVGRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEIN 299 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F V N L+A +++G +++ L V GR E + R + VDYA Sbjct: 300 SRLMGAFNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRPT-VVVDYA 358 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSE Sbjct: 359 HTPDALEKALAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418 Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP+ I A+I+ G+ R EA+ +A+ DV++VAGKGHE +V N Sbjct: 419 DPQAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478 Query: 481 KMSVDCDIIREILGLIL 497 D + +LG+I+ Sbjct: 479 DY-SDRITVARLLGVIV 494 >gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] Length = 504 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 163/498 (32%), Positives = 251/498 (50%), Gaps = 18/498 (3%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K + L + L K E+ DSR I+ G IF+AIVG+++DG +I AI++GA Sbjct: 2 KTYRNLSDLLHQSKKLVANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGA 61 Query: 69 EAIVVSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSG 125 AI+ S + +D + PI+ V N RK + F+ +LYG ++ VTGT+G Sbjct: 62 SAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++V+ V Q+ + G S +G I + LTT S + L + V Sbjct: 122 KTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVK 181 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSHGLDQ R + + FTN+ RDH+DYH + Y +K +LF E K Sbjct: 182 IVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNRV 241 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGK 298 + DD + +K N+ ++ ++ K+ ++N+ + + + Sbjct: 242 --FFIDDPVGSKWIKDFPNSCAVSINHKNKLNLLNRPILYATKIEYLYNQTIIRFNSDWG 299 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + GEF V N ++A + IG L++++ +++ V GR + V + R+ Sbjct: 300 NGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIGRMQLV--SHYNPRV 357 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAH S+SL+ L +IR G+I VFGCGG RD+GKR IMG+IA +D I+TDD Sbjct: 358 IIDYAHNSDSLKQCLISIRKHFGGKIWCVFGCGGSRDKGKRAIMGRIAEKYSDFVIITDD 417 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR EDP+KI EI+ G R AIR +I D +++AGKGHE IV Sbjct: 418 NPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPNDTVLIAGKGHEEKQIV 477 Query: 476 TNGEKKMSVDCDIIREIL 493 + K + D I+ L Sbjct: 478 GD-RKILCSDYQIVVSYL 494 >gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 489 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 159/495 (32%), Positives = 239/495 (48%), Gaps = 19/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M + + + +L+ L +Q E +I + DSR I G IFVA+ G DGH F Sbjct: 1 MANRRIKRRIMEKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I AI +GA+ I+VS Q +++ N RK L + AS YG +NI Sbjct: 61 IDTAIEKGAKLIIVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKI 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 + T + + G I + TTP + L + + Sbjct: 114 LGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAY 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G+ ++ +E SSH L+ R++ ++ FTNL DH+DYH+T + YF AK +LF + L Sbjct: 174 EEGLEYIIMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-L 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ I+ DD Y K + + H G QGK + K++V +S+ GK Sbjct: 233 RGKAIKILNVDDEYGKRLQEEFHGISYGTKQAGVQGKI-----LGFEGGKERVELSLFGK 287 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + G F +YN L + L +G+ + +E L PGRFE V + Sbjct: 288 KKECKIQILGGFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMV 346 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT ++LE IL+ I+ I + +II +FGCGGDRD KRPIM +IA +D ++T D Sbjct: 347 VIDYAHTGDALENILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSD 406 Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 NPR+E+PE I E+ G I R EAI I K D++++AGKGHET I+ Sbjct: 407 NPRTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILG 466 Query: 477 NGEKKMSVDCDIIRE 491 +K D + R Sbjct: 467 R-KKYHFDDREFARR 480 >gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae 642] Length = 487 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 14/486 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAAIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GAEKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G + R +AI I N DV+V+AGKGHE + NG+++ D Sbjct: 417 RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475 Query: 490 REILGL 495 L + Sbjct: 476 ASALDV 481 >gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 495 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 157/493 (31%), Positives = 237/493 (48%), Gaps = 10/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + R++ E++ DSR AG +FVAI G++ DG +IPQAIAQG A+ Sbjct: 4 RNLRDLLAPLGIDAPVRELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + + + + I P++ V++ LS A Y + + + VTGT+GK++ Sbjct: 64 IAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q G +S +G + TT S + + L L Q T ++E Sbjct: 124 TQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH + Y AK LF K+ Sbjct: 184 VSSHGLVQGRVAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQIINADD 243 Query: 249 DD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + + L +QG+++ +++ +T L Sbjct: 244 EIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWGGGTIDSSL 303 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L+A +A+ +LE L V GR E T + + VDYAHT Sbjct: 304 MGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKPV-VVVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L R G++ VFGCGGDRD+GKRP+MG +A LAD IVTDDNPR+E+P+ Sbjct: 363 DALEKALMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADYVIVTDDNPRNEEPQ 422 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A+I+ G I R+EA+ AI DV+++AGKGHE +V + Sbjct: 423 AIIADILTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKGHEDYQLVGHRRLDY- 481 Query: 484 VDCDIIREILGLI 496 D + +LG+I Sbjct: 482 SDRLTVARLLGVI 494 >gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] Length = 495 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 11 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 71 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 428 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486 Query: 489 IREILGL 495 +++L L Sbjct: 487 AQQLLEL 493 >gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 483 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 131/485 (27%), Positives = 231/485 (47%), Gaps = 16/485 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + ++ ++I + DSR + G +F AI G DGH +I A+ GA A+V Sbjct: 6 MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 65 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 ++ V NT+K L++ +S+ YG+ +N+ + V GT+GK+++ Sbjct: 66 E---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 116 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +Q + + G+ S IG + + TTP L + L + +V +E SSH Sbjct: 117 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEVSSH 176 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G+ ++R+D + FTN+ +H+DYH+T + Y KMR F + + + + Sbjct: 177 GIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAIINCDD 236 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311 + + I K + + ++ V+G+ PL G++ Sbjct: 237 EHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN L ++G ++ +E + V+ GRFE G + +DYAH +++ Sbjct: 297 VYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFE-YIQAPSGVTVVIDYAHNPDAIFQ 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L + I++G II V G GG+RD+ KR IMG+ A L+D T DNPR+EDP I + Sbjct: 356 VLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNEDPLSIIYD 415 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G + +R +AI A++ D +V+ GKGHE + NG+ D ++ Sbjct: 416 LLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKTQNI-NGKIVPFNDKIVV 474 Query: 490 REILG 494 E++ Sbjct: 475 EEVIR 479 >gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] Length = 499 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 10/501 (1%) Query: 1 MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+ + ELI L + + I + DSR I++G FVAI G+ DG F Sbjct: 1 MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I +AIAQGA ++ + + R+ P++ + + LS A RLYG H ++ Sbjct: 61 IDKAIAQGANLVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+++ + Q + G + +G T + TT + + + L L+ Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240 Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDA + +K+ G +++ + I ++V + + Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL GEF N L+A +++G + + +L KL V GR E + Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TD Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE + Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + N D + +++L L Sbjct: 478 LANETIHY-SDRETAQQLLEL 497 >gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] Length = 493 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 154/487 (31%), Positives = 239/487 (49%), Gaps = 8/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + + ++++ DSR + G FVA+ G+ DG FI AI +GA A+V Sbjct: 11 LAPWVDLAANPFGRLPVSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + S +++ P++ +++ LS A RLY ++ VTGT+GK+++ + Sbjct: 71 QESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTITQII 130 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + +G Q TT S I + + L+ L Q + ++E SSH Sbjct: 131 AQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + FTNL RDH+DYH T + Y AK+ LF E K + A+I DD Sbjct: 191 GLVQGRVKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE--HKTAHAVINVDDPV 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N+ L I+ +V + ++ S D PL GEF Sbjct: 249 GARWASTLANSVQVSLKTLDADNAIYASQVDYSESGISLSFSGMYGDGKLDVPLIGEFNA 308 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N LVA + +GID ++E +L V GR E ++ VDYAHT ++LE Sbjct: 309 NNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELF-QTPSKAKVVVDYAHTPDALEKA 367 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L +R G++ V+FGCGGDRD GKRP+M +I LAD I+ DDNPRSEDP +I ++ Sbjct: 368 LLALRVHCKGKLWVIFGCGGDRDVGKRPMMAEIGERLADKVIIADDNPRSEDPARIVEDM 427 Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G+ + +R A++ A+ QD++++AGKGHE ++ N D + Sbjct: 428 LAGMSQPDLASVEHDRFNALQFALSQSQAQDIILLAGKGHEDYQVLANETIHY-SDRESA 486 Query: 490 REILGLI 496 +++L LI Sbjct: 487 QQLLELI 493 >gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] Length = 495 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 243/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR +G +FVA+ G++ DG +IP Sbjct: 5 NLRDLLAPWVT-----------GLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK LF Sbjct: 174 AQGATFGAMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS--T 231 Query: 239 PKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + ++ G+++ V + + + Sbjct: 232 HHYGQAIVNADDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFT 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ D +LG+I Sbjct: 471 YQIIGTQRLDY-SDRVTAARLLGVI 494 >gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] Length = 492 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 147/492 (29%), Positives = 228/492 (46%), Gaps = 20/492 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L + L + + ++ + DSR + G +FVAI G++ DG FI +AI +GA A+ Sbjct: 2 RDLKSILKYIEIDAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGAVAV 61 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + ++ +V K L+ ASR Y K N+ + VTGT+GKS+ Sbjct: 62 IADRLCEFDVAFESLY------LVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKSTT 115 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + Q S IG TTPS + L LS L V++E Sbjct: 116 TAMIAHLAQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL QHR+ + A FTNL RDH+DYH +Y +AK+ LF + ++ Sbjct: 176 VSSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRD--FDPQLVVLNQ 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + +++ ++++ V +S D Sbjct: 234 DDNQAGQWLEKYDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVKS 293 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GEF +YN A + +G ++ ++L V GR + + VDYAH Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTC-VVDYAH 352 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +L + L+ ++ G + VFGCGGDRD+GKR +M + A A+ I+T DNPRSED Sbjct: 353 TPEALALALQALQKHVPGGVSCVFGCGGDRDKGKRVLMAQAAEKNANKVIITSDNPRSED 412 Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I AE+ G+ + +R AI AI +V+++AGKGHE I+ + E+ Sbjct: 413 PNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKGHEDYQIIGD-ERI 471 Query: 482 MSVDCDIIREIL 493 D ++E L Sbjct: 472 DFCDRQFVQEQL 483 >gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] Length = 491 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR + G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 Q V +E SSH L R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ +DD ++E M+ + K + T Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ ++ + L VPGRFE V Sbjct: 283 LVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A Sbjct: 342 GQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPRSEDP+ I +++ G + +R EAI + +D++++AGKGHE Sbjct: 402 AILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ E D +I +E + Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAI 483 >gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] Length = 486 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 145/500 (29%), Positives = 232/500 (46%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + IN + +++ ++ DSR + G +FV I G DGH +I Sbjct: 1 MKLRELVMNLNIKAING-------NLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI G +A +V + + +D+TR L+ + +G + Sbjct: 54 NDAIENGTKAFLVQKHV-------VVPEGITTIEIDDTRFGLAAVSDAFFGHPSSKFNLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + +G + +G + I S TTP L S + Sbjct: 107 GITGTKGKTTTTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V +E SS GL+ HR+ G FTN RDHI + A +L Sbjct: 167 VEKKVDSTVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKE--HATLEEYFNAKAKL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I D + +++ + A + + T++ Sbjct: 225 FKMCRKAVINIDSEHGRKMAELAKCKVFTYGLSDKADIW--ASDIVKKTGHTYFTLNSPW 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L GEF +YNAL A G C I + + VPGR E V T Sbjct: 283 GSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVTVPGRMESVKTGG-NYS 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT +SLE +LK ++ GR++ +FGCGGDRD+GKRP MG+I+ ++AD I+T Sbjct: 342 VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITS 401 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+PE+I +I GI +I+ +R +AI+ A+E D++++AGKGHET Sbjct: 402 DNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKGHETYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + + +++ E+L Sbjct: 462 QFAE-KTIHFDEREVVNELL 480 >gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] Length = 494 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 242/501 (48%), Gaps = 34/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ E++ + +++ ++ SR I +F AI G DGH FI Sbjct: 1 MLLKELLQGV--EVLQTIGDTS-----QEVGNITQSSRDITPNTLFFAIKGAHTDGHRFI 53 Query: 61 PQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 P+ IAQ G +V +D + + V +T + + A+ YG E + Sbjct: 54 PEVIAQQGKVLVV-------EDLPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++AS Q+ ++ G I + ++ TTP + L K L Sbjct: 107 VGVTGTNGKTTIASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + QGVTH +E SSHG+ HR++G+ G FTNL +DH+D+H+T Y + K + F+ Sbjct: 167 MVGQGVTHCFMEVSSHGIALHRIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDH 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ +D +++ L + +++ Sbjct: 227 -LPKTAFALTNIEDKNGAYMLQNTSAHKSTYALGRAADFKGQLLESTFAG------MTLR 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + L G F YN L + +G + VL + L V GRF+ + G Sbjct: 280 VGNHEVWTSLIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQ-YFVSPSGV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++L+ +++ I I R+I V GCGG+RD+GKRPIM IA L++ I Sbjct: 339 TVIVDYAHTPDALQNVIETILDIKDPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDPE+I E+ GI + +R +AI+ A + K D++++AGKGH Sbjct: 399 LTSDNPREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIR 490 ET V G + D + R Sbjct: 459 ETYQEVK-GVRTHFDDLEEAR 478 >gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] Length = 491 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++ G + +R EAI AI + D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] Length = 491 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 144/507 (28%), Positives = 235/507 (46%), Gaps = 30/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR + G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + ++ + G + IG + I + + TTP + L + + Sbjct: 105 GITGTNGKTTTSHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + V +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 IEENVNSAVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DD ++E M+ + K + T Sbjct: 225 GNSYHHDREKYAVLNNDDPVAEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ ++KL VPGRFE V Sbjct: 283 LVTPNESINITMKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQDYTVIVDYAHTPDSLENVLITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPRSEDP+ I +++ G + +R EAI AI +D++++AGKGHE Sbjct: 402 AILTSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 T I+ E D +I +E + L Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAISERL 487 >gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] Length = 485 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 131/485 (27%), Positives = 231/485 (47%), Gaps = 16/485 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + ++ ++I + DSR + G +F AI G DGH +I A+ GA A+V Sbjct: 8 MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 ++ V NT+K L++ +S+ YG+ +N+ + V GT+GK+++ Sbjct: 68 E---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +Q + + G+ S IG + + TTP L + L + +V +E SSH Sbjct: 119 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEVSSH 178 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G+ ++R+D + FTN+ +H+DYH+T + Y KMR F + + + + Sbjct: 179 GIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAIINCDD 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311 + + I K + + ++ V+G+ PL G++ Sbjct: 239 EHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYN 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN L ++G ++ +E + V+ GRFE G + +DYAH +++ Sbjct: 299 VYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFE-YIQAPSGVTVVIDYAHNPDAIFQ 357 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L + I++G II V G GG+RD+ KR IMG+ A L+D T DNPR+EDP I + Sbjct: 358 VLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNEDPLSIIYD 417 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ G + +R +AI A++ D +V+ GKGHE + NG+ D ++ Sbjct: 418 LLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKTQNI-NGKIVPFNDKIVV 476 Query: 490 REILG 494 E++ Sbjct: 477 EEVIR 481 >gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] Length = 480 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 205/486 (42%), Positives = 286/486 (58%), Gaps = 20/486 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ + + Q E + V+ DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRDLLRGE--------AAIDPQAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ + ++ P++V D+ R+ L+L A+ +Y + P I AV Sbjct: 53 EAAVK---------AGAVAVVTGHPHTASVPVVVADDPRRALALAAAVVYPRQPRTIAAV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +Q+ G ++ +G +S LTTP P+ L +A+ L+ Sbjct: 104 TGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAG 163 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y K+RLF +L P Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAP 223 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +PA+I AD +S V+ A V++VG QG+ I L + Q++T+ G++ Sbjct: 224 EGAPAVIAADHEHSATVIAAARTHKLNVMTVGRQGEGIRLVEAAIDGFGQRMTVEHRGQN 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL GEFQ+ NALVAAGL I+ G D+A LE L GR E VG G ++ Sbjct: 284 WRLRLPLVGEFQIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVGDRF-GAPVF 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L L+ +R GR++VVFG GGDRD GKRP+MG+IA AD IVTDDN Sbjct: 343 VDYAHKPDALVKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGEIAARHADTVIVTDDN 402 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSEDP IRA I+ PG G+R EAIRTA+ L DVL++AGKGHE IV + + Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKGHEIGQIVGD-K 461 Query: 480 KKMSVD 485 D Sbjct: 462 VLPFSD 467 >gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 488 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 243/487 (49%), Gaps = 13/487 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L L + E I+ V DSR ++ G +F+A+ G DG FI QA+A GA AIV Sbjct: 6 LAGVLDMPSCPSAETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVA 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVAS 131 + P++ + ++ ASR + + +++ VTGT+GK++ + Sbjct: 66 EPPVAG----FVEALQVPLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSR 121 Query: 132 FVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 V Q+ + G S IG + TTP + L + L+ QGV S+E S Sbjct: 122 LVAQLIRLQGKSCGVIGTLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVS 181 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH + Q R++G+ FTNL DH+DYH + +AY AK+ LF K A++ DD Sbjct: 182 SHAMVQGRVNGVGFETAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKH--ALVNLDD 239 Query: 251 AYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + V SV + +++ + + +F+ PLPG+ Sbjct: 240 EFGARVCDVVEPGVQLITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGD 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F + N A G A VL+++ +L VPGR + + +N+ G ++ +DYAHT ++L Sbjct: 300 FNLANLAAAVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSL-SNTLGLQVIIDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L +R G+++VVFGCGGDRD+ KR +MG++A +AD +VT DNPR EDP I Sbjct: 359 EQVLTALRLHVDGQLVVVFGCGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAIL 418 Query: 430 AEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 A+I G G ++ + +R AI+ A+ D +V+AGKGHE +V +GE D + Sbjct: 419 ADIEVGCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKGHEDYQVV-DGEYLHFSDEEQ 477 Query: 489 IREILGL 495 L + Sbjct: 478 ALAALAV 484 >gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] Length = 512 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI AIAQGA ++ Sbjct: 28 IAPWLELTDPKLATLVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H + VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] Length = 491 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 146/502 (29%), Positives = 231/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYHQT + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNGEKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 157/502 (31%), Positives = 244/502 (48%), Gaps = 20/502 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ + Q ++ ++ + ++S G +F+ I G + DG F Sbjct: 1 MNLRELLA--------VIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFW 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P A+A GA A ++S + + S+ ++ + K + + YG E I+ Sbjct: 53 PSALAAGAVAAIISPQAASKTPPT---SDALVITATSLNKVCAQVCAAFYGYPAEKLQIV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++ L + +G T + F+Q TTP I L L+ Sbjct: 110 GVTGTNGKTTTTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQA 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH L Q R+ G FTNL +DH+DYHQ + YF AK LF Sbjct: 170 VDAGCQLGIMEVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPD 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A+I DD Y + + S+ + + + + Sbjct: 230 -YLQGRAVINIDDHYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPE 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356 + F PL G++ + N L A + +G+D V++++ VPGR E + N + Sbjct: 289 GNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDI 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MG+IA DLAD+ +VT Sbjct: 349 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDKTKRPKMGRIAADLADVVVVT 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P+ I +I+ G+P + G+R AI TAI D +++AGKGHE Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQ 468 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ EK D + R+ L L Sbjct: 469 ILGT-EKIHFDDREQARDALHL 489 >gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] Length = 491 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++ A++ +DD ++E M+ I K + T Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + D L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I ++I + +R EAIR AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ E D ++ +E + Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483 >gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Vibrio cholerae LMA3894-4] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 11 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 71 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 428 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486 Query: 489 IREILGL 495 +++L L Sbjct: 487 AQQLLEL 493 >gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] Length = 494 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 151/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%) Query: 1 MKLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L + + +Q+ + I DSR + G I++ I G DGH F Sbjct: 1 MRLPEK-NNTLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDF 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 V + + + + P + V N R+ A+ ++G + + Sbjct: 60 ---------AEAAVKAGAAALAVERYLPLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLEL 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V ++ I Q +G + IG I + + TTP + L+ Sbjct: 111 IGVTGTNGKTTVTHLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQ 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV +E SSH LD R+ G + FTNL +DH+DYHQ+ + Y AK LF + Sbjct: 171 MVEEGVNTAVMEVSSHALDLGRIVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQ 230 Query: 237 LL--PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AI+ ADD S+ +M + +K+ + Sbjct: 231 MSGEKPGQKAILNADDQASEYLMTKTSCRVVTYGIEKKADY--QAEKIVLSDKGIYFDLV 288 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + F PG+F VYN L A + G +S V + L L VPGRF+ + Sbjct: 289 YKKIREKVFFATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKGQ- 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT + LE +L R IT R+I VFGCGGDRD+GKRP+M + A +D I Sbjct: 348 PFLVIIDYAHTPDGLENVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYVI 407 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDPEKI +I+ G+ + +R AI A M + D +++AGKGHE Sbjct: 408 VTSDNPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKGHEDY 467 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ K D + L Sbjct: 468 QIIGTS-KIHFDDKEEASAALR 488 >gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 11 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 71 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 428 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486 Query: 489 IREILGL 495 +++L L Sbjct: 487 AQQLLEL 493 >gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] Length = 514 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 162/519 (31%), Positives = 239/519 (46%), Gaps = 34/519 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ L + ++E+ DSR + G +F+A+VG++ DG +I Sbjct: 5 NLRDLLAPYL------LDPYKQDVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYIS 58 Query: 62 QAIAQGAEAIVVS-------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 QAIAQGA A++ + T PI+ +++ + LS A + Sbjct: 59 QAIAQGATAVIAEAQGQSAPSIPTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQ 118 Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTT 164 Y + ++ VTGT+GK+++ + Q Q G S +G TT Sbjct: 119 FYHQPGARLKLVGVTGTNGKTTLTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTT 178 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 179 GSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDMA 238 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---- 280 Y AK +LF KE ADD + + + +A + + Sbjct: 239 RYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETK 296 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + + + L G F V N L+A +A+ ++ + +L Sbjct: 297 NINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQ 356 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+GKR Sbjct: 357 AVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRA 415 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLN 457 +MG IA AD +VTDDNPR+EDP I A+I+ G I + NR EAI + + Sbjct: 416 LMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAK 475 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +QDV+VVAGKGHE +V N D I+ ++LG I Sbjct: 476 EQDVVVVAGKGHEDYQLVGNRRLT-FSDRHIVAQLLGAI 513 >gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] Length = 496 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 157/504 (31%), Positives = 245/504 (48%), Gaps = 16/504 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ I Q+ P E+++ +S++S Q G +F+ + G + DG F Sbjct: 1 MKLRELL--TLIPTITQIPEHP--ALEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 AI + + + ++ V++ + A+ YG ++ Sbjct: 57 SSAIE---AGAIAAIISPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ + + +G + + Q TTP L + L+ Sbjct: 114 GVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQA 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH L Q R+ FTNL +DH+D+HQ + YF AK +LF Sbjct: 174 LKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAE 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DD Y K ++ SV + + +C N + Sbjct: 234 -YLKGKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPI 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356 + F PL G++ + N L A G +++G+D ++++L VPGR E V ++ + Sbjct: 293 GEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDI 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +LAD+A+VT Sbjct: 353 SVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVVT 412 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I +I+ GIP + +R AI AI D +++AGKGHE Sbjct: 413 SDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQ 472 Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + RE L + L Sbjct: 473 ILGT-EKIHFDDREQAREALTVRL 495 >gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 499 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 148/505 (29%), Positives = 237/505 (46%), Gaps = 24/505 (4%) Query: 1 MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M L+ L + L++Q + + + + DSR G IFVA+ G DG Sbjct: 1 MNLKPLNNYIVALTEEHLLSQAYTGEVSTEQCPVTSIEQDSRRASEGCIFVALRGVHVDG 60 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +IP+A+A G IV ++ L V +T K +++ AS Y + Sbjct: 61 ADYIPKALAAGCRIIVTEHP-----RPESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 I+ VTGT+GK++ A+ Q+ G+ + I TTP + L + Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + + G ++ +E SSH L Q R+ G+ FTNL RDH+DYH T QAY AK L Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ L ++ A++ ADD +++ + L T+ Sbjct: 236 FDH-LSPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMAQL----LGQYVDGSTL 290 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ ++ + A+ + +D +L+L + L V GRF+ + + Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++LE +LK + + + ++ VV G GGDRD GKRP MG+IA ++ D Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHL 409 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T DNPRSEDP+ I +++ GIP +R +AI A + D++V+AGKG Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET + G + D +++REI Sbjct: 470 HETYQEIE-GVRHHFDDKEVVREIF 493 >gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] Length = 512 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHINGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHEAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103] gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103] Length = 499 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 163/503 (32%), Positives = 241/503 (47%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + +++ DSR AG +FVAI G++ DG FIP Sbjct: 9 NLRDLLGPWVPD-----------APARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIP 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119 QAIAQG A++ + D P++ + + LS A R Y + + ++ Sbjct: 58 QAIAQGVAAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIG 117 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q G +S +G TT S + + L L Sbjct: 118 VTGTNGKTTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELV 177 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A FTNL RDH+DYH Q Y +AK LF E Sbjct: 178 RKGASLTAMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE-- 235 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + + +A + G G+++ V N + Sbjct: 236 HQVGVAIINADDEVGRRWLANLPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFD 295 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L +L V GR E + + Sbjct: 296 SSWGEGEMNSRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNGRMEVF-SATG 354 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ +FGCGGDRD+GKRP+MG IA ADI + Sbjct: 355 KPTVVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADIVV 414 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSEDP+ I +I+ G+ R +A+ + I D+++VAGKGHE Sbjct: 415 VTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKGHED 474 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ N D + +LG Sbjct: 475 YQIIGNQRLDY-SDRATVATLLG 496 >gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] Length = 488 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 158/502 (31%), Positives = 260/502 (51%), Gaps = 31/502 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+YK EL+ + + + +V DSR I+ G +F+A+ G DGH FI Sbjct: 3 NLKDLLYKVSLELV-------IGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIE 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 +A+A GA A++ L+D + + VDN K L+L + Y + ++ Sbjct: 56 KAVASGAVAVL------LEDLPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKLVG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ S + Q+ ++ G + I I + TTP P+ + L+ + Sbjct: 110 VTGTNGKTTTTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAAMR 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GV + +E SSHG+DQ R+ G+ + G FTNL DH+DYH T Y + K R F+ L Sbjct: 170 DAGVDYCFMEVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFDM-L 228 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P ++ A+ DD + +++ Y + + + ++ Sbjct: 229 PSDAFALTNRDDKNGEFMLQNTKARKLGYALKTYTDYRAQIIENQFGG------LQLKVN 282 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + + GEF YN L G I +G++S VLE + +L V GRF++ T ++ Sbjct: 283 NQELWTKMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQHITA 342 Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L+ +L+ I I + ++I V GCGGDRD+ KRP+M IA L+D+ I T Sbjct: 343 IVDYAHTPDALKNVLETINAIRTRNEKLITVVGCGGDRDKSKRPVMANIAASLSDLIIFT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+E+P+ I ++ G+ + +R AI+TA++M + D++++AGKGHET Sbjct: 403 SDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + NG + D I+ ++L Sbjct: 463 YQEI-NGVRSDFNDRLIVADLL 483 >gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 491 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] Length = 483 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 162/499 (32%), Positives = 235/499 (47%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + + I + +DSR IQ G +FVA G+ DG LFI Sbjct: 1 MKLTQLLKSWLNQ----------EVVDCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 +A++ GA A+V A D + ++ P + V + L+ A Y I Sbjct: 51 AKAVSAGAVAVVYEPANFPIDG--VLPTSIPCIAVPDLATKLAYIAKAFYDDPENSLTIT 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++A + Q G + IG + + Q TTP + L K L Sbjct: 109 GITGTNGKTTIAYQLAQAHHLLGQGAAYIGTIGQGNVNELQPLDNTTPDSLRLQKLLHQY 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG+ V +E SSH L QHR+D + FTNL DH+DYH + Y AK LF Sbjct: 169 KEQGLKQVCMEVSSHALAQHRVDALTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGE 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DD Y + + ++ + + N ++ + Sbjct: 229 SLQW--AIINQDDEYQQVMAAALKPHVKKLTYGLREDCDVKAVNWRMDINGTEIDVHSPW 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 G F +YN+L +A G V+ + +L PGR E V + Sbjct: 287 GQHHLRIKALGAFNIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVASAPY--- 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L + I GR+ VVFGCGGDRD+ KRP+MGKIA AD I+T Sbjct: 344 VLVDYAHTPDALENALVTLGQIKKGRLWVVFGCGGDRDKSKRPMMGKIASLNADKIIITS 403 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I EIIHGI NR EAI A+E N D++++AGKGHE Sbjct: 404 DNPRTEDPQTIIEEIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKGHEAYQQ 463 Query: 475 VTNGEKKMSVDCDIIREIL 493 + K D ++++ ++ Sbjct: 464 IGR-VKHAFSDQEVVQRLM 481 >gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] Length = 499 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 10/501 (1%) Query: 1 MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+ + ELI L + + I + DSR I++G FVAI G+ DG F Sbjct: 1 MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I +AIAQGA ++ + + R+ P++ + + LS A RLYG H ++ Sbjct: 61 IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+++ + Q + G + +G T + TT + + + L L+ Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240 Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDA + +K+ G +++ + I ++V + + Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL GEF N L+A +++G + + +L KL V GR E + Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TD Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE + Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + N D + +++L L Sbjct: 478 LANETIHY-SDRETAQQLLEL 497 >gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 484 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 159/475 (33%), Positives = 248/475 (52%), Gaps = 15/475 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ DSR + G IFVA+ G +EDG FIP A GA IV ++ +A Sbjct: 16 EIEVRA---DSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVC--RADSEEAAAAA 70 Query: 87 RSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ + R+ L A P I+ VTGT+GK++ ++++ ++G Sbjct: 71 TAGCRVVHHADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKL 130 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S + LTTP + + L+ ++ GV +E SSH +DQ R+ G+ Sbjct: 131 GVMGTVSYRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCGVP 190 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNL +DH+DYH+ ++YF AK RLF EL + + ADDA+ + +++ A Sbjct: 191 FSGAAFTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTA 250 Query: 264 GCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 L G + ++ + + +S+E ++ PL G F N L + Sbjct: 251 LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVA 310 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + +GID LE V GR E V N +G ++VDYAHT ++LE +LK +R Sbjct: 311 LEMGIDPEAFK-ALESFTGVSGRLERV-ENPQGLNVFVDYAHTPDALENVLKALRDAGFE 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 R+I VFGCGG+RD+ KRPIMG+ +D+A++T DNPR EDPE I +++ G+ Sbjct: 369 RVITVFGCGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLADAKEV 428 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R EA A+ ML K+D L++AGKGHE I+ G K D +++REIL Sbjct: 429 VVEVDRREATTRALGMLGKKDALLIAGKGHEDYQIIQ-GVKHHYSDQEVVREILR 482 >gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 145/500 (29%), Positives = 226/500 (45%), Gaps = 24/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ ++ + +E +I+ + ++S+ I G +F+A G K DG +I Sbjct: 1 MKLKKVLKDIPV-------VQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P+AI GA AIV ++ N + F++ Y + I+ Sbjct: 54 PEAINHGATAIVTD-------IYDPSFKEITQIICKNVAEVEGRFSANFYQMPSQELFIV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + V+ + ++ L IG I + TTP L + Sbjct: 107 GITGTNGKTTTSFLVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG +E +SH LDQ R++ I +TNL +DH+DYHQ + Y AK +LF +L Sbjct: 167 VHQGCQAAVMEVTSHALDQKRVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQL 226 Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 S + + + + Sbjct: 227 DQVPSKKSKQIIANLDCPWFETILKGIKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHY 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G+ + FPL G F +YN L A + + I ++ ++ PGR E + N Sbjct: 287 QGRSYSTFFPLIGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPI-QNDLD 345 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VD+AHT ++L L+ + + G+II VFGCGGDRD+ KRP M + + +D+ IV Sbjct: 346 LNLFVDFAHTEDALYKALECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIV 405 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP KI EI G +I + +R AI AIE N D+++VAGKGHET Sbjct: 406 TSDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKGHETT 465 Query: 473 HIVTNGEKKMSVDCDIIREI 492 I + + D I +EI Sbjct: 466 QIFAHHTIE-FDDRKIAQEI 484 >gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 499 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 148/505 (29%), Positives = 238/505 (47%), Gaps = 24/505 (4%) Query: 1 MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M L+ L + L++Q + + ++ + DSR + G IFVA+ G DG Sbjct: 1 MNLKPLNNYIVALTEEHLLSQAYTGDVSIAQCQVTSIEQDSRRVSEGCIFVALRGVHVDG 60 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +IP+A+A G IV + L V +T K +++ AS Y + Sbjct: 61 ADYIPKALAAGCRIIVTE-----LPRPESASDEVVWLTVTDTAKAIAVLASVYYDRPERQ 115 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 I+ VTGT+GK++ A+ Q+ G+ + I TTP + L + Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWSWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + + G ++ +E SSH L Q R+ G+ FTNL RDH+DYH T QAY AK L Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ L ++ A++ ADD +++ + L T+ Sbjct: 236 FDH-LTPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMAQL----LGQYVDGSTL 290 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ ++ + A+ + +D +L+L + L V GRF+ + + Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++LE +LK + + + ++ VV G GGDRD GKRP MG+IA ++ D Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHL 409 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T DNPRSEDP+ I +++ GIP +R +AI A + D++V+AGKG Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET + G + D +++REI Sbjct: 470 HETYQEIE-GVRHHFDDKEVVREIF 493 >gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] Length = 491 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR + G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 Q V +E SSH L R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ +DD ++E M+ + K + T Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ ++ + L VPGRFE V Sbjct: 283 LVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A Sbjct: 342 GQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPRSEDP+ I +++ G + +R EAI + +D++++AGKGHE Sbjct: 402 AILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ E D +I +E + Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAI 483 >gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] Length = 495 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 157/503 (31%), Positives = 233/503 (46%), Gaps = 21/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ ++ E + E++ DSR AG +FVA+ G++ DG +IP Sbjct: 5 NLRDLLALWGIDI-----------PELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG A++ + + P++ +D+ LS A Y ++ Sbjct: 54 QAIAQGVAAVIAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G + TT S + + L L Sbjct: 114 VTGTNGKTTTTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +Q T ++E SSHGL Q R+ + A FTNL RDH+DYH Y NAK LF Sbjct: 174 NQKATFAAMEVSSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHD 233 Query: 239 PKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 K+ + + + L +QG+++ +V + + Sbjct: 234 VKQKIINADDAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSC 293 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 PL G F V N L+A +++ +L L V GR E R Sbjct: 294 WGSGTLNSPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRP- 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE L R G++ VFGCGGDRD+GKRP+MG +A AD IVT Sbjct: 353 TVVVDYAHTPDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAELGADRVIVT 412 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DDNPRSE+P I A+I+ G + R+EA+ +A+ + DV++VAGKGHE Sbjct: 413 DDNPRSEEPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKGHEDYQ 472 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 473 LVGNRRLDY-SDRLTVARLLGVI 494 >gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia rickettsii] gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] Length = 479 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 160/487 (32%), Positives = 255/487 (52%), Gaps = 23/487 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V + + L Y K P++++AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG ++ LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IEFVKDYLHNHNVKFITVGTKGDLE-ITRLNCSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A IG V++ L ++ V GR E + I+VDYAHT ++LE Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348 Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRA Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREILGL 495 +R+ + + Sbjct: 468 VRKCIKV 474 >gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia sp. Ejp617] Length = 495 Score = 314 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 162/505 (32%), Positives = 242/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR + +FVAI G+ DG FIP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + +D P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A +FTNL RDH+DYH Y AK LF E Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + +++ +A + G G+++ KV +V S Sbjct: 234 VGQ--AIINADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + D L G F V N LVA +++ + +L V GR E + Sbjct: 292 SSWGEGDIDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP I +I+ G+ R +A+ + + D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ + D D + +LG++ Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494 >gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] Length = 491 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++ A++ +DD ++E M+ I K + T Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + D L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I ++I + +R EAIR AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ E D ++ +E + Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483 >gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] Length = 487 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 157/505 (31%), Positives = 242/505 (47%), Gaps = 31/505 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ K P + IN V+ DSR ++ G +FVA+ G + DGH FI Sbjct: 2 MKLSDLLQKISP-------LETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI +GA AI+VS A ++ + V +T + A+ YG + ++ Sbjct: 55 AGAIEKGASAILVSEPI-----PAETPTDVTFVRVADTEDAIGKVATTFYGDPTQRLKLV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G + I + A TTP P+ L K L + Sbjct: 110 GVTGTNGKTTIATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G + +E SSH + Q R+ G+ FTNL RDH+DYH+T + Y +AK F + Sbjct: 170 ADEGCEYAFMECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K++ AI ADD +++ + + + ++ Sbjct: 229 LSKQAFAITNADDKNGPIMVQNTKARIKTYSTRAAADYKGKILEESLEGMLLEINGREVS 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F + N L G I +G+ L L LH V GRFE + +G Sbjct: 289 VRFVGRFNVS------NLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFE-AIRSPKGVS 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++L +L +I I G+ +I V G GG+RD+GKRP+M + A + +D I+ Sbjct: 342 AIIDYAHTPDALANVLSSIDEIVHGKAQVITVCGAGGNRDKGKRPLMAQEAANRSDRVII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G+ I +R EAIR A M DV+++AGKGHE Sbjct: 402 TSDNPRFEEPQAIVDDMLAGLDETQRAKTIAIVDRREAIRAAAAMAQAGDVILIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 + G K D + +R+ GL Sbjct: 462 PYQEIK-GVKHHFDDHEEVRKAFGL 485 >gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7424] gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424] Length = 496 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 158/503 (31%), Positives = 245/503 (48%), Gaps = 17/503 (3%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL++L+ K + L I ++++ +S++S Q G +F+ + G + DG F Sbjct: 3 KLRELLTK-----VPSLVIPEHPALDKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWT 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AI + + + ++ + + ++ YG + ++ Sbjct: 58 SAIE---AGAIAAIITPQAGSKYPPTEDVCVIQAADMVSICAEISAAFYGYPAQQMKMIG 114 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ +S ++ +G T + Q TTP L + L+ Sbjct: 115 VTGTNGKTTTTHLIEYFLTQSQFNTALLGTLYTRWQGYQQTALHTTPFATELQEQLAQAV 174 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + +E SSH L Q R+ G FTNL +DH+D+H+ + YFNAK LF Sbjct: 175 KAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPD- 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AII DD Y + ++ SV + K + N + Sbjct: 234 YLTGRAIINLDDPYGQRLINSLSGEKVWSYSVNNPDANFYTKDLTYEANGVSGILHTPIG 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357 + +F PL G++ + N L A G + +G+D ++E L VPGR E V + + Sbjct: 294 EVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDIS 353 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP MGKIA +LAD+A+VT Sbjct: 354 VIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRDRTKRPKMGKIAAELADLAVVTS 413 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E+PE+I +I+ GIP + +R EAIRTAI D +++AGKGHE I Sbjct: 414 DNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTAIMDAKPGDGVLIAGKGHEDYQI 473 Query: 475 VTNGEKKMSVDCDIIREILGLIL 497 + EK D + RE L + L Sbjct: 474 LGT-EKIHFDDREQAREALTIRL 495 >gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] Length = 512 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 249/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] Length = 495 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 162/503 (32%), Positives = 242/503 (48%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + +++ DSR +G +FVA+ G++ DG FIP Sbjct: 5 NLRDLLGPWVP-----------GAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A+V + D P++ + + LS A R Y + E + Sbjct: 54 QAIAQGVAAVVAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q G +S +G TT S + + L L+ Sbjct: 114 VTGTNGKTTTTQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G T ++E SSHGL QHR+ + A FTNL RDH+DYH +Y +AK LF E Sbjct: 174 EKGATLTAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AI+ ADD + + R +A + G G+++ V N + S Sbjct: 234 VGQ--AILNADDEVGRRWLARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + PL G F V N L+A +++ A ++ +L V GR E + Sbjct: 292 SSWGNGEIDSPLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP+ I +I+ G+ R +A+ AI D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ N D + +LG Sbjct: 471 YQIIGNRRLDY-SDRATVAALLG 492 >gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 487 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 158/486 (32%), Positives = 234/486 (48%), Gaps = 14/486 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +F R+ I E++ DSR+++ G +F+A+ G DG I A+ +GA A+ Sbjct: 4 NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFV 133 AY ++ ++ P++ V LS A R YG +++ VTGT+GK+SV V Sbjct: 60 AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF L K + DD + Sbjct: 180 GLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I N DV+V+AGKGHE + NG+++ D Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475 Query: 490 REILGL 495 L + Sbjct: 476 ASALAV 481 >gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] Length = 505 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 149/496 (30%), Positives = 244/496 (49%), Gaps = 27/496 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +I + DSR I+ ++FVA+ G+ DGH FI A+ GA+ I+ ++ + Sbjct: 14 KDGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQY 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + T ++V++ RK L + AS Y +P+N + + G +G + + + Sbjct: 74 TNTTE--ITFVLVEDIRKKLGIIASNYYD-YPQNKIKIVGITGTNGKTTSSFILENILEK 130 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++ + I TTP + L K + +G + +E SSH L+ R+D + Sbjct: 131 TARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVDML 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--------------PAIIYA 248 + + FTNL +DH+D+H+T + YFNAK ++F L S Sbjct: 191 QFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYSEK 250 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D + R NA + Y + + + K + + ++ F L Sbjct: 251 KDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSDGEYKFEINLI 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE+ +YN L +++GI+ ++++E L+++ VVPGRFE + RI VD+AHT + Sbjct: 311 GEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETIKNELE-ARIVVDFAHTDD 369 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L I K ++ IT R+I +FG GGDRD KRP M K A +D I+T DNPR+E+P Sbjct: 370 GLLNIGKTLKQITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENPVN 429 Query: 428 IRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I A+I G ++ +R AI+ I+ML K D L++AGKGHET I+ EK Sbjct: 430 ILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGKGHETYQIIGT-EK 488 Query: 481 KMSVDCDIIREILGLI 496 D +I+R+IL + Sbjct: 489 THFDDREIVRKILEEM 504 >gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] Length = 512 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 249/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] Length = 484 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 229/502 (45%), Gaps = 35/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59 MKL +LI + + +I+ ++SD+R ++AG +FV I G DGH Sbjct: 7 MKLYELIK----------GVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDA 56 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 Q + +G +V L+ +VV +TR + + +G + Sbjct: 57 AQQMLDKGCAVVVCERDLGLER----------QIVVSDTRAAFPMLCAAWFGHPERELEL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + ++++ G IG + I TTP P L + Sbjct: 107 IGVTGTNGKTTITTVIKKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRR 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ G + +E SS GL+Q R+ G G FTNL +DH+D H T + Y+ AK LF+ Sbjct: 167 MADAGCKYTVMEVSSQGLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFDI 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 AII DD Y + K G + V + Sbjct: 227 ----SDSAIINIDDEYGRRYAKEIPCPYKSYSVNGSADFM--AQDVMLGTAGVKYVFDDG 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F +PG F V N+L +G + EK+ V GR E V T Sbjct: 281 RVKKNVSFNMPGLFNVSNSLAVIACMEVLGYTPCQTIREFEKIQGVRGRAEIVPTGR-DF 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + DYAHT ++L +L I+ G++ +FGCGG+RD+ KR M A + AD IVT Sbjct: 340 TVICDYAHTPDALINVLSAIKEGAKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP++I +++ G+ G ++ +R EAI A++ K D++V+AGKGHE Sbjct: 400 SDNPRNEDPDEIINDVMEGLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKGHEDY 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ G K + +++ E L Sbjct: 460 QILAGGVKIHFDEREVVAEALR 481 >gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] Length = 487 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 149/501 (29%), Positives = 239/501 (47%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++YK + + + + +SR + +FVAI G+ DGH +I Sbjct: 4 LIDILYKVTINAV-------VGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIEN 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI QGA A+V T++ +VV+++ L++ AS YG ++ V Sbjct: 57 AIKQGAIAVVCE------YLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++AS + Q+ +++G + + TTP + + + LS +++ Sbjct: 111 TGTNGKTTIASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNN 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GV +E SSHG+ Q R G+ G FTNL DH+DYH+T Y + K F + L Sbjct: 171 EGVEFCFMEVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKK-SFFDNLS 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+ ADD +++ + Y + + + D Sbjct: 230 SSAFALTNADDKNGAIMLQNTKAKQYKYGLKNYANYKAQILENSFSGMLL------KIND 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D L G F N L +G++ +L + +L V GRF+ + Sbjct: 284 SDVWTRLIGGFNASNVLAIYATAELLGLEKTEILRLISELESVSGRFQ-YLISEENITAI 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I +I + I V GCGGDRD KRP MG IA L+ AI T Sbjct: 343 VDYAHTPDALKNVLETINSIRTKNEELITVIGCGGDRDATKRPKMGHIASALSTKAIFTS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E PE I +I G+ + +R +AI+TA ++ N D++++AGKGHET Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + NGE+ D I++ +L Sbjct: 463 QEI-NGERTDFDDFKIVKNLL 482 >gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] Length = 471 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 233/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S P+ Sbjct: 1 MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + +++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH +Y AK LF + ADDA + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQAEHKIIN--ADDAVGRRWLSQLPQAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G+QG ++ ++V N + + L G F V N LVA +A+ Sbjct: 239 GNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKR +MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ Sbjct: 358 CVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGRAQAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470 >gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica] Length = 495 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 160/495 (32%), Positives = 233/495 (47%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + E + E++ DSR AG +FVAI G++ DG +IPQAIAQG A+ Sbjct: 4 RNLRSLLAPLGIDAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSV 129 + + + + P++ V + LS A + Y ++ VTGT+GK++ Sbjct: 64 IAEAQGEADSGTVQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q G S +G + TT S + + L L +G T ++E Sbjct: 124 TQLLAQWAHGLGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + FTNL RDH+DYH + Y AK LF K+ A Sbjct: 184 VSSHGLVQGRVAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD ++ + R A + +QG+++ ++ VT Sbjct: 242 DDDVGQKWLSRLPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWGGGTIDS 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G F V N L+A +A+G +LE L V GR E + VDYAH Sbjct: 302 PLMGAFNVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVF-NAPDKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R GR+ VFGCGGDRD+GKR +MG +A AD I TDDNPRSE+ Sbjct: 361 TPDALEKALLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWADYVITTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I +I+ G I R+EA+ +AI + DV++VAGKGHE +V + Sbjct: 421 PQAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKGHEDYQLVGHRRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG+I Sbjct: 481 Y-SDRLTVARLLGVI 494 >gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] Length = 531 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 154/502 (30%), Positives = 251/502 (50%), Gaps = 36/502 (7%) Query: 9 KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ +L++ L + + + ++ S + +G +FVA+ G + DGHL+I +AI +G Sbjct: 10 KNLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERG 69 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125 A +V+ A + V +TR L+ A+ Y N ++ +TGT+G Sbjct: 70 AAVVVLEDAVE-------PTPGVVCVQVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + ++ I Q SG IG + S + + +TTP + L L+ + + V Sbjct: 123 KTTTSYLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDC 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--- 241 +E SSH LD R+ ++ AG FTNL +DH+DYH ++YF K RLF ELL Sbjct: 183 AIMEVSSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDG 242 Query: 242 -SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A+I DD + ++++ + G I + + H Q + Sbjct: 243 PQLAVINRDDPWGQKLLPQTSPPVLTYGF--AAGADIRPEDITLTHQGIQARLHTPYGRL 300 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D + PL G + +YN L A+G + +GI V+ L + V GR E V + + V Sbjct: 301 DIVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQPL-VLV 359 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE +L ++ + RII VFGCGGDRD+ KRP+MG++ +D+ I+T DNP Sbjct: 360 DYAHTPDALEKVLAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVIITSDNP 419 Query: 421 RSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 R+E+P I +I+ G+ G++ +R +AIR AI + N +V++ Sbjct: 420 RTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNPGEVIL 479 Query: 464 VAGKGHETVHIVTNGEKKMSVD 485 +AGKGHET I+ + D Sbjct: 480 LAGKGHETYQILGT-RRIHFDD 500 >gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum ferrodiazotrophum] Length = 512 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 168/482 (34%), Positives = 258/482 (53%), Gaps = 22/482 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDG---HLFIPQAIAQGAEAIVVSSA--YSLQDFSAT 85 + +S DSR + G +F+ + DG F+ +AIA+GA +V S S+ + Sbjct: 33 SGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAALLVASRRHLPSVLERRQV 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 P+ VV+N ++ + AS YG+ ++ VTGT+GK++ + V+ + RSGL Sbjct: 89 SGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLVRSMLDRSGLR 148 Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + TTP ++L ++ + G+ +S+E SSH L Q R+ G Sbjct: 149 AGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSHALSQDRVAGT 208 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPAIIYADDAYSKEVMKRA 260 A FTNL RDH+DYH+T + YFNAK R + PA+I ADD Y + + ++ Sbjct: 209 FFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADDPYGRILAEQI 268 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318 G R L + + + + ++ + + +SVEG+ LPG+F + N + A Sbjct: 269 ARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPGDFNLQNIMGA 328 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +A+GI V ++ L VPGRFE + VDYAHT ++L+ IL +R Sbjct: 329 VGCALALGISPEAVEAGIQSLPGVPGRFERA-NPGGKFAVIVDYAHTDDALKNILSALRP 387 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 +T GR+I VFGCGGDRD+GKRP MGK+A +L+DI +VT DNPR+EDPE I EI G+ Sbjct: 388 LTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVTSDNPRTEDPEFIIDEIEPGLNM 447 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++ + +R AI A+ + D +++AGKGHE I+ + K D + REIL Sbjct: 448 TGRSYLREVDRRTAIARALSLAQPGDAVLIAGKGHEPYQIIGH-AKSHFDDRETAREILR 506 Query: 495 LI 496 + Sbjct: 507 SM 508 >gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] Length = 479 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V + + L Y K P++++AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG ++ LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A IG V++ L ++ V GR E + I+VDYAHT ++LE Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348 Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRA Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREI 492 +R+ Sbjct: 468 VRKC 471 >gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens SBW25] gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate ligase [Pseudomonas fluorescens SBW25] Length = 487 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 161/485 (33%), Positives = 239/485 (49%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ Sbjct: 3 LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V K LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITDVPLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G Q TTP+PI + L+ L G V++E SS Sbjct: 119 VAQALDLLGQHCGIVGTLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + TNL RDH+DYH T +AY AK +LF K + DDA Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCRVVNL--DDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ A S+ ++ ++ + T+ + L G F Sbjct: 237 FGRQLAAEDSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + + +L L KL GR + +G + + VDYAHT ++LE Sbjct: 297 LSNVLAAIGALLGLDYALDEILRVLPKLEGPAGRMQRLGGGKQPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R G+++ +FGCGGDRD+GKRP+M +I LAD +VTDDNPRSEDP +I + Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDD 415 Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G + R AI I + DV+V+AGKGHE + NGE+ D Sbjct: 416 IRAGFNDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474 Query: 489 IREIL 493 L Sbjct: 475 ADHAL 479 >gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] Length = 491 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVMMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. Sakai] gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4024] gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK966] gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. EC1212] gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. G5101] gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. 493-89] gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. H 2687] gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1125] gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1044] Length = 495 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 Q T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ +R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] Length = 479 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 S+ ++ V + + L Y K P++++AVTGT+GKSSV S++ Q Sbjct: 62 SIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG ++ LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IDFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A IG V++ L ++ V GR E + I+VDYAHT ++LE + Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKV 348 Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRA Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREI 492 +R+ Sbjct: 468 VRKC 471 >gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] Length = 499 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 159/501 (31%), Positives = 254/501 (50%), Gaps = 10/501 (1%) Query: 1 MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+ + ELI L + + I + DSR I++G FVAI G+ DG F Sbjct: 1 MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I AIAQGA ++ + + R+ P++ + + LS A RLYG H ++ Sbjct: 61 IDNAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+++ + Q + G + +G T + TT + + + L L+ Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240 Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDA + +K+ G +++ + I ++V + + Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL GEF N L+A +++G + + +L KL V GR E + Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TD Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE + Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + N D + +++L L Sbjct: 478 LANETIHY-SDRETAQQLLEL 497 >gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] Length = 499 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 160/501 (31%), Positives = 256/501 (51%), Gaps = 10/501 (1%) Query: 1 MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+ + ELI L + + I + DSR I++G FVAI G+ DG F Sbjct: 1 MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I +AIAQGA ++ + + R+ P++ + + LS A RLYG H ++ Sbjct: 61 IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+++ + Q + G + +G T + TT + + + L L+ Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E Sbjct: 181 EHGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240 Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDA + +K+ G +++ + I ++V + + Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL GEF N L+A +++G + + +L KL V GR E + + Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQRE-QKAK 357 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VDYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TD Sbjct: 358 IVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE + Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + N D + +++L L Sbjct: 478 LANETIHY-SDRETAQQLLEL 497 >gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] Length = 479 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 196/477 (41%), Positives = 273/477 (57%), Gaps = 8/477 (1%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 ++ + + + +++DSR ++ GW+F A+ G+K DG +I A+ +GA A++ Sbjct: 1 MNPAVIGGADPDVAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLT---- 56 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 D A I P+++ + R+ L+ A+R Y PE ++AVTGT+GK+SVA F +QI Sbjct: 57 -TPDSEARIGGRVPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIW 115 Query: 138 QRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +G S +G + + LTTP PI L L L+ +GVTH ++EASSHGL Q Sbjct: 116 ALTGQRSASLGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQ 175 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 RLDG+++ A +FTNL RDH+DYH + AY AK+ LFE ++ A++ D A + Sbjct: 176 SRLDGVRIKAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSF 235 Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A G R+LS G G + L A + Q + + V G+ PL G+FQ +NA Sbjct: 236 ASAAGRRGHRILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNA 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A GL IA G L +L V GR E V + G IYVDYAHT ++LE +L Sbjct: 296 LAALGLAIATGTPDDQATAALSRLAGVRGRMERVAVLANGAAIYVDYAHTPDALETVLNA 355 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 IR T+G++ VFGCGGDRD GKRP+MG + LAD IVTDDNPRSEDP IRA + Sbjct: 356 IRPHTTGKLWCVFGCGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAA 415 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 PG E G+R EAIR+A+ L DVL++AGKGHE + GE + D + RE Sbjct: 416 CPGGEEIGDRAEAIRSAVSRLGPGDVLMIAGKGHEQGQEIK-GEIRPFDDATVAREA 471 >gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] Length = 491 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 190/497 (38%), Positives = 265/497 (53%), Gaps = 15/497 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +++ + +++ +++DSR ++ IF AI GN+ DG FI Sbjct: 1 MKLTTALHR-------AGLPTDGCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRAFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ QGA AI+ + A + + D+ R LS+ A+ L P +++AV Sbjct: 54 TQALQQGACAIISTPDACAAVRQAG--HDIACIATDDPRHALSVMAAALMPAMPGHVVAV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177 TGT+GK+S FV+QI Q G ++ IG IS LTTP + +A L L Sbjct: 112 TGTNGKTSTVEFVRQIWQHQGHAAASIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTL 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV +++EASSHGL Q RLDG+ L A F+NL RDH+DYH +Y AK+RLF+ L Sbjct: 172 HEHGVDDIAIEASSHGLAQRRLDGVPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTL 231 Query: 238 LPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LP A+ AD + + A G + VG G I L +V + Q + + Sbjct: 232 LPPGGLAVANADMEGATLEALRAIAVKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVEC 291 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G + LPG +QV N L+AAGL + + + L L V GR E T G Sbjct: 292 NGTRHEVATRLPGRYQVDNMLLAAGLAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNG 351 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +YVDYAHT ++LE +L ++R SGR++ VFG GGDRD+GKRP+MG +A LAD+AIV Sbjct: 352 AAVYVDYAHTPDALERLLLSLRPHASGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMAIV 411 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPR+ED IR E++ G P + G R +AI + L DV+VVAGKGHE V Sbjct: 412 TDDNPRTEDAAAIRREVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKGHEQGQTV 471 Query: 476 TNGEKKMSVDCDIIREI 492 D +IRE+ Sbjct: 472 GT-TVLPFDDVSVIREL 487 >gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 EDL933] gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. EDL933] Length = 495 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 Q T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ +R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] Length = 471 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 229/474 (48%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG A+V + D S P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + LS A + Y + ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDDVGRRWLGQLPQAVAVSME 238 Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G+ G ++ +V N + L G F V N LVA +++ Sbjct: 239 ENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAELLASAPNLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI DV+++AGKGHE +V N D + +LG++ Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470 >gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 491 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG+ + +R EAI AI D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] Length = 539 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 197/495 (39%), Positives = 268/495 (54%), Gaps = 14/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + L+ I+ +++DSR + GW+F A+ G K DG FI Sbjct: 50 MMLSNLLADTSAAPVTSLT----GMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFI 105 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ + + P++ R+ L+L A+RL G P I A+ Sbjct: 106 ADAVERGAAAILAPAGTAWPPGVPPR----PMIQDAEPRRLLALMAARLAGAQPHTIAAI 161 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+S A F++QI G S+ +G I+ LTTP P+ LA+ L+ L+ Sbjct: 162 TGTNGKTSTADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLAR 221 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+ H ++EASSHGLDQ RLDG++L A +FTNL RDH+DYH T+ AY AK+RLF +LLP Sbjct: 222 AGIQHTALEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLP 281 Query: 240 KESPAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +PAI + A G R++ G + L + Q +TI EG Sbjct: 282 AGAPAIASPTLDQITLEALRGIARRRGLRLIIAGSPDSPLPLLAIEPHAGGQYLTIREEG 341 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 PLPG FQ N + AA + ++G ++ L +L V GR E T G Sbjct: 342 TTHRINVPLPGRFQADNIITAATIAASLGKRG--IVPLLSRLTGVRGRMEQAATLPNGAA 399 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 IYVDYAHT ++LE +L +R TSG++ VVFG GGDRD GKRP+MG+ A AD IVTD Sbjct: 400 IYVDYAHTPDALERLLDALRPHTSGKLHVVFGAGGDRDPGKRPLMGEAARTHADRLIVTD 459 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSE+P KIRA I+ P E G+R EAI AI L DVL +AGKGHE + Sbjct: 460 DNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVLAIAGKGHEQGQTIG- 518 Query: 478 GEKKMSVDCDIIREI 492 D + R I Sbjct: 519 KTVHPFDDVSVARAI 533 >gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] Length = 486 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 150/502 (29%), Positives = 233/502 (46%), Gaps = 31/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+ L+ L+ + + +I+ +S D+R I+ G +FVA+ G K DGH F+ Sbjct: 1 MRLKVLLSGVA--LLGGFA-----DEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFL 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ +GA A++ A P L+ +TR L+ ++ +G+ + + + Sbjct: 54 REAVKKGAAAVICHKAPEEPG---------PWLIAADTRAALAAVSANWFGRPADELTVI 104 Query: 121 TGTSGKSSVASFVQQICQRSGL---SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 T + G+ +G + I TTP + K L Sbjct: 105 GVTGTNGKTTTTYLLKAMLEGVLGAKVGLMGTNQNMIGEKVIPAHRTTPESWEVQKLLRD 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ G THV +E SSH L HR+DGI G FTNL RDH+D+H T + Y K LF + Sbjct: 165 MADSGCTHVVMEVSSHALALHRVDGIAFQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQ 224 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + D + S + K + ++ + Sbjct: 225 TGT-----AVLNLDDEAGRYYASIVTCPALTYSENKDQADVTAKNIRLFPDRVEFEALTT 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G P+PG F +YNAL +A+ + V L + V GR E V Sbjct: 280 GAIARVRLPIPGGFTIYNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVP-TPTDY 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT ++LE IL +R T GR+I +FGCGGDRD+ KRP+MG IA +LAD+ ++T Sbjct: 339 AVIIDYAHTPDALENILTTVRDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDPE I A+I G+ G + +R EAIR A++ D +V+AGKGHET Sbjct: 399 SDNPRTEDPEAILADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKGHETY 458 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + + + + + + G Sbjct: 459 QEIGTRRRHL-DEREEVAAYFG 479 >gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] Length = 491 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 142/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + +D R+ A +G + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIGTTSDVM-AKDIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483 >gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 497 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 138/502 (27%), Positives = 240/502 (47%), Gaps = 24/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI L+ + + ++ ++N+V S+SR ++ G +F+ + G D HL Sbjct: 1 MKLSHLIELLGNNLV---EVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLA 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P+ +GA A++ + + PI+ V ++R + + + + Sbjct: 58 PELQERGAAALIAEKKID-------VDLDIPIIYVKSSRLAEAHLYMEINDHPYKKLTTI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176 VTGT+GK++V + + I + S +G + + + + TTP P LAK + Sbjct: 111 GVTGTNGKTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYMKM 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + +E SSHGL HR+DG++ TN+ RDH+D+H + + Y+ K+R+F Sbjct: 171 AVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFNL 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 P ++ + + + ++ + T+ Sbjct: 231 ----LKPVGKAVVNSDNVNIGDIKLPRDKIITYGFGNESDFRMENLEISRTGMYFTVETP 286 Query: 297 GKDFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354 ++ YN ++ D+ +LE + VPGRFEFV Sbjct: 287 FGSKHKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKY 346 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G + VD+AHT ++LE +LK + ++ GRII+VFG GGD D+GKRP+MG+IA AD+ I Sbjct: 347 GFDVLVDFAHTPDALEKLLKTAKKLSEGRIIIVFGAGGDADKGKRPLMGEIASRFADVVI 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T D+P+ EDPE+I +I GI ++ +R EAI A+ + N+QD +++AG+GHE Sbjct: 407 LTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLIAGRGHED 466 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + D +++EIL Sbjct: 467 YQAFADYVVA-FNDKRVVKEIL 487 >gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] Length = 482 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 212/494 (42%), Positives = 298/494 (60%), Gaps = 18/494 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L + I + DSR AG++F A+ G++ DG F+ Sbjct: 1 MKLSKLAEDL---------ATGQTTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+GA AI+ I + P+L + R+ ++L A+R +G PE+++A+ Sbjct: 52 ADAEARGAAAILAGEGAE-------IATTLPVLRAADPRRAIALMAARFHGAQPEHVVAI 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGT+GK+S+A+F +QI R GL++ +G T +S + LTTP PI L + ++ L+ Sbjct: 105 TGTAGKTSIATFTRQIWARCGLAAASVGTTGVVSPSRDEYGSLTTPDPIALMRLMAELAG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHG+DQ RLDG++L A +F+NLG DH+DYH ++YF AKMRLF LLP Sbjct: 165 EGVTHAAMEASSHGIDQRRLDGVRLAAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLP 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + A + G +V++VG G F+ LK++ +Q I EG+ Sbjct: 225 KGAPAVIFADDRWSGRAIDVATSVGAKVMTVGRGGNFLTLKRLELERQRQIAEIEAEGRI 284 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL GEFQ+ NALVAAGL IA G+ +A L LE L GR + GT + G ++ Sbjct: 285 HRVVLPLAGEFQMANALVAAGLAIATGVATADALAALEHLKGAAGRLDLAGTTADGAPVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L +R T+GR++VV GCGGDRD+ KRP+MG+IA LADI IVTDDN Sbjct: 345 VDYAHKPEALENVLAAVRPFTTGRVVVVIGCGGDRDRAKRPMMGEIAARLADIVIVTDDN 404 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRAEI+ G E G+R AIR A+ D +V+AGKGHE V G Sbjct: 405 PRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVASARTGDTVVIAGKGHEVGQTVA-GI 463 Query: 480 KKMSVDCDIIREIL 493 D + +R L Sbjct: 464 THHFSDHEEVRAAL 477 >gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium chlorochromatii CaD3] gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium chlorochromatii CaD3] Length = 516 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 166/513 (32%), Positives = 244/513 (47%), Gaps = 29/513 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 L L F + + + E I VSSDSR + G +FVA+ G DGH Sbjct: 12 NLPSLTVGAFITALQAVEVTEQAGACHMEHCITAVSSDSRDMIEGALFVAVRGFCTDGHR 71 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 FI AI +GA IV + +I L V + RK L+ A+ YG + Sbjct: 72 FIESAIERGACIIVCE------ELPQSITHGCLYLRVIDARKALAHVAALFYGNPAKQLR 125 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175 + VTGT+GK++ + + ++ + S IG TTP L + Sbjct: 126 FIGVTGTNGKTTTSRIITEMLTAFAVPSGYIGTNLCRIGKRDIPLERTTPEAHELHALFA 185 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G V +E SSH L R+ G++ A FTNL +DH+D+H T QAY AK LF+ Sbjct: 186 LMVEAGCKAVVMEVSSHALLLQRVYGLRFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFD 245 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAI 285 + L + AI+ DDAY+ +++R + G+ + A Sbjct: 246 Q-LQPDGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQANVPSVLQCPQYGQDFQAEVRHAS 304 Query: 286 HNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 ++ + + + L G + V N L AA +G+ A + L +H V G Sbjct: 305 LAATEMELRFPKGETELLTVGLAGSYNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDG 364 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIM 402 R E VG + +I+VDYAHT ++L+ L+ ++ + R++V+FGCGG+RD+ KRPIM Sbjct: 365 RMERVGRPNLPYQIFVDYAHTPDALQKALETLKALKGEEARLMVLFGCGGNRDRLKRPIM 424 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQD 460 G IA LAD+ I+T DNPR E P+ I EI G+ G +R EAIRTAI L D Sbjct: 425 GSIAASLADVVILTSDNPRDESPDAILDEIEQGMQGAAHQRIADRAEAIRTAISQLQAGD 484 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 VL++AGKGHE V G++ D + + L Sbjct: 485 VLLIAGKGHERYQEVA-GKRTYFSDQEEVGRCL 516 >gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] Length = 499 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 166/497 (33%), Positives = 243/497 (48%), Gaps = 24/497 (4%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 EL+ L I + + + DSR IQ+G++FVAI G K DGHL+I A+ +GA Sbjct: 2 TLAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A+V++ T+ + VD+TR L A+R Y + + VTGT+GK Sbjct: 62 VAVVLAQE-------RTLPPGVAWVRVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ +Q I + G + +G TTP + L L + S V Sbjct: 115 TTTTHLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----E 241 +E SSH L HR+ G + FTNL +DH+D+H + YFN K RLF+ L Sbjct: 175 VMEVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGP 234 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A+I DD Y + G + + + ++ G + Sbjct: 235 KYAVINGDDPYGSRLAALTPVPVVTYGC--TPGCQVRARDIHLETGGSTSLVTWPGGEAA 292 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G + +YNAL A + + GID + + L + VPGR E V + VD Sbjct: 293 MELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERVDQGQ-PFTVVVD 351 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + LE +L+ R +T GR++VVFGCGGDRD+GKRP+MG+ A L+D +I+T DNPR Sbjct: 352 YAHTPDGLENVLRAARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSIITSDNPR 411 Query: 422 SEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 SEDPE I A+I+ G+ + +R AI A+ + D++V+AGKGHET IV Sbjct: 412 SEDPEAIIADILPGVREVPGASYQVLVDRRRAIAAALALARPGDMVVIAGKGHETYQIVK 471 Query: 477 NGEKKMSVDCDIIREIL 493 + + D + RE L Sbjct: 472 D-KTLPFDDRQVAREEL 487 >gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae] Length = 495 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 156/487 (32%), Positives = 251/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ EDG FI +AIAQGA ++ Sbjct: 11 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLA 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 71 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 428 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486 Query: 489 IREILGL 495 +++L L Sbjct: 487 AQQLLEL 493 >gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani ATCC 19707] gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosococcus oceani ATCC 19707] gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] Length = 519 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 152/502 (30%), Positives = 241/502 (48%), Gaps = 21/502 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ + + +ER+I+ +S DSR + G +F A G + GH I Sbjct: 22 LSDLLAEW---------VSIGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGA 72 Query: 63 AIAQGAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ QGA AIV S + N P++ + + + + A R Y + +L Sbjct: 73 AVDQGAAAIVYDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVL 132 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV+ F+ Q R G+ +G Q + LTTP + + + L+ + Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAM 192 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ + + +E SSH L+Q R++G+ FTNL R+H+DYH Y AK RLF + Sbjct: 193 AAARIRYTVLEVSSHALEQGRVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQP 252 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I A + + + ++ +T+ Sbjct: 253 ELRHAVINIDDV-AGRAFLANLPSEVAAISYGITNPQANLWASELHCDRYGIAMTVQSAW 311 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F YN L A G + +G+ L+ L ++ V GR E G Sbjct: 312 GEGQLTCSLLGRFNAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPL 371 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L +++ GR+ VFGCGGDRD+GKRP+MG A LAD I+ Sbjct: 372 LVVDYAHTPDALEQVLCSLQMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVIL 431 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPR EDP +I +I+ GI + +R EAI A ++ +D++++AGKGHE Sbjct: 432 TDDNPRDEDPIQIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHEEY 491 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + E++ D + ++E L Sbjct: 492 QQIGA-EQRPFSDREQVQEALR 512 >gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] Length = 484 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 159/489 (32%), Positives = 252/489 (51%), Gaps = 23/489 (4%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +IN +++ + +S +S+ ++ +F I G DG+ FI A+++GA ++ Sbjct: 2 NIINMSHNLKQLFQQHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVI 61 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + ++ ++ V + + L Y K P+N++AVTGT+GKSSV S+ Sbjct: 62 TDNKKNIVIDK--------VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKSSVVSY 113 Query: 133 VQQICQRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + Q G + IG + LTT + K L+ G+ ++ Sbjct: 114 IAQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVF 173 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ Sbjct: 174 EASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 233 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +D + V HN + ++VG +G + ++ Q + + ++++F P+ Sbjct: 234 SDIEEIEFVKDYLHNHNIKFITVGKKGDLE-ITRINGSLKGQNINFTFNNREYNFNTPII 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G FQ N L+A G V++ L ++ V GR E + I+VDYAHT + Sbjct: 293 GSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTHIFVDYAHTPD 348 Query: 368 SLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR+EDP Sbjct: 349 ALAKALTELKNIKLRGSKLSVVFGCGGNRDKAKRSLMGQIAAKHADTIIITDDNPRNEDP 408 Query: 426 EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + IRAEII GI + E NR EAI+ I L + D L+VAGKGHE I+ + +K Sbjct: 409 KLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAGKGHENYQIIGD-KKLPF 467 Query: 484 VDCDIIREI 492 D +++R+ Sbjct: 468 DDAEVVRKC 476 >gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] Length = 499 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 159/498 (31%), Positives = 252/498 (50%), Gaps = 16/498 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +LI L + + I + DSR I++G FVAI G+ DG FI + Sbjct: 11 LSELIAPW-------LELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA A++ + R P++ + + LS A RLYG H ++ VTG Sbjct: 64 AIAQGANAVLAEADAHHAHGQVEYREAVPVMYLSELDQHLSEMAGRLYGGHHNQLIGVTG 123 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q + G + +G T + TT + + + L L+ +G Sbjct: 124 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 183 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + Sbjct: 184 AQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 243 Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII DDA + +K+ G +++ + I ++V + + + Sbjct: 244 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEG 301 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL GEF N L+A +++G + + +L KL V GR E + V Sbjct: 302 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNP Sbjct: 361 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 420 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P+ I A+++ G+ + +R +A A++ QD++++AGKGHE ++ N Sbjct: 421 RSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALKHAGAQDIILLAGKGHEDYQVLAN 480 Query: 478 GEKKMSVDCDIIREILGL 495 D + +++L L Sbjct: 481 ETIHY-SDRETAQQLLEL 497 >gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 491 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 144/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG+ + +R EAI A+ D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus B4264] gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus B4264] Length = 491 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 487 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 158/479 (32%), Positives = 234/479 (48%), Gaps = 14/479 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G + DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S + +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G R +AI I N DV+V+AGKGHE + +G++ D Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQE 474 >gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] Length = 495 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 166/505 (32%), Positives = 249/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +FVA++G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L+ Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 AQGATVGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + + Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFT 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV + D +LG+I Sbjct: 471 YQIVGSQRLDY-SDRVTAARLLGVI 494 >gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] Length = 921 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 237/503 (47%), Gaps = 10/503 (1%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 K + I P L + L +Q + +++ DSR +G +F+AI G++ DG +IP Sbjct: 420 KKKKRIQVADPNLSDLLGALGIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIP 479 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + PI+ +DN LS A Y + E + + Sbjct: 480 QAIAQGVSAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIG 539 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S +G TT S + + L L Sbjct: 540 VTGTNGKTTTTQLLAQWAQGLGEISAVMGTVGNGLLDHVVPAMNTTGSAVDIQLELQQLL 599 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL Q R+ + +A FTNL RDH+DYH Y AK LF Sbjct: 600 NQGATLTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHH 659 Query: 239 PKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 E + + L +QG+F+ ++ + S Sbjct: 660 SGEKIINADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSS 719 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G F V N L A +A+G V+ L V GR E N+R Sbjct: 720 WGEGIIESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRPT 779 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG +A +LAD ++T Sbjct: 780 -VIVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELADKVVIT 838 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DDNPRSE+P+ I +I+ G+ I R EA+ I + D+++VAGKGHE Sbjct: 839 DDNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKGHEDYQ 898 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 +V + D + +LG+I Sbjct: 899 LVGSRRLDY-SDRLTVARLLGVI 920 >gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 486 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 159/479 (33%), Positives = 233/479 (48%), Gaps = 14/479 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G R +AI I N DV+V+AGKGHE + +G++ D Sbjct: 417 RPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQE 474 >gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + + E+ DSR AG +FVAIVG+K DG +IP Sbjct: 5 NLRDLLAPWVQD-----------APACALREMILDSRVAAAGDLFVAIVGHKADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D + P++ + + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAIVAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S +G A TT S + + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL Q+R+ + A FTNL RDH+DYH ++Y AK LF E Sbjct: 174 EQGATFAAMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294 + ADD + + +A + G +G+++ ++ N + Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +++G ++ +L V GR E + Sbjct: 292 SSWGQGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA LAD + Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPRSE+P+ I A+I+ G+ R EA+ +AI + DV++VAGKGHE Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG+I Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494 >gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 491 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI + D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plautia stali symbiont] Length = 495 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 243/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P + R + +++ DSR AG +F+A+ G+ DG FIP Sbjct: 5 NLRDLLAPWVPGALA-----------RPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119 QAIAQG A++ + D P++ + + LS A R Y + ++ Sbjct: 54 QAIAQGVAAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q G + +G + TT S + + L L Sbjct: 114 VTGTNGKTTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH Q Y +AK LF E Sbjct: 174 GQGATVAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E AII ADD + +++ +A L G +G+++ + V S Sbjct: 234 VGE--AIINADDEVGRRWLEKLPDAVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + +F L G F V N L+A + + ++ +L V GR E T Sbjct: 292 SSWGNGEFDSRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQPVCGRMEVF-TAVH 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSE+P I +I+ G+ R +A+ A+ + D+++VAGKGHE Sbjct: 411 ITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ N D D + +LG++ Sbjct: 471 YQIIGNRRLDY-SDRDTVARLLGVM 494 >gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae DSM 12163] Length = 495 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 240/503 (47%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR + +FVAI G+ DG FIP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + +D P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + ++E SSHGL QHR+ + A +FTNL RDH+DYH Y AK LF E Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + +++ +A + G G+++ KV +V S Sbjct: 234 VGQ--AIINADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N LVA +++ + +L V GR E + Sbjct: 292 SSWGEGNIDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP I +I+ G+ R +A+ + + D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + D D + +LG Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLG 492 >gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] Length = 491 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ ++ L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 491 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 144/503 (28%), Positives = 233/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHDREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ V++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++ G + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] Length = 512 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 156/487 (32%), Positives = 249/487 (51%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI +AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I ++V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE V E D + Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQ-VQANETIHYSDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] Length = 512 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 164/507 (32%), Positives = 250/507 (49%), Gaps = 26/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DLI + I L ++ +SSDSR + G +F+A+ G DGH FI Sbjct: 1 MSLADLIRQ-----IPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA A++ + ++ P L V++ R+ L+L A + YG + +++ Sbjct: 56 KSAVERGAAAVLCE-----EIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A + + G+ + IG TTP L + Sbjct: 111 GVTGTNGKTTTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH L R+ GI A FTNL +H+D+H+T Q Y AK +LFE+ Sbjct: 171 LDSGCSVAVMEVSSHALVLQRVYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQ- 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-------VGYQGKFIHLKKVCAIHNKQQ 290 L + A+I +DD ++E++ + + + G + + + Sbjct: 230 LSPQGFAVINSDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASAT 289 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + LPG++ V N L AA + +G+ S +V L+ L V GR E + Sbjct: 290 IRLCFPDAQQTISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIM 349 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 R ++VDYAHT ++L L + + + R+IVVFGCGG+RD+ KRP MG+IA++ Sbjct: 350 DRRRKEFVFVDYAHTPDALFKALSTLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVE 409 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD+ I+T DNPR EDPE I EI GI +R +AIRTA+ +L DVL+VAG Sbjct: 410 NADLVILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE GEK D + +R L Sbjct: 470 KGHEQYQETA-GEKSFFSDQETLRNAL 495 >gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] Length = 493 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 222/499 (44%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ L + + P Q + ++ DSR +Q +FV I G DGH + Sbjct: 6 MYAEELLSALP--LKKIIGMLPDQ-----VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYA 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA +V L + ++V +T + + L A++ + + ++ Sbjct: 59 QKAVDGGATIVVTERELPLGET-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV +Q I G S G + ++ TT + + + Sbjct: 112 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235 +G +++E SSHGL RL G+ FTNL DH+D+H T + Y +AK + Sbjct: 172 KMEGCRLMTMEVSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 231 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +++ ++ D E + + + + Sbjct: 232 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEM 291 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L GEF +YN L A G ++E +E+L V GR E V + Sbjct: 292 SEGIYRVKMNLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKV-CSDLP 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +++VDYAHT +++E ++ + G++I + G GG+RD+ KRP M + A A+ I+ Sbjct: 351 VQMFVDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 409 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T D+PR ED I ++ G+ F G+R EA+R AIE+ D+++ AGKGHE Sbjct: 410 TTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREI 492 I+ N K D +I E Sbjct: 470 IIEN-TKFPHSDAEIAIEA 487 >gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] Length = 501 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 152/483 (31%), Positives = 228/483 (47%), Gaps = 17/483 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT-- 85 + +++ DSR + G +F+A+ G++ DG FI AI QGA I+ + + Sbjct: 19 IPLKQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQ 78 Query: 86 ------IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 R ++ V + LS A Y + + +TGT+GK++ A + Q Sbjct: 79 FARYNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQWH 138 Query: 138 QRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S +G Q+ TT S I + + L+ QG ++E SSHGL Q Sbjct: 139 NLLGGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQ 198 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +R++ ++ FTNL RDH+DYH + AY AK RLF L K A + Sbjct: 199 YRVEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQVLNADDQVAQNWLS 258 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M + + +F+ KV + + F L G F V N L Sbjct: 259 MLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSGAFNVTNIL 318 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILK 374 +A + +G D A ++ +L V GR + V + R V DYAHT ++L+ L+ Sbjct: 319 LALAGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTPDALQKALQ 378 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R T G++ VFGCGGDRD GKRP+M IA +LAD IVT+DNPR+ED KI AEI+ Sbjct: 379 AARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQHKIVAEIMQ 438 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + +R +AI+ AI+ + D++++AGKGHE I+ K D +I + Sbjct: 439 GFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKGHENYQIIGT-IKHHFSDQEIASK 497 Query: 492 ILG 494 L Sbjct: 498 YLS 500 >gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] Length = 488 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 217/471 (46%), Gaps = 19/471 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I+ G +F A+ G DG FI +A GA +V + P++ Sbjct: 23 LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG-------DIGPCSVPVIE 75 Query: 95 VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +DN + L A+ YG ++ AVTGT+GK++ A+++ + R G IG Sbjct: 76 IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135 Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +TTP P+ L + L S+G ++EASS GL+Q RLDG ++ FT Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269 NL RDH+DYH T + Y AK LF + + A V + Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSA 255 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G Q ++ + + + + +G F G F V N L G I++G + Sbjct: 256 KGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEI 315 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIV 386 VL+ + KL GR + V + G VDY+HT +++ +K + GRI + Sbjct: 316 ETVLKEVAKLMPPAGRMQIVRDDH-GPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIWI 374 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445 V G GGDRD GKRP+MG+ A AD ++T DNPRSED ++I +I G +R Sbjct: 375 VVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIEDR 433 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI A E DV++VAGKGHE V G K D + RE L + Sbjct: 434 RKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREALRKL 483 >gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 491 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] Length = 481 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 152/499 (30%), Positives = 253/499 (50%), Gaps = 32/499 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E+IN + ++ I ++ DSR I+ +F A++G DGH +I +A+ Sbjct: 3 EIFENVEYEVIN-------KGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAV 55 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA+ ++ + + VDN RK L + AS +G + I+ +TG Sbjct: 56 NSGAKMVIAEKK-----DITVADKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK++ + + + + ++ +IG + TTP + L K L +G Sbjct: 111 TNGKTTSSYILDSMLE----NTSRIGTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKG 166 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V + +E SSH L+ R+D ++ + FTNL +DH+DYH+ + YFNAK +LF L + Sbjct: 167 VEYFIMEVSSHALEIGRVDMLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSM-LRNK 225 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A + DD+Y + + + + + + K + + ++ +G ++ Sbjct: 226 DAAAVNIDDSYGERIYNSNKSYKSYSI---IKDSDLKGKIEEYHNGGMKASVIFQGAEYF 282 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F L G++ +YN L G+ + +G D ++E ++++ VPGRFE V + R+ VD Sbjct: 283 FDTKLVGDYNLYNLLGCIGVLLNLGFDIRDIIERVKRVGYVPGRFELV-NEGQDFRVIVD 341 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT N LE IL+ +R IT R+I +FG GGDRD KRP M + A +D I+T DNPR Sbjct: 342 YAHTDNGLENILETVRKITEKRVITIFGAGGDRDNTKRPKMARAAAKYSDFVIITSDNPR 401 Query: 422 SEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +EDP +I ++ G+ + +R +AIR IEM + D L++AGKGHE I Sbjct: 402 TEDPAEITRQVEKGLTDIDFPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKGHEDYQI 461 Query: 475 VTNGEKKMSVDCDIIREIL 493 + EK D + R+ L Sbjct: 462 LGR-EKIHFDDREQARKYL 479 >gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] Length = 490 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 233/503 (46%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ + E++ + ++ E+++DSR + G FV I G DGH ++ Sbjct: 1 MRLTDLLERLEYEVVQGS-------EKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + +GA+A++V D ++ VD+TR L+L ++ +G E ++ Sbjct: 54 KEVAEKGAKAVIVEKQVEAPD-------GVTVIHVDDTRYALALMSAAYFGYPAEQLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + G IG T I A TTP + K + Sbjct: 107 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI+ G FTNLG DHI + + + + Sbjct: 167 VDAGCDCVVMEVSSQGLMLHRTAGIEFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGI 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L + I D E + R + + ++ + Sbjct: 224 LFTQCRLGIANVDDRWFEDVFRNATCRTETFGFSEKADLRATDVEHISRPGYLGVKYHVS 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PGEF VYN+L A +C + + + + L+ V GR E V + Sbjct: 284 GLMDFDVEIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKALKVAKVK-GRIEMVKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L +R GR++ VFGCGG+R + +R MG+++ LAD ++ Sbjct: 342 FTLMIDYAHNAMSLESLLATLRDYDPGRLVTVFGCGGNRSRTRRFEMGEVSGKLADFTVI 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +II GI + +R EAIR AIE DV+++AGKGHET Sbjct: 402 TSDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKGHET 461 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K D +I E+L Sbjct: 462 YQEIK-GVKYDMDDRVLIAEVLE 483 >gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] Length = 512 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + + I + DSR I++G FVAI G+ DG FI AIAQGA ++ Sbjct: 28 IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLA 87 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R+ P++ + + LS A RLYG H ++ VTGT+GK+++ + Sbjct: 88 EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147 Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q + G + +G T + TT + + + L L+ +G + ++E SSH Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + +AG F+NL RDH+DYH T +AY AK LF E + AII DDA Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265 Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +K+ G +++ + I + V + + + + PL GEF Sbjct: 266 GAQWVKQLPQAIGVSLVAKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLIGEFN 325 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A +++G + + +L KL V GR E + VDYAHT ++LE Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R +G++ + GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+ Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ G+ + +R +A A++ QD++++AGKGHE ++ N D + Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503 Query: 489 IREILGL 495 +++L L Sbjct: 504 AQQLLEL 510 >gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 491 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + V A V + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483 >gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 484 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 140/504 (27%), Positives = 230/504 (45%), Gaps = 34/504 (6%) Query: 2 KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 KL+D+++ E++ QL + ++ + DSR G +FVA+ G DGHLF+ Sbjct: 3 KLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI QG I+V + + ++V +T L + A YG ++ Sbjct: 55 EKAIEQGCTLIMVE------EMPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G + + I TTP P+ L L + Sbjct: 109 GVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G + +E SSH + Q R+ G++ G F+N+ DH+D+H+T Y AK + F++ Sbjct: 169 VDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD- 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + A+ D+ +++ G + + + Sbjct: 228 LDRFAFALTNGDEKNGSVMLQNTFAHKKTYGLKGVADFKAKIIESHFDGMLLNIEGHEVW 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F YN L G I + ++ VL L ++ GRFE T+ G Sbjct: 288 VKLVGEFNA------YNILAVYGAAILLEQETVKVLTALSQITGAEGRFE-AITSKNGVI 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT +++ +L I + +II V GCGGDRD+ KRP M ++A ++D I+ Sbjct: 341 GIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVII 400 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+EDP +I ++ GIP +R EAIR A + D+++VAGKGHE Sbjct: 401 TSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + NG K D + + + Sbjct: 461 KYQDI-NGVKHHFDDREELEKTFN 483 >gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] Length = 488 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 216/471 (45%), Gaps = 19/471 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I+ G +F A+ G DG FI +A GA +V + P++ Sbjct: 23 LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG-------DIGPCSVPVIE 75 Query: 95 VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +DN + L A+ YG ++ AVTGT+GK++ A+++ + R G IG Sbjct: 76 IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135 Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +TTP P+ L + L S+G ++EASS GL+Q RLDG ++ FT Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269 NL RDH+DYH T + Y AK LF + + A V + Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSA 255 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G Q ++ + + + + +G F G F V N L G I++G + Sbjct: 256 KGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEI 315 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIV 386 VL+ KL GR + V + G VDY+HT +++ +K + GRI + Sbjct: 316 ETVLKEAAKLMPPAGRMQIVRDDH-GPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIWI 374 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445 V G GGDRD GKRP+MG+ A AD ++T DNPRSED ++I +I G +R Sbjct: 375 VVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIEDR 433 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI A E DV++VAGKGHE V G K D + RE L + Sbjct: 434 RKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREALRKL 483 >gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 491 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + V A V + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483 >gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 491 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ ++ L VPGRFE V Sbjct: 284 VTPNESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] Length = 487 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 147/501 (29%), Positives = 249/501 (49%), Gaps = 32/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK + + I ++ DSR + +FVAI G + DGH +I + Sbjct: 4 LKDILYKVTLD-------KVLGNTAVAIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+ QGA AI+ + + I + + V+++++ L++ A YG ++ V Sbjct: 57 AVDQGAIAIICET------IPSEIINGITYIQVEDSQEALAIMADNYYGNPSAQIKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++A+ + + +G + + + TTP + + + L + Sbjct: 111 TGTNGKTTIATLLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV++ +E SSHG+ Q R +G+ G FTNL DH+DYH+ + Y + K + F++ L Sbjct: 171 AGVSYCFMEVSSHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQ-LS 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + A++ ADD +++ + + + ++ Sbjct: 230 KTAFALVNADDKNGMVMLQNTSAKKVTYALKSMADHKAQILENQLQG------LLLKLDG 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F YN L +G+++ L+ + L V GRF+ ++ Sbjct: 284 QELWVKLIGNFNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQ-YFISNTKVTAV 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I TI +G I V GCGGDRD KRPIMGKIA L+ AI T Sbjct: 343 VDYAHTPDALKNVLETINTIRTGNEQLITVVGCGGDRDVTKRPIMGKIAAQLSTKAIFTS 402 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E PE I +I G+ + +R +AI+TA ++ N+ D++++AGKGHET Sbjct: 403 DNPRTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V GE+ D I++++L Sbjct: 463 QEVQ-GERTDFDDYKIVKQLL 482 >gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] Length = 493 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 222/499 (44%), Gaps = 24/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ L + + P Q + ++ DSR +Q +FV I G DGH + Sbjct: 6 MYAEELLSALP--LKKIIGMLPDQ-----VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYA 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ GA +V L + ++V +T + + L A++ + + ++ Sbjct: 59 QKAVDGGATIVVTERELPLGEM-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV +Q I G S G + ++ TT + + + Sbjct: 112 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235 +G +++E SSHGL RL G+ FTNL DH+D+H T + Y +AK + Sbjct: 172 KMEGCRLMTMEVSSHGLALGRLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 231 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +++ ++ D E + + + + Sbjct: 232 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEM 291 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L GEF +YN L A G ++E +E+L V GR E V + Sbjct: 292 SEGIYRVKMNLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKV-CSELP 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +++VDYAHT +++E ++ + G++I + G GG+RD+ KRP M + A A+ I+ Sbjct: 351 VQMFVDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 409 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T D+PR ED I ++ G+ F G+R EA+R AIE+ D+++ AGKGHE Sbjct: 410 TTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREI 492 I+ N K D +I E Sbjct: 470 IIEN-TKFPHSDAEIAIEA 487 >gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] Length = 495 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 211/486 (43%), Positives = 281/486 (57%), Gaps = 8/486 (1%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ + + + + + E + DSR +AG +F A+ G+K DG F A+A+G Sbjct: 16 TLRELVGEDADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVL 75 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V + + + V N R+ ++L A+R + K PE I AVTGTSGK+SV Sbjct: 76 AVVAEAE-----RPPWFDPSVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSV 130 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A+F +QI R G +S +G ++ LTTP PI L + L L+ +GVTH+ +E Sbjct: 131 AAFARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLE 190 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGLDQ+RLDG++L AG FTNL RDH+DYH + +AY +AKMRLF ELLP+ A ++ Sbjct: 191 ASSHGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWV 250 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D V + A + VL +G G I L Q + + +G+ F PL G Sbjct: 251 DSTEGSHVAQVAADHELNVLGIGVAGAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVG 310 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ NALVAAGL + G + L LE L VPGR E VGT G ++VDYAH ++ Sbjct: 311 AFQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKD-GAGVFVDYAHKPDA 369 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L L +R +GR+IVVFGCGGDRD+GKRPIMG IA + AD+ IVTDDNPRSEDP I Sbjct: 370 LANALDALRPYATGRLIVVFGCGGDRDRGKRPIMGAIAAEKADVVIVTDDNPRSEDPAFI 429 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 RA I+ P E G+R EAI AI M DV+++AGKGHET IV + D D Sbjct: 430 RAAILEAAPEAQEIGDRAEAIAAAIGMAKSGDVVLIAGKGHETGQIVGD-RTLPFSDRDT 488 Query: 489 IREILG 494 +L Sbjct: 489 AVAVLE 494 >gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] Length = 504 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 237/494 (47%), Gaps = 14/494 (2%) Query: 13 ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 E I+ + + R + V DSR + AG +FVA+ G DG+ FI A+ QGA AI Sbjct: 5 EAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + SA + + +V++ R+ L+ ++ ++G+ + + AVTGT+GK++ Sbjct: 65 ITDSAETFAALRERQPE-LAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A ++Q+ + G S +G T +++ TTP + + G T V +E Sbjct: 124 AFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L+Q R+ G+ + FTNL +DH+DYH T +AYF AK R+F + + Sbjct: 184 MSSHALEQERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAVIN 243 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D+ + M + + + V + PL G Sbjct: 244 LDSEYGDEMCHEFRGATLMTYGMGEFGNYRAENVSLALGDTRFDFVTPEGRIAMHSPLSG 303 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSN 367 V N L A+ +A G+ V E LH VPGRF+ V G+ + G + VDYAHT + Sbjct: 304 RVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAHTDD 363 Query: 368 SLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +L ++ R GR I +FGCGGDRD+ KRP MG+ A + +D+ +VT DNPRSE+ Sbjct: 364 ALRNLIALARESVVGHGGRAITLFGCGGDRDKTKRPKMGRAAGEDSDLVVVTSDNPRSEE 423 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P I E + G+ FI + +R AI AI D++++AGKGHE V I +G Sbjct: 424 PMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKGHEKVQIFADGTV 483 Query: 481 KMSVDCDIIREILG 494 D +L Sbjct: 484 -PFDDVAEAERVLR 496 >gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] Length = 479 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 252/484 (52%), Gaps = 23/484 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V + + L Y K P++++AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG ++ LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A IG V++ L ++ V GR E + I+VDYAHT ++LE Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348 Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRA Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 II GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 AIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREI 492 +R+ Sbjct: 468 VRKC 471 >gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 484 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 141/504 (27%), Positives = 230/504 (45%), Gaps = 34/504 (6%) Query: 2 KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 KL+D+++ E++ QL + ++ + DSR G +FVA+ G DGHLF+ Sbjct: 3 KLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI QG I+V + A ++V +T L + A YG ++ Sbjct: 55 EKAIQQGCTLIMVE------EMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G + + I TTP P+ L L + Sbjct: 109 GVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G + +E SSH + Q R+ G++ G F+N+ DH+D+H+T Y AK + F++ Sbjct: 169 VDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD- 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + A+ D+ +++ G + + + Sbjct: 228 LDRFAFALTNGDEKNGSVMLQNTFAHKKTYGLKGVADFKAKIIESHFDGMLLNIEGHEVW 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F YN L G I + ++ VL L ++ GRFE T+ G Sbjct: 288 VKLVGEFNA------YNILAVYGAAILLEQETVKVLTALSQITGAEGRFE-AITSKNGVI 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT +++ +L I + +II V GCGGDRD+ KRP M ++A ++D I+ Sbjct: 341 GIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVII 400 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+EDP +I ++ GIP +R EAIR A + D+++VAGKGHE Sbjct: 401 TSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + NG K D + + + Sbjct: 461 KYQDI-NGVKHHFDDREELEKTFN 483 >gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 138/513 (26%), Positives = 232/513 (45%), Gaps = 29/513 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L++L+ + + ++ I ++ DSR G++F+A+ G DG ++ Sbjct: 1 MQLKNLLAALEQPPTHIYGANTLPEQDT-ILGLAYDSRKAAPGYLFIAVPGVHTDGRRYV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A GA + + I P + V++ R L+ A YG + Sbjct: 60 ADAAQHGAVVAL------GAPLPSAIDLPIPYIEVEDVRTALADLACAFYGFPARELCTI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALS 175 VTGT GK++ ++ + + +G + + + +A R +T + + + L Sbjct: 114 GVTGTDGKTTTSNIISTLFDAAGRRTGMMTTANFKLNGQEWANATRQSTLEALEIQEFLR 173 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + TH +E++SHGL+ R+ G G TN+ +H+D+H+T AY AK RLFE Sbjct: 174 KMVEMQATHAVIESTSHGLELQRVRGCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFE 233 Query: 236 E------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 I D S EV+K + + + + ++ Sbjct: 234 MLDPEQDKGQGYRKVAILNKDDSSYEVLK-PYCRVPILDYGIETDAAVRAVDLHLQASRT 292 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + PL G F V N L A + GI ++ + L + VPGR E Sbjct: 293 AFRLILPDAECQIETPLIGRFNVSNCLAAIATAYSQGIPLDVITQTLATIKGVPGRME-H 351 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VDYAHT++SL+ +L +R +T+G+++VVFG G+RD+ KRP+MG +A + Sbjct: 352 IDEKQNFSVIVDYAHTADSLQKVLAILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAAQM 411 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDV 461 +D ++TD++PR ED E I EI G F+ +R EAI TA D Sbjct: 412 SDFFVITDEDPRDEDRESILREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDT 471 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +++AGKGHE I+ +K D + RE L Sbjct: 472 VLLAGKGHEQSIIIGR-DKLPWDDRQVAREELR 503 >gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] Length = 491 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia africae ESF-5] gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia africae ESF-5] Length = 479 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V + + L Y K P++++AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG ++ LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-IIRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A IG V++ L ++ V GR E + I+VDYAHT ++LE Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348 Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRA Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408 Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 EIISGIGKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREI 492 +R+ Sbjct: 468 VRKC 471 >gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 491 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 233/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ ++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] Length = 491 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + V A V + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483 >gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] Length = 483 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 156/502 (31%), Positives = 237/502 (47%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + ++++ +DSR ++ G +FVA G DG L+I Sbjct: 1 MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 + + V+ Y + I + P + + + L A R + + + Sbjct: 51 ----EKAVASGAVAVVYEPNNLPQGITLPTGIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106 Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175 VTGT+GK+++A + Q G S IG + TTP + L + + Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G+ V +E SSH L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE Sbjct: 167 QYKEGGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + AII DD + + +V +Q + + ++ + Sbjct: 227 RAELQW--AIINQDDDFQDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEVKS 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+F +YN+L +A G + V++ + +L PGR E V + Sbjct: 285 PWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRMEIVAQSPY- 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++ Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDPE I EI GIP + NR EAI A+ D++++AGKGHE+ Sbjct: 402 TSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + N K + D +++R ++ Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482 >gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] Length = 499 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 188/499 (37%), Positives = 270/499 (54%), Gaps = 13/499 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L + I +++DSR ++ G++F A+ G K DG FI Sbjct: 1 MRLSQLRPSRAEADPGAADQARPAGADPDIAGLTADSRAVRPGFVFAALPGVKADGRAFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILA 119 A+A+GA A++ L S + P R + A+ +G + PE ++A Sbjct: 61 ADALAKGAVAVLAPEGTELPAGSTALLLTDPQ-----PRLAFARMAAAFHGGRQPETVVA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLS 178 VTGT+GK+S F QI R GL + +G + +TTP P+ L + L+ Sbjct: 116 VTGTNGKTSTVQFAAQIWARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAK 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ H+++EASSHGL+Q RLDG+ + A FTNL DH+DYH T +AY +AK LF+ +L Sbjct: 176 DAGIDHLAMEASSHGLEQFRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVL 235 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P A++ AD G RVLS G G + + V + + Q+++++V G+ Sbjct: 236 PAGCIAVLNADSDDFHFFATICDERGQRVLSYGLAGAELRVTGVEPLAHGQRLSLTVLGR 295 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D PL G FQ +N L A GL I G D+ L L L VPGR + V T+ G + Sbjct: 296 DVTVDLPLAGRFQAWNVLCALGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGATV 355 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVD+AHT ++LE +L +R+ + ++ VFGCGGDRD+ KRP+MG +A LAD AIVTDD Sbjct: 356 YVDFAHTPDALETVLLALRSHAARDLVTVFGCGGDRDRTKRPVMGALAARLADRAIVTDD 415 Query: 419 NPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 NPR+EDP +R+E++ G E G+R EAIRTA+ L DVLV+AGKGHE Sbjct: 416 NPRTEDPAFVRSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKGHEQGQ 475 Query: 474 IVTNGEKKMSVDCDIIREI 492 + E + D D R+ Sbjct: 476 TIGT-EVRPFDDADEARKA 493 >gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] Length = 495 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 155/493 (31%), Positives = 231/493 (46%), Gaps = 10/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + + E + E++ DSR AG +FVA+ G++ DG +IPQAIAQG A+ Sbjct: 4 RNLRDLLAPWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + + P++ +D+ LS A Y ++ VTGT+GK++ Sbjct: 64 IAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G S +G + TT S + + L L +Q T ++E Sbjct: 124 TQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-- 246 SSHGL Q R+ + A FTNL RDH+DYH + Y AK LF K+ Sbjct: 184 VSSHGLVQGRVAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQKIINADD 243 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + L + G+++ + +T + PL Sbjct: 244 DVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLNSPL 303 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L+A +++ +LE L V GR E R + VDYAHT Sbjct: 304 MGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRP-TVVVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L R G++ VFGCGGDRD+GKR +MG IA AD IVTDDNPRSE+P Sbjct: 363 DALEKALSAARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQGADRVIVTDDNPRSEEPH 422 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ G + R+EA+ +AI ++DV++VAGKGHE +V N Sbjct: 423 SIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKGHEDYQLVGNRRLDY- 481 Query: 484 VDCDIIREILGLI 496 D + +LG+I Sbjct: 482 SDRLTVARLLGVI 494 >gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 491 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 229/502 (45%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL L++ L FP+ +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLH--------TLVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + + I + P+++V NT + L++ A YG+ + Sbjct: 53 ---------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ + + +I + G + IG + I + + TTP + L + + Sbjct: 104 IGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAK 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233 + GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 164 MVEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQ 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ + V A V + K + T+ Sbjct: 224 LGNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483 >gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] Length = 480 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 197/495 (39%), Positives = 272/495 (54%), Gaps = 16/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L LI + S+ + ++ + D+R + G +F A G + +G FI Sbjct: 1 MRLGSLIEGLDAKPDAGASL------DVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ GA A+V + DN R+ + A+R + PE +AV Sbjct: 55 PAAVQAGATAVVA--------RPEARVEGAIHIASDNPRRLFAQLAARYFAPFPEVTVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + G S IG T S LTTP + +S L Sbjct: 107 TGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKR 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH +YF AKMRLF+E++ Sbjct: 167 EGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVA 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+++ADD +S +V++RA G RVLSVG QG+ + L Q + I VEGK+ Sbjct: 227 PQGAAVVWADDEWSDKVIQRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLDIEVEGKN 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G +Q NAL AAGL IA G D+ VLE L ++ V GR E G +Y Sbjct: 287 YKVNLPLIGAYQAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGRLERAVITKAGAPVY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L ++ +R T GR+I +FG GGDRD GKRP MGK+A DLAD IVTDDN Sbjct: 347 VDYAHTPDGLRAAIEALRPHTRGRLIALFGAGGDRDAGKRPQMGKVAADLADHVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRA ++ G PG E G R AI AI D++++AGKGHE I+ + Sbjct: 407 PRSEEPSAIRAAVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 465 Query: 480 KKMSVDCDIIREILG 494 D + RE G Sbjct: 466 VLPFDDVTVARECAG 480 >gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 495 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +F+A+ G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + +D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q + G +S +G TT S + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ ++ A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGKGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG + Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494 >gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 495 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +F+A+ G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + +D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q + G +S +G TT S + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ ++ A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGKGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG + Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494 >gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] Length = 491 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 QGV +E SSH L+ R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEQGVDSTVMEVSSHALNLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D E R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ ++ ++ L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483 >gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] Length = 486 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 153/504 (30%), Positives = 246/504 (48%), Gaps = 33/504 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK LQD++Y E I + P + V DSR+++ +++VA G + DGH F Sbjct: 1 MKTLQDILYGVSIEAIVGATTIP-------VKGVVFDSRNVKIDFVYVAQKGVQVDGHDF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I AI+ GA+ IV A + + V+N+ K L + AS Y + Sbjct: 54 ISHAISNGAKVIVCE------FIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++AS + + G + + + +N TTP I + K L Sbjct: 108 VGVTGTNGKTTIASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHA 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + GVTH +E SSHG+ Q+R++G+ G F+NL DH+DYH + Y + + F + Sbjct: 168 MVESGVTHCFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRD-IKKQFFD 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD +++ + + + + Sbjct: 227 SLPKTAFALTNVDDKNGTYMLQNTVAKKYTYAIKQHADFKAQILECQFSGMLL------K 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + L G F N L + + + S +L+ + +L V GRF+ + Sbjct: 281 IQSQEVWTSLIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTL-QTPNKV 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE +L+ I TI + I V GCGG+RDQ KRP+M K A++ +D I Sbjct: 340 TVVVDYAHTPDALENVLQTIATIRTRNETLITVIGCGGNRDQEKRPLMAKAAVNFSDKVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+EDP I ++++ G+P ++ R EAI A ++ + D++++AGKGH Sbjct: 400 FTSDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET + NGE+ D DI +EI Sbjct: 460 ETYQEI-NGERFPFSDMDIAKEIF 482 >gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] Length = 491 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 146/503 (29%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ V++ ++KL VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++ G + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] Length = 490 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 156/500 (31%), Positives = 225/500 (45%), Gaps = 23/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ L+ P ++ + DSR + G F+A+ G DG F+ Sbjct: 2 MTLQQLLPNT---------TLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAIA GA A++ + FS P + + + A+R YG+ N++ Sbjct: 53 SQAIAAGAVAVLAEAET----FSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+ F++ G +G Q TTP PI L L+ + Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARV 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V++E SSH LDQHRL + F+NL RDH+DYH +AY AK LF Sbjct: 169 LEAGADTVAMEVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTR- 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD + ++ + V G + V ++V G Sbjct: 228 -DGVKLAVINCDDPVAYSLVGCLADGVRCVTFGDQTGATVRCASVAFTAEGTNAELNVGG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F PL G F + N + AG+ G+ + + L + VPGR E V Sbjct: 287 ESFSVTLPLFGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQAGCPT- 345 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE L+ R +GR+ + GCGGDRD GKRP M +A AD + T Sbjct: 346 VIVDYAHTPDGLEKALQACRAHFAGRLFCIIGCGGDRDTGKRPQMAAVAERGADHVVFTS 405 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSEDP+KI E+ G+ R A+ ++ + DV+++AGKGHE Sbjct: 406 DNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKGHEDYQE 465 Query: 475 VTNGEKKMSVDCDIIREILG 494 V NG + S D D+ + Sbjct: 466 V-NGVRYPSDDRDLAHKAFN 484 >gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] Length = 477 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 146/504 (28%), Positives = 230/504 (45%), Gaps = 35/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59 MKL +LI + + +I ++SD+R + G IFV I G DGH Sbjct: 1 MKLYELIK----------DVAETSLPDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDA 50 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 Q + +G A+V L+ ++V +TR + S +G + Sbjct: 51 AQQMLDKGCAAVVCERDLGLER----------QIIVTDTRAAFPMLCSAWFGHPERELEL 100 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + ++++ G IG + I TTP P L + Sbjct: 101 IGVTGTNGKTTITTVIKKVLSGFGFKVGLIGTCQNEIGDKIIPTARTTPEPYDLFELFRK 160 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SS GL+Q R+ G AG FTNL +DH+D H T + Y+ AK LF+ Sbjct: 161 MADEGCKYTVMEVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKMLFDI 220 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 AII DD Y + + G + V + Sbjct: 221 ----CDTAIINTDDEYGRRYVTEIPCPYKTYSVNGKADF--RAEDVMLGTTGVKYVFCDG 274 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F +PG F V N+L +G ++ EK+ V GR E + T Sbjct: 275 KVKKNVSFNMPGLFNVSNSLAVIACMEVLGFTPCNTIKEFEKIQGVRGRAEIIPTGR-DF 333 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + DYAHT ++L +L I+ + G++ +FGCGG+RD+ KR M A + AD IVT Sbjct: 334 TVICDYAHTPDALINVLSAIKEGSKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVT 393 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR EDP+ I +++ G+ G ++ +R EAI AI+ K D++V+AGKGHE Sbjct: 394 SDNPRDEDPDDIINDVLKGLEGKDTPYVRMTDRREAIHWAIKNAEKDDIIVLAGKGHEDY 453 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ G K + +++ + L I Sbjct: 454 QILAGGVKIHFDEREVVADALKEI 477 >gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS185] gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS185] Length = 499 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 230/506 (45%), Gaps = 27/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ Q N+++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG--KHPE 115 +A+ GA A++V + + Q N + V + +S A++ Y Sbjct: 51 EKALDLGAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110 Query: 116 NI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170 + +TGT+GK+S + + Q+ G + +G D+ TT I L Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITL 170 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y AK Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230 Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LF + A A +K G+Q + K Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 T+ + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 SATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MGK A Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DN RSEDP +I +II G+ + + +RI AI+ + + DV+++AG Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVILLAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHET G + + + R++ Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494 >gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE15] gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli AA86] gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum SS9] gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Photobacterium profundum SS9] Length = 506 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 151/489 (30%), Positives = 232/489 (47%), Gaps = 15/489 (3%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S + +WRE + ++ DSR I+A +FVA+ G+ DG FIP AI GA A++ + Sbjct: 21 SDWQEKWREHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNI 80 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 + + I+ ++LS A+R Y + +LAVTGT+GK++++ + Q Sbjct: 81 AKHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140 Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G ++ +G T + TT + I + L L QG ++E SSHGL Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLV 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ ++ +A FTNL RDH+DYH Y +AK LF E ADD Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVIN--ADDDIGFT 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + +A V G+ L V ++ F PL G F Sbjct: 259 WLADLPHAVAVVTDKARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSF 318 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L+A +A+G ++ L V GR E + + VDYAHT ++LE Sbjct: 319 NVSNLLLALATLLALGHSIDKLIATAPHLTAVIGRMEVF-QSPDKPMVVVDYAHTPDALE 377 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ +R G++ +FGCGGDRD GKRP+M +I+ LAD I+TDDNPR+E P I + Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPAAIVS 437 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +++ G+ +R A AIE D++++AGKGHE ++ + D + Sbjct: 438 DMLQGLALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKGHEDYQVLADRTIHY-SDRE 496 Query: 488 IIREILGLI 496 ++ + G I Sbjct: 497 TVQALFGEI 505 >gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia montanensis] Length = 479 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 159/484 (32%), Positives = 253/484 (52%), Gaps = 23/484 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ K+ +S +S+ ++ +F AI G DG+ FI A+++GA ++ + Sbjct: 2 SHNLKQLFQQHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V + + L Y K P+N++AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTH 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG + LTT + K L+ G+ ++ EASSH Sbjct: 114 SLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V HN + ++VG +G + ++ Q + + ++++F P+ G FQ Sbjct: 234 IEFVKDYLHNHNIKFITVGKKGDLE-ITRINCSLKGQNINFTFNNREYNFNTPIIGSFQA 292 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A G V++ L ++ V GR E + I+VDYAHT ++LE Sbjct: 293 SNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348 Query: 373 LKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++ I ++ VVFGCGG+RD+ KR +MG++A AD I+TDDNPR+EDP+ IRA Sbjct: 349 LTELKNIKLHDSKLSVVFGCGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLIRA 408 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EII GI + E NR EAI+ I L + D+L+VAGKGHE I+ + +K D ++ Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467 Query: 489 IREI 492 +R+ Sbjct: 468 VRKC 471 >gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] Length = 491 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] Length = 496 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 163/503 (32%), Positives = 259/503 (51%), Gaps = 26/503 (5%) Query: 9 KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ E++ L I +Q + +I ++ DSR+++ ++FV I G +DGH +I +AI G Sbjct: 2 KNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++V + S ++ D+TR L+ ++ Y ++ VTGT+G Sbjct: 62 ATALLVEKEVE-------VDSEVTVIKTDDTRLGLAEVSAAFYDYPSRELKVVGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I +++G IG + +S D++ TTP + + K L+ + +GVTH Sbjct: 115 KTTNTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVTH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 V +E SSH LD +R+ I FTN+ +DH+D+H + Y AK +LF L Sbjct: 175 VVMEVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKT 234 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 AII DD +S E ++ A++ K + + + + + Sbjct: 235 AIINIDDPHSDEFLEAANSKVLTYGIEKDANL--KAKDITISPTGVEFGLESTIGEMELD 292 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G F VYN L A G +++G+D + LE++ + GRFE + ++ + VDYA Sbjct: 293 LNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEII-EEAQDFGVIVDYA 351 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SL IL+ GRIIVVFGCGGDRD+ KRPIMG++A++L D A+VT DNPRSE Sbjct: 352 HTPDSLRNILETAHDFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFAVVTSDNPRSE 411 Query: 424 DPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +P +I A+I GI +I +R EAI IE D++ + GKGHET Sbjct: 412 EPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVGKGHETYQ 471 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 + + D ++ R L I Sbjct: 472 TFKD-KTIPFDDREVARRSLAKI 493 >gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] Length = 486 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 143/497 (28%), Positives = 233/497 (46%), Gaps = 28/497 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ + + I ++ DSR I+A F+ I G DGH F Sbjct: 1 MNSKELLASIPYKQVKGPLPEH-------IEHLTIDSRDIKANSAFICIKGYTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA QGA I+ ++ N ++ V++T + L L A++ Y + +++ Sbjct: 54 QQAANQGATLIITEKPMTI--------DNATVVEVESTSRTLGLLAAKFYDYPSKLLHMI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SVA + + G S G + + TT + + ++ Sbjct: 106 GVTGTNGKTSVAGILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARA 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 + +H+++E SSHGL RL G++ FTNL DH+D+H T + Y +AK Sbjct: 166 RDEDCSHMTMEVSSHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQL 225 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L + AI+ ADD +SKE+ K + K + +H T++ Sbjct: 226 GQDLANQKQAILNADDPWSKELAKMTPHPVYTYGIQN--DAQFQAKNIQLMHTGTSFTLT 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +F L GEF V NAL + A G +L+ L K+ V GR + V + Sbjct: 284 CVEGEFPVTMKLLGEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEA- 342 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I++DYAHT +++E + ++ RII + G GG+RD+ KRPIM A +AD + Sbjct: 343 PISIFIDYAHTPDAIEKAIDAVQDFKKSRIIFLVGTGGNRDKTKRPIMAAKAS-IADYVV 401 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +T D+PR E + I ++ G+ F G+R +A+ A+E D++++AGKGHE Sbjct: 402 LTTDDPRDEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKGHEDY 461 Query: 473 HIVTNGEKKMSVDCDII 489 I+ N K D +I Sbjct: 462 QIIGN-TKYPHSDKEIA 477 >gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii Sb227] gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227] gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella flexneri CDC 796-83] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ + V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVPGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 352 PT-VVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae Sd197] gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197] gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] Length = 484 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 163/502 (32%), Positives = 249/502 (49%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ +S E +I +++DSR G +FV I G + DGH F Sbjct: 1 MKLQNLLRD--------VSYTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A A G+ A++ P ++V +TR +L + +G+ E ++ Sbjct: 53 ASAAAAGSPAVLALRDTGAP---------VPHILVKDTRLAYALCCANFFGRPAERLRMV 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + +++I + +G S IG + + LTTP P + L + Sbjct: 104 GVTGTNGKTTTTTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTI 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +E SSH L Q R+ G A FTNL +DH+D+H+T + Y AK + Sbjct: 164 ADEGCEFAVMEVSSHALAQERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEK----- 218 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L I D + R S Y + + ++ + + Sbjct: 219 LFSMCDLGIVNVDDDYAPEIIRTAKCKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNA 278 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 P+PG F VYN L AA +++GI VLE L ++ V GR E V T Sbjct: 279 LIGRVSVPIPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGRIEVVPTGR-NFT 337 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT ++LE ILK+IR GR++ +FGCGGDRD+ KRPIMG +A AD IVT Sbjct: 338 VIIDYAHTPDALEKILKSIRGFAKGRVVALFGCGGDRDKTKRPIMGMVAGRGADFCIVTS 397 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I +I+ G+ G ++ NR EAI A++ K D++++AGKGHE I Sbjct: 398 DNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKGHEDYQI 457 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + EK + +++ EIL + Sbjct: 458 IGR-EKHHFDEREVVAEILRCL 478 >gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 247/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +F+A+ G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + +D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q + G +S +G TT S + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ ++ A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGNGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG + Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494 >gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 150/493 (30%), Positives = 231/493 (46%), Gaps = 10/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P L + L +Q + +++ DSR +G +FVAI G++ DG +IPQAIAQG A+ Sbjct: 4 PNLSDLLGALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + P++ ++N LS A Y + ++ VTGT+GK++ Sbjct: 64 LAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G S +G TT S + + L L +QG T ++E Sbjct: 124 TQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFTAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247 SSHGL Q R+ + +A FTNL RDH+DYH Y AK LF E Sbjct: 184 VSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEKIINADD 243 Query: 248 -ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + L +QG+++ ++ + + + + PL Sbjct: 244 AVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGEGEIESPL 303 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L A +A+ V++ L V GR E ++R + VDYAHT Sbjct: 304 MGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRP-TVIVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ R +G++ +FGCGGDRD+GKRP+MG +A AD ++TDDNPRSE+P+ Sbjct: 363 DALEKALQAARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFADKVVITDDNPRSEEPQ 422 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ G+ + R EA+ + + D+++VAGKGHE IV Sbjct: 423 AIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKGHEDYQIVGTRRLDY- 481 Query: 484 VDCDIIREILGLI 496 D + +LG+I Sbjct: 482 SDRLTVARLLGVI 494 >gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] Length = 493 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 147/502 (29%), Positives = 234/502 (46%), Gaps = 31/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + +R+I+ + DSR ++ IFV I G DGH F+ Sbjct: 1 MKLTKLLERLTYQ-------CKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + IA+G+ IV S+ D +L+V NTR+ L+ ++ + E + Sbjct: 54 NEVIAKGSTVIVAEKEVSVPD-------GVTLLLVSNTREALAYLSAAYFDYPAEKLKTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V I +G+ + IG T+ TTP + + + + Sbjct: 107 GITGTKGKTTTTYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G T V +E SS GL HR+ G G FTN+ DHI + + + L Sbjct: 167 VEDGCTCVVMEVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGP---GEHGSFEEYMACKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K+ I D E + H + + + + + + Sbjct: 224 LFKQCKVGIANVDDKHMEQVLSGHTCTLETYGLSEKADL-RAVDIDLHSKLGNLMVLYKV 282 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K DF +PG+F VYN+L A +C I + + E L K+ V GR E V S+ Sbjct: 283 KGLCDFPVQVNIPGKFTVYNSLTAIAICRHFNISTERIKEVLTKVKV-KGRVEPV-EVSK 340 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH + SL+ +L +R R++ +FGCGG+R + +R MG+I+ +LAD I Sbjct: 341 KFTMMIDYAHNAMSLQSVLSTLREYEPKRLVCLFGCGGNRSKDRRFEMGEISSNLADYTI 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPR E+P+ I +I+ G+ +I +R EAIR +I + D++++AGKGHE Sbjct: 401 VTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 + G K D ++I+EI Sbjct: 461 NYQEI-RGVKHHMDDRELIQEI 481 >gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sp. D9] gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli W] gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli EC4100B] gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1180] gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11] gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] Length = 495 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] Length = 491 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I D + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + +D R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHET Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483 >gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 491 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + V A V + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHET Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 464 QIIG-KDXHHFDDREVAKEAI 483 >gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] Length = 471 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 158/474 (33%), Positives = 230/474 (48%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + D S P+ Sbjct: 1 MTLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + N + LS A + Y + + ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L QG T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH +Y AK LF + ADD + + + A + Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G++G ++ V N + L G F V N LVA +++ Sbjct: 239 GNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L L V GR E + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGLLDAGHAQAI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N D + +L ++ Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLEVV 470 >gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] Length = 491 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 143/501 (28%), Positives = 235/501 (46%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +F+ + G D H F Sbjct: 1 MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 S + + + V I + + T+ Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP+ I ++++G + +R EAI AI D++++AGKGHET Sbjct: 404 YTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 464 QIIG-KKVHHFDDREVAKEAI 483 >gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] Length = 495 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 491 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + +D R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHET Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483 >gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 487 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 241/499 (48%), Gaps = 26/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ+L+ E I + + I ++ DSR + +F+ I G K G L+I Sbjct: 1 MYLQELLKGIQVEKI-------IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI +GA AI+ +++ T + V+N+RK L+ ASR Y ++ Sbjct: 54 NEAIQRGAVAILSEKEIAIE--------GTTTIKVENSRKALAAVASRFYKFPTNTLKLV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+ V+ I ++ IG S + + TTP + L K L+ + Sbjct: 106 GVTGTNGKTSITYMVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q V +E SSH L+ R+D K G FTNL +H+D+H+ Y NAK +LF + Sbjct: 166 VEQKVDTCVMEVSSHALELGRVDHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKT 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + E +K + K+ Q+ + + Sbjct: 226 TLCNIINVDDIHGKMIAEELKEEQIPLITFGMNQQADVYATDLKINLKGVSFQLHMGQDS 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+F P F VYNA+ + +C +G+ + LE + VPGRFE V R Sbjct: 286 KEFHVKIPGL--FTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNS- 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT ++LE IL + R RII VFGCGGDRD+ KR IMG+I+ +D +I+T Sbjct: 343 VIIDYAHTPDALENILISTRKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P KI I GI +R AI A+++ ++D++++AGKGHE Sbjct: 403 DNPRTEEPLKIIEMIEDGIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKGHEKTQ 462 Query: 474 IVTNGEKKMSVDCDIIREI 492 ++ N E D ++ EI Sbjct: 463 VIGN-EVFYFDDREVALEI 480 >gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] Length = 495 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ + V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] Length = 476 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 148/476 (31%), Positives = 233/476 (48%), Gaps = 24/476 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I + DSR ++ +FVAI G+ +GH FI +AI QGA I+ I Sbjct: 10 VAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEK------LPNDIV 63 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + V N+++ L+ A+ Y + + + VTGT+GK+++A+ + + ++G Sbjct: 64 NGVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAGFKVG 123 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + + D TTP + + L+ ++ +GV + +E SSHG+DQHR G+ Sbjct: 124 LLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTTGLVF 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FTNL DH+DYH + Y + K R F+E LP + A+ DD + +++ Sbjct: 184 AGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDE-LPASAFALTNVDDKNGEVMLQNTKAKQ 242 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 Y + + + ++ D + L G F YN L Sbjct: 243 YTYGLKNYADYKAQILENQFTG------LLLKINDQEVWSRLIGSFNAYNILAIYAAAEL 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+++ L+ + +LH V GRF++ + VDYAHT ++L+ +L I I + Sbjct: 297 LGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTINAIRTKNE 356 Query: 385 --IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----- 437 I V GCGGDRD+ KRP MG IA L+ I T DNPR+ED + I EI G+ Sbjct: 357 ELITVVGCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIEEIEKGVEPQNFN 416 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + NR +AI+TA +M D++++AGKGHET V NG+K D I+ E L Sbjct: 417 KTVSISNRKQAIKTACQMAQANDIILIAGKGHETYQEV-NGQKHDFDDYKIVSEFL 471 >gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] Length = 487 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 143/500 (28%), Positives = 234/500 (46%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L++L+ + IN E +++ ++ DSR + G +FV + G DGH +I Sbjct: 1 MQLKELVKDLNIKEINGS-------LEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI G +A +V + + + D+TR L+ + +G + + Sbjct: 54 NDAIENGTKAFLVQKHVDVPE-------GITTIETDDTRFGLAAVSDAFFGHPSSKLNLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + +G + IG + I + TTP L + + Sbjct: 107 GITGTKGKTTTTYMVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E SS GL+ HR+ G FTN RDHI + A +L Sbjct: 167 IDNKVDSAVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKE--HATLEEYFNAKAKL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A+I D + +++ + A + V ++ Sbjct: 225 FKMCNKAVINIDSEHGRKMAELAEGKVLTYGLSSRSDIW--ASDVIKKTGHTFFKLNSPW 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L GEF +YNAL A G C I + ++ VPGR E V T+ Sbjct: 283 GSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVKKGLTKVTVPGRMESVKTDG-NYS 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAHT +SLE +LK ++ GR++ +FGCGGDRD+GKRP MG+I+ ++AD I+T Sbjct: 342 VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITS 401 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+PE+I +I GI +I+ +R +AI+ A+E D++++AGKGHET Sbjct: 402 DNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKGHETYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + + +++ E+L Sbjct: 462 QFAE-KTIHFDEREVVNELL 480 >gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] Length = 491 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSEDP I +++HG + +R EAI AI D++++AGKGHE Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D ++ +E + Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483 >gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter koseri ATCC BAA-895] gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 248/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + E++ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 EQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + R +A ++ G+++ +V + + Sbjct: 232 HHYGEAIVNADDEVGRRWLVRLPDAVAVSMEDHINPNCHGRWLKAVEVKYHDSGATIRFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+ + Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli WV_060327] Length = 495 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] Length = 471 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + +D + T P+ Sbjct: 1 MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + E + + VTGT+GK++ + Q Q G + +G Sbjct: 61 IYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +G T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH Y AK LF + AII ADD + + + +A + Sbjct: 181 TNLSRDHLDYHGDMANYEAAKWSLFAGHEVGQ--AIINADDEVGQRWLSKLPDAVAVTMQ 238 Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G G+++ V N V S D + L G F V N L+A +++ Sbjct: 239 DNLQLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G ++E +L V GR E + VDYAHT ++LE L+ R G++ Sbjct: 299 GYPLDKLVETGNQLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALEAARLHCQGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA AD +VTDDNPR+E+P+ I A+I+ G+ + Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDAGRALVI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI +QDV++VAGKGHE +V N D + +LG+I Sbjct: 418 HGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDY-SDRTTVARLLGVI 470 >gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 153/481 (31%), Positives = 236/481 (49%), Gaps = 25/481 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + +E ++ V SDSR I+AG++FVAIVG + DGH I ++I GA+ I+ + Sbjct: 6 EGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQT------LP 59 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 T+R + + V ++ K L S G+ + + + VTGT+GK++V + + ++ ++ G Sbjct: 60 VTLRPDVTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 I + I+ TTP I L L + S+G +V +E SSH +DQ R+ Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++ G FTNL RDH+DYH+T Y + K F+ LP + A+ DD +++ Sbjct: 180 GLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFDL-LPTGAFALANKDDKNGAFMLQNT 238 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + + F YN L G Sbjct: 239 KAHKKFYSLQSLADFKSRILESHFNGTLMTINDKELSTLLVGKFNA------YNLLAIYG 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379 I +G +S +L L L V GRFE + SRG + VDYAHT ++L +L I I Sbjct: 293 TAILLGQNSDEILVLLSVLRPVIGRFETL-NASRGFTVIVDYAHTPDALINVLNTINEIL 351 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G+II V GCGG+RD+GKR IM + A+ L+ I+T DNPR E+P I +++ G+ Sbjct: 352 ARKGKIITVIGCGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDIIEDMLAGLDD 411 Query: 439 F-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R EAIRTA + D++++AGKGHE + G K D ++ EI+ Sbjct: 412 IQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKGHEDYQEIK-GVKNHFNDKKVVMEII 470 Query: 494 G 494 Sbjct: 471 N 471 >gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] Length = 495 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 491 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 233/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + +I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +A +L Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + +D R+ A + + K + T+ Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A A Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHET Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ + D ++ +E + Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483 >gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] Length = 491 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 147/502 (29%), Positives = 230/502 (45%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ FP E+ +++ DSR I+ G +F+A+ G+K DG FI Sbjct: 1 MLLRELLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117 +A+AQGA A++V + + + + K +S A+ Y H I Sbjct: 50 DKALAQGATAVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGI 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK+S + Q+ + +G D+ TT I L + L Sbjct: 110 VGITGTNGKTSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +++GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y A + Sbjct: 170 FANKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENY--AAAKQMLF 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293 ++ DD + N ++ + + K V Q T+ Sbjct: 228 RFDSLRHGLLNLDDPIGGAWLAELKNVPAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATL 287 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D PL G F + N L A G+D + + L V GR E T Sbjct: 288 VWPEGEIDISSPLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTAD 347 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD Sbjct: 348 -NITLVVDYAHTPDAIEQALNALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRI 406 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DN RSEDP +I +II G+ + + +R+ AI+ + DV+++AGKGHE Sbjct: 407 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G + + + R++ Sbjct: 467 TYQE-AAGVRHDYDERALARQL 487 >gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 491 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D +I +E + Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483 >gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] Length = 551 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 147/478 (30%), Positives = 232/478 (48%), Gaps = 19/478 (3%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + N+V+ DSR + +FVA G G F+ +AI++GA +V S Sbjct: 24 GAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ-------- 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 P VV N R + + LYG ++ VTGT+GK++V+ + + +SG Sbjct: 76 VLPNCPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKSG 135 Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + +G A+ + LTTP +A + S+G TH+++E SSH LDQ R Sbjct: 136 YRTGLLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAA 195 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + L TN+ DH+DYH +Y AK R+ + + P + A+ + +D + + Sbjct: 196 ALPLDCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIAL-HINDPGAASLASLV 254 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + + + + + +G+ + G + NAL A Sbjct: 255 PAECRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAALA 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A + + E LE+ VPGR E I+VDYAHT ++L L ++R +T Sbjct: 315 AGLAWKVPFLSMAEALEEFRPVPGRMERCTWGE-PFDIFVDYAHTPDALSRALCSLRGLT 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 GR+I VFG GGDRD KRP++G+ A AD+AIVT DNPRSE+PEKI +I G+P Sbjct: 374 RGRLICVFGAGGDRDATKRPLLGRAASQ-ADVAIVTSDNPRSENPEKIIQQICDGVPAQQ 432 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R AI+ AIE D++++AGKGHE+ I+ D ++RE+L Sbjct: 433 VEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASH-LPFDDRRVVRELLE 489 >gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] Length = 480 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 188/500 (37%), Positives = 274/500 (54%), Gaps = 29/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DLI D + +I +++DSR ++ G++F A+ G DG +I Sbjct: 1 MRLSDLIPLD-------------GHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYI 47 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA +++ + + P+L DN R+ L++ A+R + P+ I+ V Sbjct: 48 DQA---------IAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGV 98 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVA FV Q+ G S+ +G + + R TTP P+ L + +S +++ Sbjct: 99 TGTNGKTSVARFVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAA 158 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+++E SSHGL QHR DG++ FTN+ +DH+DYH + +AYF AKMRL LLP Sbjct: 159 MGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLP 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+I D A ++ ++ A AG RVL+VG +G+ + L +T+SVE Sbjct: 219 ETGQAVITTDGAGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGP 278 Query: 300 FDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G+FQ NALVAAGL IA G + V+E + KL PGR + G S G + Sbjct: 279 AQSVALSLIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGM 338 Query: 359 ---YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +VDYAHT +++ L+ I+ G R++VV G GGDRD+ KRP+MG+ A AD+ I Sbjct: 339 ASAFVDYAHTPDAIATALRAIKPHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 VTDDNPRSEDP IR+++ G PG G R AIR E L DVL+V GKGHE Sbjct: 399 VTDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQT 458 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + D +G Sbjct: 459 IGH-VTYPFDDVSTTLAAMG 477 >gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVTAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 148/493 (30%), Positives = 229/493 (46%), Gaps = 10/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L L+ F + + E++ DSR AG +F+A+ G++ DG +IPQAIAQG AI Sbjct: 4 RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + ++ + P++ + + LS A Y + + + VTGT+GK++ Sbjct: 64 IAEAQGEAEEGEIRVVHGVPVIYLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +S +G + TT S + + L+ L ++ T ++E Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247 SSHGL Q R+ + A FTNL RDH+DYH + Y AK LF K Sbjct: 184 VSSHGLIQGRVAALNFDAAVFTNLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQIINADD 243 Query: 248 -ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + + +QG ++ V + + + F PL Sbjct: 244 DVGLKWLHRLPQACAVTMENRIPKNWQGSWLKATNVDYHDKGATIHFASSWGEGSFESPL 303 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L+A + + +L + L V GR E T + + VDYAHT Sbjct: 304 MGAFNVSNLLLAMATLLMMDYPLDKLLAATDFLMPVCGRMEVFSTEGKPT-VVVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L R G++ VFGCGGDRD+GKRP+MG A AD ++TDDNPRSE+P Sbjct: 363 DALEKALLAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEEPL 422 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ GI + R EA+ + I DV++VAGKGHE I+ + Sbjct: 423 DIINDIMAGILDSSRVLAIPGRPEAVTSTILQAQPDDVILVAGKGHEDYQIIGSRRLDY- 481 Query: 484 VDCDIIREILGLI 496 D + +LG++ Sbjct: 482 SDRLTVARLLGVV 494 >gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 Q T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TW10509] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella dysenteriae CDC 74-1112] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A +++ G+++ + V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] Length = 493 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ +NQ+ +I+ ++ DSR + G +FVAI G+ DG FI Sbjct: 2 MQLSELLLPWCE--LNQV---------VEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118 P AI QGA A++ S + + + TPI+ +D LS A R Y + ++ Sbjct: 51 PVAIKQGASAVLAQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFYHAEQRKMQLV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++++ + Q G + +G T + + TT SPI + + L+ L Sbjct: 111 GITGTNGKTTISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDL 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++E SSHGL Q R++ + A FTNL RDH+DYH Y AK LF Sbjct: 171 ENIGAKLTALEISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293 PK S ADD +K NA L+ G + V + Q+++ Sbjct: 231 SPKYSIIN--ADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISL 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + D PL G F N LVA +++G D + + KL V GR E ++ Sbjct: 289 NSDWGTADLSVPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELF-SSE 347 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 ++ VDYAHT ++L+ L+ +R G++ +FGCGGDRD GKRP+M IA AD+ Sbjct: 348 GNAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I++DDNPRSEDP I +++ G+ R +A + A+ +K D++++AGKGHE Sbjct: 408 ILSDDNPRSEDPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 ++ D + +++LGL Sbjct: 468 EYQVLATETIHY-SDRETAQKLLGL 491 >gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UTI89] gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli S88] gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli UTI89] gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli S88] gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IHE3034] gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] Length = 490 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 238/489 (48%), Gaps = 14/489 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + ER + E++ DSR + +FVAI G+ DG FIPQAIAQG A++ + Sbjct: 3 DLLAPWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133 +D P++ + + LS A R Y + E + + VTGT+GK++ + Sbjct: 63 EGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G + +G TT S + + L+ L +G + ++E SSH Sbjct: 123 AQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL QHR+ + A +FTNL RDH+DYH Y AK LF E + AII ADD Sbjct: 183 GLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQVGQ--AIINADDEV 240 Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + +++ +A + G G+++ KV +V S + + L G Sbjct: 241 GRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N LVA +++ + +L V GR E + + VDYAHT ++ Sbjct: 301 AFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP I Sbjct: 360 LEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ R +A+ + + D+++VAGKGHE I+ + D Sbjct: 420 VRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDY-SD 478 Query: 486 CDIIREILG 494 D + +LG Sbjct: 479 RDTVARLLG 487 >gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] Length = 504 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 140/503 (27%), Positives = 221/503 (43%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E+ E ++ ++ +DSR + G +FV I G DGH +I Sbjct: 17 MKLTQLLERLEYEVRQGSD-------EVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYI 69 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+GA A++V ++ VD+TR L+L ++ +G E + + Sbjct: 70 DDVAAKGAAAVIVERPVDA-------PKGLTVIRVDDTRYALALMSAAYFGYPAEKLKVI 122 Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I A TTP + + + + Sbjct: 123 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQM 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SS GL HR GI+ G FTNLG DHI + + + + Sbjct: 183 AEAGCDSVVMEVSSQGLMLHRTAGIQFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGI 239 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L + I D E + + + + ++ + Sbjct: 240 LFTQCNLGIANVDDRWYEDVFKNATCKVETFGFSEKADLRATDVQHISRPGYLGVKYQVS 299 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +FD +PG+F VYN+L A +C + + L+ + V GR E V + Sbjct: 300 GLMNFDVEIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTALK-VAKVKGRIEMVKVSD-D 357 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L +R RI+ VFGCGG+R + +R MG++A L+D ++ Sbjct: 358 FTLMIDYAHNAMSLESLLLTLRDYHPQRIVTVFGCGGNRSKTRRYEMGEVAGRLSDFTVI 417 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +II G+ +I +R EAI+ IE DV+++AGKGHET Sbjct: 418 TSDNPRFEEPQAIIDDIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGKGHET 477 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K + +IREIL Sbjct: 478 YQEIK-GVKHDMDERVLIREILE 499 >gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae B728a] gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv. syringae B728a] Length = 487 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 160/486 (32%), Positives = 233/486 (47%), Gaps = 14/486 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY + + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M + LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I N DV+V+AGKGHE + NG+++ D Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475 Query: 490 REILGL 495 L + Sbjct: 476 ASALAV 481 >gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 495 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+V + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] Length = 471 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 224/472 (47%), Gaps = 10/472 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +F+AI G++ DG +IPQAIAQG A++ + + P+ Sbjct: 1 MTLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + +++ LS A Y + + + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TT S + + L+ L +Q T ++E SSHGL Q R+ ++ A F Sbjct: 121 GNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAGCRV 267 TNL RDH+DYH ++Y AK LF K + + + + Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQIINADDAIGLKWLQRLPQACAVTMENK 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + +QG ++ +V + + DF PL G F V N LVA + + Sbjct: 241 IPQDWQGPWLKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMMDY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +L L V GR E + + VDYAHT ++LE L R G++ V Sbjct: 301 PLNKLLAATSSLSPVCGRMEVF-SAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FGCGGDRD+GKRP+MG A + AD ++TDDNPRSEDP I +I+ G+ + Sbjct: 360 FGCGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLDSSRALAIPG 419 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ I + DV+V+AGKGHE I+ + D + +LG+I Sbjct: 420 RPEAVTNTILQASPDDVIVIAGKGHEDYQIIGQRKLDY-SDRLTVARLLGVI 470 >gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] Length = 947 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 174/492 (35%), Positives = 261/492 (53%), Gaps = 18/492 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ K F + ++ + +S D+++I+ IF AI GNK DG+ FIP AI Sbjct: 2 LLGKYFHNI-------NKDYKNFYFSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAIN 54 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G++ IV ++++ + +N RK L+ A ++Y K P+N++AVTGT+G Sbjct: 55 KGSKIIVTEKKVK------SVQNGILYIHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNG 108 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184 KSS+A+F QI + + IG S + TT PI LAK LS L S + + Sbjct: 109 KSSIANFYFQILKLNNKKVASIGTLGVKSKNINLNLSNTTIDPIKLAKILSKLKSHKIEN 168 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V +EASSHGL Q+RLDG+K +G FTNL +DH+DYH+ + Y NAK+ LFE L+ K+ Sbjct: 169 VIMEASSHGLKQNRLDGLKFNSGIFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNL 228 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I K++ K N ++ ++ + + + Q I + + Sbjct: 229 ITDQLIPEFKKIKKITINKRLKLYALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINL 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G+ Q+ N L+A I +L + KL V GRFE +G ++ +DYAH Sbjct: 289 NLIGKIQLKNVLMAIIAAKNSNIGLNKILNKIYKLKPVEGRFEKIGKIKNHSKVILDYAH 348 Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 T ++L+ L N+R + +IIV+FGCGG+RDQ KR MGKIA +D I+T+DNPR E Sbjct: 349 TPDALKTCLLNLREQFPAKKIIVLFGCGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLE 408 Query: 424 DPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +P+KIR + IE +R AI AI LN D+L+VAGKGHE + + +K Sbjct: 409 NPQKIRRDIKKGIKKKKIIEISDRAMAITRAIHDLNSGDILLVAGKGHEKTQDIGS-KKI 467 Query: 482 MSVDCDIIREIL 493 D +I + Sbjct: 468 FFSDKKVILSAI 479 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 84/471 (17%), Positives = 160/471 (33%), Gaps = 38/471 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L ++ + + + +S+ + IF AI G K DG+ F+ Q+ Sbjct: 485 NLSNNLKINVVKESGKIKRLSPLISLKKARINSQEVTKNDIFFAIKGKKNDGNKFVAQSF 544 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 + A VV+ + + ++ + V NT KFL+ + NI+A+TG+ Sbjct: 545 KRKASLAVVNKIQNKLN-------HSRQIKVKNTLKFLTNVSKIFRKSIDTNIIAITGSC 597 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+++ + + S IS + +N+ P + + Sbjct: 598 GKTTLKELLGNTLNKISKVS--------ISPKSYNNKFGVPLSL-----FNINQKDEFGI 644 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + V G + I+ G TN+ H + + A + + Sbjct: 645 LEVGMDKKGEIDYLSKIIEPDVGVITNINYAHAKNFKNIKQIALA-KSEIIDNIRLYGFI 703 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ ADD++ K A +V+S G + I L + K ++ IS+ K F Sbjct: 704 VLNADDSFFKLHYNIAKKKNIKVISFGIKNHKADIKLINIKPFRKKFRINISLNNKRKYF 763 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-- 360 L + +YN L A + L + GR + +I + Sbjct: 764 LLSNDFQNNIYNILSALAVISIYKNIFKLDKNIFYDFKIPGGRGDHSVIKFNNKKINLID 823 Query: 361 -DYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIA----LDLADIA 413 Y SL+ +KN I + ++ G + R + +A D Sbjct: 824 QSYNSNPLSLKSAIKNYDKINLKKSNKYMLIGDMLELGSHSRRLHRSVAPIINKSNIDKV 883 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 V + + I +I N+ + I + LN D L++ Sbjct: 884 YV-----KGKMASIIFKDISK-AKKGRILLNKSQIIELIRKDLNNNDYLMI 928 >gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] Length = 529 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 162/519 (31%), Positives = 248/519 (47%), Gaps = 36/519 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ PE + + + +I + S ++ G +FVAI G+ DGH FI Sbjct: 1 MRLSELLLPVCPESVRSTAAARGVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 QA+A+GA A+V +D + V + R L+L ++ YG ++ Sbjct: 61 DQALARGAVAVVAEKEVDARDAVT--------VRVADARNALALLSAVFYGAPSARLVLV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A+ V+ I ++G IG + N LTTP L L + Sbjct: 113 GVTGTNGKTTTAALVEHILVKAGKQVGVIGTGNFRYVGRRFKNPLTTPESADLQHILRDM 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ GVTHV +E SSH L Q R+ G FTNL +DH+D+H + Y+ K RLF Sbjct: 173 ATAGVTHVVMEVSSHALAQQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGT 232 Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + ++ + + + R+ + + I+ K V + + TI Sbjct: 233 RSVGVREKHMVSVINCNDARGRGLFDTLPVPGRMGAGFAEACDIYPKGVTSSPDGLAGTI 292 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 F PL G + + N L AAG + +G++ A + E +E VPGR E V Sbjct: 293 VTPAGPIPFCSPLAGTYNLENILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVADRM 352 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G ++VDYAHT ++L+ +L +R I++GR+ VFGCGGDRD+ KRP MG IA +AD Sbjct: 353 -GRFVFVDYAHTPDALQNVLSALRKISAGRLFCVFGCGGDRDRAKRPKMGGIAATIADRV 411 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------------------GFIEKGNRIEAIRTAIE 454 +VT DNPRSEDPE I A+I+ G+ ++ + +R AIR A+ Sbjct: 412 VVTSDNPRSEDPEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAVS 471 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D +++AGKG E I + D L Sbjct: 472 AAAPGDTILIAGKGEENYQIFRDRTID-FDDRQEAAAAL 509 >gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] Length = 484 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 193/495 (38%), Positives = 276/495 (55%), Gaps = 12/495 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L LI + E+ +S + + + D+R + G +F A G + +G +I Sbjct: 1 MRLGSLIEELDAEVAKAVSA--AGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA AIV + N R+ + A+R + P+ +AV Sbjct: 59 TEAVRAGAIAIVA--------RPEAQVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +QI + G ++ IG T S LTTP + ++ L Sbjct: 111 TGTNGKTSTVELARQIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRR 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH + EASSHGLDQ+R +G+ ++AG+FTNL RDH+DYH +YF+AKMRLF+E++ Sbjct: 171 EGVTHAAFEASSHGLDQYRTEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVA 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+I+ADD++S++ + RA G RVLSVG QG+ + L Q + I EG Sbjct: 231 PDGSAVIWADDSWSEKAIARATKRGLRVLSVGVQGRALQLANRTPTQLGQTLEIEAEGTR 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G +Q NAL AAGL IA G D+A V+E L ++ V GR E + G +Y Sbjct: 291 YKVNLPLIGAYQAANALTAAGLVIATGGDAARVMELLGRVQPVRGRLERAVISQTGAPVY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L ++ +R T GR+I +FG GGDRD GKRP MGK+A DL+D IVTDDN Sbjct: 351 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLSDHVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRA ++ G P E G R +AI AI D++++AGKGHE I+ + Sbjct: 411 PRSEEPSAIRAAVLAGAPDAQEIGGRRDAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 469 Query: 480 KKMSVDCDIIREILG 494 D + RE G Sbjct: 470 VLPFDDVTVARECAG 484 >gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489] gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arsenophonus nasoniae] Length = 475 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 226/474 (47%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR + AG +F+A+ G+++DG +I QAIAQG AI+ + + + P+ Sbjct: 5 MTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPV 64 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + +++ LSL A Y + + VTGT+GK++ + Q + G S +G Sbjct: 65 IYINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMGTV 124 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TT S + + L L + T V++E SSHGL Q R+ I A F Sbjct: 125 GNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAAVF 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH Q Y AK LF + DD + +++ A + Sbjct: 185 TNLSRDHLDYHGDMQNYAAAKWLLFSTHKSDKQIIN--VDDETGLQWLEKLPQACAVSME 242 Query: 270 VGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +V + + PL G F V N ++A + + Sbjct: 243 NRIPTDWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLLMM 302 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G V++ + V GR E + R + VDYAHT ++LE L +R GR+ Sbjct: 303 GYPFEAVIKSSHAIQPVCGRMEVFTSPGRPT-VVVDYAHTPDALEKALSALRLHCRGRLW 361 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKR +MG +A ADI +VTDDNPRSE+P+ I +I+ G + Sbjct: 362 CVFGCGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDILSGFLDAGRAMPI 421 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R+EA+ +AI N DV+++AGKGHE I+ + D + +LG++ Sbjct: 422 VGRVEAVTSAIMQANADDVILIAGKGHEDYQIIGDRRLDY-SDRLTVARLLGVM 474 >gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli 042] gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 536] gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli 536] gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82] gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O83:H1 str. NRG 857C] gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] Length = 501 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 11 NLRDLLAPWVA-----------GLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AIV + D P++ + + LS A R Y + + + + Sbjct: 60 QAIAQGVAAIVAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIG 119 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q CQR G +S +G TT S + + LS L+ Sbjct: 120 VTGTNGKTTTTQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLA 179 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK LF Sbjct: 180 AQGATVAAMEVSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS--A 237 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294 A+I ADD + + + +A + G+++ V + S Sbjct: 238 HHYGQAVINADDEVGRRWLAKLPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFS 297 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A G +A+ A +LE +L V GR E + Sbjct: 298 SSWGDGEIESRLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNGRMEVF-SAPG 356 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA AD+ + Sbjct: 357 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVV 416 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+EDP I A+I+ G+ R EA+ AI + DV+++AGKGHE Sbjct: 417 VTDDNPRTEDPRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKGHED 476 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG + Sbjct: 477 YQIVGTRRLDY-SDRVTAARLLGAV 500 >gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Amoebophilus asiaticus 5a2] gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus 5a2] Length = 487 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 150/506 (29%), Positives = 242/506 (47%), Gaps = 35/506 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+L+ K + I + I + DSR + +F+A+ G++ DGH +I Sbjct: 4 LQELLNKVSVQQI-------IGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIAD 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AIA G++AI+ + + ++ + V N + L AS Y ++AV Sbjct: 57 AIALGSKAIICEK------YPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+S + ++ ++ G S + + I+ A + LTTP+ I + KAL+ + + Sbjct: 111 TGTSGKTSTVHLLYRLFRQLGYSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVT 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +EASSH + Q+RL G++L F N+ DH+DYH T AY AK +LF+E L Sbjct: 171 AGCQFCFMEASSHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDE-LT 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + DD K +++ + + + + Sbjct: 230 ANAFVLYNIDDKRGKIMIQNTRATTYSMAIQRPADFTAQVLANTWQG------LELRIGG 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F L G F N L A +G S +L L + + GRF+ + + Sbjct: 284 QNVWFQLLGTFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQ-HIHTPKKPDVI 342 Query: 360 VDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +DYAH +LE IL +I+ I G+II + GCGG+RD KRP+M +IA L+D I Sbjct: 343 IDYAHKPEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLSDQLI 402 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR EDP+ I E+ G+ I +R EAI+ A +M D++++AGKGH Sbjct: 403 LTSDNPRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKGH 462 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E + G K D +I+ +++ + Sbjct: 463 ENYQEIA-GIKYPLSDEEIVSKLMAV 487 >gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UMN026] gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli UMN026] gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G + +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|71082737|ref|YP_265456.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Candidatus Pelagibacter ubique HTCC1062] gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1062] Length = 948 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 165/483 (34%), Positives = 244/483 (50%), Gaps = 10/483 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + N L +++ + +S +S + +IF AI G K DG FI AI +GA I+ Sbjct: 3 IGNFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIIS 62 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + I++ L N RK LS + + P+N++AVTGT+GKSS+A F Sbjct: 63 EQKFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFY 116 Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q+ IG + + + TT PI L+K L+ L Q + +V +EASSH Sbjct: 117 FQLLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSH 176 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q+RLDG+K FTNL DH+DYH+T Y +K+ LFE+LL I + Sbjct: 177 GLKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPE 236 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K + + + N + ++ I + +KQ V I K + L G+ Q+ Sbjct: 237 YKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLKINLIGKIQL 296 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N +A + +++ ++ V GRFE +GT ++ +DYAHT ++L+ Sbjct: 297 KNLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTC 356 Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L N++ + RI +VFGCGG+RD+ KRPIMGKIA D +TDDNPR E+P+KIR Sbjct: 357 LTNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLA 416 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I I E +R +AI AI L D+LV+AGKGHE N K S +I+ Sbjct: 417 IKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEIL 476 Query: 490 REI 492 + I Sbjct: 477 KNI 479 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 139/384 (36%), Gaps = 29/384 (7%) Query: 2 KLQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 KL++ L ++ ++S P KI S +S+ I+ IF AI GN +DG+L+ Sbjct: 480 KLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLY 539 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + +A GA ++ ++ + +VVD+T + L+ +S+L I++ Sbjct: 540 VNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKIIS 589 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+ GK+S+ + + + + S + +N+ P + + + Sbjct: 590 ITGSCGKTSLKELLGKTLSKISNVT--------YSPKSFNNKFGVPLSL-----FNLKKN 636 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + G + IK G TN+ HI + AK + + Sbjct: 637 DEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINNIKT 696 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D Y+ + I+L+K+ +K ++ ++V K Sbjct: 697 NGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKERSKYKIFVNVNKK 756 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F L E + N L + L + GR + + + I Sbjct: 757 QIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEMTKGRGDIIKVKLKKKSI 816 Query: 359 YV---DYAHTSNSLEMILKNIRTI 379 Y+ Y SL+ +KN + Sbjct: 817 YIVDESYNSNPLSLKSAIKNFDEL 840 >gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella frigidimarina NCIMB 400] gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella frigidimarina NCIMB 400] Length = 496 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 151/502 (30%), Positives = 235/502 (46%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ F + +N ++ DSR ++ G +FVA+ G+K DG FI Sbjct: 1 MLLNDLLAPWFHYSGRES-----------VNGLTLDSRDVERGGLFVALPGHKVDGRAFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLY--GKHPENI 117 PQAI GA AI++ + + ++ P++ + LS A++ Y ++ Sbjct: 50 PQAINAGATAILIHTDNPDEHGIVDRLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK+SV+ + QI G + +G D+ TT I + + LS Sbjct: 110 IGITGTNGKTSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSE 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +++G ++E SSHGL Q R++ FTNL RDH+DYH +Y AK RLF+ Sbjct: 170 FAAEGAELCAMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFKF 229 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295 K I +K + + A + G + + T+ Sbjct: 230 PSIKHGVINIDDA-VGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAGVTATLHFV 288 Query: 296 -----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + PL G F + N + A + G A +L L L V GR E Sbjct: 289 EIDSEKSVSVQLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERF- 347 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 ++ + VDYAHT +++E LK +R G + VFGCGGDRD+GKRP+M + A A Sbjct: 348 SSVNNATLVVDYAHTPDAIEQALKALRLHCKGTLWCVFGCGGDRDKGKRPLMAQAAERYA 407 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 D ++T DN RSEDP+ I +I+ GI + + +RIEAI + + D++++AGK Sbjct: 408 DKVMITSDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGK 467 Query: 468 GHETVHIVTNGEKKMSVDCDII 489 GHET V GE+ + + Sbjct: 468 GHETYQEVA-GERIDYDERALA 488 >gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis YPIII] gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis YPIII] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + + + + ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI Sbjct: 4 RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + A + G+ G ++ KV N + + + Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA + G A +L L V GR E + VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+ Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILG 494 D + +LG Sbjct: 481 Y-SDRVTVARLLG 492 >gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 169/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + E++ DSR +G +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------GAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI1] gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 55989] gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli 55989] gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI1] gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120] gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167] gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] Length = 495 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 495 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QGVT ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGVTFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium loti MAFF303099] gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mesorhizobium loti MAFF303099] Length = 484 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 229/495 (46%), Positives = 314/495 (63%), Gaps = 16/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL L + + ++ +SSDSR ++ G +F A+ G K DG + Sbjct: 1 MKLRDL--------AGVLPVEGTASADLEVTGISSDSRQVKPGVVFFALAGTKADGAAYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA A+V + S+ P+L VD+ R L+L A+R +GK P ++AV Sbjct: 53 ADAARRGALAVVAGKSNSVAGLP------VPVLTVDDPRLALALSAARYFGKQPRTMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +++G ++ IG T ++ + LTTP P+ L + L L+ Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRELAD 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVT+ S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ LLP Sbjct: 167 AGVTYASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S ++ A AG VL+VG G F+ LK+V ++Q+ + EG Sbjct: 227 KGAPAVIFADDPWSAPTIQAAQAAGLNVLTVGRHGDFLTLKRVEHERHRQRAEVEAEGVL 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQ+ NALV+AGL I+ G A L LEKL PGR + VGT G +Y Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGAPVY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE + + E Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKGHEEGQTIGS-E 465 Query: 480 KKMSVDCDIIREILG 494 D + +R L Sbjct: 466 TLHFSDHEEVRAALR 480 >gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] Length = 497 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 160/499 (32%), Positives = 236/499 (47%), Gaps = 14/499 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ +++ + I + +DSR Q G +F+ + G + DG F Sbjct: 1 MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AIA V+ + +L + +++ D A+ Y + + ++ Sbjct: 57 PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ V+ + + +G + +++ + TTP L L+ Sbjct: 116 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 175 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH LDQ R++G FTNL +DH+DYH T +AYF AK RLF Sbjct: 176 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 235 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I ADDAY + ++ C SV F + + TI Sbjct: 236 -YLRGKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F PL G+F + N L A +G+ +L + VPGR E V Sbjct: 294 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 353 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R G +I VFGCGGDRD+ KRP+MG+IA LAD I+T Sbjct: 354 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 413 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP +I A+I+ GIP + + +R AIR AI D +++AGKGHE I Sbjct: 414 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 473 Query: 475 VTNGEKKMSVDCDIIREIL 493 + K D + R L Sbjct: 474 LGT-TKIHFDDREQARLAL 491 >gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] Length = 482 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 222/477 (46%), Gaps = 21/477 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + +DSR ++ G +FV + G D H F + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 I + P+++V NT + L++ A YG+ + + +TGT+GK++ + + +I + G Sbjct: 61 IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + I + + TTP + L + S + QGV +E SSH LD R+ G Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258 FTNL +DH+DYH+T + Y +A +L + D E Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R+ A + + + K + T+ + + L G+F VYN L A Sbjct: 241 RSTAATVVTYGIDTRSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G+ ++ +++L VPGRFE V + + VDYAHT +SLE +LK + Sbjct: 300 TAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP I +++ G Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAI AI + D++++AGKGHET I+ E D ++ +E + Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474 >gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia sp. 4_1_40B] gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli H736] gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli ETEC H10407] gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520] gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482] gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii B253] gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Escherichia coli UMNK88] Length = 495 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] Length = 483 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 156/502 (31%), Positives = 238/502 (47%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + ++++ +DSR ++ G +FVA G DG L+I Sbjct: 1 MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 + + V+ Y + I + P + + + L A R + + + Sbjct: 51 ----EKAVASGAVAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106 Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175 VTGT+GK+++A + Q G S IG + TTP + L + + Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +G+ V +E SSH L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE Sbjct: 167 QYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + AII DD + + +V +Q + + ++ + Sbjct: 227 RAELQW--AIINQDDDFQDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEVKS 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+F +YN+L +A G + V++ + +L PGR E V + Sbjct: 285 PWGHQLLKIKALGKFNIYNSLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEIVAQSPY- 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++ Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDPE I EI GIP + NR EAI A+ D++++AGKGHE+ Sbjct: 402 TSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + N K + D +++R ++ Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482 >gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ATCC 8739] gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC 8739] gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] Length = 495 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] Length = 502 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 160/499 (32%), Positives = 236/499 (47%), Gaps = 14/499 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ +++ + I + +DSR Q G +F+ + G + DG F Sbjct: 6 MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 61 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P+AIA V+ + +L + +++ D A+ Y + + ++ Sbjct: 62 PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 120 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ V+ + + +G + +++ + TTP L L+ Sbjct: 121 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 180 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH LDQ R++G FTNL +DH+DYH T +AYF AK RLF Sbjct: 181 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 240 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I ADDAY + ++ C SV F + + TI Sbjct: 241 -YLRGKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 298 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F F PL G+F + N L A +G+ +L + VPGR E V Sbjct: 299 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 358 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R G +I VFGCGGDRD+ KRP+MG+IA LAD I+T Sbjct: 359 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 418 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP +I A+I+ GIP + + +R AIR AI D +++AGKGHE I Sbjct: 419 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 478 Query: 475 VTNGEKKMSVDCDIIREIL 493 + K D + R L Sbjct: 479 LGT-TKIHFDDREQARLAL 496 >gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] Length = 495 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] Length = 514 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 152/496 (30%), Positives = 238/496 (47%), Gaps = 20/496 (4%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + L++ ++ +R I V +DSR + AG +F+A+ G + +G F QAI QG Sbjct: 9 AQTLKALLHGIAEVSA-AADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQG 67 Query: 68 AEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTS 124 A A++ + + ++ +L + + + +S ++R G N+ VTGT Sbjct: 68 AVAVLSEQSIEEPSLLESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTD 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+SVA F+ Q +G + + + TTP + L + S QG+ Sbjct: 128 GKTSVAHFLAQALTALNPPVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIR 187 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV++E SSHGLDQ R++G+ TNLGRDH+DYH++ Y +AK +LF Sbjct: 188 HVAMEVSSHGLDQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLF---YKSGLK 244 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVE 296 A + D ++ V G+ G + + + + +S Sbjct: 245 ASVLNCDDDFGCMLALELEERLPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSG 304 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + L G F N L +A+G+ +E + +L VPGR E G Sbjct: 305 GQRYTVDVALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRME-CLKLPNGA 363 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT +LE L ++R + GR+ VFGCGGDRD+GKRP+MG+ A +D +T Sbjct: 364 VAVVDYAHTPQALEQTLSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAAERFSDALWLT 423 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DDNPRSE PE I +I G+ +R AI+ A+E DV+++AGKGHE+ Sbjct: 424 DDNPRSEKPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGKGHESEQ 483 Query: 474 IVTNGEKKMSVDCDII 489 +V E D +++ Sbjct: 484 VVG-QEVIAFNDSEVV 498 >gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ LI + + P + + ++ D+R +Q G +F+A+VG DGH + Sbjct: 1 MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI +GA+ IV S + N P++ V+NT + +++ A YG + + + Sbjct: 56 DQAIEKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + ++ IG I TTP I + L+ + Sbjct: 107 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L Sbjct: 167 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 226 Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A++ DD +E + A + I+ + V + + Sbjct: 227 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 284 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +SV G L G+F VYN L A A GI +++ LEK+ V GRF+ V Sbjct: 285 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 343 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ + Sbjct: 344 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 403 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I +++ G+P +R AI AIE DV+++AGKGH Sbjct: 404 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 463 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ K D + + L L Sbjct: 464 EDYQIIGR-TKHHFDDSEEAAKALAL 488 >gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter heparinus DSM 2366] gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM 2366] Length = 485 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 150/506 (29%), Positives = 244/506 (48%), Gaps = 32/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQD++Y + +Q+ + RK++ + DSR + F AI G DGH +I Sbjct: 1 MQLQDILYGV--TITDQIGVT-----NRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 ++ GA ++ A I + + V N+ L A+ YG E + Sbjct: 54 AATVSAGAGVVICE------VLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLT 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++A+ + ++ + G I + I+ TTP P+ L L + Sbjct: 108 GITGTNGKTTIATLLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH + QHR++G+ G F+N+ DH+D+H+T Y AK F + Sbjct: 168 VDAGCDYCFMEVSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKK-AFFDA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP + A+ DD +++ A + + + ++ Sbjct: 227 LPASAFALTNLDDKNGMVMLQNTRAAKKTYALKQLADFKAKVIENSFKG------LHLDI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D D F L G F YN L G + +G + VL L L GRF+ T+S+ Sbjct: 281 DDADVFFKLVGSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFD-YITSSQHII 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++++ +L I+ I G ++I + GCGGDRD+ KRPIM ++A D +D I+ Sbjct: 340 GIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPIMAQVACDWSDKVIL 399 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+E+P+ I E+ G+ + +R EAI+TA + D++++AGKGHE Sbjct: 400 TSDNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496 + NG + D +I+ E L LI Sbjct: 460 KYQEI-NGVRYHFDDKEILTEQLNLI 484 >gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 491 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D +I +E + Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483 >gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI39] gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI39] Length = 495 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dyadobacter fermentans DSM 18053] gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans DSM 18053] Length = 491 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 142/498 (28%), Positives = 231/498 (46%), Gaps = 28/498 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ E+ + + + + + DSR + G +FVA+ G + DGH FI A Sbjct: 6 ILSSLLGEVKGAI---IHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAAD 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 GA AI+ + +R + + V+++ + A+ YG + + + VTGT Sbjct: 63 LGAVAILCE------ELPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGT 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+SVA+F+ Q+ + G S + + I + TTP + L L+ ++++ Sbjct: 117 NGKTSVATFLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNC 176 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +HV +E SSH + QHR+ G+ G FTN+ DH+D+H+T Y AK F + LPK + Sbjct: 177 SHVFMEVSSHSVAQHRITGLHFAGGIFTNITHDHLDFHKTFDNYIKAKK-GFFDALPKSA 235 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ DD +++ + + ++ + Sbjct: 236 FALVNIDDRRGTVMVQNTKARVETYSLQTLATFKGKIISDTLAG------MHMDINSQEV 289 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 F + G F YN L G + +G VL L L PGRFE + VDY Sbjct: 290 WFRVIGRFNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADL-IVGIVDY 348 Query: 363 AHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 AHT ++LE +L+ I + +G + V GCGG+RD KRP M +IA ++ I+T DNP Sbjct: 349 AHTPDALENVLETITHLRNGNEQVVTVVGCGGNRDAEKRPKMAEIACRYSNRVILTSDNP 408 Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R EDP I ++ G+P +R EAI A D++++AGKGHE V Sbjct: 409 RFEDPMDILDQMRKGVPPLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKGHENYQDV 468 Query: 476 TNGEKKMSVDCDIIREIL 493 G K D +++ E+ Sbjct: 469 K-GVKHHFDDKEVLMEVF 485 >gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa] Length = 777 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 151/521 (28%), Positives = 256/521 (49%), Gaps = 39/521 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + E +I + DSR + AG +FV VG K DGHL++ Sbjct: 244 MSLAELLDES-----KVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYL 298 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A +GA A+V S +++ +++V++T L A+ Y +N+ + Sbjct: 299 SEADKRGAVAVVASKEVDIEETLGCKA----LVIVEDTNAVLPALAAAFYKFPSKNMAVI 354 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ A+ V+ + + GL + + + + T P I + ++ Sbjct: 355 GITGTNGKTTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAK 414 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G V +EA+S GL R D + FTNL RDH+D+H T++ Y NAK +LF Sbjct: 415 MLHNGTEAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFAR 474 Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ E + D + + + ++ + +H K + QV ++ Sbjct: 475 MVDPERHRKVVNVDDPNAPFFIAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVN 534 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G+ +YN L A + IA+G ++ +E++ VPGR E + + Sbjct: 535 TPHGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELI-DEEQ 593 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++L +L ++R + RII V GCGG+RD+GKRPIM KIA D +D+ I Sbjct: 594 AFGVIVDYAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTI 653 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------------GN-RIEAIRTA 452 +T DNPR EDP I +++ G+ +++ + R A+R A Sbjct: 654 LTSDNPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCA 713 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + M + D++VVAGKGHET I + +K+ D + RE L Sbjct: 714 VAMGEEGDMVVVAGKGHETYQIEGD-KKEFFDDREECREAL 753 >gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] Length = 489 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 199/484 (41%), Positives = 276/484 (57%), Gaps = 3/484 (0%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + P RKI +++DSR +Q G++F A G DG F P A A + Sbjct: 4 EYLAAGLTLPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAA-GAIAI 62 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + + + + A + ++ R+ + A+R YG P+ I+AVTGT+GK+SVA F Sbjct: 63 LCAEDAAAEVRALVPETVAVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHF 122 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +QI Q +G + +G I + LTTP P+ L K L+ L +GV H ++EASS Sbjct: 123 ARQIFQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASS 182 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ+RLDG++L A +FTNLGRDH+DYH T + Y NAK+RLF ELLP ++ + Sbjct: 183 HGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEK 242 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 Y+ VM A G V +VG G+ + L + + Q++TI ++ PL G FQ Sbjct: 243 YADRVMAVAQERGLPVFTVGETGRNLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQ 302 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NAL+AAGL I+ GID+ L LE L PGR E G GG I+VDYAH ++L+ Sbjct: 303 VSNALIAAGLAISAGIDTGTALRALENLKGAPGRLELAGRTPAGGLIFVDYAHKPDALDN 362 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L ++ G++ VV G GGDRD GKR +MG++A AD+ IVTDDNPRSEDP IR Sbjct: 363 ALVALKPFARGKLSVVIGAGGDRDPGKRELMGEVAARRADLVIVTDDNPRSEDPAAIRKA 422 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 ++ G PG IE G+R EAI + L D+L VAGKGHET IV + D + ++ Sbjct: 423 VMSGAPGAIEIGDRYEAIAEGVRRLKDGDILCVAGKGHETGQIVGD-TVIPFSDHEAVKR 481 Query: 492 ILGL 495 + L Sbjct: 482 AISL 485 >gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 495 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] Length = 493 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 149/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ E++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPY-----------AGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117 +A+AQGA A++V + + + + +S A+ Y I Sbjct: 51 DKALAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK+S + Q+ + +G D+ TT I L + L Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y AK LF Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRF 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293 + DD + N ++ + + K Q T+ Sbjct: 231 DSLLHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATL 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D PL G F + N L A G+D + + L V GR E T Sbjct: 289 VWPEGEVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTAD 348 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DN RSEDP +I +II G+ + + +R+ AI+ + DV+++AGKGHE Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G + + + R++ Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488 >gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] Length = 487 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 147/502 (29%), Positives = 235/502 (46%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E++ + ++ E+ +DSR + G +FV I G DGH ++ Sbjct: 1 MKLTQLLERLEYEVVQGDD-------QIEVTELINDSRKVTEGSVFVCISGAVSDGHAYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 Q +GA A++V + ++ V+NTR L+L ++ +G E ++ Sbjct: 54 QQVAEKGAAAVIVEKDVEAPE-------GLTVIKVENTRYALALTSAAYFGYPAEKLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + G+ IG + I + TTP + K S + Sbjct: 107 GITGTKGKTTTTYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SS GL R GI G FTNLG DHI + FN L Sbjct: 167 VEEGCECVVMEVSSQGLKLDRTAGIPFEIGIFTNLGEDHIG--PNEHKDFNEYKYCKSLL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296 + I DD + +++ K A +K + Sbjct: 225 FKQCKIGIGNVDDKWFEDIFKDATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 DFD +PG+F VYN+L A +C G+ + + L+ + V GR E + + Sbjct: 285 LMDFDVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKALK-VARVKGRIEMIKVSD-DF 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + +LE +L +R RI+ VFGCGG+R + +R MG+++ L+D I+T Sbjct: 343 TLMIDYAHNAMALESLLDTLRDYHPERIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I+ G+ +I +R EAI+ AIE DV+++AGKGHET Sbjct: 403 SDNPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + G K + +I+E+L Sbjct: 463 QEIK-GVKHDMDERVLIKEVLE 483 >gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase MurE [Pantoea ananatis AJ13355] Length = 471 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 158/472 (33%), Positives = 231/472 (48%), Gaps = 14/472 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVAI G++ DG FIPQAIAQG A++ + D P+ Sbjct: 1 MTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + + ++ VTGT+GK++ + Q G +S +G Sbjct: 61 IYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTV 120 Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L L +G + ++E SSHGL QHR+ + A F Sbjct: 121 GNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH Q Y +AK LF E + AII ADD + + +A + Sbjct: 181 TNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLANLPDAVAVTME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G G+++ V N + + + L G F V N L+A +A+ Sbjct: 239 NNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G +L +L V GR E + + + VDYAHT ++LE L+ R G++ Sbjct: 299 GYALDDLLRAAARLQPVNGRMEVF-SATGKPTVVVDYAHTPDALEKALEAARLHCKGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 +FGCGGDRD+GKRP+MG IA ADI +VTDDNPRSEDP+ I +I+ G+ Sbjct: 358 CLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLDPGRARVV 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +A+ + I D+++VAGKGHE I+ N D + +LG Sbjct: 418 AGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGNQRLDY-SDRATVATLLG 468 >gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 491 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + + + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 GV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +E A++ DDA + E M+ K + T Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + L G+F VYN L A + G+ +++ +++L VPGRFE V Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI T DNPRSE+P I +++HG + +R EAI AI +D++++AGKGHE Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T I+ + D +I +E + Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483 >gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosynechococcus elongatus BP-1] gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermosynechococcus elongatus BP-1] Length = 497 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 238/500 (47%), Gaps = 21/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ F +++ + +S + G +F+ + G + +G F Sbjct: 1 MNLRELLT-----AAAITPGFEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+A GA A VVS ++ A ++VV + + A+ Y +++ L Sbjct: 56 PSALAAGAIAAVVSPQAKPREGEA------CVIVVPDIERACGRLAAAFYNYPSQHLSLL 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VTGT+GK++ V+ + R G + +G + + TTP + L + L+ Sbjct: 110 GVTGTNGKTTTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAA 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SSH L Q R+ G + +FTNL +DH+DYH+ + YF AK +LF Sbjct: 170 VDAGCRFGVMEVSSHALAQDRVWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTAD 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AI+ DD + + + ++ + F + + N + Sbjct: 230 -YLKGRAILNGDDPFGQRLAQQLPRDRYWTYGLSKDADF-RAENLNYRSNGVTGAVHTPL 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356 PL G+F V N L A + A+G+ +L L VPGR E V + Sbjct: 288 GSGTLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDI 347 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +L+ R G++I VFGCGGDRD+ KRP MG IA LAD +VT Sbjct: 348 TVVVDYAHTPDSLENLLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVT 407 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P++I +I+ GIP I +G+R +AI AI D +++AGKGHE Sbjct: 408 SDNPRTENPQRILDDILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDYQ 467 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R L Sbjct: 468 ILGT-EKVHFDDREEARNAL 486 >gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894] Length = 471 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 170/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + E + + VTGT+GK++ + Q CQR G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + LS L++QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH + Y AK LF A+I ADD + + + +A + Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLFS--AHHYGQAVINADDEVGRRWLAKLPDAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G G+++ V + S D + L G F V N L+A G +A+ Sbjct: 239 NNINPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +LE +L V GR E + + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLAALLESAPRLQPVNGRMEVF-SAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA AD+ +VTDDNPR+EDP+ I A+I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADILTGMLDAGRARVV 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI + DV+++AGKGHE IV D +LG + Sbjct: 418 EGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIVGTRRLDY-SDRVTAARLLGAV 470 >gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHR 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + + + +A +++ G+++ +V + + S Sbjct: 234 CGQ--AIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 166/505 (32%), Positives = 247/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E+ DSR +G +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + ++ L+ Sbjct: 114 VTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK LF Sbjct: 174 GQGATFAAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + + Sbjct: 232 HHYGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L E+L V GR E + Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D +LG++ Sbjct: 471 YQIVGNRRLDY-SDRVTAARLLGVV 494 >gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] Length = 948 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 166/483 (34%), Positives = 244/483 (50%), Gaps = 10/483 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + N L +++ + +S +S + +IF AI G K DG FI AI +GA I+ Sbjct: 3 IGNFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIIS 62 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + I++ L N RK LS + + P+N++AVTGT+GKSS+A F Sbjct: 63 EQKFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFY 116 Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q+ IG + + + TT PI L+K L+ L Q + +V +EASSH Sbjct: 117 FQLLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSH 176 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q+RLDG+K FTNL DH+DYH+T Y +K+ LFE+LL I + Sbjct: 177 GLKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPE 236 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K + + + N + ++ I + +KQ V I K + L G+ Q+ Sbjct: 237 YKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLQINLIGKIQL 296 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N +A + +++ K+ V GRFE +GT ++ +DYAHT ++L+ Sbjct: 297 KNLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTC 356 Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L N++ + RI +VFGCGG+RD+ KRPIMGKIA D +TDDNPR E+P+KIR Sbjct: 357 LTNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLA 416 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I I E +R +AI AI L D+LV+AGKGHE N K S +I+ Sbjct: 417 IKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEIL 476 Query: 490 REI 492 + I Sbjct: 477 KNI 479 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 138/384 (35%), Gaps = 29/384 (7%) Query: 2 KLQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 KL++ L ++ ++S P KI S +S+ I+ IF AI GN +DG+L+ Sbjct: 480 KLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLY 539 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + +A GA ++ ++ + +VVD+T + L+ +S+L I++ Sbjct: 540 VNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKIIS 589 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+ GK+S+ + + + + S + +N+ P + + + Sbjct: 590 ITGSCGKTSLKELLGKTLSKISNVT--------YSPKSFNNKFGVPLSL-----FNLKKN 636 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + G + IK G TN+ HI + AK + + Sbjct: 637 DEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINNIKT 696 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D Y+ + I+L+K+ +K ++ ++V K Sbjct: 697 NGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKEKSKYKIFVNVNKK 756 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F L E + N L + L + GR + + I Sbjct: 757 QIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEIAKGRGDIIKVKLNKKSI 816 Query: 359 YV---DYAHTSNSLEMILKNIRTI 379 Y+ Y SL+ +KN + Sbjct: 817 YIVDESYNSNPLSLKSAIKNFDEL 840 >gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 5216-82] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VF CGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] Length = 485 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 249/500 (49%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E+++ + I ++S DSR ++ +F+ I GN DGH +I Sbjct: 1 MELLKILKDV--EILSVNGQV-----DIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA AI++ S + + V+N ++ +++ + + I + Sbjct: 54 DDAIQKGAIAILIDKKISYK-------KGITYIRVNNVKESMAIIGKNFFQNPCQKINLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S SF++QI + TTP + + K L+ + Sbjct: 107 GVTGTNGKTSTVSFIKQILGYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMI 166 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E SSH L +R+D I A FTNL +DH+D+H+T + Y NAK +LF + Sbjct: 167 KNNCKYCVMEVSSHALVLNRIDNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFYKTK 226 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEG 297 DD +E ++ N + + G + + ++ + + ++ Sbjct: 227 SINIF---NIDDKVGEEFFNKSLNRDIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDK 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + P+ G F VYN L A CI +G+ V++ ++ L V GR + V N + Sbjct: 284 QKYKVSTPILGNFNVYNTLAAITTCILLGLSREDVIKRVQNLKSVSGRLDKV-ENDKNVN 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VDYAHT ++L ILK+ R T RII+VFGCGG+RD+ KRPIMGKIA ADI+I+T Sbjct: 343 IIVDYAHTPDALLNILKSARLFTKNRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITS 402 Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR E I +I+ GI + +R ++I+ AIE+ D++++AGKGHE Sbjct: 403 DNPRFEKEMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + +K D I ++IL Sbjct: 463 -IKGDKKYFFDDKLIAKKIL 481 >gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia proteamaculans 568] gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans 568] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + E++ DSR AG +FVA+VG++ DG FIP Sbjct: 5 NLRDLLAPWVPT-----------APGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + +D + T P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH Y AK LF Sbjct: 174 DQGATLAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAGHE 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + + + +A + G G+++ V N + S Sbjct: 234 VGQ--AIINADDEVGQRWLSQLPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +++G A ++ +L V GR E Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVF-NAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ VFGCGGDRD+GKRP+MG IA AD + Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFADRVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P+ I A+I+ G+ + R EA+ +AI +QDV++VAGKGHE Sbjct: 411 VTDDNPRTEEPQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 +V N D + +LG++ Sbjct: 471 YQLVGNRRLDY-SDRTTVARLLGVV 494 >gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 495 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella boydii ATCC 9905] Length = 495 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio fibrisolvens 16/4] Length = 490 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 136/502 (27%), Positives = 231/502 (46%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + EL +++I+ + DSR ++ +FV I G D H FI Sbjct: 1 MKLTTLLEELDYEL-------YAGELDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P I +GA AI++ D + V N+R+ L++ ++ +G + + Sbjct: 54 PDVIEKGATAIIIEKDVEPVD-------GITYIKVANSRQALAILSAAYFGHPAKELKTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I +++G+ + IG +I TTP + + + Sbjct: 107 GITGTKGKTTTTYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+ V +E SS L HR+ G G FTNL DHI + + L Sbjct: 167 VDAGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGE---NEHKDFEDYMHCKSL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISV 295 L ++ I+ D+ E + + H G +++ + Sbjct: 224 LFQQCKVGIFNGDSEHIEGILKGHTCDVIKYGYGKDNDLIAENVELLNENGALGVRYHIT 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +D +PG F VYN+L A +C + + L +HV GR E V +S Sbjct: 284 GKEDMTVEVNVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVHV-KGRIELVPVSS-K 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + +LE +L ++ GR++ +FGCGG+R + +R MG+++ LAD+ +V Sbjct: 342 FTVMIDYAHNAMALESLLTTLKAYEPGRLVCLFGCGGNRAKSRRYEMGEVSSKLADLTVV 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR+E+P I +I+ G+ ++ +R EAIR + + D++V+AGKGHE Sbjct: 402 TSDNPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K + ++I EI+ Sbjct: 462 YQEIK-GVKHHMDERELIAEII 482 >gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 495 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS223] gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS223] Length = 499 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 229/506 (45%), Gaps = 27/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ Q N+++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN 116 +A+ GA A++V + + Q R N I V +R+ ++ A R H Sbjct: 51 EKALDLGAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110 Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170 + +TGT+GK+S + + Q+ G + +G D+ TT I L Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y AK Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230 Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LF + +K G+Q + K Sbjct: 231 QSLFRFSTLGHGLLNLDDTVGESWLTELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGV 290 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 T+ + + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 SATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + VDYAHT +++E L +R G + VFGCGGDRD+GKRP+MG+ A Sbjct: 351 TTAK-NITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQY 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DN RSEDP +I +II G+ + + +RI AI+ + + DV+++AG Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHET G + + + R++ Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494 >gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis PB1/+] gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + + + + ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI Sbjct: 4 RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + A + G+ G ++ KV N + + + Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA + G A +L L V GR E + VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+ Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILG 494 D + +LG Sbjct: 481 Y-SDRVTVARLLG 492 >gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] Length = 481 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 151/500 (30%), Positives = 241/500 (48%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+D++ L IN + DSR + G +FV IVG + DGH +I Sbjct: 1 MKLKDILEGYPHSL-----NGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ G + I S + + + +NTR L+ FA+R Y + ++ Sbjct: 56 DSALKLGVKVICHSEELE------GYKDDITYIKCENTRNALAYFANRFYSFPSKNLKLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 V+GT+GK+S + + G + IG ++ + + TTP L K S + Sbjct: 110 GVSGTNGKTSFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V + +E SSHGL R+ + G F+NL DH+D+H+T + Y+ AK +L+ Sbjct: 170 VKNDVDYCFLEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLY--- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVE 296 + ++I DD Y + V+S G + + + + +K T++ Sbjct: 227 YMVDRFSVINIDDDYGHRLYNELKEDKKDVISFGEKEQSDYKITIKELSLSKSSFTLTKG 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +DF+ G+F +YN A + + GI + E + + H GR E V + Sbjct: 287 NNKYDFVINSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERVAED---- 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I++DYAHT +++E ILK IR ++S +I +VFGCGG+RD GKRPIMG ++ AD I+T Sbjct: 343 -IFIDYAHTPDAMEKILKLIREVSSKKITLVFGCGGNRDHGKRPIMGSVSEKYADNIILT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR E E I +I++GI +R EAI A+ ++++V GKGHET Sbjct: 402 MDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKGHETYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + + +K D + I L Sbjct: 462 ELGD-KKIYFSDREEILNSL 480 >gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens 200] Length = 500 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 146/507 (28%), Positives = 230/507 (45%), Gaps = 28/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ F ++ NE++ DSR I+ G +F+A+ G++ DG FI Sbjct: 2 MLLRDLLAPWFIY-----------SGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111 +A+ GA ++V + + Q + N + + +S A++ Y Sbjct: 51 DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110 Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIY 169 I+ +TGT+GK+S + + Q+ G + +G D+ TT I Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAIT 170 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y A Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAA 230 Query: 230 KMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K LF + +K G+Q + K Sbjct: 231 KQSLFRFSTLGHGLLNLDDPVGETWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQG 290 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 T+ + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 VSATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMER 350 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 T + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A Sbjct: 351 FTTAD-NITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQ 409 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD +VT DN RSEDP +I ++II G+ + + +RI AI+ + + D++++A Sbjct: 410 YADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLA 469 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKGHET G + + + R++ Sbjct: 470 GKGHETYQE-AAGVRHNYDERALARQL 495 >gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] Length = 486 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 150/501 (29%), Positives = 231/501 (46%), Gaps = 33/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++Y+ + I V DSR + +FVA G DGH +I Sbjct: 4 LKDILYRVSIN-------KVIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKN 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ QGA AIV + + + V N ++ L+ AS Y EN+ + V Sbjct: 57 AVNQGAIAIVCE------ELPKDTVNGVTYVKVQNAQQALAFMASNFYENPSENLQLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++AS + Q+ ++G + + + TTP + + K LS ++ Sbjct: 111 TGTNGKTTIASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G + +E SSHG+ QHR G+K G FTNL DH+DYH T Y + K + F+E LP Sbjct: 171 IGCEYCFMEVSSHGIAQHRTTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDE-LP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+ ADD +++ + + ++ + Sbjct: 230 SSAFALTNADDKNGMVMLQNTKAKKQTYALKSIADYKAQILENQFSGLLLKLNNNELWSK 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F YN L +G+ + L + +L V GRF+++ N Sbjct: 290 LIGNFNA------YNLLAIFATTELLGMQTMESLRLISELESVNGRFQYLIKN--KITAI 341 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I I + I V GCGGDRD KRP MG IA L+ I T Sbjct: 342 VDYAHTPDALKNVLETINAIRTKNEELITVVGCGGDRDATKRPKMGHIASVLSTKVIFTS 401 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP KI I G+ + +R +AI+TA + D++++AGKGHET Sbjct: 402 DNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + NGE+ D I++ +L Sbjct: 462 QEI-NGERTDFDDFKIVKTLL 481 >gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10 bacterium 'Dutch sediment'] Length = 504 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 160/507 (31%), Positives = 246/507 (48%), Gaps = 28/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DLI +++ + +++E+ DSR ++ G +FV I G + DGH FI Sbjct: 1 MQLFDLINGTEHQVLRGSV-------DLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A A GA A +V D + ++ V NTR+ L+ A R YG + ++ Sbjct: 54 QAAWAAGAVAALVER----TDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ V+ + + +G IG + + TTP L L + Sbjct: 110 GVTGTNGKTTTTYLVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 + V +E SSH L HR+DG + FTNL +DH+D+H T +AY +AK+ +FE Sbjct: 170 ARLRADSVVMEVSSHALALHRVDGCEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGL 229 Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 A + D + ++ R + + V + + + Sbjct: 230 GVGSTKTTEKAAVVNLDDPAADLF-LGATRVRRYSYSVEGPADLSVADVKMGPDGIRCRL 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 PL G + + N L AA + +G D + V + + LH VPGR E V T Sbjct: 289 QTPWGTTAIRSPLLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVETGQ 348 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++L +L+ R GR+IV+FGCGG+RD+GKRP+MG+ AL+LAD Sbjct: 349 A-FSVMVDYAHTPDALRRVLRMARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELADFT 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 ++T DNPR EDP +I EI G ++ +R AIR A+ + + D++V+AG Sbjct: 408 VITSDNPRGEDPHQIIEEIETGAKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAG 467 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHET I+ + D + RE L Sbjct: 468 KGHETYQILRD-RTIPFDDRLVAREAL 493 >gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] Length = 495 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 242/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P R + +++ DSR AG +F+A+ G+ DG FIP Sbjct: 5 NLRDLLAPWVP-----------GAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG A++ + D P++ + + LS A R Y + E + + Sbjct: 54 QAIAQGVAAVIAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q G + +G TT S + + L L Sbjct: 114 VTGTNGKTTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH Q+Y AK LF E Sbjct: 174 GQGATLAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + AII ADD + + + +A + G G+++ V + S Sbjct: 232 HQVGAAIINADDEVGRRWLAKLPDAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D +F L G F V N L+A +++ ++ +L V GR E + Sbjct: 292 SSWGDGEFDSRLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRMEVF-SAPD 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R G++ +FGCGGDRD+GKRP+MG IA AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPRSEDP+ I +I+ G+ R +A+ AI +D+++VAGKGHE Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D D + +LG++ Sbjct: 471 YQIVGNRRLDY-SDRDTVARLLGVM 494 >gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 495 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] Length = 491 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 144/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +F+ + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 S + + + V I + + T+ Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP+ I ++++ + + +R EAIR+AI + +D++++AGKGHET Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483 >gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] Length = 482 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 221/477 (46%), Gaps = 21/477 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + +DSR ++ G +FV + G D H F + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 I + P+++V NT + L++ A YG+ + + +TGT+GK++ + + +I + G Sbjct: 61 IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + I + + TTP + L + S + QGV +E SSH LD R+ G Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258 FTNL +DH+DYH+T + Y +A +L + D E Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R+ A + + K + T+ + + L G+F VYN L A Sbjct: 241 RSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G+ ++ +++L VPGRFE V + + VDYAHT +SLE +LK + Sbjct: 300 TAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP I +++ G Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAI AI + D++++AGKGHET I+ E D ++ +E + Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474 >gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-272] gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-227] Length = 495 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAAGK 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 352 PT-VVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM 10] gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10] gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis D106004] gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 309 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + + + + ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI Sbjct: 4 RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + A + G+ G ++ KV N + + + Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F V N LVA + G A +L L V GR E + VDYAH Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+ Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILG 494 D + +LG Sbjct: 481 Y-SDRVTVARLLG 492 >gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252] Length = 495 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 482 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 221/477 (46%), Gaps = 21/477 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + +DSR ++ G +FV + G D H F + + Sbjct: 10 ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 I + P+++V NT + L++ A YG+ + + +TGT+GK++ + + +I + G Sbjct: 61 IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + I + + TTP + L + S + QGV +E SSH LD R+ G Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258 FTNL +DH+DYH+T + Y +A +L + D E Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R+ A + + K + T+ + + L G+F VYN L A Sbjct: 241 RSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G+ ++ +++L VPGRFE V + + VDYAHT +SLE +LK + Sbjct: 300 TAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP I +++ G Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAI AI + D++++AGKGHET I+ E D ++ +E + Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474 >gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] Length = 492 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 153/507 (30%), Positives = 236/507 (46%), Gaps = 25/507 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ + N +S DSR I AG +F+A+ G+ DG FI Sbjct: 1 MRLSDLLAPWLHYSGPES-----------FNNISLDSRAITAGDLFIAVPGHLVDGRKFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFAS--RLYGKHPENI 117 A QGA A +V S + + + +P ++ + LS + G H + Sbjct: 50 GVAFEQGAVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S+ + Q+ G + +G D+ TT PI ++ L Sbjct: 110 IGVTGTNGKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQA 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G ++E SSHGL Q R++ + FTNL RDH+DYH T QAY +AK RLF+ Sbjct: 170 FNLAGADLCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKF 229 Query: 237 LLPKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + DD ++ + + G + S I+ T+ Sbjct: 230 TSLQSGLINL--DDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATL 287 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 PL G F + N + A G IG D + + +L V GR E T Sbjct: 288 VWPEGQAKLASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERF-TTD 346 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G + VDYAHT +++E LK +R G++ +FGCGGDRD+GKRP+M + A AD Sbjct: 347 NGVTLVVDYAHTPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAEAYADKV 406 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DN RSE PE I EI+ G+ + + +R +AIR + + D++++AGKGHE Sbjct: 407 MVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 T + GE+ + + + + G + Sbjct: 467 TYQEIA-GERLDYDERALAKSLAGERI 492 >gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ED1a] gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli ED1a] Length = 495 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii ATCC 27126] Length = 521 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 148/511 (28%), Positives = 228/511 (44%), Gaps = 31/511 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 + L+ F + + +I ++ DSR + F+AI G++ DG FIPQAI+ GA Sbjct: 7 IQSIKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARV 66 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 I+ + S +R ++ I+ + + LS A+ Y + + +AVTGT+GK+S Sbjct: 67 ILAQTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTS 126 Query: 129 VASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 + Q+ G S IG TTP I + L+ Sbjct: 127 TVQLLTQLKDALGTRSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSE 186 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V H + EASSH L Q RL +K FTNL RDH+DYH T + Y AK L ++ K Sbjct: 187 VRHTAFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLKA 246 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCR-----------------VLSVGYQGKFIHLKKVCA 284 + D++ + Q + Sbjct: 247 VVLNVNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATNASY 306 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + PL G+F + N L A G +A G V+ + + VPG Sbjct: 307 HAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPG 366 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + VDYAHT ++LE +L + + T+G++ VFGCGGDRD+GKRP+MG+ Sbjct: 367 RMEVFPVTGA-ANLVVDYAHTPDALEKVLLSAKFHTTGKVWCVFGCGGDRDKGKRPLMGQ 425 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461 A AD ++T DN RSE PE I +II G+ + +R +AIR +E ++ D+ Sbjct: 426 AAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLEHAHESDI 485 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++VAGKGHE I+ + +K + ++ + Sbjct: 486 IIVAGKGHEDYQIIGD-KKTNYNERAVVARL 515 >gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 495 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] Length = 544 Score = 309 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 154/495 (31%), Positives = 221/495 (44%), Gaps = 41/495 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ ++ DSR +Q G++F + G K DGH F A+ +GA A+VV + Sbjct: 56 QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVER---------YVD 106 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSF 145 + + V +TRK ++ A YG +L V T V+ I G Sbjct: 107 VDALQIRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVG 166 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG A + TTP + L L+ ++ +G V +E SSH LDQ R+ G+ Sbjct: 167 LIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVLGVDF 226 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---------------------- 242 FTNL +DH+DYH+T + Y +AK LF L + Sbjct: 227 DLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPK 286 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AII ADD + + + V + G + Sbjct: 287 RAIINADDPNAGFFIAASAAPVITYGIEADAMIKGRDWAVTPHGL--TCDVLYPGGEVRL 344 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F + NAL A A+GID + L + V GRFE + + VDY Sbjct: 345 NLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGRFERIDLGQ-PFSVIVDY 403 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + LE +L R + GR+I VFGCGGDRD+ KRP MG + L+D+AIVT DNPR+ Sbjct: 404 AHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGAVVARLSDVAIVTSDNPRT 463 Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP +I +I+ G+ + +R AI A+ + D++++AGKGHE+ IV Sbjct: 464 EDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPGDLVMIAGKGHESYQIVGA-R 522 Query: 480 KKMSVDCDIIREILG 494 D I RE L Sbjct: 523 VLPFDDRQIARERLR 537 >gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D12] gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] Length = 483 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 231/488 (47%), Gaps = 19/488 (3%) Query: 8 YKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K +++ L +Q E I + DSR I G IF+A+ G+ DGH FI AI + Sbjct: 2 SKFMDKILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQK 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA + VS S Q +++ N RK L + AS Y + + + T Sbjct: 62 GARLVFVSKEVSCQ-------QGIGYILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTN 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 + + G I + TTP + L K + QG+ ++ Sbjct: 115 GKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYI 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L+ R++ ++ FTNL DH+DYH+T + YF AK +LF + L + I Sbjct: 175 VMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-LRGKGIKI 233 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD+Y K + + H G + K + ++++ +S+ G + Sbjct: 234 FNIDDSYGKRLWEEFHGVS-----YGMNKADVQGKILAFEGGREEIELSLFGNKKECKIQ 288 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G F +YN L + L +G+ + L L PGRFE + + +DYAHT Sbjct: 289 ILGGFNLYNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDCGQ-DYMVIIDYAHT 347 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE IL+ ++ I SG+II +FGCGGDRD KRPIM +IA +D ++T DNPR+E+P Sbjct: 348 GDALENILQAVQEIKSGKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENP 407 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 E I E+ G I R EAI I NK D++++AGKGHET I+ +K Sbjct: 408 ESILEEVKSGFTKENHICILERAEAIAEGIRRANKGDMVLIAGKGHETYQILGR-KKYHF 466 Query: 484 VDCDIIRE 491 D + R Sbjct: 467 DDREFARR 474 >gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 495 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K-12 substr. W3110] gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli] gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K12 substr. W3110] gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1] gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli DH1] Length = 495 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] Length = 477 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 149/481 (30%), Positives = 237/481 (49%), Gaps = 25/481 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + I+++ DSR I+ +FVAI G +GH +I +A++ GA AI+ + Sbjct: 7 HGTTDIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICE------EL 60 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 + I + + V +T + L+ ++ + ++ VTGT+GK+++AS + Q+ +++ Sbjct: 61 PSNIVNGVTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKA 120 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + + TTP + L L + G +E SSHG+ Q R Sbjct: 121 GYKVGLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRT 180 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + ++ + G FTNL DH+DYH T Y + K F + L K++ AI DD +++ Sbjct: 181 EALQFVGGVFTNLSHDHLDYHNTFAEYRDVKK-SFFDGLSKDAFAITNIDDKNGAIMLQN 239 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 Y + + + ++ D + L G F YN L Sbjct: 240 TKAKKLSYALKSYADYKAQILENQLSG------LLLKINDNEVWVKLIGSFNAYNLLAIY 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ + +GID L L +L V GRF+F+ + VDYAHT ++LE +LK I I Sbjct: 294 GVAVELGIDKMEALRLLSELESVSGRFQFI-VSDLKITAIVDYAHTPDALENVLKTIEDI 352 Query: 380 TSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 + I V GCGGDRD+ KRPIM IA L+D AI T DNPR+E+PE I E+ G+ Sbjct: 353 RTKNEQLITVVGCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETIIEEMEKGVE 412 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R +AI+TA ++ N D++++AGKGHET + NG + D II E+ Sbjct: 413 PQNFKKTVSILDRKQAIKTACQLANPNDIILIAGKGHETYQEI-NGLRHDFDDLKIITEL 471 Query: 493 L 493 L Sbjct: 472 L 472 >gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36] gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36] Length = 503 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 220/473 (46%), Gaps = 8/473 (1%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +N + DSR +QAG FVAI G+ DG FI +A+ GA A++ + + Sbjct: 29 ELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDY 88 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 PI+ + LS A Y + ++ VTGT+GKS++ + + Sbjct: 89 IDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGKA 148 Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G TT S + + ++ QG ++E SSHGL Q R++ + Sbjct: 149 GVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSHGLIQGRVNALD 208 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH AY +AK LF+ + + + A + A Sbjct: 209 FDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHKILNVDDAYGKMWAQQWSDAIQF 268 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + G F++ ++ + D L GEF N + A + Sbjct: 269 SVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSLIGEFNASNVVAACASLL 328 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G D +L KL V GR E + VDYAHT ++LE L+ +R G+ Sbjct: 329 ALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAAC-VVDYAHTPDALEKALQALRVHCEGK 387 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440 + ++GCGGDRD GKRP+M ++A AD+A++TDDNPR+E I ++++G+ Sbjct: 388 LWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDNPRTESAAAIVTDMLNGLAKPDAAH 447 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI+ A+E + D+++VAGKGHE I+ EK D + I E+L Sbjct: 448 VIHDRRRAIQWAMEQSSADDIILVAGKGHEDYQIIG-VEKHHYSDRETITEML 499 >gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] Length = 491 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 144/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +F+ + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 S + + + V I + + T+ Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP+ I ++++ + + +R EAIR+AI + +D++++AGKGHET Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483 >gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus weihenstephanensis KBAB4] gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus weihenstephanensis KBAB4] Length = 491 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 145/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR ++ G +F+ + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V NT + L++ A YG+ + + Sbjct: 53 --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + + TTP + L + S + Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV +E SSH LD R+ G FTNL +DH+DYH+T + Y NAK LF +L Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 S + + + V I + + T+ Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G+F VYN L A + G+ +++ +++L VPGRFE V + Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP+ I ++++ + + +R EAIR+AI + +D++++AGKGHET Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483 >gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis FV-1] Length = 478 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 165/479 (34%), Positives = 232/479 (48%), Gaps = 14/479 (2%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 1 PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 P++ + N + LS A + Y + ++ VTGT+GK++ + Q Q G + Sbjct: 61 EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120 Query: 144 SFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G TT S + + L L QG T ++E SSHGL Q R+ + Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL RDH+DYH +Y AK LF + ADD + + + Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDVGRRWLSQLPQ 238 Query: 263 AGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + G+ G ++ KV N + + + L G F V N LVA Sbjct: 239 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G A +L L V GR E + VDYAHT ++LE L R Sbjct: 299 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARL 357 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ Sbjct: 358 HCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSGLLD 417 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R EA+ +AI + DV+++AGKGHE +V N D + +LG Sbjct: 418 AGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLG 475 >gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] Length = 490 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 236/489 (48%), Gaps = 14/489 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + + + + ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + Sbjct: 3 DLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 D S P++ + N + LS A + Y + ++ VTGT+GK++ + Sbjct: 63 DGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G +S +G TT S + + L L QG T ++E SSH Sbjct: 123 AQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + A FTNL RDH+DYH +Y AK LF + ADD Sbjct: 183 GLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDV 240 Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + A + G+ G ++ KV N + + + L G Sbjct: 241 GRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N LVA + G A +L L V GR E + VDYAHT ++ Sbjct: 301 AFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I Sbjct: 360 LEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N D Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SD 478 Query: 486 CDIIREILG 494 + +LG Sbjct: 479 RVTVARLLG 487 >gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] Length = 524 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 155/489 (31%), Positives = 227/489 (46%), Gaps = 34/489 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR ++ G F+A G K DG FIP AI +GA A+V D P Sbjct: 34 HLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKT----P 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + + A LY + + + VTGT+GK+S + ++ Q + IG Sbjct: 90 NLPVPDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGT 149 Query: 150 TSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + TTP + L ++ +G V++E SSHG+ Q R++G Sbjct: 150 LGAGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATFAVAM 209 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T + Y AK RLF A++ DD + +++ G ++ Sbjct: 210 LTNLSRDHLDYHGTMEVYAAAKARLFHW--RGLKYAVLNLDDVFGMQLLHDLEGTGTGMI 267 Query: 269 SVGYQGK-----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 G+ + + + A + I EG+ F + G F N L Sbjct: 268 GYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLLG 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A GI + L+K+ V GR + +G I VDYAHT ++LE +L +R Sbjct: 328 VLATLLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEKVLTTLR 387 Query: 378 TITS------------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 GR++ VFGCGG+RDQGKRP+MG++A LAD AI+T DNPRSEDP Sbjct: 388 EAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLADEAIITSDNPRSEDP 447 Query: 426 EKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 + I I G +R AI AI +K DV+++AGKGHET G+K Sbjct: 448 DSIIRGIAVGAAANHRIEKDRAAAIHRAIRGTHKGDVVLIAGKGHETWQE-AGGKKFPFS 506 Query: 485 DCDIIREIL 493 D ++ R+ L Sbjct: 507 DAEVARKAL 515 >gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] Length = 508 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 148/483 (30%), Positives = 224/483 (46%), Gaps = 23/483 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I + +DSR I+ G F+A G+ DG+ FIPQAIA GA A++ ++F Sbjct: 21 VEIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDP----RNFVWKSE 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L VD+ + L AS +Y + ++ +TGT+GK+S + + Q G + Sbjct: 77 WRIPALAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTA 136 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + Q TTP L ++ +G +V +E SSHGL Q R G Sbjct: 137 VLGTLGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-------ADDAYSKEVM 257 TNL RDH+DYHQ AY AK LF K + + + +K + Sbjct: 197 SVALLTNLSRDHLDYHQDMDAYAAAKSSLFFWPGLKYAVVNMDDVLGVELSRQLVTKPIK 256 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + Q K +H + + + I E L G+F N L Sbjct: 257 MMGYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNLLA 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A GI + L+ + +PGR E I VDYAHT ++LE +L +R Sbjct: 317 VVAALLASGIRLPDAVGSLQSVQSIPGRMEKY-YGINQSTIIVDYAHTPDALEKVLCTLR 375 Query: 378 TI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + R+ V GCGGDRD+GKR ++G++A LAD I T DNPRSEDP +I +I Sbjct: 376 ELLRIEGRNARLFCVVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRIIEDI 435 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G + + +R AI AI D++++AGKGHE + G+K D ++++ Sbjct: 436 AAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKGHEKFQEIK-GQKISFSDAEVVQ 494 Query: 491 EIL 493 ++L Sbjct: 495 QVL 497 >gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 5 str. 8401] gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401] Length = 495 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 171/503 (33%), Positives = 251/503 (49%), Gaps = 25/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 IV N D + +LG Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLG 492 >gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] Length = 507 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 155/502 (30%), Positives = 239/502 (47%), Gaps = 23/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + + I+ + DSR + +G +FV +G DGH F+ Sbjct: 1 MTLTELLDE-----AKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 PQA QGA IV + + + +++V +T LS A YG+ E+ ++ Sbjct: 56 PQAAEQGAVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + ++ I + GL + IG S QD TTP +YL K ++ Sbjct: 110 GITGTNGKTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMAT 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +E SSH L Q R I FTNL RDH+DYH+ + +Y AK +LF Sbjct: 170 MVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFAS 229 Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ ++ DD + + + V + +H + + V + Sbjct: 230 MVDPARHRKVVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKT 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + L G VYN L A + IA+ ++ +E++ VPGR E V + Sbjct: 290 PRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQP 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++L +L +R RII V GCGGDRD+GKRP+M KIA +++ I Sbjct: 349 FAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIF 408 Query: 416 TDDNPRSEDPEKIRAE----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSEDP K I +G R A+R A+ M + D +V+AGKGHE Sbjct: 409 TSDNPRSEDPRKFERSYYPPIWNG-NRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEK 467 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ E+K D + RE L Sbjct: 468 YQIIG-KERKYHDDREECREAL 488 >gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 487 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGLKQESRLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G R +AI I DV+V+AGKGHE + +G+++ D Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471 >gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] Length = 502 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 150/498 (30%), Positives = 241/498 (48%), Gaps = 17/498 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F + + + + ++ V DSR + G +FVA+ G DG+ +I AI +GA A Sbjct: 3 FSQALAGVDTTARSGPDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 I+ SA ++ + ++R++ I V + R+ ++L A+ +G HPE LAV+G +G + Sbjct: 63 ILTDSAEAMA--TWSLRTDVAIAQVPHGRQAMALVAANFFG-HPERQLAVSGVTGTNGKT 119 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + + TI + TTP L GVT Sbjct: 120 TTTFLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAV 179 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R+ GI FTNL RDH+D+H + Q YF AK LF+ L + + Sbjct: 180 MEVSSHALAQGRVYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVSV 239 Query: 247 YA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 +D + E+ A G + S G+ + V + Sbjct: 240 LNLEDPHGAELALTAREHGSEIYSYGFNTGEFRAEDVQLSGGGMRFHWHTPFGHAPVTTR 299 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G VYN L A+ +A G+ V+E + LH VPGRF+ + + VDYAHT Sbjct: 300 LIGRVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGRFQ-TIDEGQPFTVVVDYAHT 358 Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++L ++ R + GR+I +FGCGGDRD+ KRP+MG+ A + +D+ ++T DNPRS Sbjct: 359 DDALRNLIALARDLVHKHKGRVITLFGCGGDRDRTKRPLMGQAAAEGSDVVVLTSDNPRS 418 Query: 423 EDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EDPE I A+++ G+ ++ + +R IR A+E+ D++++AGKGHE + +G Sbjct: 419 EDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKGHEKTQTLRHG 478 Query: 479 EKKMSVDCDIIREILGLI 496 D + +L + Sbjct: 479 T-IPFDDVAVAAAVLREM 495 >gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli ABU 83972] Length = 490 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 168/491 (34%), Positives = 247/491 (50%), Gaps = 14/491 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + Sbjct: 3 DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133 D P++ + + LS A R Y + +N+ + VTGT+GK++ + Sbjct: 63 KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G S +G TT S + + L+ L QG T ++E SSH Sbjct: 123 AQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL QHR+ +K A FTNL RDH+DYH + Y AK L+ AII ADD Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEV 240 Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + +A ++ G+++ V + + S D + L G Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+A +A+G A +L+ +L V GR E T + VDYAHT ++ Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419 Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ R EA+ A+ + DV++VAGKGHE IV N D Sbjct: 420 INDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478 Query: 486 CDIIREILGLI 496 + +LG+I Sbjct: 479 RVTVARLLGVI 489 >gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 491 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 227/501 (45%), Gaps = 27/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ K + ++++ V DSR ++ G +F+ I G DGH F+ Sbjct: 7 MKLISLLEKLEYTCLQGS-------TDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P +A+GA+ ++V A + + +++V +TR ++ ++ +G E + + Sbjct: 60 PDVVAKGAKVLIVEEAVEAPE-------DVTVILVKDTRYAMAFISAAYFGYPAEKLKTI 112 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I + TTP + + + Sbjct: 113 GITGTKGKTTTTYMVKSILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEM 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SS GL HR G G FTN+ DHI ++ + +R L Sbjct: 173 AEAGCDCVVMEVSSQGLMLHRTQGFVFDFGIFTNIEPDHIGPNEHKDFDDY--LRCKSLL 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + I+ DD + +++++ + K+ ++ ++G Sbjct: 231 LKQCKVGIVNRDDEHFEKIIEGHTCSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKG 290 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 DF +PG+F +YN+L A +C + + K+ V GR E V + Sbjct: 291 LLDFHVEIDIPGKFSIYNSLTAIAICRHFKVS-EENILKALKVAKVKGRIEMVKVSD-DF 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + +LE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T Sbjct: 349 TLMIDYAHNAMALESLLTTLKEYHPHRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIIT 408 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I G+ ++E +R EAI AI D++V+AGKGHE Sbjct: 409 SDNPRDEEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKGHEDY 468 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G+K + +I +IL Sbjct: 469 QEIK-GKKYPMDERVLIADIL 488 >gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 495 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 301] gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301] gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Shigella flexneri 2002017] gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2747-71] gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri VA-6] gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-304] Length = 495 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494 >gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 487 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGLKQESRLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G R +AI I DV+V+AGKGHE + +G+++ D Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471 >gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] Length = 519 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 158/495 (31%), Positives = 240/495 (48%), Gaps = 21/495 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ + P RER+I+ +S DSR + G +F A G ++ GH +I Sbjct: 22 LSDLLAEWVP---------IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGA 72 Query: 63 AIAQGAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ QGA AIV S + N P++ + + L + A+R Y + L Sbjct: 73 AVNQGAAAIVYDPVIPVSPVIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVL 132 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV+ F+ Q R + IG Q + LTTP I + + L+ + Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAM 192 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + +E SSH L Q R+ G+ FTNL R+H+DYH Y AK RLF + Sbjct: 193 VASKARYAVLEVSSHALGQGRVSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQP 252 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + A + + +H K+ + +TI Sbjct: 253 GLRHAVINGDDA-AGRAFLANLPPEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQSAW 311 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F YN L A G +A+G+ L+ L ++ V GR E +G Sbjct: 312 GEGQLTCPLLGRFNAYNLLAALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPL 371 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L+++R GR+ VFGCGG+RD+GKRP+MG A LAD ++ Sbjct: 372 LVVDYAHTPDALEQVLRSLRAHLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLADFVML 431 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPR+EDP +I +I+ GI + NR EAI A ++ +D++++AGKGHE Sbjct: 432 TDDNPRNEDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHEEY 491 Query: 473 HIVTNGEKKMSVDCD 487 + E++ D + Sbjct: 492 QQIGA-EQRPFSDRE 505 >gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 506 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 153/487 (31%), Positives = 235/487 (48%), Gaps = 15/487 (3%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S + +WRE + ++ DSR I+ +FVA+ G+ DG FIP AI GA A++ + Sbjct: 21 SDWQEKWREHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSI 80 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 + I+ ++LS A+R Y + +LAVTGT+GK++++ + Q Sbjct: 81 ANHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140 Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G ++ +G T + TT + I + L L QG ++E SSHGL Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLV 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ ++ +A FTNL RDH+DYH Y +AK LF E ADD Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVIN--ADDDIGLS 258 Query: 256 VMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + NA V GYQG+ + L V ++ F PL G F Sbjct: 259 WLADLPNAVAVVTDKARLGEGYQGQALWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSF 318 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L+A +A+G ++ +L V GR E + + + VDYAHT ++LE Sbjct: 319 NVSNLLLALATLLALGHSIDKLIAAAPRLTAVIGRMEVFQRSDKPM-VVVDYAHTPDALE 377 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ +R G++ +FGCGGDRD GKRP+M +I+ LAD I+TDDNPR+E P I + Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAPAGIVS 437 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +++ G+ +R A AIE D++++AGKGHE ++ + D + Sbjct: 438 DMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKGHEDYQVLADRTIHY-SDRE 496 Query: 488 IIREILG 494 ++ + G Sbjct: 497 TVQALFG 503 >gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis CO92] gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate ligase [Yersinia pestis CO92] gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] Length = 490 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 236/489 (48%), Gaps = 14/489 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + + + + ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + Sbjct: 3 DLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 D S P++ + N + LS A + Y + ++ VTGT+GK++ + Sbjct: 63 DGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G +S +G TT S + + L L QG T ++E SSH Sbjct: 123 AQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ + A FTNL RDH+DYH +Y AK LF + ADD Sbjct: 183 GLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDV 240 Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + A + G+ G ++ KV N + + + L G Sbjct: 241 GRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N LVA + G A +L L V GR E + VDYAHT ++ Sbjct: 301 AFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I Sbjct: 360 LEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N D Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SD 478 Query: 486 CDIIREILG 494 + +LG Sbjct: 479 RVTVARLLG 487 >gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] Length = 494 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 27/504 (5%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ++I+ L + +Q I ++++DSR ++ +F+A+ G DGH +I Sbjct: 2 KTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYID------ 55 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 +A+ + + T+ ++ ++ V +TR+ + + + + VTGT+G Sbjct: 56 -KAVAAGAVAVIVSKPVTVPNDVCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ I + G IG + + TTP + L L + + V + Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVEY 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239 +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE+ Sbjct: 175 CVMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DD+Y VM++ ++G ++ V Q T++ +G+ Sbjct: 235 DNKGAVINIDDSYGHRVMEKTTAPTITYSTLG--KGTLNASDVHMSTKNSQYTVNYKGES 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G C+ GI + L+ VPGRFE + + + Sbjct: 293 YPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELI-EEGQDFAVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L+ IL+ + I RII+VFGCGGDRD KRPIMG+IA + D VT DN Sbjct: 352 VDYAHTPDGLQNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PR+EDP +I ++ G+ + +R EAI AI D++++AGKGHE Sbjct: 412 PRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIAGKGHENY 471 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I+ N E D + R+ L I Sbjct: 472 QILKN-ETIHFDDREEARKALKEI 494 >gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 495 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] Length = 486 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 152/503 (30%), Positives = 243/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +++LI E + + +I DSR ++ +F A+ G + DGH +I Sbjct: 1 MVIENLIKG--IETKKIIGPVQNDIIDIQI-----DSRGVKKQSLFAALRGTQVDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI QGA AI+ D + + V ++ L + AS Y + + Sbjct: 54 NQAIKQGAVAILCE------DLPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + + ++ G + + + I A + TTP + + K L + Sbjct: 108 GVTGTNGKTTVATILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G + +E SSH +DQ R+ G+K G FTNL RDH+DYH+T Y AK F + Sbjct: 168 VLRGCDYAFMEVSSHAIDQKRISGLKFAGGIFTNLTRDHLDYHKTIANYIKAKK-EFFDN 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + +++ DD +++ +A + + E Sbjct: 227 LPKNAFSLVNLDDKNGMVMVQNTKSAIHTYSLRSLCDFKARVIESHFNGMIL------EI 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + D + G+F VYN L G +G + VL + L V GRFE + +G Sbjct: 281 NNTDVVVQFTGKFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETL-QAPKGYT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++L +L I I G++I V G GG+RD+GKRP+M K ++ +D I+ Sbjct: 340 VIVDYAHTPDALTNVLTTIHDILDGKGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR EDP++I +++ G+ + NR +AI+TA + DV+++AGKGHE Sbjct: 400 TSDNPRFEDPQEIIKDMLDGLNTEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G K D + +R I Sbjct: 460 TYQNIQ-GVKHHFDDKEEVRNIF 481 >gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] Length = 471 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 240/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +G +FVA++G++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + E + + VTGT+GK++ + Q CQ G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + + + + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E + + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKTTVVVDYAHTPDALEKALQAARLHCTGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA AD+ +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDILAGMLDAGRAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI + DV++VAGKGHE IV + D + +LG+I Sbjct: 418 EGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLDY-SDRVTVARLLGVI 470 >gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microcystis aeruginosa NIES-843] gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Microcystis aeruginosa NIES-843] Length = 497 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 162/500 (32%), Positives = 237/500 (47%), Gaps = 16/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ + I E +I +S++S Q G +F+ + G + DG F Sbjct: 1 MKLQELLT----TIPLVSPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ GA + + ++VV + + A++ Y + ++ Sbjct: 57 RSALETGAV---AAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++G+ + G T Q+ TTP L +L+ Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S G +E SSH L Q R+ G FTNL RDH+DYH + YF AK +LF Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII DDAY + + SV + K + Q + Sbjct: 234 -YLQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPTGVQGVMVTPQ 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 + F PL G++ + N L A + G+D V+ + + VPGR E + Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDI 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT Sbjct: 353 SVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E PE+I +I+ GIP +R AI TAI+ D +++AGKGHE Sbjct: 413 SDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQ 472 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R L Sbjct: 473 ILGT-EKIHFDDREQARAAL 491 >gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 142/505 (28%), Positives = 235/505 (46%), Gaps = 22/505 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ ++ E I +S +S Q G +F+AI G+K+DG +I Sbjct: 1 MTLRELLAPWIKQI----------PFECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P AIA+G AI+ + + + PI+ + K LS A Y + ++ Sbjct: 51 PSAIAKGVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 +TGT+GK++++ + G +S +G + TT S I + + L + Sbjct: 111 GITGTNGKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQV 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGV +E SSHGL Q R+ + A F+NL +DH+DYH Y AK +LF EL Sbjct: 171 CDQGVKFSIIEVSSHGLVQDRVSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSEL 230 Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + + + + + + G ++ +K+ + + + Sbjct: 231 NVSKRIINVDDTVGKNWLVHLPQAVAVTANNSIPHNWPGYWLCARKIIHHTSGVNINFNS 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L GEF V N L++ + +G +++ KL + GR E + Sbjct: 291 YWGSGEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWP 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++L L ++ G+I +FGCGG+RD+ KRPIMG IA + AD I+ Sbjct: 351 V-VIVDYAHTPDALAKALLAVKMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADYIII 409 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T+DNPR E+P+ I +I G R AI+ AI + QD++++AGKGHE Sbjct: 410 TNDNPRWEEPQDIIEDIKCGFINGNHTNKTVILCRSLAIQHAIIHASPQDIILIAGKGHE 469 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 I+ G++ D ++ +L L Sbjct: 470 NYQIIK-GKQFYYSDRIVVSNMLKL 493 >gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] Length = 499 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 236/505 (46%), Gaps = 24/505 (4%) Query: 1 MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M L+ L + L++Q + ++ + DSR G IFVA+ G DG Sbjct: 1 MNLKPLNNYIVALTEEHLLSQAHTGAVSTELCQVTSIEQDSRRASEGCIFVALRGVHVDG 60 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +IP+A+A G IV ++ L V +T K +++ AS Y + Sbjct: 61 ADYIPKALAAGCRIIVTEHP-----RPESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 I+ VTGT+GK++ A+ Q+ G+ + I TTP + L + Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDEEYPATHTTPDALELHRV 175 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + + G ++ +E SSH L Q R+ G+ FTNL RDH+DYH T QAY AK L Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ L ++ A++ ADD +++ + L T+ Sbjct: 236 FDN-LSPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMSQL----LGQYVDGSTL 290 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ ++ + A+ + +D +L+L + L V GRF+ + + Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++LE +LK + + + ++ VV G GGDRD GKRP MG+IA ++ + Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCL 409 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T DNPRSEDP+ I +++ GIP +R +AI A + D++V+AGKG Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQVERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET + G K D ++ +EI Sbjct: 470 HETYQEIK-GIKHHFDDKEVAQEIF 493 >gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 496 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 230/499 (46%), Gaps = 21/499 (4%) Query: 9 KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL L + + +I + DSR + G +F IVG D H FIP G Sbjct: 3 KRLEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++ A S + + +L V N K L Y ++ +TGT+G Sbjct: 63 ARAVLTERA------SVDVPAGVAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + V+ I + +G IG + I TTP I L + L+ + ++G+ Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDT 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241 V +E SSH L R+ GI+ FTNL +DH+D+H+T + Y AK LFE KE Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKE 236 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + E M+ V + A + + + F Sbjct: 237 GKTAVLNADDAASETMRAYTRCPIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G F V+N L A G +A + + + L VPGRFE V + VD Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVREGQ-DFAVIVD 355 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + +E +L+ R +T G II VFGCGGDRD+ KRPIMG+I ++ADIAI+T DNPR Sbjct: 356 YAHTPDGMENVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPR 415 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP I E+ G+ + + +R AI AI D +V+ GKGHET I+ Sbjct: 416 TEDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKGHETYQIL 475 Query: 476 TNGEKKMSVDCDIIREILG 494 +G D + RE + Sbjct: 476 KDGTI-HFDDREQAREAIR 493 >gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] Length = 493 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 228/503 (45%), Gaps = 26/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ F ++ N+++ DSR + G +F+AI G++ DG +I Sbjct: 1 MLLRDLLAPWFHYAGSES-----------FNKLTLDSRAVGPGDLFIAIPGHQADGRKYI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119 A+ QGA A +V + IL R+ +L A ++ Sbjct: 50 RSAVQQGAVASLVHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ + Q+ G S +G D+ TT I + L Sbjct: 110 VTGTNGKTSITQLMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFD 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG ++E SSHGL Q R++ + FTNL RDH+DYH T QAY +AK RLF Sbjct: 170 AQGAELCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFNFPS 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVT 292 + DD K+ + S+ K I+ + H Sbjct: 230 LSSGLINL--DDEIGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAK 287 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + G D PL G F + N + A G +G D ++ + KL V GR E T Sbjct: 288 LVWPGGHADLCSPLLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERF-TT 346 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 I VDYAHT +++E LK +R G + +FGCGGDRD+GKRP+M + A AD Sbjct: 347 PDDVTIVVDYAHTPDAIEQALKALRGHCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADR 406 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +VT DN RSE P+ I +I+ G+ + + +R AIR + D++++AGKGH Sbjct: 407 VVVTSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKGH 466 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET + ++ + + RE+ Sbjct: 467 ETYQEIAGVRRQY-DERALAREL 488 >gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] Length = 493 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 148/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ +++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117 +A+AQGA A++V + + + K +S A+ Y I Sbjct: 51 DKALAQGAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK+S + Q+ + +G D+ TT I L + L Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYE 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y AK LF Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293 + + DD + N ++ + + K Q + Sbjct: 231 DALRHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQAKL 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D PL G F + N L A G+D + + L V GR E T Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DN RSEDP +I +II G+ + + +R+ AI+ + DV+++AGKGHE Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G + + + R++ Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488 >gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 489 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 153/504 (30%), Positives = 245/504 (48%), Gaps = 25/504 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ E+I+ + VS DSR ++ G +F+ I G DGH +I Sbjct: 1 MKLYNLLKDLDYEIISGSV-------DIDARSVSYDSRKVKGGSVFICIKGANADGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA AIV+ + + N ++ V NT+ L+ A+ Y + + N++ Sbjct: 54 DEAIKSGALAIVIQEEIKIDN------ENITVIKVRNTKLALASIANVFYNEPSKEINLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKAL 174 VTGT+GK++V +++ I + + IG + Q TTP + L Sbjct: 108 GVTGTNGKTTVIHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLF 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++G ++ +E +S L + R++ G FTNL +DH++ H T + Y N K++LF Sbjct: 168 REFINKGAENIVMEVTSSALAKQRVEYCDFKVGVFTNLSQDHLEEHGTMENYKNEKIKLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + ++ + G + + + K + Sbjct: 228 KKCELGVINLDDGIAEEIIQKASCKILTYGINKEADIRATEIRYRNDCIIFKIKFRDIKW 287 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D +PG+ VYN L A G CI +G+D ++ L L VPGR E + N Sbjct: 288 RWWCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRLEMIKNNL- 346 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT ++LE +L R T G++I VFGCGGDRD+ KR +MG A L+D I Sbjct: 347 NKNIIVDYAHTPDALERLLMMARETTKGKLITVFGCGGDRDKSKRKVMGMAAGILSDYCI 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR+EDP KI +I G+ + + +R +AI +++L D+L++AGKGHE Sbjct: 407 ITSDNPRTEDPIKIIEDIEEGMEVINSTYEKIVDRKKAIEKGLKLLKDDDLLIIAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 I+ +K D +I+R+ LG Sbjct: 467 DYQIIG-KDKIYFDDREIVRKALG 489 >gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185] gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185] Length = 495 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494 >gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 502 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 230/473 (48%), Gaps = 18/473 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNT 90 V+ DSR ++ G +F+A G+ DG +I +AIA GA A+ A + DF+ Sbjct: 29 GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L V R+ A+ +YG+ E + +AVTGT+GK+SV+ ++ R IG Sbjct: 89 ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPR---RCAVIG 145 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + TTP+ L + L+ + ++EASS G+ + RLDG ++ Sbjct: 146 TLGAGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVA 205 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T AY AK RLF P+ A+ DD + +E+ + Sbjct: 206 VFTNLTRDHLDYHATMAAYAQAKARLFAW--PRLRLAVSNLDDPFGRELAALSTATKVIG 263 Query: 268 LSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + I + + + + + L G + V N L A + I Sbjct: 264 YTQQAGADDRQGTIRAENIEETIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVAAVLI 323 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G+ V E +L PGR E +G + VDYAHT ++LE L +R + + R Sbjct: 324 DAGLTPKAVAERFAQLSSPPGRLEKIG-GHNEPLVIVDYAHTPDALESALMALRPVANAR 382 Query: 384 ---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 ++V+FGCGGDRD+GKRP+M +A AD ++T DNPRSE+ I A+I+ G P + Sbjct: 383 GAGLVVIFGCGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAPTAL 442 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAIR + + DV+++AGKGHE + G ++ D R L Sbjct: 443 VIADRGEAIRRTLLAAHPADVVLIAGKGHEPYQEIA-GVRRPFSDGAQARAAL 494 >gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] Length = 956 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 228/467 (48%), Gaps = 17/467 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I+ G IFV I G DGH FI A+ +GA IV + + P Sbjct: 38 VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGAAIIVC---------REINKRDIPY 88 Query: 93 LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V +TRK ++ A L K P ++ +TGT+GK++ + + + + G IG Sbjct: 89 IKVKDTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTL 148 Query: 151 STISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 A + TTP I L + + V +V +E SSH L R+ G+K F Sbjct: 149 GYYIEGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRIYGVKFDYCLF 208 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 +NLGRDH+D+HQT + Y AKM FE+ S ++I DA+ ++ +V S Sbjct: 209 SNLGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVYS 268 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 +G + N + E + L G F + N + A+G Sbjct: 269 LGGNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSP 328 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L+ + V GR E V N+ I++DYAHT +++ +LK + + RI+ + G Sbjct: 329 EAIHNSLKDIPPVQGRLERV-ENNFNIGIFIDYAHTPEAIDNVLKAVEDLPHKRILCLIG 387 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRI 446 GGDRD+GKRP+M K AL+ +D+ I++DDNPRSE+PE+I +I+ F+ NR Sbjct: 388 AGGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFLPWWIIRNRQ 447 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AI + I + ++D++++ GKG E + G + D + + L Sbjct: 448 QAISSIIRLAQEEDIVLICGKGSEDYQEIE-GVRHHFNDREETLKAL 493 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 146/448 (32%), Gaps = 55/448 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N +S DSR I+ G +F+AI G K DGH ++ + + Y L FS Sbjct: 537 NYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFSEENS--- 593 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V+N + + L + P +A+TG++GK++ + Q+ Q S + Sbjct: 594 -YYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANE 652 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + I + P + + + A + G Sbjct: 653 NNIIGLCKTIIRIKPE-----QQYAIFELGTNHFGEIAALADV--------ANPDIGIIL 699 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H++Y ++ F K+ LF+ L + DD + + G S Sbjct: 700 NIGPSHLEYFGDEEGVFREKITLFKRPLALR---LYPGDDFRFDYLANEGISIGYNENSD 756 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + K + + + + P N+ A L + +GID Sbjct: 757 YRITRHKCNKDNQSFY----------LNEDLWFLPYGAPHYAINSAFAIVLGLKLGIDKE 806 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFG 389 + L K + R + G I Y S++ L+ + + + + G Sbjct: 807 KMQTALNKPIQLELRNQVEKRG-TGLLILDCYNANPYSMQKALEYWQELNPEQPHYAILG 865 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHGIPGFI 440 G+ ++ + ++ + T N P E P I H Sbjct: 866 DMLELGESSILYHQMISAMLAEMRYEKLYTVGNYSRIYHPEKESP------IFHYNTVEE 919 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +R + L + +++V KG Sbjct: 920 LIADRK------LNSLPENAIILV--KG 939 >gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum WCFS1] gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum WCFS1] Length = 550 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ LI + + P + + ++ D+R +Q G +F+A+VG DGH + Sbjct: 58 MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI +GA+ IV S + N P++ V+NT + +++ A YG + + + Sbjct: 113 DQAIEKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + ++ IG I TTP I + L+ + Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283 Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A++ DD +E + A + I+ + V + + Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +SV G L G+F VYN L A A GI +++ LEK+ V GRF+ V Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ + Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I +++ G+P +R AI AIE DV+++AGKGH Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ K D + + L L Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545 >gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1357] Length = 490 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 249/491 (50%), Gaps = 14/491 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + Sbjct: 3 DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133 D P++ + + LS A R Y + +N+ + VTGT+GK++ + Sbjct: 63 KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G +S +G TT S + + L+ L QG T ++E SSH Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL QHR+ +K A FTNL RDH+DYH + Y AK L+ E AII ADD Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240 Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + +A ++ G+++ V + + S D + L G Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+A +A+G A +L+ +L V GR E T + VDYAHT ++ Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ R EA+ A+ + DV++VAGKGHE IV N D Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478 Query: 486 CDIIREILGLI 496 + +LG+I Sbjct: 479 RVTVARLLGVI 489 >gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] Length = 493 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ LI + + P + + ++ D+R +Q G +F+A+VG DGH + Sbjct: 1 MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI +GA+ IV S + N P++ V+NT + +++ A YG + + + Sbjct: 56 DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + ++ IG I TTP I + L+ + Sbjct: 107 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L Sbjct: 167 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 226 Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A++ DD +E + A + I+ + V + + Sbjct: 227 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 284 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +SV G L G+F VYN L A A GI +++ LEK+ V GRF+ V Sbjct: 285 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 343 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ + Sbjct: 344 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 403 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I +++ G+P +R AI AIE DV+++AGKGH Sbjct: 404 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 463 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ K D + + L L Sbjct: 464 EDYQIIGR-TKHHFDDSEEAAKALAL 488 >gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] Length = 495 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 150/495 (30%), Positives = 228/495 (46%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L L+ F + + E++ DSR AG +F+A+ G++ DG +IPQAIAQG A+ Sbjct: 4 RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + ++ P++ +++ LS A Y + + + VTGT+GK++ Sbjct: 64 IAEAHGEAEEGEIRFVHGVPVIYLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +S +G + TT S + + L+ L ++ T ++E Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ ++ A FTNL RDH+DYH Y AK LF K A Sbjct: 184 VSSHGLVQGRVAALQFDAAVFTNLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLF 304 DD + ++R A + + V + + + F Sbjct: 242 DDEVGLKWLQRLPQACAVTMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G F V N L+A + + +L L V GR E + + VDYAH Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLEKLLATTNALMPVCGRMEVFSVTGKPT-VVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G++ VFGCGGDRD+GKRP+MG A AD ++TDDNPRSED Sbjct: 361 TPDALEKALAAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSED 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I +I+ GI + R EA+ I + DV++VAGKGHE I+ + Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKGHEDYQIIGSRRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG++ Sbjct: 481 Y-SDRLTVARLLGVM 494 >gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] Length = 471 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + D P+ Sbjct: 1 MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + E + + VTGT+GK++ + Q Q G ++ +G Sbjct: 61 IYLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TT S + + L+ L+ G T ++E SSHGL Q+R+ + A F Sbjct: 121 GNGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH +Y AK LF + AII ADD + + + +A + Sbjct: 181 TNLSRDHLDYHGDMASYEAAKWSLFAGHEVGQ--AIINADDDVGQRWLAQLPDAVAVTMQ 238 Query: 270 ----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G +G+++ V N V S D + L G F V N L+A +++ Sbjct: 239 GNLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L R G++ Sbjct: 299 GYPLAALLKSGSQLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALAAARLHCQGQLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA AD +VTDDNPR+E+P+ I A+I+ G+ + Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDPGRALVI 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +A+ +QDV++VAGKGHE +V N D + +LG+I Sbjct: 418 HGRAEAVTSAVMQAKQQDVVLVAGKGHEDYQLVGNRRLDY-SDRTTVARLLGVI 470 >gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] Length = 495 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494 >gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] Length = 493 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 148/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ +++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117 +A+AQG A++V + + + K +S A+ Y I Sbjct: 51 DKALAQGVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK+S + Q+ + +G D+ TT I L + L Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y AK LF Sbjct: 171 FAGKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293 + + DD + N ++ + + K Q T+ Sbjct: 231 DALRHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQATL 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D PL G F + N L A G+D + + L V GR E T Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DN RSEDP +I +II G+ + + +R+ AI+ + DV+++AGKGHE Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G + + + R++ Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488 >gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4] gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella loihica PV-4] Length = 488 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 149/499 (29%), Positives = 238/499 (47%), Gaps = 23/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ F + ++ ++ DSR I G +FVA+ G++ DG ++ Sbjct: 1 MHLCDLLAPWFHYAGGES-----------LSHLTLDSREIGQGSVFVAVPGHRVDGRDYV 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENIL 118 A++QGA A ++ + + + + + ++ LS AS + G+ ++ Sbjct: 50 DTALSQGAVAALIHTDDPAEHGKVSQDNGLR-IYFFQLQRQLSALASQLYVLGRDRIKLI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV + Q+ G + +G D+ TT PI + + L Sbjct: 109 GVTGTNGKTSVTQLIAQLSDGLGKPAAVMGTLGNGLWGQLVDSGNTTADPITVMRQLEDF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R+D + FTNL RDH+DYH + AY AK RLF Sbjct: 169 DRQGTAVCAMEVSSHGLVQGRVDAVPFDVAVFTNLSRDHLDYHGSMDAYGAAKQRLFRFS 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + DD ++ ++ G G +G I+ K+V T+ Sbjct: 229 SLSHGLINL--DDPVGRQWIQDKRCKGLVGFSIQGQEGAAIYTKEVKQHSQGVSATLVWP 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G F + N + A G G A +L + L V GR E T G Sbjct: 287 EGEAKIDSPLLGIFNLSNLVAALGALYLSGYAMAQLLTQVSSLKPVAGRMERF-TTQEGV 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +++E L+ +R G++ VFGCGGDRD+GKRP+M + A + AD +VT Sbjct: 346 TLVVDYAHTPDAIEQALRALRGHCRGKLWCVFGCGGDRDKGKRPLMARAAEENADCVMVT 405 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DN RSEDP I +++ G+ + + +R +AIR + + + D++++AGKGHET Sbjct: 406 SDNARSEDPMAIIQDVLAGLNKPQIALTQVDRQQAIREVVTLASNGDLILLAGKGHETYQ 465 Query: 474 IVTNGEKKMSVDCDIIREI 492 + G++ + + I Sbjct: 466 EIA-GKRLDYDERALAAAI 483 >gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] Length = 483 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 153/502 (30%), Positives = 235/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + ++++ +DSR ++ G +F A G DG L+I Sbjct: 1 MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 + + + Y + I + P + + + L A R + + + Sbjct: 51 ----EKAVASGAAAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106 Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175 VTGT+GK+++A + Q G S IG + TTP + L + + Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +G+ V +E SSH L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE Sbjct: 167 QYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + AII DD + +V +Q + + ++ + Sbjct: 227 RSELQW--AIINQDDDCQDLMSNVLKTHVKKVTYGMHQNCDVKAIQWNMDITGTEIEVKS 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+F +YN+L +A G + V++ + +L PGR E V + Sbjct: 285 PWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGRMEIVAQSPY- 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++ Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDPE I EI G+P + NR EAI A+ D++++AGKGHE+ Sbjct: 402 TSDNPRSEDPEIILNEIACGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + N K + D +++R ++ Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482 >gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] Length = 521 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 148/509 (29%), Positives = 224/509 (44%), Gaps = 33/509 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + PEL + + + DSR ++ G IF+A+VG + DG FI A+ Q Sbjct: 8 LGQWLPELALGKAASLVPG------SLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQ 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A+ V + Q P++ ++ LS A R Y + V T Sbjct: 62 GAAAVFVEADKEWQGVHWIGE--VPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTN 119 Query: 127 SSVASFVQQICQRSGL----SSFQIGPTSTISSFAQ-------------DNRLTTPSPIY 169 + +G+ S IG LTTP P+ Sbjct: 120 GKTTCSLLLAQLLAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVA 179 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L + L L + G + ++E SSH L Q R+ G+ FTNL +DH+DYH +Y A Sbjct: 180 LQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKA 239 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K L K A+ DDA+ K + + + + ++L+ + + Sbjct: 240 KAELLFMPGLKH--ALFNMDDAWVKALAAKTPAGVSAIGFSLQEPADVYLRDIHLHASGA 297 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-- 347 + + +F PL G F + N + G VL + L PGR + Sbjct: 298 SAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRMQPV 357 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + + ++ VDYAHT ++LE LK IR + RI VFGCGGDRD+ KRP+MG+IA Sbjct: 358 VVDADVQEIQVLVDYAHTPDALENTLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIAE 417 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464 L+D IVT+DNPRSEDP +I A+I+ G+ + +R +AI A++ D++++ Sbjct: 418 KLSDYVIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVLI 477 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKGHE I + D R L Sbjct: 478 AGKGHEDYQIFADQT-LPFSDSQQARLAL 505 >gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH 391-98] Length = 491 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 139/501 (27%), Positives = 227/501 (45%), Gaps = 26/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ + P + +I + +DSR + G +FV + G D H F Sbjct: 1 MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + I + P+++V +T + L++ A Y + + + Sbjct: 53 --------AEQAAAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + + +I + G + IG + I + TTP + L +A + Sbjct: 105 GITGTNGKTTTSHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 + V +E SSH LD+ R+ G FTNL +DH+DYH+T + Y +AK Sbjct: 165 VEENVNSAVMEVSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ + A V + K + T+ Sbjct: 225 GNSYHHNREKYAVLNNDDAATEAYIRSTAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G+F VYNAL A + G+ +++ LE L V GRFE V + Sbjct: 285 TPHESKKITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVV-DGGQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A AI Sbjct: 344 DYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +T DNPRSEDP+ I +++ G+ + +R +AI AI +DV+++AGKGHET Sbjct: 404 LTSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ E D ++ +E + Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483 >gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] Length = 486 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 139/503 (27%), Positives = 221/503 (43%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E+I E +I +DSR ++ G FV I G DGH F+ Sbjct: 1 MKLNQLLERLEYEVIQGSD-------EAEITTFINDSRKVEKGSAFVCISGAVVDGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + +GA A++V + + ++ V ++R L+L ++ +G + + + Sbjct: 54 EEVAQKGAAAVIVEREVEAPE-------DMTVIRVADSRYALALMSAAYFGYPADKMKII 106 Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLGRDHI + + + L Sbjct: 167 VEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGP---NEHKDFEDYKRCKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISV 295 L ++ I D E + + + V Sbjct: 224 LFQQCRLGIANVDDEYFEDVFSRATCRVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVS 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG+F VYN+L A +C + + + L+ + V GR E + + Sbjct: 284 GLMDFDVEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKALK-VANVKGRIEMIPVSDE- 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD++I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPARLVCLFGCGGNRSRERRYEMGEVSGRLADLSII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +I GI ++E +R EAI+ AIE + DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K + +IREIL Sbjct: 462 YQEIK-GVKYPMDERVLIREILE 483 >gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 495 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 166/505 (32%), Positives = 244/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ I DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0101] Length = 506 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 151/491 (30%), Positives = 230/491 (46%), Gaps = 21/491 (4%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + VS DSR + G +FV + G + DG +F PQAI GA V+ A + Sbjct: 16 VPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAVLAVIGRAAAEA 75 Query: 81 DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 A P+LVV + ++ + A+ + + + + + VTGT+GK++ ++ + Sbjct: 76 CPPADQD---PVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTTTHLIEHLA 132 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S G + + + TT L L+ + G ++E SSH LDQ Sbjct: 133 ASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAMEVSSHALDQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAY 252 R+ G + FTNL +DH+DYH + QAYF AK LF + A++ DD + Sbjct: 193 QRVSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATAVVNVDDPW 252 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ +R R + ++++ + + F PL G F + Sbjct: 253 GQQLAERLGGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSGPFQSPLLGRFNL 312 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------YVDYAHTS 366 N L A G + G+ A +L+ L VPGR E VG VDYAHT Sbjct: 313 MNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGSLPAVLVDYAHTP 372 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + LE LK R G++I VFGCGGDRD+ KRP+MG IA LAD +VT DNPR+EDP+ Sbjct: 373 DGLESALKACRPFAQGQLICVFGCGGDRDRTKRPLMGSIAARLADQVVVTSDNPRTEDPQ 432 Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I +++ GIP + +R AI + D++++AGKGHE I+ K Sbjct: 433 QILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKGHEDYQILGT-TKIHF 491 Query: 484 VDCDIIREILG 494 D + + L Sbjct: 492 DDREEAEKALR 502 >gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] Length = 489 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 131/502 (26%), Positives = 226/502 (45%), Gaps = 31/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ E+I ++ I + DSR ++ G +FV +VG + H FI Sbjct: 1 MKLEKLLNGFEYEIIGN--------KDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 Q I +GA AIV+S SL++ + V +TR L+L + + + ++ Sbjct: 53 DQVIEKGAHAIVISQDVSLKE-------GMTYIRVKDTRIALALLSCAYFNYPSKELKVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK+S + ++ I + +G IG T + TTP L + + + Sbjct: 106 GITGTKGKTSSSLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +E SS L +R+ GI+ G FTN+ DHI + A+ ++ Sbjct: 166 VEHDCEYCVMEVSSQALKMNRVAGIEFDYGVFTNISPDHIGP---NEHKDFAEYMACKKH 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ D E + S+ L + + ++ I+ + Sbjct: 223 LFDFCQVGLFNKDDEHFEEFTKDVPCKVLTYSIEKDSDLKALH-IELYNENGELGITFDT 281 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K + F +PG+F YNALVA +C I + + + L ++HV+ GR + + + Sbjct: 282 KGLINASFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVL-GRGQVMHVSP- 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH S E I+ + ++IVV+G GG R + +R G++ +I Sbjct: 340 DYSVLIDYAHNGVSFESIISTVEQYNPNKLIVVYGSGGKRSKTRRYESGEVVAKHGGYSI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR E I +I+ GI + +R EAI A++M K DV+++ GKGHE Sbjct: 400 LTADNPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T I + + + +++ E Sbjct: 460 TYMIGEDEVTRHFSETEVLEEY 481 >gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] Length = 495 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 221/502 (44%), Gaps = 22/502 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + +LI L I+ ++ DSR ++ +F I G DGH F A Sbjct: 1 MLATELAQLI-YLKKIEGNLSGVTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGT 123 +GA A V S + Q +TP++ V + + ++L A+ YG ++ VTGT Sbjct: 60 KGAVAFVASKSIKNQVG------DTPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGT 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++V + + ++ + IG I TTP + L + L G Sbjct: 114 NGKTTVTHMIDALLEKPNKPTALIGTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGG 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-- 240 +E SSH L R+ G+ FTNL +H+D H+T + Y +AK LF +L Sbjct: 174 ETCLMEVSSHALQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVG 233 Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + D ++ + + + + F + + Sbjct: 234 ENSKPKVAVLNADDEQFQMFEYSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQND 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL G F VYN L A + GI +L+ ++ V GR + V + + Sbjct: 294 ERYLVDMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQSV-DKGQDFQ 352 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AHT + LE +L ++ I G+II V G G+RD RP +G+IAL +D + T Sbjct: 353 VIVDFAHTPDGLENVLDSLAQIPHGKIITVVGHSGGNRDSSMRPELGRIALTKSDHVVFT 412 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+E I ++ + + R EAI A+++ + D++++AGKG E Sbjct: 413 ADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKGVEAY 472 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ + + +++ +LG Sbjct: 473 QIIGE-VEYPYNEIEVVESLLG 493 >gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 495 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ ++ + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] Length = 480 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 141/499 (28%), Positives = 218/499 (43%), Gaps = 30/499 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L I +S DSR ++ G I+ + G DGH FI Sbjct: 1 MRLSKLFKN---------------APTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI GA IV S + S + V++ ++ A Y K + + Sbjct: 46 DSAIKNGAVCIVHSKEL------LNMASGAVYIRVEDVNDAMNKVARIFYAKPSDKLKMY 99 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKS++ + ++ + + LTTP ++L L+ + Sbjct: 100 GVTGTNGKSTITNIIRDMINDKTPCGYIGTIAIKYGDIELQPNLTTPDALFLQSKLADMV 159 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ ++E SSHGL QHR+DGI FTNL DH+D+H T + YF AK LF+ L+ Sbjct: 160 RVGMKACALEVSSHGLAQHRVDGISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLV 219 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + +I+ DD + + + + V + + Q + G Sbjct: 220 KENGVSILNRDDEKYEAL--KDCSKARVVSYGINKEADYRAINIKMSSQGTQFDLVYSGH 277 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G F VYN L A G D ++E + V GR E + + + Sbjct: 278 MYPIKTNLVGNFNVYNLLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDCG-QPYNV 336 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT + +E +++ R+IT R+I VFG G RD KR + G++A D IVT Sbjct: 337 IVDFAHTPDGMEKMMQFGRSITMPGHRLIAVFGSAGKRDVHKRKVFGELADKYCDYIIVT 396 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+PR EDP++I +I GI + +R EAI AI + D +++ GKG E+ Sbjct: 397 EDDPRDEDPKEIADQIKSGIQNTLHVFVQDRYEAIHQAISSAQEGDTVLLLGKGDESFIY 456 Query: 475 VTNGEKKMSVDCDIIREIL 493 NG D +E + Sbjct: 457 RENGRAPWVGDNVAAKECI 475 >gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia coli] Length = 495 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR V T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-KVFTAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494 >gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] Length = 500 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 145/509 (28%), Positives = 232/509 (45%), Gaps = 32/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ F ++ NE++ DSR I+ G +F+A+ G + DG FI Sbjct: 2 MLLRDLLAPWFIY-----------SGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111 +A+ GA ++V + + Q + N + + +S A++ Y Sbjct: 51 DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110 Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIY 169 I+ +TGT+GK+S + + Q+ + +G D+ TT I Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAIT 170 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y A Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATA 230 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIH 286 K LF ++ DD + + ++ +G + K Sbjct: 231 KQSLFRFSTLGHG--LLNLDDPVGASWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDD 288 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ + PL G F + N L A G D + E ++ L V GR Sbjct: 289 QGVSTTLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRM 348 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E T + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ A Sbjct: 349 ERFTTAD-NITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAA 407 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 AD +VT DN RSEDP +I ++II G+ + + +RI AI+ + + D+++ Sbjct: 408 EQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLIL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +AGKGHET G + + + R++ Sbjct: 468 LAGKGHETYQE-AAGVRHNYDERALARQL 495 >gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] Length = 487 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 246/504 (48%), Gaps = 33/504 (6%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +D++Y +N + +N + DSR + +FVA+ G DGH + Sbjct: 1 MKLLKDILYGVGIVAVNGT-------TDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I A+ GA AI+ + + + + V N L++ AS YG + + Sbjct: 54 IDTALNAGANAIICET------MPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++++S + Q+ +++G + + TTP I + K+L+ Sbjct: 108 VGVTGTNGKTTISSLLYQLFKKAGYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +++ GV +E SSHG+ Q R++G+ FTNL DH+DYH+T Y + K LF+ Sbjct: 168 MNNAGVEFCFMEVSSHGIHQKRIEGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDG 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD +++ Y + + ++ Sbjct: 228 -LPKTAWALTNIDDKNGAVMLQNTKAKKQTYALKTYADFRAQILENQFSGQLLKID---- 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G+F YN L +G++ +L L +L V GRF++ + Sbjct: 283 --DNELWSKLIGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDGRFQYYISGK-NI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L I + +G I V GCGGDRD+ KRP+MG IA +++ + Sbjct: 340 TAIVDYAHTPDALKNVLNTINALRTGNEDVITVVGCGGDRDKSKRPVMGHIASEMSTKVV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E P +I E+ G+ + NR +AI+TA ++ +D++++AGKGH Sbjct: 400 FTSDNPRTESPSEILKEVEAGVEAQNTRKVLTIENREQAIKTACQLAQPKDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET TNG + D I++++L Sbjct: 460 ETYQE-TNGVRIDFDDYKIVKQLL 482 >gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] Length = 488 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 246/501 (49%), Gaps = 31/501 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK + + + IN + DSR +Q +F+AI G+ DGH +I Sbjct: 4 LKDILYKVNMKAVTGDTG-------VTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKN 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A QGA AIV + + + V++T++ L+ ++ Y E + + V Sbjct: 57 AENQGALAIVCEK------IPDEVINGVTYIEVEDTKRALAYISANYYDNPSEKLKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++A+ + + ++G + + + TTP I + L ++ Sbjct: 111 TGTNGKTTIATLLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMND 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GV +E SSHG+DQHR +K G FTNL DH+DYH+ Y + K R F+E LP Sbjct: 171 VGVEFCFMEVSSHGIDQHRTTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDE-LP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+ DD + +++ + + + + ++ D Sbjct: 230 ASAFALTNVDDKNGEIMLQNTKAKKHTYALKSFADYKAQILENNFTG------LLLKVDD 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F YN L + +G+ + +L + +L+ V GRF++V + Sbjct: 284 QELWTKLIGNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQYVISEKEKITAI 343 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L+ +L+ I +I + I V GCGGDRD KRP MG IA L+ + T Sbjct: 344 VDYAHTPDALKNVLETINSIRTRNEELITVVGCGGDRDTTKRPKMGHIASALSTKVVFTS 403 Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP+KI E+ G+ + NR +AI+TA +M + D++++AGKGHET Sbjct: 404 DNPRTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKGHETY 463 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V NGE+ D I+ E L Sbjct: 464 QEV-NGERVDFDDLKIVNEFL 483 >gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] Length = 471 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 236/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D P+ Sbjct: 1 MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + + ++ VTGT+GK++ + Q + G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + LS L QG T ++E SSHGL QHR+ ++ A F Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E + + VDYAHT ++LE L+ R SG++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKPAVVVDYAHTPDALEKALQAARLHCSGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG + Sbjct: 418 EGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDY-SDRVTVARLLGAV 470 >gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 3594-74] Length = 471 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ + V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E + + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFTVPGKPT-VVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E128010] Length = 471 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] Length = 483 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 192/500 (38%), Positives = 271/500 (54%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I V++DSR ++ G+ F A+ G+ DG + Sbjct: 1 MKLSQLLGE----------AATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYA 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+GA +V A + + P++VV + R L+ A+R Y + P + AV Sbjct: 51 ADARARGASVVVAPRAAEV---------SLPLVVVPDVRASLAHAAARFYPRQPRIVAAV 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGTSGKSSV F++QI G + +G I LTTP P+ L + L L + Sbjct: 102 TGTSGKSSVVDFLRQIWIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCA 161 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASS G+DQ RLDG++L G+FTN RDH+D+H+ + YF AKMRLF+ LL Sbjct: 162 GGVTHLAMEASSLGIDQRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQ 221 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I AD A ++ V G + VG +G+ I L V ++T+ G+ Sbjct: 222 TGQTAVIDADSAVAERVAAVCAARGLALFDVGAKGRAIELLSVAPSALATRLTLRHAGET 281 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +D PL G FQ+ NALV+AG+ IA G V L L PGR E +G G ++ Sbjct: 282 YDVDLPLAGGFQISNALVSAGMAIASGEAPGRVFAALASLRGAPGRLELIGQRD-GAPVF 340 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L+ +L R + GR++VVFG GGDRD+GKRP+MG+IA ADI +VTDDN Sbjct: 341 VDYAHKPDALDKVLATARELAKGRLVVVFGAGGDRDKGKRPLMGEIAARAADIVVVTDDN 400 Query: 420 PRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 PRSE+P + A G E G+R AI TAI L D L+VAGKGHE+ I Sbjct: 401 PRSEEPAMIRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKGHESGQI 460 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + + D ++ L Sbjct: 461 IGD-QVLPFSDRAVVEAALR 479 >gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] Length = 491 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 143/501 (28%), Positives = 228/501 (45%), Gaps = 28/501 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L+ L+ K + + ++ I ++ DSR + G +F I G DGH F Sbjct: 3 QLRSLLNK-----LPSYEMVGDNNIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFAT 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QAI +G AIV ++ P++ V ++++ +++ +S Y L + Sbjct: 58 QAIEKGTVAIVAEKDLNVA---------VPVIKVTSSKRAMAIISSAFYDYPSSK-LHLI 107 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYL 177 G +G + + I + + G T+ +D TTP + L K S + Sbjct: 108 GVTGTNGKTTTTHLIEKILRDAEKNTGIIGTMYMKYKDKEVAVNNTTPESLVLQKGFSTM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 +GV V++E SSH L+ R+ G FTNL +DH+D+H+T + Y A +L Sbjct: 168 VQEGVNVVTMEVSSHALELGRVHGTHFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + K P + D + ++++ A + + K+ + Sbjct: 228 GNQFSDKSQPVAVLNRDDDTFDLLETMTAAPIISYGI-KGNADLKASKIQLHEEGTSFNM 286 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S+ + + G F VYNAL AA GI + E L + V GRFE V Sbjct: 287 SISNESCSVSMKMAGTFSVYNALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERV-ELE 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +SL+ +L+ I+ G++ VV GCGGDRD+ KRP M IA +L+D Sbjct: 346 EDFHVIVDYAHTPDSLKNVLETIKEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFV 405 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T DNPRSEDP I ++ G+ G + R +AI AI K +V+++AGKGHET Sbjct: 406 YLTSDNPRSEDPVSILKDMESGMKGSSYKVIVERRDAIYEAIRQAKKDEVILIAGKGHET 465 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 + E D + +E Sbjct: 466 YQTIG-KENHFFDDRLVAKEA 485 >gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida GB-1] gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1] Length = 496 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 235/490 (47%), Gaps = 22/490 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ AY Sbjct: 7 SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAV----AY 62 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 Q + + P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 63 EEQGATVLPLTEVPLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G IG T Q RLTTP PI + L L QG V++E SSH L Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHAL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ ++ TNL RDH+DYH + +AY AK +LF + + DDA+ + Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDAFGR 240 Query: 255 EVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + ++ + + TI + L Sbjct: 241 RLAADFARRPSVDHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQL 300 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N L A +A+ +L+ +LH GR + +G + + VDYAHT Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLHGPVGRMQRLGGGDKPL-VVVDYAHTP 359 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+EDP+ Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQ 419 Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I +I G R EAI I DV+V+AGKGHE + NGE+ Sbjct: 420 RIFDDIRPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKGHEDYQEI-NGERHDF 478 Query: 484 VDCDIIREIL 493 D + L Sbjct: 479 SDLTEAEKAL 488 >gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 550 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ LI + + P + + ++ D+R +Q G +F+A+VG DGH + Sbjct: 58 MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI +GA+ IV S + N P++ V+NT + +++ A YG + + + Sbjct: 113 DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + ++ IG I TTP I + L+ + Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283 Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A++ DD +E + A + I+ + V + + Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +SV G L G+F VYN L A A GI +++ LEK+ V GRF+ V Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ + Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I +++ G+P +R AI AIE DV+++AGKGH Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ K D + + L L Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545 >gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 510 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 231/479 (48%), Gaps = 18/479 (3%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + ++ DSR Q G +F+A+ G++ G +A+A+GA A++ A A Sbjct: 26 GLDVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALARGAVAVLWEPA---PGVEA 82 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGL 142 + P + V + L A R +G ++ VTGT GK+SV+ F+ Q + Sbjct: 83 PVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDGKTSVSQFLAQTLYQESG 142 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG + TTP + L + L+ L +GV + +E SSH L Q R++G Sbjct: 143 RCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYTVMEVSSHALVQGRING 202 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 L TNL RDH+DYH + +AY AK RLF P AI+ DDA+ +++ Sbjct: 203 AALDIAVLTNLSRDHLDYHDSMEAYAEAKARLFRW--PGLETAILNLDDAFGRKLAAELA 260 Query: 262 NAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++L G + + + V + ++ L G F V+N L Sbjct: 261 EREVQILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPWGSGRLETGLLGAFNVHNLL 320 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G+ LE L + VPGR E + +G + VDYAHT +L +L+ + Sbjct: 321 AVLAALLQLGLSLTDALERLTHVRTVPGRMERF-SGGKGATLVVDYAHTPAALAQVLQAL 379 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR+ VFGCGG+RD GKRP+M + + AD ++T DNPR EDP+ I E++ G Sbjct: 380 RMHCEGRLWCVFGCGGNRDPGKRPLMARASEQFADRVVLTSDNPRHEDPQDIAREVMTGF 439 Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++ +R A+ A D+++VAGKGHETV IV + E++ D D+ R + Sbjct: 440 ERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGKGHETVQIVGD-EQRPFSDRDLARRL 497 >gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] Length = 524 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 139/502 (27%), Positives = 227/502 (45%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E + + ++ ++ +DSR ++ G +F I G DGH + Sbjct: 38 MKLTKLLERVEYECV-------QGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYA 90 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + +GA + + + ++ V ++R ++L A+ YG E ++ Sbjct: 91 AEVAQKGA-------GVLVVQDDVQVPGDVTVIKVADSRYAMALIAAAWYGHPAEKLKVI 143 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ I + +G IG + I TTP + K + + Sbjct: 144 GITGTKGKTTTTYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEM 203 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SS GL HR G G FTNL DHI + + + Sbjct: 204 AEAGCDCVVMEVSSQGLMLHRTVGFTFEIGIFTNLEPDHIGP---AEHENFEDYLRCKAM 260 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISV 295 L K+ I+ D E + H G + F + V Sbjct: 261 LFKQCRHGIFNADDAHLEAILEGHTCDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVT 320 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 ++F +PG+F +YN+L A +C G++ ++ L+K V GR E + + Sbjct: 321 GKRNFFVEIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAKV-KGRIEMIKVSDE- 378 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ GR++ VFGCGG+R + +R MG+++ AD I+ Sbjct: 379 FTLMIDYAHNAMSLESLLTTLKEYNPGRLVCVFGCGGNRSRARRFEMGEVSGKYADFTII 438 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+PE I A+I GI +I+ +R EAI AI DV+V+AGKGHE Sbjct: 439 TSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKGHED 498 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K + +I+EIL Sbjct: 499 YQEIC-GVKHPMDERVLIKEIL 519 >gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] Length = 496 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 142/499 (28%), Positives = 245/499 (49%), Gaps = 21/499 (4%) Query: 8 YKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + ++I+ + + + I +++ DSR G +F+ +VG DGH +I +A + Sbjct: 2 ERTLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAAS 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 GAEA++V ++ V +T++ ++ A Y + + + +TGT Sbjct: 62 LGAEAVLVEKDVP-------PVPGLVMIRVKSTQETMTELAPWFYDYPAQKMRMIGITGT 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ + ++ + +G IG + + + + TTP + L + L ++ G Sbjct: 115 NGKTTTTNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGC 174 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +V +E SSH L +R+ GI+ + TN+ +DH+D+H+T + Y AK LF L Sbjct: 175 DYVVMEVSSHALALNRVAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRK 234 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + +V++ G + ++ + ++++ + D Sbjct: 235 KGKTAIFNMDDASSPLIMNRVKTKVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGNMD 294 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GEF VYN + A +A G+ ++ L+ VPGRF+ + + VD Sbjct: 295 LRLHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAGQ-PFTVIVD 353 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + L+ +L+ R IT GR+ VFGCGGDRD KRPIMGK+AL+LADI +VT DNPR Sbjct: 354 YAHTPDGLDNVLRTARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPR 413 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 SEDP+ I +I G +R EAI+ AI +DV+++AGKGHE I+ Sbjct: 414 SEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQIL 473 Query: 476 TNGEKKMSVDCDIIREILG 494 + D +++R+ Sbjct: 474 KD-RTIHFDDGEVVRDFFR 491 >gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] Length = 471 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] Length = 495 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 230/480 (47%), Gaps = 19/480 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I V DSR I+ G +FV I G D H FIP GA A++ + + Sbjct: 23 VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +L V + L + Y ++ +TGT+GK++ + V+ I + +G Sbjct: 77 AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TTP + + + L+ + ++G+ V +E SSH LDQ R+ GI+ Sbjct: 137 LVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHN 262 FTNL +DH+DYH+T + Y AK RLFE + A A + + RAH Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGAVMRAHT 256 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + Q + + V + + + ++ + GEF VYN L AAG Sbjct: 257 TCPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAAGAA 316 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A GI ++ LE VPGRFE V + VDYAHT + +E +L+ R +T G Sbjct: 317 RAEGIGYDVIRAALEGFTGVPGRFELVRAGQ-DFSVIVDYAHTPDGMENVLRTARAVTRG 375 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436 RIIVVFGCGGDRD+ KRPIMG+I ++AD+ +T DNPR+EDP I E+ G Sbjct: 376 RIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEVEAGALPVLGG 435 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + + +R AI A+ D +V+ GKGHET I+ G D + E + + Sbjct: 436 KPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTI-HFDDRETAAEAIRSV 494 >gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] Length = 479 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 142/503 (28%), Positives = 240/503 (47%), Gaps = 37/503 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+D D E ++ E++ +S+ + G IF AI G K DG+ FI Sbjct: 1 MKLKDFFNTD---------------SEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+++GA A+V + + P VD+ ++ A + Y +++ + Sbjct: 46 DDAVSKGAVAVVSTEPAKKKYP-------VPYFQVDDIDLAMAKAAVKFYKNPSDDMFFI 98 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 +TGT GK+S++ ++ I +G+ IG + TTP+ +YL + Sbjct: 99 GITGTKGKTSISYLLESIFNEAGIPCSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDK 158 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + S G V +E SSH L+ R+ G+ FTNL RDH+D+H+ + YF AK +LF+ Sbjct: 159 MRSAGTKVVIMEVSSHALELKRVFGLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDS 218 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L+ PA + + ++ A + + K ++ Sbjct: 219 LIENSKPAKTAIVNIDDQYGLRLADKIKAKTTLIPVSLVEAENVKESLNG------VTFS 272 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+ +YNA+ A +A G+D L+ + KL +PGR + V + Sbjct: 273 YKGESASINLLGKHNLYNAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRV-NKGQPF 331 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VD+A+T+ SL + + +G II VFGCGGDRD+ KRP+MG A + ++T Sbjct: 332 YVFVDFAYTTESLMKAYETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHVLLT 391 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +DNPR+ED ++I +I++G+ + +R AI+T I + + D+L++AGKGHE Sbjct: 392 NDNPRTEDQQQIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKGHEDYQ 451 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ G+ D + L + Sbjct: 452 ILA-GKTIHFSDRETAETELEKL 473 >gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] Length = 483 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 145/478 (30%), Positives = 235/478 (49%), Gaps = 15/478 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + I +E + + DSR I+ G IFVA+ G DGH +I QA+ GA+ I+VS Sbjct: 9 EYEILKDVVKEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKK 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + + + R+ L + AS Y + + + T + Sbjct: 69 IEAVFP-------VKYIWIKDLRRKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIE 121 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + + K +G+ ++ +E SSH L Sbjct: 122 SILGSDKTARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALA 181 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D ++ FTNL DH+D+H+T + YF AK +LF + + D Sbjct: 182 LGRVDMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG- 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 KR + + + + K + + Q+V I+++ + G + VYN Sbjct: 241 --KRLSSEFGGISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNV 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + +GI+ ++L+ +++L PGR+E V + VDY+HT ++LE ILK+ Sbjct: 299 LGALSIALLLGIERDIILDKIKELKGAPGRYELVNCGQ-DFTVIVDYSHTGDALENILKS 357 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G+II VFGCGGDRD KR +MG+IA L+DIAIVT DNPR+EDP KI +++ G Sbjct: 358 INELKKGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEG 417 Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + I + +R AI A+++ +D++++AGKGHET I+ +K D +I R Sbjct: 418 MKGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474 >gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] Length = 499 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 230/506 (45%), Gaps = 27/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ Q N+++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +A+ GA A++V + + Q I +R+ ++ A R H Sbjct: 51 EKALDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110 Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170 + +TGT+GK+S + + Q+ G + +G D+ TT I L Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y AK Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230 Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LF + A A +K G+Q + K Sbjct: 231 QSLFRFNTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 T+ + + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 SATLVWPEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MGK A Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DN RSEDP +I +II G+ + + +RI AI+ + + DV+++AG Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHET G + + + R++ Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494 >gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato Max13] gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato K40] gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] Length = 487 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G R +AI I DV+V+AGKGHE + +G+++ D Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471 >gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 503 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 150/500 (30%), Positives = 243/500 (48%), Gaps = 16/500 (3%) Query: 11 FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL + I + ++ I+ +S DSRHI G +F + G K DG +F +A+A GA Sbjct: 5 LHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A V+ + +D + + +V D ++ AS + + I + VTGT+GK+ Sbjct: 65 AAVIGEEAAQKDPPS--NEDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ +C++SG++S G + ++ TT L L+ + G Sbjct: 123 TTTYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGV 182 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R+ G FTNL +DH+DYH++ +AYF +K LF+ L ++ + Sbjct: 183 MEISSHALDQRRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCS 242 Query: 247 YADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ K A + + L + + + + Sbjct: 243 VVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQG 302 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F+ L G F + N L A G+ I G+ +L ++ VPGR E + + V Sbjct: 303 PFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKVEGDLPVVLV 362 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + L+ L +R+ SGR+ VFGCGGDRD+ KRP+MG IA AD +T DNP Sbjct: 363 DYAHTPDGLKNALIALRSFGSGRLFCVFGCGGDRDRSKRPLMGAIASKFADHVTLTSDNP 422 Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+EDP++I +++ GI I + +R AI+ AI D++++AGKGHE I+ Sbjct: 423 RTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKALPGDIVLIAGKGHENYQILGL 482 Query: 478 GEKKMSVDCDIIREILGLIL 497 + D +I ++IL L L Sbjct: 483 ETIE-FDDREIAKKILHLKL 501 >gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 515 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 149/499 (29%), Positives = 227/499 (45%), Gaps = 26/499 (5%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + +I ++ DSR + F+AI G++ DG FIPQAI+ GA I+ + Sbjct: 14 LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDD 73 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 S +R ++ I+ + + LS A+ Y + + +AVTGT+GK+S + Q Sbjct: 74 SEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133 Query: 136 ICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + G S IG + TTP I + L+ V H + E Sbjct: 134 LKDALGTRSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAFE 193 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSH L Q RL +K FTNL RDH+DYH T + Y AK L + K Sbjct: 194 ASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQPGLKAVVLNAND 253 Query: 249 DDAYSKEVMKRAHNAGCR------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 D++ + + Q + + Sbjct: 254 DESNKWDNVADNAITRIWTGIDESADGALFRAHNNPQSRHCFATNASYHSGGCSFELVSS 313 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 PL G+F + N L A G +A G V++ + + VPGR E Sbjct: 314 WGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFPVPGA-A 372 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +L + + T+G++ VFGCGGDRD GKRP+MG+ A AD ++T Sbjct: 373 NLVVDYAHTPDALEKVLLSAKFHTAGKVWCVFGCGGDRDTGKRPLMGQAAEAGADAIVIT 432 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DN RSEDPE I +II G+ + +R +AIR + +K D+++VAGKGHE Sbjct: 433 TDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSDIIIVAGKGHEDYQ 492 Query: 474 IVTNGEKKMSVDCDIIREI 492 I+ + +K + ++ + Sbjct: 493 IIGD-KKTNYNERAVVARL 510 >gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. ORS278] gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Bradyrhizobium sp. ORS278] Length = 486 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 209/498 (41%), Positives = 279/498 (56%), Gaps = 22/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ +Q + P +++ +++DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLHDLLG-------DQAGLDPRVAA-VEVSGLAADSRAVRPGDLFFALSGTKTDGTRFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ + + P + + N R+ L+L ASR++ + P I AV Sbjct: 53 A-------AAVAAGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI Q G ++ IG IS LTTP PI L + + ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEITQ 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH Y NAK+RLF +L+P Sbjct: 166 DGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVP 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295 PA+I AD S EV+ A G R+++VG G I L QQ+ + Sbjct: 226 PGGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQH 285 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ PL G FQ+ NALVAAGL I G D V E LEKL GR E VG G Sbjct: 286 CGRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVG-EHNG 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I++DYAH ++L L +R +++VVFG GGDRD GKRP+MG+IA AD IV Sbjct: 345 APIFIDYAHKPDALAKALHALRPYAQRKLVVVFGAGGDRDSGKRPLMGEIAAAGADRVIV 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSE+P IRA I+ PG E G+R EAIR AI L D LV+AGKGHET I+ Sbjct: 405 TDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKGHETGQII 464 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + + + L Sbjct: 465 GD-TVLHFSDHEAVADAL 481 >gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] Length = 495 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 239/485 (49%), Gaps = 15/485 (3%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ + I + DSR++Q G +FVA+ G DG ++ QA A GA A +V Sbjct: 16 LMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALV 75 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131 ++ P +V+ R L A R Y + AVTGT+GK++V+ Sbjct: 76 EDELPGEEPP------LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAVTGTNGKTTVSQ 129 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q+ + +G IG + QD+ TTP I + + L+ + Q V VS+E S Sbjct: 130 LFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAGQAVPFVSMEVS 189 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH LDQ R++G+ + + FTNL RDH+DYH ++Y AK RLF AI+ +DD Sbjct: 190 SHALDQGRVNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFAF--ESLRTAILNSDD 247 Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +S + R + + L + Q+ + + PL G+ Sbjct: 248 PFSDVLAGRMSLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLESPWGNGTLNCPLLGK 307 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N L A + G+ V+ E L VPGR E + ++ G + VDYAHT ++L Sbjct: 308 FNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIH-SAAGPLVVVDYAHTPDAL 366 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L +R GR+I VFGCGGDRD+GKRP+M + +AD A++T DNPRSEDP I Sbjct: 367 RHVLIALREQCKGRLIAVFGCGGDRDKGKRPLMAEAVAAIADRAVITSDNPRSEDPLAII 426 Query: 430 AEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 A+I + G + +R +AI AIE +D +++AGKGHE I+ + D + Sbjct: 427 ADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGKGHEDYQIIGDQRFT-FSDSAV 485 Query: 489 IREIL 493 +++L Sbjct: 486 AQQVL 490 >gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] Length = 471 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 495 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 166/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E + + Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-SAAG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KATVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG+I Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494 >gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] Length = 487 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 152/499 (30%), Positives = 237/499 (47%), Gaps = 23/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ + + ++ + DSR + G +FVAI G + DG +I Sbjct: 1 MKLAELL---------TMLPTSFSVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +A + + R ++ R+ LS A +G E + + Sbjct: 52 DAAI----DAGAAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFGHPSEKMNLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV + Q+ + G+ + IG T + R TTP + + + L+ L Sbjct: 108 GVTGTNGKTSVTHIMAQLAKALGMEAAVIGTTGSGLIGRLLPERHTTPDAVTVQQRLATL 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G V++E SSH L Q R++ + A + TN+ RDH+DYH T + Y AK RLF + Sbjct: 168 LAEGAELVAMEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADF 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ADD + L+ + V +++ +G Sbjct: 228 GVQNRVVN--ADDDTLSHWQQDDLADLWVSLNASPNEPCLQATGVQFHEQGSVFSLNWQG 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F VYN L A + + + A + + +L VPGR E N Sbjct: 286 ESCVVETPLLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAFHNNQSPL- 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L +L +R GR+ VFGCGGDRD+GKRP MGK+A D AD+ +VTD Sbjct: 345 VVVDYAHTPDALHQVLSALRLHCKGRLWCVFGCGGDRDRGKRPQMGKVAADYADVVVVTD 404 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E E+I +I+ GI + R EA+ A++ K DV+++AGKGHE + Sbjct: 405 DNPRTEPAEQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKGHEDYQV 464 Query: 475 VTNGEKKMSVDCDIIREIL 493 + + ++ E L Sbjct: 465 IGTQRIDY-NERAVVSEWL 482 >gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] Length = 503 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 175/513 (34%), Positives = 247/513 (48%), Gaps = 37/513 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DLI PE +R I ++ DSR ++ G++FVAI G + DGH FI Sbjct: 3 NLKDLIA-VLPE------KTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQ 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120 +A+ A ++ A P + V ++R L L AS YG ++ V Sbjct: 56 EAV--------ARGAAAVVGERAPAVEGVPYVQVPSSRTALGLLASAFYGHPSARLVLVG 107 Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 TGT+GK++ V+ + + +G + IG + I + TTP L K L+ + Sbjct: 108 VTGTNGKTTTTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMR 167 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+THV +E SSH L R+ G G FTNL +DH+D+H + + Y AK RLF L Sbjct: 168 DAGLTHVVMEVSSHALTLQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLG 227 Query: 239 PKESP---------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 E P A+I ADD + + R+ Q + + V Sbjct: 228 RNEIPGTVKPGPKAAVINADDPWGTFMADRSSAPVITYGI--RQAADVTARDVVVEPGGV 285 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + L G F VYNAL AAG +A+GID A V LE L VPGR E + Sbjct: 286 RFVLGTRDGEVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGRLERI 345 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + VDYAHT + LE +L +R + GR++ VFGCGGDRD+GKRP MG IA Sbjct: 346 DRG-QPFTVLVDYAHTPDGLENVLSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAAR 404 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD ++T DNPRSEDPE I +I G+ + R AIR +E+ DV+V Sbjct: 405 LADYTVLTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVV 464 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AGKGHE I + D ++ L + Sbjct: 465 IAGKGHEDYQIFAD-RTIHFDDREVAATALEAM 496 >gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 487 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 157/476 (32%), Positives = 232/476 (48%), Gaps = 14/476 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + AL+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF + DD + Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G R +AI I DV+V+AGKGHE + +G+++ D Sbjct: 417 RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471 >gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 153-1] Length = 471 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli EPECa14] Length = 471 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] Length = 490 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 142/501 (28%), Positives = 235/501 (46%), Gaps = 28/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ + L + + +I VS+ S ++ G +F+ G K D H I Sbjct: 1 MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEII 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ I +GA A+VV L + P + V ++R F + AS + + +++L Sbjct: 56 PEVIEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFDEPWKDVLTF 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T + V + G + I + + +TTP I + A+ Sbjct: 107 GVTGTNGKTTTTVMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKEN 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L Q R++G++ G FTN+ RDH+D+H T + Y AK+ LF+ L Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + ++ + L + + + Sbjct: 227 KDDGIAILNES-------LADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPD 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 G+F YNA A +G D + LE V GRFE G G Sbjct: 280 GLLRVFTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDPE+I ++I GI ++ +R EAI TA+ + N+ D +V+AG+GHE Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ +K D +++ EI+ Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480 >gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] Length = 495 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 165/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR +G +FVA++G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + + + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + LS L+ Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ ++ A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATLAAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + + Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L +L V GR E Sbjct: 292 SSWGNGEIDSRLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFA-APG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+ + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D +LG++ Sbjct: 471 YQIVGNRRLDY-SDRVTAARLLGVV 494 >gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] Length = 509 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 143/495 (28%), Positives = 229/495 (46%), Gaps = 28/495 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + I + DSR I+ ++FVA+ G+ DGH FI +AI GA+ I+ Sbjct: 14 KEGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDT--G 71 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 S+ + V+ RK L + AS YG +P++ + + G +G + + + Sbjct: 72 QYQSASDVTFIQVEGIRKKLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSFFLENILEK 130 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++ + I + TTP + L K + G + +E SSH L+ R+D + Sbjct: 131 TARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVDML 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K + FTNL +DH+D+H+T + YFNAK ++F L ++ + + K Sbjct: 191 KFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIYLE 250 Query: 263 AGCRVLS----------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + K + + F L Sbjct: 251 NNAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTENVYRFEIDL 310 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 GE+ +YN L +++GI+ +++ LE + VPGRFE + N RI VD+AHT Sbjct: 311 VGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETIK-NDLDVRIVVDFAHTD 369 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + L + K ++ IT R+I +FG GGDRD KRP M + A+ +D I+T DNPR+E+P Sbjct: 370 DGLLNVGKTLKQITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTENPT 429 Query: 427 KIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 KI A+I G ++ +R AI+ ML K D L++AGKGHET I+ E Sbjct: 430 KILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGKGHETYQIIGT-E 488 Query: 480 KKMSVDCDIIREILG 494 K D +I++E L Sbjct: 489 KIHFDDREIVKEALE 503 >gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 534 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 148/511 (28%), Positives = 248/511 (48%), Gaps = 27/511 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL DL+ L + + +I+ +S DSR + G +F I G K+DGH ++ Sbjct: 33 KLADLVKPL-------LKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLE 85 Query: 62 QAIAQGAEAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +++G A+V S + + + P+++V ++RK ++ AS+ Y +++ Sbjct: 86 DVLSKGVSAVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRVT 145 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSY 176 T K + S + G TI++ D TTP P+ L + L Sbjct: 146 GVTGTKGKTTTVNLIDKLLSEGKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNELLGR 205 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + G +HV++E SSH + Q R+ G+ L +TNL +H+DYH Y K R+F Sbjct: 206 IENSGASHVTLEVSSHAISQLRIAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSF 265 Query: 237 LLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 K A+I DD Y+ ++++ + + + Sbjct: 266 QGLKPEKNDKPKLAVINLDDKYASYMLEQPAVQVLTHGFDENAHVKGKI--INTAETFTE 323 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + I+ +F PL G+F YN L A + + GI ++ + LE+ +PGRFE + Sbjct: 324 LKITSPWGNFTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILEQPINIPGRFERID 383 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VD+AHT++SL+ +L+++R + SG+I VVFGCGG+RD+ KRP MG+ A DL Sbjct: 384 LGQE-FTVVVDFAHTTDSLQEVLQSLRQMVSGKIGVVFGCGGERDKSKRPKMGRAASDLG 442 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D +T DNPR+EDP+KI +I+ G + +R +AI ++ + D +++A Sbjct: 443 DKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLIA 502 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKGHE + NG+ D +I RE L + Sbjct: 503 GKGHEATQEI-NGKVINFDDREIAREKLKKM 532 >gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] Length = 490 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 169/491 (34%), Positives = 249/491 (50%), Gaps = 14/491 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + Sbjct: 3 DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133 D P++ + + LS A R Y + +N+ + VTGT+GK++ + Sbjct: 63 KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q Q G +S +G TT S + + L+ L QG T ++E SSH Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL QHR+ +K A FTNL RDH+DYH + Y AK L+ E AII ADD Sbjct: 183 GLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240 Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + +A ++ G+++ +V + + S D + L G Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L+A +A+G A +L+ +L V GR E T + VDYAHT ++ Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ R EA+ A+ + DV++VAGKGHE IV N D Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478 Query: 486 CDIIREILGLI 496 + +LG I Sbjct: 479 RVTVARLLGGI 489 >gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] Length = 503 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 146/493 (29%), Positives = 220/493 (44%), Gaps = 12/493 (2%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + E+ QL + P + + ++ + G +F A+ G + G + QA +G Sbjct: 14 SRGLVEVARQLGVRPPPV-DPSVTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERG 72 Query: 68 AEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 A A++ A + D + P +VVD+ R+ L + L+ HP + G +G Sbjct: 73 AVAVLTDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLHD-HPTSAFTTLGVTGT 131 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 + G + IG T + LTTP L + + + V Sbjct: 132 QGKTTTTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVC 191 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH L + R+DG F NLGRDH+D+H YF+AK LF A+ Sbjct: 192 AMEVSSHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFTP--DHARRAV 249 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DD + + ++ R + G + + G + D P Sbjct: 250 VNVDDDHGRRLLDRTDLPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVP 309 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG F V NAL G D A + + VPGR E V VDYAH Sbjct: 310 LPGRFNVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMERVDRGQ-PFTAVVDYAHK 368 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++ +L +R +T GR+++V G GGDRD GKRP+MG+ A AD+ +VTDDNPRSE P Sbjct: 369 PDAVTAVLTALRPVTPGRLVMVIGAGGDRDHGKRPLMGEAAARHADLVVVTDDNPRSERP 428 Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 IRA+++ G +E G+R EAI A+ D +VVAGKGHE + +G Sbjct: 429 AAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKGHEQGQEI-DGVVH 487 Query: 482 MSVDCDIIREILG 494 D ++ E+LG Sbjct: 488 PFSDRAVLEELLG 500 >gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UM146] gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 110-3] Length = 471 Score = 306 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] Length = 495 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 167/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L L+ + Q ER + E++ DSR AG +FVA+VG+ DG FIPQAIAQG AI Sbjct: 4 RNLRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAI 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSV 129 + + +D + P++ + + LS A R YG+ ++ VTGT+GK++ Sbjct: 64 IAEADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q Q G +G + TT S + + L L+ +G T V++E Sbjct: 124 TQLLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R+ + +A FTNL RDH+DYH Y AK RLF E A Sbjct: 184 VSSHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + +A L + G+++ ++V + I Sbjct: 242 DDEVGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHS 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L GEF V N LVA +A+G + +L V GR E + + VDYAH Sbjct: 302 RLMGEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKPT-VVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G++ +FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+ Sbjct: 361 TPDALEKALLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEE 420 Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I +I+ G+ R EA+ AI QDV++VAGKGHE +V N Sbjct: 421 PRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKGHEDYQLVGNRRLD 480 Query: 482 MSVDCDIIREILGLI 496 D + +LG++ Sbjct: 481 Y-SDRVTVARLLGVV 494 >gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] Length = 471 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 223/472 (47%), Gaps = 10/472 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +F+AI G++ DG +I QAIAQG A+V + + P+ Sbjct: 1 MTLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + +++ LS A Y ++ VTGT+GK++ + Q Q G +S +G Sbjct: 61 VYLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TT S + + L+ L Q T ++E SSHGL Q R+ + A F Sbjct: 121 GNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRV 267 TNL RDH+DYH ++Y AK LF K + + + + + + Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQIINADDDVGLKWLQRLPQACAVSMEQR 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + +QG ++ V + + + PL G F V N L+A + + Sbjct: 241 IPEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTMDY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +LE L V GR E + + VDYAHT ++LE L R G++ V Sbjct: 301 SLEQLLEASSSLSPVCGRMEVF-SAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FGCGGDRD+GKRP+MG A + AD ++TDDNPRSE+P I +I+ GI + Sbjct: 360 FGCGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILDSSRVLAIPG 419 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ ++I N DV+V+AGKGHE I+ + D + +LG++ Sbjct: 420 RAEAVTSSIMQANADDVIVIAGKGHEDYQIIGHRRLDY-SDRLTVARLLGVL 470 >gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 489 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 131/473 (27%), Positives = 212/473 (44%), Gaps = 22/473 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++ DSR +Q +F+ I G DGH + +A+ GA IV + Sbjct: 23 ITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGATVIVTER-------LLQLDGE 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V NT + L + A++ + + ++ VTGT+GK+SV+ + I G S Sbjct: 76 IAQVIVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHNILIGLGEKSALS 135 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + ++ TT + + + S+G + +E SSHGL RL G+ Sbjct: 136 GTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSHGLALGRLAGVDYDV 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL DH+D+H T + Y N K + L K ++ ADD +S+ Sbjct: 196 AVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSERYAGMTPYP 255 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + Q + F L GEF +YN L A + Sbjct: 256 IWTYGLHN--NAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIYNVLAATAVFY 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381 A G +++E +E L V GR E + + +I++DYAHT +++E + Sbjct: 314 ARGFPIEVIIEQIEMLPPVKGRMEKI-DSDLPIQIFIDYAHTPDAIEKAINAAMPYKKPE 372 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439 ++I + G GG RD+ KRP M + A +AD I+T D+PR E+ + I ++ G+ + Sbjct: 373 NKLIFLVGTGGGRDKTKRPTMAEKAS-VADYVILTTDDPRYEEFDSITGDLAKGMKHKNY 431 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 G+R EA+R A+ + N D+++ AGKGHE I+ N K D I E Sbjct: 432 ACIGDRAEAVRHAVSVANPGDIIIFAGKGHEDYQIIEN-TKYPHSDAKIAIEA 483 >gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 85-1] Length = 471 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 16-3] gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli RN587/1] gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 60-1] Length = 471 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] Length = 492 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 150/492 (30%), Positives = 236/492 (47%), Gaps = 20/492 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L L + +NE+ DSR ++ G +FVAI G++ DG FI +AI GA AI Sbjct: 2 RDLHTILKHLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAI 61 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + + P+ +V K L + AS+ Y + +++ + VTGT+GKS+ Sbjct: 62 IADRLCEFESDFE------PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTT 115 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + Q + IG + TTPS + L + LS L ++ V++E Sbjct: 116 TAMIAHLAQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL QHR+D A FTNL RDH+DYH Q+Y +AK+ LF + I+ Sbjct: 176 VSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRD--FDADHVILNQ 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD +++ +++ +F++ V ++ D Sbjct: 234 DDGQAEQWIEKYSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVAIKS 293 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GEF +YN A +A+G ++ E L V GR + S VDYAH Sbjct: 294 PLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTC-VVDYAH 352 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L + L+ ++ G + VFGCGGDRD+GKR +M + A AD I+T DNPRSED Sbjct: 353 TPDALALALQALQQHVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFADKVIITSDNPRSED 412 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I ++ G+ + +R AI+ AI+ +V+++AGKGHE I+ + + Sbjct: 413 PNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKGHEDYQIIGD-TRI 471 Query: 482 MSVDCDIIREIL 493 D +++ L Sbjct: 472 DFCDRQFVQQQL 483 >gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] Length = 471 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella halifaxensis HAW-EB4] gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis HAW-EB4] Length = 488 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 232/499 (46%), Gaps = 23/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++DL+ F + + +E++ DSR +Q+G +FVAI G + DG FI Sbjct: 1 MLIRDLLAPWFHYSGAE-----------EFSELTLDSRAVQSGSLFVAIPGYQVDGRKFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119 A +GA A++V + + + IL R+ +L A + I+ Sbjct: 50 TAAFERGASAVLVHTDSPEEHGKLVHEAGLQILFFQLNRQISALAAQAYPLSQVRPQIIG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+SV + Q+ G + +G D+ TT PI L K L Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFE 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G ++E SSHGL Q R++ + FTNL RDH+DYH T AY AK RLF+ Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFAT 229 Query: 239 PKESPAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 A + D + + A + G I+ K T+ Sbjct: 230 L---RAGLINCDDALGREWLTDLASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWP 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G+F + N L A G +G D ++ EKL V GR E T Sbjct: 287 TGEAKLNSPLLGDFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTTKDE-V 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +++E LK +R G++ VFGCGGDRD+GKRP+M A AD +VT Sbjct: 346 TLVVDYAHTPDAIEQALKALRVHCKGKLWCVFGCGGDRDRGKRPMMAASAEQFADRVMVT 405 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DN RSEDP I A+I+ G+ + + +R AI+ + D++++AGKGHET Sbjct: 406 SDNSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKGHETYQ 465 Query: 474 IVTNGEKKMSVDCDIIREI 492 + NGE+ + + I Sbjct: 466 EI-NGERLNYDERAFAKAI 483 >gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] Length = 499 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 155/506 (30%), Positives = 243/506 (48%), Gaps = 26/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DLI L++ L + ++++ +++DSR G + A+ G DGH FI Sbjct: 2 MTLEDLIG-----LLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 A+++G +V + ++ + V + R L+ A+ +G ++ Sbjct: 57 SDALSKGVGVVVCE------EIPVSVDERCCYIRVADCRTALAAAAAEWFGHPASSLRVI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A ++ + RSG+ + IG + I + TTP + L + Sbjct: 111 GVTGTNGKTTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SSH L HR +GI FTNL +H+D+H T Y +AK LF + Sbjct: 171 VNCGCEAVVMEVSSHALVLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQ- 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQV 291 + + I+ ADDA+ + + +VG Q + + A + V Sbjct: 230 VAPDGFGIVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSV 289 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T+ + G+ F LPG F V N L +A+G+ + + V GR E V Sbjct: 290 TVQMNGRACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSD 349 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDL 409 + VDYAHT ++LE ++ + + IVVFGCGGDRD+ KRP+MG IA Sbjct: 350 DGGLFSAIVDYAHTPDALEKVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMGGIAAAG 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD I+T DNPRSEDPE+I I GI F+ +R +AI ++ML D+L++AGK Sbjct: 410 ADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDLLLIAGK 469 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHE + G K D +++ L Sbjct: 470 GHECYQE-SGGRKSYFSDREVVARAL 494 >gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli STEC_7v] Length = 471 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV+++AGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] Length = 471 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLSDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G + +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLSDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 117-3] Length = 471 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 550 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ LI + + P + + ++ D+R +Q G +F+A+VG DGH + Sbjct: 58 MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAI +GA+ IV S + N P++ V+NT + +++ A YG + + + Sbjct: 113 DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++QI + ++ IG I TTP I + L+ + Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283 Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A++ DD +E + A + I+ + V + + Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +SV G L G+F VYN L A A GI +++ LEK+ V GRF+ V Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ + Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR+EDP I +++ G+P +R AI AIE DV+++AGKGH Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 E I+ K D + + L L Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545 >gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea] gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] Length = 492 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 238/504 (47%), Gaps = 25/504 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ ++ N +S DSR I G +F+A+ G+ DG FI Sbjct: 1 MQLNDLLAPWLHYSGSES-----------FNGMSLDSRAITVGDLFIAVPGHLVDGRKFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPE--NI 117 A QGA A +V + + ++ ++ + LS ++ Y P+ + Sbjct: 50 QAAFEQGAVAALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGAQAYPLAPQRLKL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S+ + Q+ G + +G ++ TT PI +A L Sbjct: 110 IGVTGTNGKTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQD 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G ++E SSHGL Q+R+ + FTNL RDH+DYH T QAY +AK RLF+ Sbjct: 170 FDLAGADLCAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKF 229 Query: 237 LLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + S + DD ++ + + A + G + S I+ + H + Sbjct: 230 SSLQSSLINL--DDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAML 287 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 PL G F + N + A G IG D ++ + L V GR E T + Sbjct: 288 VWPEGRAKLASPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTAN 347 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G I VDYAH+ +++E LK +R G++ +FGCGGDRD+GKRP+M + A AD Sbjct: 348 -GVTIVVDYAHSPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKV 406 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++T DN RSE PE I +I+ G+ + + NR +AIR + + D++++AGKGHE Sbjct: 407 MITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T V G + + + + + G Sbjct: 467 TYQEVA-GVRFEYDERALAKSLAG 489 >gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] Length = 471 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 164/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 3431] gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli LT-68] gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia fergusonii ECD227] Length = 471 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 243/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] Length = 471 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLAELLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] Length = 508 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 247/501 (49%), Gaps = 18/501 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + EL+ ++ P + ++++ DSR + +G +FVA G +G ++ A+A Sbjct: 4 IAQQRLAELLKGIAEVPAAL-DCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALA 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 +GA A++ + + + + N R + + A R +G+ H ++ VTGT Sbjct: 63 RGARAVL----LPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGT 118 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGV 182 +GKSSV +V Q+ + G+S+ +G + TTP + L + L+ L +G+ Sbjct: 119 NGKSSVTHYVAQMAEGLGMSAAVVGTLGYGRPDSLKATTHTTPDAVSLHRVLAELRDEGI 178 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V++E SSH LDQ R G+ TN+ RDH+DYH T +AY AK RLF + Sbjct: 179 ELVAMEVSSHALDQDRAAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLFLSDSVRWK 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKD 299 DD Y + S+G Q + + + + + + + Sbjct: 239 V--FNQDDPYGARWAQELQGPKTLTFSIGKQDQTAADVCAEDIHFDADGMSFALDLGATR 296 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L GEF + NAL A A+ ++ V + L +L V GR + + + + Sbjct: 297 EPARLALVGEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRLHEDKAPT-VL 355 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE+ LK R GR+ VFGCGGDRD GKRP+MG +A AD ++TDDN Sbjct: 356 VDYAHTPDALEVALKAARRHCPGRLWCVFGCGGDRDPGKRPLMGAVAAQYADEVVLTDDN 415 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR EDPE I A+I+ G F R +AIR A+E ++DV+++AGKGHE + Sbjct: 416 PRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKGHEDYQEIQ 475 Query: 477 NGEKKMSVDCDIIREILGLIL 497 G + D I R+ L ++ Sbjct: 476 -GRRLPFSDIAIARDCLASVV 495 >gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 495 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 154/481 (32%), Positives = 229/481 (47%), Gaps = 21/481 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I V DSR I+ G +FV I G D H FIP GA A++ + + Sbjct: 23 VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +L V + L + Y ++ +TGT+GK++ + V+ I + +G Sbjct: 77 AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TTP + + + L+ + ++G+ V +E SSH LDQ R+ GI+ Sbjct: 137 LVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAH 261 FTNL +DH+DYH+T + Y AK RLFE + A A D + VM+ Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGPVMRAHT 256 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V Q + + + + + ++ + GEF VYN L AAG Sbjct: 257 TCPVLSYGVTQQAALT-ARDIRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAAGA 315 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A GI ++ LE VPGRFE V + VDYAHT + +E +L+ R +T Sbjct: 316 ARAEGIGYDVIRAALEGFTGVPGRFELVRAGQ-DFSVIVDYAHTPDGMENVLRTARAVTR 374 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GRIIVVFGCGGDRD+ KRPIMG+I ++AD+ +T DNPR+EDP I E+ G Sbjct: 375 GRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEVESGALPVLG 434 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + + +R AI A+ D +V+ GKGHET I+ G D + E + Sbjct: 435 GKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTI-HFDDRETAAEAIRS 493 Query: 496 I 496 + Sbjct: 494 V 494 >gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] Length = 469 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 229/472 (48%), Gaps = 14/472 (2%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR AG +FVA+VG+ DG FIPQAIAQG A++ + +D S P++ Sbjct: 1 MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ + LS A R YG+ ++ VTGT+GK++ + Q Q G + +G Sbjct: 61 LNRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120 Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TT S + + L L+ G T V++E SSHGL Q+R+ + A +FTN Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268 L RDH+DYH + Y AK RLF E ADD + + +A + Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIVN--ADDEMGLLWLDKLPDAVAVTVTGV 238 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ G+++ V + + L GEF V N LVA +A+G Sbjct: 239 LPEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGY 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + +L V GR E + VDYAHT ++LE L R G++ + Sbjct: 299 PLAALCAASVQLQPVCGRMEVF-QAPAKPTVVVDYAHTPDALEKALLAARLHCQGQLWCL 357 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+P I EI+ G+ + Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ QDV++VAGKGHE +V N D + +LG++ Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 468 >gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 471 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 236/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D P+ Sbjct: 1 MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + + ++ VTGT+GK++ + Q + G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + LS L QG T ++E SSHGL QHR+ ++ A F Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AI+ ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E + + VDYAHT ++LE L+ R SG++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKPAVVVDYAHTPDALEKALQAARLHCSGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R +A+ A+ + DV++VAGKGHE IV N D + +LG + Sbjct: 418 EGRAKAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDY-SDRVTVARLLGAV 470 >gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS195] gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS195] gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS678] Length = 499 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 149/506 (29%), Positives = 228/506 (45%), Gaps = 27/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ Q ++++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWLHYAGAQS-----------FSDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +A+ A A++V + + Q I V +R+ ++ A R H Sbjct: 51 EKALDLSAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110 Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170 + +TGT+GK+S + + Q+ G + +G D+ TT I L Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y AK Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230 Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LF + A A +K G+Q + K Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 T+ + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 SATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + + VDYAHT +++E L +R G + VFGCGGDRD+GKRP+MG+ A Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQY 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DN RSEDP +I +II G+ + + +RI AI+ + + DV+++AG Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHET G + + + R++ Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494 >gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum reducens MI-1] gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfotomaculum reducens MI-1] Length = 486 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 168/502 (33%), Positives = 247/502 (49%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ I + E I + DSR G IFVA+ G + DGH +I Sbjct: 1 MLLKELLQAIPV-------ITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+A + + + + + V ++RK L+L A + YG + ++ Sbjct: 54 ENAVA-------AGVTAVVYETEIVLPTGVTGVQVSDSRKALALMADQFYGHPSKKLSMV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + I +++ + IG I A TTP + L K L+ + Sbjct: 107 GVTGTNGKTTTTHLIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV V++E SSH L +R+ G+ FTN+ +DH+D+H T + Y AK +LF Sbjct: 167 LDEGVKGVAMEVSSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFTTD 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD ++E+ K + G Q I K + S Sbjct: 227 IQ---YAIINADDPAAEELKKISR--GKVYTYGIDQAADIRAKDIQVTARGVSFMASGPW 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F VYNAL A +A+G S V+ LE + V GRFE + + Sbjct: 282 GNHQLNLKLTGRFNVYNALAAYTTGMALGFGSDTVVSALEDVPGVAGRFELL-DKGQNFA 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL R IT GR+I VFGCGGDRD+ KRPIMG+IA +D+ +VT Sbjct: 341 VVVDYAHTPDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTS 400 Query: 418 DNPRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+E+P+KI +++ G+ I +R EAI AIE+ + DV+V+AGKGHE Sbjct: 401 DNPRTEEPQKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAIELAQEGDVVVIAGKGHED 460 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ K D + L Sbjct: 461 YQIIGT-TKYSFDDRKEAAKAL 481 >gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] Length = 471 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E + + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFTALGKPT-VVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] Length = 499 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 150/506 (29%), Positives = 229/506 (45%), Gaps = 27/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ Q N+++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 + + GA A++V + + Q I +R+ ++ A R H Sbjct: 51 EKVLDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110 Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170 + +TGT+GK+S + + Q+ G + +G D+ TT I L Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L +QG + ++E SSHGL Q R+D + FTNL RDH+DYH ++Y AK Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAK 230 Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LF + A A +K G+Q + K Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 T+ + + PL G F + N L A G D + E ++ L V GR E Sbjct: 291 SATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MGK A Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DN RSEDP +I +II G+ + + +RI AI+ + + DV+++AG Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHET G + + + R++ Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494 >gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] Length = 488 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 151/505 (29%), Positives = 231/505 (45%), Gaps = 33/505 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+D++YK I + + DSR F+A+ G DGHLF Sbjct: 1 MKNLKDILYKVSANKI-------FGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I +AI GA +V DF + + V +T+ L++ AS Y I Sbjct: 54 IDKAINLGAIVVVCE------DFPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++VAS + Q+ +++G + + TTP + + L Sbjct: 108 IGVTGTNGKTTVASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDK 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + GV +E SSHG+ Q R +G+ G FTNL DH+DYH T AY N K F+ Sbjct: 168 MIDAGVDFCFMEVSSHGIHQKRTEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDT 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + + DD + +++ + + + + + + Sbjct: 228 -LPKSAFVLANIDDKNGRFMLQNSKAIKKTYALKTAADYKVKILEKQLSGTLIALDGTE- 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 L G F +YN +G++ +L L L V GRFE+V + G Sbjct: 286 -----VWIKLIGVFNIYNVTAVIATAELLGLEKLEILTILSALESVSGRFEYV-ISQDGV 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L+ I I G ++I V GCGGDRD+ KRP M IA L++ I Sbjct: 340 TAIVDYAHTPDALKNVLETINDIKIGAEKVITVLGCGGDRDKTKRPKMAHIASQLSNQVI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E+P+ I ++ GI + +R +AIRTA + D+L++AGKGH Sbjct: 400 FTSDNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E TNG + D + ++ Sbjct: 460 ENYQE-TNGVRIHFDDLEEVKNCFN 483 >gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 155-74] Length = 471 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] Length = 492 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 136/497 (27%), Positives = 239/497 (48%), Gaps = 25/497 (5%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ ++ E I++++ + I +++ S ++ G++F+ G++ D H + I Sbjct: 1 MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 +GA +VV S+ + P +VV ++R S+ ++ Y + +TG Sbjct: 61 KKGASFLVVEHPISV---------DFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQ 180 T+GK++ A + + G + +G + TTP I + KA+ + Sbjct: 112 TNGKTTAAHLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDR 171 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 H +E SSH L R++ +K + TN+ RDH+D+HQT Y K+ +F+ L Sbjct: 172 SGKHFVMEVSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEF 231 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + V KR +V+ + + + + Sbjct: 232 GIAVV---SDEFEHIVNKRV----KKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFGEH 284 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIY 359 +PG YNA + +G D ++E ++ V GRF+F+ + G I Sbjct: 285 KCSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIV 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VD+AH+ ++LE L R I SGRII VFG GG D+GKRP+M ++ +D++I+T D+ Sbjct: 345 VDFAHSPDALEKTLITARKIASGRIITVFGAGGQADKGKRPMMAEVVCRYSDVSIITTDD 404 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR EDPE+I E+ G+P ++ +R EAI TA+ + N+ D+++VAG+GHE I + Sbjct: 405 PRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIVAGRGHEEYQIFS 464 Query: 477 NGEKKMSVDCDIIREIL 493 + K D ++IR+IL Sbjct: 465 DERKIPFKDAEVIRKIL 481 >gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 496 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 226/484 (46%), Gaps = 22/484 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ + + +++DSR ++ G +FV I G D H FIP A+ +GA A+V Sbjct: 11 LEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQR------- 63 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 + + VV + R LS A R YG ++ VTGT+GK++ A V+ I + + Sbjct: 64 PWAVPTGIGAAVVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVEAIARTA 123 Query: 141 GLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG + + TTP P + + L+ + +G +E SSH L+Q Sbjct: 124 GKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVSSHALEQR 183 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R D + FTNL +H+DYH + Y+ AK RLF L + A++ DD Y + + Sbjct: 184 RTDHCRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRG-LQPGAAAVVNIDDPYGRRLA 242 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-PGEFQVYNAL 316 + + +G I + V + + + D P G + V NA+ Sbjct: 243 EEIPAGVRTLTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLFGTYNVSNAM 302 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G +A+G + L PGRFE + + + VDYAHT + E +L ++ Sbjct: 303 AAVGAGLALGFSLQDAVAALGTAKGAPGRFERI-DEGQDFTVVVDYAHTPDGFEKLLSDV 361 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R+I+VFG G RD KRP MG+IA + D+ ++T+++PR+ED +I +I Sbjct: 362 ARIKEPGSRVIMVFGSAGQRDPSKRPDMGRIAGEYCDVLVLTEEDPRTEDAMEIARQIAS 421 Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ +R+EAIR AI M D++++ GKG ET V + D Sbjct: 422 GVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITGKGQETELEVQHPTT-WRGDVVEAV 480 Query: 491 EILG 494 + L Sbjct: 481 DALR 484 >gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 485 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 139/496 (28%), Positives = 241/496 (48%), Gaps = 26/496 (5%) Query: 9 KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L + I + E I ++ +S+ I G +F AI G DGH FI +AI + Sbjct: 2 KTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKK 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A IV + L V ++ ++ A+ + + ++ VTGT+G Sbjct: 62 ARVIVCQQ------LPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++A+ + + + + I + + D + TTP I L + + + +GVTH Sbjct: 116 KTTIATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTH 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSHG+ HR++G+ G FTNL +DH+D+H+T Y N K + F+ L K++ A Sbjct: 176 CFMEVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDT-LKKDAFA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD +++ Y ++ + + + + Sbjct: 235 LTNIDDKNGNFMLQNTQAHKYNYALRTYADFKANILENAFSG------LVLRIGQQEIWT 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G+F YN L + +G+D V + + +L V GRF+ ++ + VDYAH Sbjct: 289 HLIGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQ-YFISAGNITVIVDYAH 347 Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++L+ +L+ I++I S ++ + GCGG+RD+GKRPIM IA ++D I T DNPR Sbjct: 348 TPDALQNVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNPRE 407 Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EDP+ I E+ G+ ++ +R +AI+ A + + D++++AGKGHET V Sbjct: 408 EDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHETYQEVK- 466 Query: 478 GEKKMSVDCDIIREIL 493 G + D + + I+ Sbjct: 467 GHRSHFDDLEEAKLIM 482 >gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale M104/1] Length = 490 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 136/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + +++ + +I+ + DSR ++ +FV I G D H FI Sbjct: 1 MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + +GA A+VV T + VD+TR L+ ++ + E I + Sbjct: 54 PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G+ + IG S + TTP + + + Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G+ V +E SS L HR+ G G FTNL DHI H + A + L Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ I+ D E + + H + + V + + Sbjct: 224 LFRQCRLGIFNGDDEHLEGIMKGHTCQVETYGYKSTNNLV-AENVELKKEHGALGVKYHV 282 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 DFD +PG+F VYN+L A +C +D + E L + V GR E V R Sbjct: 283 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 341 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH + +LE +L ++ GR++ +FGCGG+R + +R MG+++ LAD+ + Sbjct: 342 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPR E+P I +I+ G+ ++ +R EAIR +E D++V+AGKGHE Sbjct: 401 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K + ++I +I+ Sbjct: 461 DYQEIK-GVKHHMDERELIADII 482 >gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9211] gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9211] Length = 505 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 249/503 (49%), Gaps = 23/503 (4%) Query: 11 FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L+ + + P+ ++ +I +SSDSR ++ G +F + G K++G F +A GA Sbjct: 5 LHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENI--LAVTGTSGK 126 A VV ++VV + +++ AS +GK + + VTGT+GK Sbjct: 65 AAVV---GDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ + + SG ++ +G + +++ + TT L LS + + G + Sbjct: 122 TTTTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLC 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP 243 ++E SSH L Q R+ G+ FTNL +DH+DYH++ +AYF AK LF+ L K ++ Sbjct: 182 AMEVSSHALSQRRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQAR 241 Query: 244 AIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A++ DD + + KR + ++ + + + + I + Sbjct: 242 AVVNIDDQWGFRLAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEGFIHTPFGE 301 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----R 354 F+ PL G F + N L + G+ + G +L VPGR E V Sbjct: 302 GPFMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKSDSLP 361 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT + L+ LK +R SG++I VFGCGGDRD+ KR MG+IA +++DI I Sbjct: 362 MPIVLVDYAHTPDGLKNALKAVRPFVSGKLICVFGCGGDRDKSKRSYMGEIAAEISDIVI 421 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+EDP I +I+ GIP I + +R +AI +I D++++AGKGHE Sbjct: 422 VTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAGKGHED 481 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + +K D + E L Sbjct: 482 YQILGD-KKIYFNDKEAAIEALE 503 >gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] Length = 476 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 235/469 (50%), Gaps = 16/469 (3%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + S + G +FVA+ G + DG FI A+A+GA +V + + + Sbjct: 17 TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVH-----KEGVAVAPAAGV 71 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L V N + L + A G I+ VTGT+GK++ A + + +GL + IG Sbjct: 72 STLAVPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIG 131 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +TTP + L + + GV + +E SSH LDQ R G+ + G Sbjct: 132 TVHCSWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQERTAGLPMAVG 191 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 F+NL +DH+DYH + YF AK RLF + + + ++ DD Y + + + Sbjct: 192 VFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRL--KMMRPDLLG 249 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + + + A + IS +G ++ L G YN L A G + +G+ Sbjct: 250 FGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGL 309 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +A + L PGR E V N+R I++DYAHT ++LE + ++++ R+I V Sbjct: 310 TAAQCACLSQALGA-PGRLERVP-NTRELNIFIDYAHTPDALEKVSVALKSMGFKRLITV 367 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 FGCGGDRD KRP+MG AD+A+VT DNPR+EDPE I +I G+ G + + + Sbjct: 368 FGCGGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLAGARLVLREVD 427 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +AI A++ + D L++AGKGHE ++ EK+ D +++RE L Sbjct: 428 RRKAIALAVQSMQPGDALLIAGKGHEDYQVIGT-EKRHFSDFEVVRECL 475 >gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] Length = 495 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 162/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P ER + E++ DSR + +F+A+ G++ DG +IP Sbjct: 5 NLRDLLAPWVP-----------NAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + +D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q + G +S +G TT S + + LS L Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ ++ A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + + +A ++ G+++ V + + Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G A +L+ +L V GR E + Sbjct: 292 SSWGNGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG + Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494 >gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM 17629] Length = 490 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 137/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + +++ + +I+ + DSR ++ +FV I G D H FI Sbjct: 1 MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + +GA A+VV T + VD+TR L+ ++ + E I + Sbjct: 54 PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G+ + IG S + TTP + + + Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G+ V +E SS L HR+ G G FTNL DHI H + A + L Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ I+ D E + + H + + V + I Sbjct: 224 LFRQCRLGIFNGDDEHLEGVMKGHTCQVETYGYKSTNNLV-AENVELKKEHGALGIKYHV 282 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 DFD +PG+F VYN+L A +C +D + E L + V GR E V R Sbjct: 283 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 341 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH + +LE +L ++ GR++ +FGCGG+R + +R MG+++ LAD+ + Sbjct: 342 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPR E+P I +I+ G+ ++ +R EAIR +E D++V+AGKGHE Sbjct: 401 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K + ++I +I+ Sbjct: 461 DYQEIK-GVKHHMDERELIADII 482 >gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 471 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 241/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + + ++ VTGT+GK++ + Q Q G + +G Sbjct: 61 IYLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + + L+ L+ QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TNL RDH+DYH + Y AK L+ AII ADD + +++ +A + Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHHGQAIINADDEVGRRWLEKLPDAVAVSME 238 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +G+++ +V + + + + + L G F V N L+A +A+ Sbjct: 239 DRINPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ E+L V GR E + + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPMADLLKTSERLQPVCGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGMLDAGRARVV 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI + DV+++AGKGHE IV N D +LG++ Sbjct: 418 EGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDY-SDRVTAARLLGVV 470 >gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 57-2] Length = 471 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG+I Sbjct: 418 EGRAEAVTCAVIQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470 >gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] Length = 533 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 145/527 (27%), Positives = 230/527 (43%), Gaps = 42/527 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ +I E Q Q +++ + DSR I+ G +FVA G+ DG +I Q Sbjct: 11 LKKIIKPLVNE---QFWKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQ 67 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----------------------LVVDNTR 99 A+ GA ++ S + N + + V N Sbjct: 68 AVDGGATVVLFEQNDSETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLS 127 Query: 100 KFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-F 156 +S A+R YG + + VTGT+GK+S A + Q + + + + Sbjct: 128 SQVSHIAARFYGNPTNKMSVVGVTGTNGKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSK 187 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 Q TTP I + + + ++ H+++E SSHGL Q R+ ++ FTNL +DH Sbjct: 188 LQATENTTPDAIAIQRLAAEYLARKNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDH 247 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275 +DYH ++YF AK +LF + A+I ADD Y + ++ A ++ Q Sbjct: 248 LDYHSDMESYFQAKRQLFIR--EELEAAVINADDEYGRRLLTDDAVACRKIAFSCEQKNE 305 Query: 276 ------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 +I K + Q + L G F + N L A + D Sbjct: 306 DLNIENWIVAKNLTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDI 365 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L VPGR + T S + VDYAHT ++L+ L ++R +G + +FG Sbjct: 366 DKWIVALNAAKAVPGRMQ-NFTASSKATVVVDYAHTPDALDKTLTSLREHCAGELWCIFG 424 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIE 447 CGGDRD KRP+MG +A A+ I+TDDNPR+E E+I + I G+ R E Sbjct: 425 CGGDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYIQKRKE 484 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AI A++ D+++VAGKGHE + N + D + + ++ Sbjct: 485 AIEFALKHSTPNDIILVAGKGHEDYQQIGNKKVHY-SDLETVASLME 530 >gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] Length = 500 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 186/510 (36%), Positives = 271/510 (53%), Gaps = 30/510 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI + + + + + D R + G +F A G + FI Sbjct: 1 MKLAALIERA--------GLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P AI GA AIV S ++ + + R+ + A+ + PE I+AV Sbjct: 53 PAAIEAGAVAIVARSEAKVE--------GALHIASEEPRRDFAQLAAGFFTPAPETIVAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S A +QI + G + IG + LTTP + +S L+ Sbjct: 105 TGTNGKTSTAEMTRQIWRMCGERAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTHV+ EASSHGL Q+R +G+++ AG+FTN RDH+DYH+T AYF AKMRLF+E++ Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVE 224 Query: 240 KESPAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 ++ AII+ + +++ ++ A + VL+VG +G F+ L A Q + + + Sbjct: 225 EDGKAIIWDGGEECEWTRRAIEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYD 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ PL G +Q NALV+AGL IA G A V + + +L V GR E + G Sbjct: 285 GESRKVKLPLIGAYQAANALVSAGLAIATGAAPAQVFDAIGRLQPVRGRLERACLTASGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 +Y+DYAHT ++LE + +R G ++IVVFG GGDRD GKR MGK+A D AD+ Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVDGEKGGKLIVVFGAGGDRDTGKRAPMGKVAADSADL 404 Query: 413 AIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+TDDNPR EDP +IRA ++ G G R EAI AI + D+++VAGKGH Sbjct: 405 VIITDDNPRGEDPGEIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKGH 464 Query: 470 ETVHIVTNGE---KKMSVDCDIIREILGLI 496 E I+ +GE D ++ RE L+ Sbjct: 465 EQGQIIGSGETMRVMPFDDVEVARECAALV 494 >gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 471 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 236/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + EN+ +AVTGT+GK++ + Q Q G +S +G Sbjct: 61 VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266 TNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ + V + + D + L G F V N L+A +A+ Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI DV+++AGKGHE IV D +LG+I Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470 >gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] Length = 502 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 149/519 (28%), Positives = 232/519 (44%), Gaps = 44/519 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L +LI L +L + + I +++ DSR + G +FVA+ G + DGH F Sbjct: 1 MTLDELIGP----LHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF 56 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSN-----TPILVVDNTRKFLSLFASRLYGKHP 114 + + + ++ + P + V ++R L + SR YG Sbjct: 57 L-------------DRVVAAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPS 103 Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171 ++ VTGT+GK++ V+ + + + IG + + + TTP + L Sbjct: 104 SSLRMVGVTGTNGKTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQ 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 K + + + V +E SSH L R G + FTNL +DH+D+H + YF AK+ Sbjct: 164 KLFARMREARLDTVVMEVSSHALALDRTAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKL 223 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 +LF E + AII ADD + + + V Sbjct: 224 KLFAELGRAGAVKPRKRAIINADDPWGARIRSACTVPVWTYGLHQQADI--YADGVRLSP 281 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ L GE V N L A G+ + G+ V +E + VPGRF Sbjct: 282 AGTSFTLRSPAGTCPIKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRF 341 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V + + VDYAHT ++L +L + + +GRII VFGCGGDRD+ KRP MG+ A Sbjct: 342 ELV-EAGQDFSVVVDYAHTEDALVRLLTAAQALRTGRIITVFGCGGDRDRTKRPKMGRAA 400 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---------GFIEKGNRIEAIRTAIEMLN 457 + +D+ I+T DNPR+EDP I E+ G+ + +R EAI AI Sbjct: 401 VKYSDVVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREAK 460 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 D++++AGKGHE IV K D ++ R+ +G + Sbjct: 461 PGDMVLIAGKGHEDYQIVGT-TKHHFDDREVARDTIGAL 498 >gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] Length = 523 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 143/493 (29%), Positives = 237/493 (48%), Gaps = 21/493 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ + ++R+IN +S DSR + G +F A G ++ GH +I Sbjct: 26 LSDLLAGL---------VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGA 76 Query: 63 AIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA A+ L + + P++ + + L + A R Y + + ++ Sbjct: 77 AVGKGAVAVAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVM 136 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV+ F+ Q + IG + ++LTTP + + + L+ Sbjct: 137 GVTGTNGKTSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVT 196 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E +SH L+Q R++G+ FTNL R+H+DYH Y AK RLF + Sbjct: 197 RAAGGRYAVMEVTSHALEQGRVNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQP 256 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + A + + + + ++ + I Sbjct: 257 GLRHAVINVDDT-AGEAFLAHLPAEVTVISYGLTNPQASLRVNELHCDRRGIVMNIQGPW 315 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + + PL G F YN L A G + G+ L+ L ++ V GR E +G + Sbjct: 316 GEGELICPLLGRFNAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPL 375 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L ++R R+ VFGCGG+RD+GKRP+MG +A AD ++ Sbjct: 376 LVVDYAHTPDALEQALCSLRAHLEPGARLWCVFGCGGNRDRGKRPLMGAVAERWADFVML 435 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPR EDP +I EI+ G+ + +R EAI A+E+ +D++++AGKGHE Sbjct: 436 TDDNPRDEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKGHEEY 495 Query: 473 HIVTNGEKKMSVD 485 V E++ D Sbjct: 496 QQVGT-EQRPFSD 507 >gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] Length = 501 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 169/510 (33%), Positives = 254/510 (49%), Gaps = 31/510 (6%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + E+ +L + + + DSR + +FVAI G DGH + Sbjct: 1 MRLKDLINSIELVEIAGELH------EDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQY 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I QA+ A AIV + + S+ L V ++R+ L+ A R Y + + Sbjct: 55 INQAVEADAMAIVCE------EIPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKV 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ I + + + IG T I + + TTP + L + Sbjct: 109 IGVTGTNGKTTTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHK 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G V +E SSH L R GI+ FTNL DH+D+H + AY +AK LF+ Sbjct: 169 MLEAGCRAVVMEVSSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDN 228 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-- 294 L + + A+I ADD Y+++++K R + + K + + + TI+ Sbjct: 229 -LSESAFAVINADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGT 287 Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + F G+F +YN + A +A G D ++ L K V GR + V Sbjct: 288 SAIIADDKNSMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQV 347 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + VDY+HT ++LE L+ I +GRII +FGCGGDRD+ KRP+MGKIA Sbjct: 348 -WSKDHRCAIVDYSHTPDALENALQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIAE 406 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D +DI I+T DNPRSEDPEKI +I GI F +R AIR AI +L + DV ++ Sbjct: 407 DNSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALI 466 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AGKGHET + G+K D +II + Sbjct: 467 AGKGHETYQEIA-GKKFHFDDKEIIESVFR 495 >gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anabaena variabilis ATCC 29413] gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anabaena variabilis ATCC 29413] Length = 496 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 171/500 (34%), Positives = 253/500 (50%), Gaps = 17/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++ + P + ++ + ++S AG +F+ + G + DG F Sbjct: 1 MKLRELLA-----TVDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA GA A +VS ++ + ++ +N K + A+ YG + + + Sbjct: 56 PSAIASGAIAAIVSPQAVEKNPPS---DEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++ LS+ +G F Q TTP + L + L+ Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +E SSH L Q R+ G G F+NL +DH+DYH + YF AK LF Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPD 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD Y + ++K SV + + + N TI Sbjct: 233 -YLKGRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 D F PL G++ + N L + G + +G+D L+ + + VPGR E V N + Sbjct: 292 GDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQINPDQDI 351 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +LAD+A VT Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELADLAFVT 411 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPEKI +I+ GIP + G+R AIRTAI D +++AGKGHE Sbjct: 412 SDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R L Sbjct: 472 ILGT-EKIHFDDREHARAAL 490 >gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 512 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 147/509 (28%), Positives = 227/509 (44%), Gaps = 28/509 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ + E + I Q + ++N V DSR + G IF + G + DGH F Sbjct: 1 MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA A+ V+ + P LV + R F+ A+ LYG ++ Sbjct: 61 RDAVDRGAVALCVARPLA--------EVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMI 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 +TGT+GK++ + I + G + +G ++ TTP + L + Sbjct: 113 GITGTNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRM 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +EASSHGL Q R++G + G FTNL +H+D+H T+ AYF+AK LF Sbjct: 173 RDNSCQACVMEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRY 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTI 293 + + A D ++ + +G + + + Sbjct: 233 MKEGWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEV 292 Query: 294 SVEGKDFDFLF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 F PL G + NA+ L + +GI V+ L + VPGR E Sbjct: 293 YDPRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYR 352 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 +R +DYAHT + LE +L +R +T G++ VVFG GG+R RP +G +A LA Sbjct: 353 FPNR-VVGVIDYAHTPDGLEKVLGALRGVTVGKLWVVFGHGGERTGSHRPKLGAVAASLA 411 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--------EKGNRIEAIRTAIEMLNKQDVL 462 D A+VT DNPRSEDP I A+I+ GI +R EAIR A++ DV+ Sbjct: 412 DRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDNAEIGDVV 471 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + GKG E + ++ + D +R Sbjct: 472 AITGKGPERFILFSD-RRVPFEDSAELRR 499 >gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] Length = 489 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 149/506 (29%), Positives = 245/506 (48%), Gaps = 32/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ LI I +E +I + + S+ + G +F+A G DG +I Sbjct: 1 MKLKRLIKDLPNAEIKGS-------KEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A+ GA A++ + ++ N S Y + E ++ Sbjct: 54 AEAVETGAAAVL--------NDIFDPSLKVSQIIHPNVAVVEGKLVSAFYHRPGEELLMV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V+ ++ + + IG I A TTP K L + Sbjct: 106 GVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--- 234 +Q +E +SH L Q R+ I G FTNL +DH+DYH+T AY K +LF Sbjct: 166 VNQRSQAAVMEVTSHALHQGRVSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL 225 Query: 235 ----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 ++ A++ DD + ++++ + +++ Sbjct: 226 DPEAKKRKNYPKAAVVNIDDPWFEKIIDGCRVPIITYGIANHADL--RAEEIQLGAEGIV 283 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T+ +GK + PL G F V N+L G I++G+ VL+ ++ VPGR E+V Sbjct: 284 YTLVHQGKRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYVP 343 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 N RG +++VD+AHT ++L+ +L ++ +T G++IVVFGCGGDRD KR MG+IA + + Sbjct: 344 -NKRGLKLFVDFAHTPDALKNVLNCLKELTQGKLIVVFGCGGDRDPYKRSQMGRIAEEFS 402 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 D+AI+T DNPRSE+P I +I+ G FI+ +R +AI AI +DV+++AG+ Sbjct: 403 DLAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAGR 462 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHE I + + D +++ +IL Sbjct: 463 GHEPYQIFAHQTIE-FKDREVVEDIL 487 >gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] Length = 494 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 157/495 (31%), Positives = 237/495 (47%), Gaps = 10/495 (2%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++L L +I + + + DSR + G FVA+ G+ DG FI A Sbjct: 3 KELTLAAL--LSPWQNISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A++ S + P++ + LS ASRLY H I+ VTGT Sbjct: 61 IELGANAVIAESCEQHLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGT 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+++ + Q + G + +G T Q TT + I + + L L Q Sbjct: 121 NGKTTITQLIAQWLELIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSA 180 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++E SSHGL Q R+ + G F+NL RDH+DYH T + Y AK LF E Sbjct: 181 QFTALEVSSHGLVQGRVKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSE--HNCH 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I DD ++R NA L + + K V + ++I D Sbjct: 239 NAVINIDDQVGSRWVERLDNAIAVSLKPTAIERAVWAKSVAYSESGISLSIDGMFGAGDC 298 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + PL GEF N L+A +A+GID L+LE L V GR E ++ VDY Sbjct: 299 VVPLIGEFNASNVLLAMTTLLALGIDKQLLLETASSLKPVLGRMELFTAE-NKAKVVVDY 357 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L +R G++ +FGCGGDRD GKRP+M I LAD I+TDDNPRS Sbjct: 358 AHTPDALEKALNALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIGERLADRVILTDDNPRS 417 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E P +I +++ G+ + + +R +A++ A+ + D++++AGKGHE ++ + Sbjct: 418 ESPAEIVKDMLVGMNQPDTAVVEHSRFDALQFALANSHADDIILLAGKGHEDYQVMAHET 477 Query: 480 KKMSVDCDIIREILG 494 D + ++L Sbjct: 478 IHY-SDRESAIQLLE 491 >gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] Length = 495 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + +++ + +I+ + DSR ++ +FV I G D H FI Sbjct: 6 MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + +GA A+VV T + VDNTR L+ ++ + E I + Sbjct: 59 PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDNTRLALACMSAAYFDYPAEKIKTI 111 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G+ + IG S + TTP + + + Sbjct: 112 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G+ V +E SS L HR+ G G FTNL DHI H + A + L Sbjct: 172 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ I+ D E + + H I + V + + Sbjct: 229 LFRQCRLGIFNGDDEHLEGVMKGHTCQVETYGYKSTNNLI-AENVELKKEHGALGVKYHV 287 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 DFD +PG+F VYN+L A +C +D + E L + V GR E V R Sbjct: 288 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 346 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH + +LE +L ++ GR++ +FGCGG+R + +R MG+++ LAD+ + Sbjct: 347 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 405 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPR E+P I +I+ G+ ++ +R EAIR +E D++V+AGKGHE Sbjct: 406 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 465 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K + ++I +I+ Sbjct: 466 DYQEIK-GVKHHMDERELIADII 487 >gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 487 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 146/502 (29%), Positives = 241/502 (48%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +LI E+I + E + +++DSR ++ G +FVAI G DGH + Sbjct: 1 MNLAELI-----EVIQTQKT--ERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA AQGA AIV + P+++V +T + ++ A + Y E ++ Sbjct: 54 KQAEAQGAVAIVSER---------LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + V+ + + G + IG I +R TTP L + Sbjct: 105 GITGTNGKTTTTTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 +GV V +E SSHGL+ R+ G FTNL DH+D+H+T + Y AK Sbjct: 165 HQEGVEDVIMEVSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQL 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L + A++ ADD S + Q + K + + T+ Sbjct: 225 GQRLSDKKVAVLNADDEISHLF--EMMTGARVLTYGIEQPADLQAKNITQTLQETTFTMV 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + + G F VYN L+A G+ ++IG + + ++ GR + + + Sbjct: 283 YQEQAVELTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPID-- 340 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G IYVDYAHT + +E LK + + II + G GG+RD KRP+MG++A A + Sbjct: 341 GYNIYVDYAHTPDGIEQCLKALVDVPKENIIFLIGTGGNRDVTKRPMMGQLASTYAGTVV 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +T D+PR E E I + I G+ F+E G+R EA+R A + +++++AGKGHE Sbjct: 401 ITTDDPRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKGHEKY 460 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ + EK + +++E++ Sbjct: 461 QIIGD-EKTPLDEEALVKEMIR 481 >gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] Length = 502 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 157/498 (31%), Positives = 235/498 (47%), Gaps = 13/498 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L L ++ ER I+ V+ DSR ++ G++F+A+ G G F +A++Q Sbjct: 5 LARAAHRLRGLLEPLGIEADERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQ 64 Query: 67 GAEAIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 GA AI+ D + + R P + V + + + A+R YG N+ + VT Sbjct: 65 GAAAILWQPTPGFDDQALSARCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVT 124 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSS 179 GT GK+SV+ F+ R +G + LTTP PI L L+ L + Sbjct: 125 GTDGKTSVSQFIAHALGRKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRA 184 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V +E SSH LDQ RL G+ TNL RDH+DYH +Q AY AK LF+ Sbjct: 185 RHAQAVVIEVSSHALDQQRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQRPEL 244 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + DD H G + + ++ A + ++ + G Sbjct: 245 HTVVVNVD-DDFGRSLRASVRHARVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCR 303 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F N L A G +A+ + L+ L L V GR E G+ R + Sbjct: 304 AAVRVGLLGRFNAANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRPT-VV 362 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAHT L+ L +R +GRI VFGCGGDRD+GKRP+MG +A AD I+T+DN Sbjct: 363 IDYAHTPAGLQAALAAMREHFAGRIWCVFGCGGDRDRGKRPLMGALARASADRIIITNDN 422 Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR+E+P +I AEI G +R EA+ +I +D ++VAGKGHE ++ Sbjct: 423 PRTENPRRIIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGKGHEEYQLIG 482 Query: 477 NGEKKMSVDCDIIREILG 494 + D + +++ LG Sbjct: 483 T-RQLPYSDRETVKQALG 499 >gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri 2930-71] Length = 471 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N D + +LG I Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGGI 470 >gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] Length = 507 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 158/509 (31%), Positives = 249/509 (48%), Gaps = 18/509 (3%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK ++LI + + + +I ++ +S+ ++ +IFVAI G K+DGH + Sbjct: 1 MKYFKNLIKGYDN---LNIKEITKESLKLEIKSIAYNSKLVKKNYIFVAIKGLKDDGHKY 57 Query: 60 IPQAIAQGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 I AI A I+ +S+ S + N + N R+ L+ +++LY + + + Sbjct: 58 IESAIKNKASIIIYDISADKSFINSLKEKYKNVCFVGSKNPRETLAYMSAKLYDEPTKKM 117 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 +A+TGT+GK++ + ++ + + IG + I LTTP + L Sbjct: 118 HSIAITGTNGKTTTSYLLKAALESAKNKIALIGTIKNMIGKSEIKTNLTTPESVDLENIF 177 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231 + V+H+ +EASS L R D I A FTNL DH+DYH + Y AK Sbjct: 178 DKAYKKNVSHIVMEASSQALAMDRCDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLF 237 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L ++ K+ AII Y KE+ ++++ G K + K+ +++K Sbjct: 238 SLLKQSSKKKKLAIINISTDYFKEIKNYIKKLDLKMVTYGLNEKADYYAKIITLNSKYSE 297 Query: 292 TISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F L GEF V N+L +D V++ + K+ V GRFE V Sbjct: 298 YEFYAKGKFISKVKLSLLGEFNVVNSLSVLAYAYEYKLDIEKVIKAIRKVQVS-GRFEIV 356 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VDY+HT +SLE IL R + R+IVVFGCGGDRD+ KRPIM IA Sbjct: 357 SGEKCPFIVAVDYSHTPDSLENILVESRKLKPNRVIVVFGCGGDRDRKKRPIMASIAEKY 416 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ADI+I+T DN R+E E+I ++I +G + + +R EAI AI+ + D++++AGK Sbjct: 417 ADISILTTDNQRTESIEQIMSDIENGFTHSNYKKIIDRKEAIFEAIKEAKENDIVIIAGK 476 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496 GHET I + + D ++ RE L I Sbjct: 477 GHETYQIFPD-KTIHFDDTEVAREALSNI 504 >gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase [Alistipes shahii WAL 8301] Length = 484 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 148/504 (29%), Positives = 235/504 (46%), Gaps = 32/504 (6%) Query: 2 KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 KL D++ E+ + I + DSR ++ G F A+ G + DGH +I Sbjct: 3 KLTDILKNTPVREVCGDTAAA--------IGGLVYDSRAVKPGDCFFAVPGTQSDGHDYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P A+ +GA AIV A ++V ++ ++ A+ Y ++ Sbjct: 55 PIAVEKGAAAIVCER------MPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A+ + + + G + I I + TTP I L + + Sbjct: 109 GITGTNGKTTTATLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH + Q R G+ G F+N+ DH+DYH+T Y AK LF + Sbjct: 169 ADAGCAYCFMECSSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKK-LFFDG 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + A+ ADD + +++ A + ++ ++ Sbjct: 228 LPKGAFALTNADDRNGRVMVQNTAAAVSAYSLRAMADFRCKIVEMHLDGMLLRIDGQELW 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F YN L G +G++ VL L LH V GRFE + + G Sbjct: 288 VGLLGRFNA------YNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAAN-GTT 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE +++ I I + ++IVV GCGGDRD+ KRP M IA+ A A+ Sbjct: 341 AIVDYAHTPDALENVIQTIEEIRTPGQQLIVVCGCGGDRDRTKRPEMAAIAVKYATTAVF 400 Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR E PE I +++ G+ ++ +R EAIRTA+ + D+++VAGKGHET Sbjct: 401 TSDNPRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKGHETY 460 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 IV + K D + I++ L+ Sbjct: 461 QIVGD-VKHPFDDREEIKKRFALL 483 >gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] Length = 495 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 157/503 (31%), Positives = 242/503 (48%), Gaps = 31/503 (6%) Query: 10 DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E+ N + ++ +I +++DSR +Q G +F + G K DGH F A + GA Sbjct: 2 TLNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A+VV + P L+V ++R +++ + R Y + + + VTGT+GK Sbjct: 62 AALVVERKLDVA---------IPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ +++I +G S+ IG + TTP + L + L+ ++ GV Sbjct: 113 TTTTYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSC 172 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-------RLFEELL 238 ++E SSH LDQ R G + G FTNL +DH+DYH T + Y AK + E Sbjct: 173 AMEVSSHALDQGRTWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAE 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + S A++ ADD+ S A + + + + Sbjct: 233 AERSYAVLNADDSASDLFANAAAVEILTYGI--DREADVRASDIRITSRGTTFRLETFRG 290 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + G+F VYNAL A + + GI + + LE L VPGR E V + Sbjct: 291 GADISIRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQ-PYAV 349 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE +L+ ++ GRII VFGCGGDRD+ KRPIMG+IA ADI ++T D Sbjct: 350 IVDYAHTPDGLENVLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSD 409 Query: 419 NPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPRSE+P I ++ G+ ++ +R AI A+EM + DV+++AGKGHET Sbjct: 410 NPRSENPHAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAGKGHET 469 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + D + E + Sbjct: 470 YQIIGP-KTFDFDDRLVAEEAIR 491 >gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] Length = 488 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 155/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + ++ DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q Sbjct: 15 DVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADSAQQHLQIHY 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 N P++ + LS A Y + + + VTGT+GK++ + Q Q G +S Sbjct: 75 EQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQWTQLLGHTS 134 Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G ++ TT S + + +L+ +QG ++E SSHGL QHR++G+ Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGLVQHRVEGVH 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A FTNL RDH+DYH + + Y AK RLF EL + ADD ++ NA Sbjct: 195 FSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQII--DADDPIGAAWLRELPNA 252 Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + Q +++ V H + + D + L G F V N L+ Sbjct: 253 VAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVSNLLLVTA 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G + ++ + KL V GR E + T + + VDYAHT ++LE L+ R Sbjct: 313 TLLTLGYSLSELVNSVNKLTGVCGRMEML-TATHKPTVIVDYAHTPDALEKALQAARLHC 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 G++ +FGCGGDRD+GKRP+M IA L+D I TDDNPR+ED +I A+I+ G Sbjct: 372 HGKLWCIFGCGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTEDHTQIMADILKGFINPQ 431 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R EAI TAI+ + DV+++AGKGHE I+ K D ++ R L Sbjct: 432 AVQVIHQREEAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKHHFSDQEVARHYLS 487 >gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] Length = 485 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 134/501 (26%), Positives = 222/501 (44%), Gaps = 27/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ +V DSR +Q G +F+ I G DGH F+ Sbjct: 1 MKLTALLEDLEYTCC-------QGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 P + +GA +VV + + +++V +TR ++ ++ +G + Sbjct: 54 PDVVKKGAGVLVVEEKVEAPE-------HVTVILVKDTRYAMACISAAYFGHPARRLKTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ V+ I + +G IG I TTP + K + Sbjct: 107 GVTGTKGKTTTTYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SS L HR G + G FTN+ DHI + F + L Sbjct: 167 ADAGCDCVVMEVSSQALMLHRTAGFEFDFGIFTNIEPDHIG--PNEHRDFQHYLECKSML 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 L + I+ DD + ++++K A K+ + + V Sbjct: 225 LRQCKVGIVNRDDKHFEQIIKGHTCALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +F +PG+F +YN+L A +C + + + ++ V GR E + + Sbjct: 285 MMNFQVEIDIPGKFSIYNSLTAIAICRHFKVS-EKDIVNALRVAKVKGRIEMIKVSDE-F 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + +LE +L +R R++ +FGCGG+R + +R MG+ + LAD+ I+T Sbjct: 343 TLMIDYAHNAMALESLLTTLREYHPHRLVCLFGCGGNRSKLRRYEMGETSGRLADLTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E P+ I +I GI +IE +R EAI AI D++++AGKGHE Sbjct: 403 SDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G+K + +I +IL Sbjct: 463 QEIE-GKKYPMDERVLIADIL 482 >gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 471 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 236/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + EN+ +AVTGT+GK++ + Q Q G +S +G Sbjct: 61 VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266 TNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ + V + + D + L G F V N L+A +A+ Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLTNLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI DV+++AGKGHE IV D +LG+I Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470 >gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 485 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKK 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF +L + I DD Y K Sbjct: 181 IGRVEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVI-NVDDEYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G + + + + + + + F L G+F +YN Sbjct: 240 LYDEFIVDNPEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFSLLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I ++ Sbjct: 355 ARNIKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] Length = 487 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 243/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D++YK + + +N++ DSR IQ +FVAI G DGH +I Sbjct: 2 MILKDILYKVTINAV-------VGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + I GA IV ++ + + V N+ K L+ A+ Y E ++ Sbjct: 55 DRVIDAGATTIVCE------VLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V+S + Q+ +++G + + + TTP + + + L + Sbjct: 109 GVTGTNGKTTVSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +GV +E SSHG+ Q R +G++ G FTNL DH+DYH T Y + K LF + Sbjct: 169 NDEGVEFCFMEVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKK-LFFDQ 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK++ A+ DD +++ Y + + + ++ Sbjct: 228 LPKDAFALSNMDDKNGLAMLQNTQAKKYTYALKNYADYRAQILENEFSG------LLLKV 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D + L G F YN L G +G++ +L + +L V GRF+ + Sbjct: 282 NDSELWTRLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQ-YFISDEKIT 340 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L+ +L+ I I + I V GCGGDRD+ KRP M IA L+ I Sbjct: 341 AVVDYAHTPDALKNVLETINNIRTKNEELITVVGCGGDRDKTKRPKMAHIASTLSTKVIF 400 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPRSE PE I ++ G+ + +R +AI+TA +M + +D++++AGKGHE Sbjct: 401 TSDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDIILIAGKGHE 460 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + GE+ D ++E+L Sbjct: 461 TYQEIK-GERFDFDDYKTVQELL 482 >gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase; AltName: Full=D-lysine-adding enzyme; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] Length = 490 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 234/501 (46%), Gaps = 28/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ + L + + +I VS+ S ++ G +F+ G K D H I Sbjct: 1 MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + +GA A+VV L + P + V ++R F + AS + +++L Sbjct: 56 PEVMEKGAVAVVVEREIDL---------DFPYIQVFDSRYFEAKVASLFFEDPWKDVLTF 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T + + + G + I + + +TTP I + A+ Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKEN 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L Q R++G++ G FTN+ RDH+D+H T + Y AK+ LF+ L Sbjct: 167 REGGGKFFALEVSSHALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + ++ + L + Q + Sbjct: 227 KDDGVAVLNES-------LADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPD 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 G+F YNA A +G D + LE V GRFE G G Sbjct: 280 GLLKVFTRAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDPE+I ++I GI ++ +R EAI TA+ + N+ D +V+AG+GHE Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ +K D +++ EI+ Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480 >gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-671] Length = 472 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 165/472 (34%), Positives = 241/472 (51%), Gaps = 14/472 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + +N+ + VTGT+GK++ + Q Q G +S +G Sbjct: 61 IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL RDH+DYH + Y AK L+ E AII ADD + + + +A Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ +V + + S D + L G F V N L+A +A+ Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R EA+ A+ + DV++VAGKGHE IV N D + +LG Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLG 468 >gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] Length = 500 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 157/504 (31%), Positives = 244/504 (48%), Gaps = 26/504 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ E ++ ++ E +I ++SDSR +FVA+ G DGH FI Sbjct: 4 LKRLL-----ERLDVSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGD 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A++ G++A+V + T ++V + R+ ++ A YG + I+ V Sbjct: 59 AVSLGSKAVVCE------ELPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ A + + G+ + IG + TTP L + S ++ Sbjct: 113 TGTNGKTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAE 172 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G V +E SSH L R GI +TNL +DH+D+H T ++Y +AK LF + Sbjct: 173 RGCRAVVMEVSSHALVLQRTFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGA-VS 231 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTI 293 E ++ ADD + + + + +VG K + A +V I Sbjct: 232 PEGFVVVNADDPRAGFMAENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAI 291 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G+ +D LF L G F V N L +A+G++ VL L V GR E V + Sbjct: 292 DADGRGYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAA 351 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 VDYAHT ++LE ++ + + G +IVVFGCGG+RD KR +MG+IA AD Sbjct: 352 GDFFAVVDYAHTPDALEKVIGTLNELKPEEGELIVVFGCGGNRDHEKRSVMGRIASRGAD 411 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T DNPR E+PE I +I GI PG++ +R EAI + +L + D+L+VAGKGH Sbjct: 412 RLIITSDNPRDENPESILDDIAEGIVSPGYMRFCDRAEAIHCGVNLLKEGDILLVAGKGH 471 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET G D + E++ Sbjct: 472 ETCQE-KAGASSFFSDRETTEEVI 494 >gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] Length = 487 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 249/504 (49%), Gaps = 33/504 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+ L+D+++ ++ + +N + DSR + G +FVAI G DGH + Sbjct: 1 MRALKDILFGVSITAVSGSTS-------VMVNSICFDSRIVTMGDVFVAIKGTITDGHEY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +AIA GA+ I+ + TI + + VDN K L++ AS Y + + Sbjct: 54 IEKAIALGAKTIICET------MPVTIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++++S + Q+ +++G I + TTP + + L Sbjct: 108 VGVTGTNGKTTISSLLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKL 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ GV +E SSHG+ Q R +G+ FTNL DH+DYH+T Y + K LF+ Sbjct: 168 MNDVGVEFCFMEVSSHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDN 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK++ + DD +++ Y + + ++ S Sbjct: 228 -LPKKAFVLTNVDDKNGLVMLQNTKARKYTYALKTYADYKAQILENQFNGQLLKIDGSE- 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 L G+F YN L G +G++ +L L +L V GRF++ + R Sbjct: 286 -----VWSKLIGDFNAYNMLAIYGTAQLLGLEKLEILRLLSELENVDGRFQYFISKER-I 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L I + +G I V GCGGDRD+ KRP+MG IA +++ I Sbjct: 340 TAIVDYAHTPDALKNVLDTINKLRTGNENVITVVGCGGDRDRSKRPVMGHIASEMSTTTI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E+P++I EI G+ + +R +AI+TA ++ N D++++AGKGH Sbjct: 400 FTSDNPRTENPDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET + NG + D ++++ +L Sbjct: 460 ETYQEI-NGVRAHFDDYEMVQNLL 482 >gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 502 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 153/508 (30%), Positives = 236/508 (46%), Gaps = 29/508 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L + + I + +I + +DSR I+ G +FV + G DGH +I Sbjct: 1 MNLKSLTERLILKTITGSTA-------VEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI GA AI+ + N + V +TR+ L + A+ +G E ++ Sbjct: 54 EHAIQNGAVAIMAEKELPE------LPGNITRITVPDTRRVLPILANSFFGNPTEQLKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V ++ S + IG I + TTP I L + + Sbjct: 108 GITGTNGKTTTTHMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 + G T+ +E SSHGLD R+ G FTNL DH+D+HQ ++Y N K LF + Sbjct: 168 VAHGGTYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQL 227 Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + ++ ADDA S KR + + + + Sbjct: 228 GNSDRDMQKKVVLNADDAASSYYGKRTSAQIVTYGIHNPADV--RALHIQNTGDGCRFIV 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 DF + G VYNAL A C+ GI + L+ V GRF+ + T+ Sbjct: 286 ETPWGSSDFTMKVYGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKTDR 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R+ VDYAH + L+ L + + ITSG++I V GC G+RD+ KRPIM IA +D Sbjct: 346 S-FRVVVDYAHNPDGLKATLLSAKEITSGKMICVMGCRGERDRLKRPIMADIAASYSDYV 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + T DNP SEDPE+I AE++ G+ + NR +AI+ A+EM QD +++ G+G Sbjct: 405 LFTTDNPFSEDPEQIIAEMLGGLSSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITGRG 464 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496 HET V + D +++ L ++ Sbjct: 465 HET-RYVAGSQVDSFSDEEVVLSSLQVM 491 >gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] Length = 496 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 154/499 (30%), Positives = 235/499 (47%), Gaps = 21/499 (4%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL + + + + +I + DSR G +FV I G D H FIP A G Sbjct: 3 KRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++ + +L V + ++ L L Y ++ +TGT+G Sbjct: 63 ARAVLTERD------KVAVPPGISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + V+ + + +G IG + TTP I + + L+ + ++G+ Sbjct: 117 KTTTSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDA 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241 V +E SSH LDQ R+ GI+ FTNL +DH+DYH+T + Y AK RLF+ E KE Sbjct: 177 VVMEVSSHALDQGRVAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKE 236 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I D + ++M+ + V K + + Sbjct: 237 GKTAILNADDAAAKMMRAHTHCPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPA 296 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G F VYN L AAG +A + ++ + L VPGRFE V + VD Sbjct: 297 VQTGITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRAGQ-DFSVIVD 355 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + +E +L+ R +T+GRII VFGCGGDRD+ KRPIMG+IA +L D+ ++T DNPR Sbjct: 356 YAHTPDGMENVLRTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPR 415 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP I E+ G+ + + +R AI A++ D +V+ GKGHET I+ Sbjct: 416 TEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKGHETYQIL 475 Query: 476 TNGEKKMSVDCDIIREILG 494 +G D + E + Sbjct: 476 KDGT-IHFDDRETAAEAIR 493 >gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 488 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 151/466 (32%), Positives = 231/466 (49%), Gaps = 14/466 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ AY ++ + Sbjct: 15 RDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAV----AYEVEGSNVL 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P++ V LS A R YG N++ VTGT+GK+SV V Q G Sbjct: 71 PLTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQR 130 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T Q R TTP PI + L+ L G V++E SSHGLDQ R + Sbjct: 131 CGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAL 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TNL RDH+DYH T +AY AK +LF + DD + +++ Sbjct: 191 AFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINL--DDDFGRQMAGLKQE 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + S +++ ++ + + T+ + L G F + N L A G Sbjct: 249 SRLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R G Sbjct: 309 LGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKG 367 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 R++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPR+E +I A+I G Sbjct: 368 RLLCLFGCGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFADIRPGFTAADKV 427 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R +AI I + DV+V+AGKGHE + +G+++ D Sbjct: 428 SFIEGRAQAIAELIAGASADDVVVLAGKGHEDYQEI-SGQRQPFSD 472 >gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 4343-70] gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-218] Length = 495 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DS AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 54 QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+ Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG I Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494 >gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 471 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 161/474 (33%), Positives = 235/474 (49%), Gaps = 14/474 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + EN+ +AVTGT+GK++ + Q Q G +S +G Sbjct: 61 VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266 TNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ + V + + + + L G F V N L+A +A+ Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ I DV+++AGKGHE IV D +LG+I Sbjct: 418 EGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470 >gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 489 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 244/474 (51%), Gaps = 18/474 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR ++ G ++VAI G + DGH FI +A+++GA +V SL D + Sbjct: 17 IRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVP----PD 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146 P + V + R+ S ++R+YG + ++ VTGT+GK++ ++ + + +G+ Sbjct: 73 VPYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGML 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +LTT L +AL + G TH +E SSHG+ QHR + Sbjct: 133 SSVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDL 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL R+H+D+H + + Y AK RLF L ++ AI+ DD Y+ + + N Sbjct: 193 AIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAE---NCVAP 249 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAI 325 +++ G + + + V + +V+I + + + + PG + +YN L + Sbjct: 250 IVTYGVRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAAYVL 309 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + + + L +PGR + G + VDYAHT ++L IL R TSGR+ Sbjct: 310 GVSADDIAGVIPTLPTIPGRMHVIRPEH-GPTVIVDYAHTPDALRQILSTARQWTSGRVW 368 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI----- 440 +VFG G+RD+GKRP MG IA +AD ++T D+ SEDPE+I EI+ G Sbjct: 369 LVFGGRGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIANEILAGAQRVHRARCD 428 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R +AI A+ N +DV+++ G+GHE+ +V G + D D++RE L Sbjct: 429 VVLDRAQAIERAVIEANDEDVILITGRGHESFQVVG-GLRLEQTDADMVREALS 481 >gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132] gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans ND132] Length = 507 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 146/477 (30%), Positives = 226/477 (47%), Gaps = 17/477 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR IQ G FVA+ G G +IP A+ GA IV A + + Sbjct: 33 VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 VDN L A + ++A+TGT+GK++ + ++ + SGL +G Sbjct: 93 -YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTV 151 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + F D LTTP + + L + V +E SSH LDQ+R+ G+ A F Sbjct: 152 NYRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVF 211 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH + YF AK +LF E A++ DD Y + ++ + Sbjct: 212 TNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIGYGIG 271 Query: 270 VGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + + ++ S +GK + PL G F N L A + Sbjct: 272 DASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAAQAVG 331 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + +G++ + L VPGR E V N + I+VDYAHT ++L+ + + + + Sbjct: 332 LQLGLNCKD-MRRLSTFPGVPGRLERV-MNDKNLDIFVDYAHTPDALDNVQRTLAALDFK 389 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGF 439 R+I VFGCGGDRD+ KRP+M A AD+A++T DNPR+EDP I + + G Sbjct: 390 RLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDARPGLAGAKRV 449 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +E +R EAI+ A+ + D L++AGKGHE I+ K+ D + + + + Sbjct: 450 MENPDRTEAIKMAVAEMEPGDALLIAGKGHEDYQIIGT-TKRHFSDKEAALKAIEEV 505 >gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] Length = 506 Score = 302 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 150/500 (30%), Positives = 233/500 (46%), Gaps = 20/500 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F E++ ++ ++ + V DSR G +FVA+ G DG+ ++ A+ GA A Sbjct: 3 FEEIVRGVTTLAVRLAPVDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGAVA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ S +D ++ RS+ + +V+ R+ L+ ++ +G + + AVTGT+GK++ Sbjct: 63 VLTDSPTVFEDLTS--RSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A ++ + + S +G T + + TTP + + + G T + Sbjct: 121 TAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAVM 180 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-RLFEELLPKESPAII 246 E SSH L Q R+ G+ L FTNL +DH+DYH T Y AK A+I Sbjct: 181 EMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRIAVI 240 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 ADD + +++ A VG V + + + Sbjct: 241 NADDPSAGMMVEAASGCEVWTYRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMGERV 300 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G VYN + A +A G+ + +L VPGRFE VG N G + VD Sbjct: 301 VRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGRFETVG-NDLGITVVVD 359 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAHT ++L ++ R + GR+I +FGCGGDRD+ KRP MG+ A D +D+ IVT DNP Sbjct: 360 YAHTDDALRNLIGLARELVGEGRVITMFGCGGDRDRTKRPKMGRAAGDGSDLVIVTSDNP 419 Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 RSEDP I A+++ G+ + NR AIR AI + D++++AGKGHE + Sbjct: 420 RSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLAGKGHEREQVSR 479 Query: 477 NGEK---KMSVDCDIIREIL 493 G D R L Sbjct: 480 QGSILVSVPFDDVMEARAAL 499 >gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] Length = 479 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 227/479 (47%), Gaps = 18/479 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSA 84 + + +S DSR ++ G F A+ G++E G + +A+ +GA +V S+ + ++ Sbjct: 2 PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 + P V + + L A+R +G E ++AVTGT+GK+S F+ + Q Sbjct: 62 GLGFAVP---VRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHP 118 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++ + + TTP I + L+ L +QG ++EASSHG Q R++G+ Sbjct: 119 TAVIGTLGWGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +T + RDH++YH T ++Y AK+ L + + DD +++ Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALE--FVAVTLDDPSVDAILRSVPA 236 Query: 263 AGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + ++ + + + G+ + P+ G+F N L Sbjct: 237 GVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLLG 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + +G + + ++ VPGR E N G + VDYAHT ++L +L ++R Sbjct: 297 TLAVLVGLGYPAEAAASRVGRVRPVPGRMERFREN--GLTVIVDYAHTPDALRNVLTSLR 354 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 R+ VVFGCGGDRD+GKRP MG IA +AD IVTDDNPRSE + I +I+ G Sbjct: 355 RHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDILAGCG 414 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R AIR AI D+++VAGKGHE V G D + +R+ L Sbjct: 415 ETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVA-GVFYEFSDREEVRKALS 472 >gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 485 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKK 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF +L + I DD Y K Sbjct: 181 IGRVEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVI-NVDDEYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G + + + + + + + F L G+F +YN Sbjct: 240 LYDEFIVDNPEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFLLLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I ++ Sbjct: 355 ARNIKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] Length = 487 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 151/490 (30%), Positives = 241/490 (49%), Gaps = 19/490 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL L R+ KI + +DSR G +F+A+ G+ G F+ A+A+GA Sbjct: 8 LSELCADLGYC---VRDAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASG 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSS 128 I+ +L D + ++VV + R + A R + K LAVTGT+GK+S Sbjct: 65 IIADEEMNLPD-------HIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTS 117 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + Q+ ++ +G + TTP + + + L+ ++Q V ++ Sbjct: 118 TVQLLAQLLGELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAAL 177 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL QHRL G+ + + TN+ +DH+DYH T Y AK ++ L ++ Sbjct: 178 EASSHGLVQHRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQILA--LSGLRAVVLD 235 Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D+ + + + N ++G + + T+ ++G ++ PL Sbjct: 236 LDNPEVRALRPQVPANVQVLGFTLGEVADADAVVVAQYDADGTTATVRLDGFEYRLRLPL 295 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 GEF + N L A + A G+ ++ +L VPGR E VG +S +YVDYAHT Sbjct: 296 VGEFYLRNTLTALFMLRAEGLRFEDLVAAAGRLRGVPGRLERVGLDS-DVAVYVDYAHTP 354 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++ +L+ +R + VVFGCGGDRD+ KRP+MG+ A + AD ++T DNPR+EDP Sbjct: 355 DAIARVLQVLRPTVKNDLWVVFGCGGDRDKSKRPLMGRAAAEGADWVVLTSDNPRAEDPS 414 Query: 427 KIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 KI +I G + +R AI +AI + D LV+AGKGHET I+ + D Sbjct: 415 KILDDIQVGCAHARLVIEDRAVAIESAIMAASPGDTLVIAGKGHETEQIIGD-VAFPFSD 473 Query: 486 CDIIREILGL 495 ++ + L L Sbjct: 474 REVAQAALNL 483 >gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetospirillum magneticum AMB-1] gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magneticum AMB-1] Length = 478 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 196/472 (41%), Positives = 264/472 (55%), Gaps = 7/472 (1%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 R+ I +++DSR ++ G++F A+ G K DG FIP A A + + + Sbjct: 7 ARDVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPA-----ALAAGAVAVLAPEGSRP 61 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ N R+ +L AS +G P + AVTGT+GK+S A F +QI R G ++ Sbjct: 62 DLPPEVVLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAA 121 Query: 145 FQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + + LTTP P L L+ L+ GVTH +EASSHGLDQHRLDG++ Sbjct: 122 AAIGTLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L+A +FTNL RDH+DYH AY AK+RLF E+LP+ + A+I AD + ++ Sbjct: 182 LMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKR 241 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G VL G + + L + Q++ + + G+ PL G FQ NAL A GL + Sbjct: 242 GITVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLAL 301 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G D LE L L VPGR + V + + G IYVDYAHT ++LE +LK +R + R Sbjct: 302 ACGADPVAALEALGHLDGVPGRLQQVASRANGAPIYVDYAHTPDALETVLKALRPHAARR 361 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++ VFGCGGDRD GKRP+MG I LAD IVTDDNPRSEDP IRA + P IE Sbjct: 362 LVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIA 421 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R AIR A+ L K DVLV+AGKGHE IV D R+ + L Sbjct: 422 DRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIVGASV-LPFDDAAEARDAVRL 472 >gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] Length = 486 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 243/472 (51%), Gaps = 19/472 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G +FVAI G DG F+PQA+ +GA IV + Sbjct: 24 VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAE--------L 75 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + R+ L A + ++ +TGT+GK++ ++Q+ +G+ +G Sbjct: 76 ISHPSPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTV 135 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S + Q+ LTTP L + L+ + GV +E SSH L Q+R+ G+K A Sbjct: 136 SYRWPGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDAAVI 195 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ +DH+DYH + YF AK LF+ II DD + + +++ A + Sbjct: 196 TNVTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLECYSPAIGYGMD 255 Query: 270 VGYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L V + ++ ++ +G+ ++ L G+F N L A + + +G+ Sbjct: 256 ASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMGL 315 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + ++ VPGR E V N +G I+VDYAHT ++L+ +L+ ++ + ++I V Sbjct: 316 TPKQ-MNVFKEFDGVPGRLERVR-NDQGLNIFVDYAHTPDALDNVLRTLKDLDFNKVITV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444 FGCGGDRD+ KRP+M + A +D+A++T DNPR+EDP +I + + G IE+ + Sbjct: 374 FGCGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKGCDHVIEEVD 433 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R +AIR A+ + + DVL++AGKGHET I+ EK+ D + + + + I Sbjct: 434 RADAIRKAVAEMTEDDVLLIAGKGHETYQIIGT-EKRDFSDSEEVLKAIKEI 484 >gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. B100] gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris] Length = 495 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 155/486 (31%), Positives = 221/486 (45%), Gaps = 12/486 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++QL R+ +++ + DSR ++ G FVAI G G F QA+A GA AI+ Sbjct: 6 ALSQLLPDVALARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILF 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVAS 131 + V R L + A +G + ++ VTGT+GK+S Sbjct: 66 EPPAPADLPVPADA-----IAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQ 120 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q G + IG A TTP + L+ L G V++E S Sbjct: 121 LLAQALTLLGTPTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVS 180 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH LDQ R+D ++ FTNL RDH+DYH Y AK +LF + + + Sbjct: 181 SHALDQGRVDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRAAVVNLDDAF 240 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V S G + + + H+ Q T+ + PL G F Sbjct: 241 GRTLFAALDPALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRF 300 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L AG A+ I A + E L +L + GR +G + VDYAHT ++LE Sbjct: 301 NVDNLLAVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALE 360 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L ++R+ R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A Sbjct: 361 QALTSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVA 420 Query: 431 EIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I+ G I + +R AI AI M D++++AGKGHE V G + D Sbjct: 421 DILRGFARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHEPYQEVA-GVRHAFDDAA 479 Query: 488 IIREIL 493 + + L Sbjct: 480 VAAQAL 485 >gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] Length = 489 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 151/492 (30%), Positives = 240/492 (48%), Gaps = 20/492 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L L+ F + + + DSR I+ G F+AI G+ +DG LF+ A+A GA Sbjct: 3 ADLAPILARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIA 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 +V ++ I+ V K L+ +++ YGK E + + VTGT+GKS++ Sbjct: 63 LVDEQCE------CTFASDKIIRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKSTI 116 Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 S + + Q G S IG TTPS + L L L V++E Sbjct: 117 TSMIAYLAQVCGSKSAVIGTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAME 176 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q R+ + A F+NL RDH+DYH Q+Y +AK+ LF E P+ S Sbjct: 177 VSSHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEISVINQ-- 234 Query: 249 DDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD +K + + V G + G+++ V + + + Sbjct: 235 DDEVAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKC 294 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G+F +YN A +A+G L+ + + KL V GR + ++ VDYAH Sbjct: 295 PLYGQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTC-VVDYAH 353 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L + L+ ++ G++ VFGCGG+RD+GKR +M + A A+ IVT DNPR+ED Sbjct: 354 TPDALALALQALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFANKIIVTSDNPRNED 413 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I A+I+ G + + +R +AI+ AIE ++V+++AGKGHE ++ + Sbjct: 414 PKAIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKGHEDYQLIGT-QVL 472 Query: 482 MSVDCDIIREIL 493 D + + L Sbjct: 473 PFCDRAQVVKYL 484 >gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 504 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 159/513 (30%), Positives = 236/513 (46%), Gaps = 36/513 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +I + +I V+ DSR + G +F A+ G + DGH F Sbjct: 9 MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A +GA A+V + + + F A RL + AV Sbjct: 61 AEAARRGAVAVVAERPVECAPARLLLAPSARRAMALAAASFCGRPAERL------RMAAV 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V V+ + + + +G S + TTP + L+ + Sbjct: 115 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGAERPASHTTPESTAIQAVLAEMVE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +E SSH L Q R+ GI+ A FTNL RDH+DYH+ +AYF AK RLF E L Sbjct: 175 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLA 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I A D + + + G G + +V T Sbjct: 235 PGGTAVINARDPWGARLADQLGPGPRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGA 294 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G+ + N L AAGL + +G+ V L H PGR E + RG ++ Sbjct: 295 IAIRSPLVGQHNLENLLCAAGLALGLGLPPEAVARGLAASHGAPGRLER--IDGRGLSVF 352 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L ++ +R ++ R++ VFGCGGDRD+GKRP+MG A AD+AIVT DN Sbjct: 353 VDYAHTDDALARMIAALRGLSPRRLVCVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462 PR+EDP I A+++ G+ ++ + +R AI A+E + D + Sbjct: 412 PRTEDPLAIIADVLPGLDRAGKPAIGAARARAGEDGYVVEPDRRAAIALAVECAREGDAV 471 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +VAGKGHE V E++ D D R+ LG+ Sbjct: 472 LVAGKGHEDYQQVGA-ERRPFSDRDEARKALGI 503 >gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus NA1000] gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Caulobacter crescentus NA1000] Length = 486 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 205/500 (41%), Positives = 279/500 (55%), Gaps = 28/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL + F + I V++DSR + GW+F A+ G K DG F Sbjct: 4 RLSDLFNRPFA-------------TDPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAE 50 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+A+GA AI+ P++ ++ R+ +L A+ +GK P +AVT Sbjct: 51 GAVAKGAAAILAPEGG-------LEGLGVPVVRSEDARRAYALAAAAFWGKQPAMCVAVT 103 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKAL 174 GT+GK+SVA F +QI + G + +G LTTP +A+ + Sbjct: 104 GTNGKTSVAGFCRQIFTKLGHKAASMGTLGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMI 163 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L+ GVTH+++EASSHG+DQ R+DG+KL A FTN +DH+DYH + +AY AK+RLF Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRIDGVKLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L P + A++ AD + A +G V SVG +G+ + L Q + + Sbjct: 224 DTLTPAGAMAVLNADSEAFPDFAAAAVTSGQSVFSVGEEGQGLRLLSRTPTPAGQDLVVE 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 EG PL G FQ N LVAAGLCIA G DSA VL+ LE L GR + VG + Sbjct: 284 AEGVVHHLKLPLAGAFQASNVLVAAGLCIAAGEDSAKVLKALETLEGAAGRLQRVGRGPK 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 GG YVDYAHT + L+ +L+ +R T+G++I VFG GGDRD+GKRP+MG I LADIAI Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTAGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 VTDDNPRSEDP IRA I+ PG E G+R AIR A+ ++++ DVLVVAGKGHE I Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVALMSEGDVLVVAGKGHEQGQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V G D + L Sbjct: 464 VA-GVVHPFDDVAETLQALE 482 >gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nostoc sp. PCC 7120] gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Nostoc sp. PCC 7120] Length = 496 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 167/500 (33%), Positives = 251/500 (50%), Gaps = 17/500 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++ + P + ++ + ++S AG +F+ + G + DG F Sbjct: 1 MKLRELLA-----TVDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA GA A +VS ++ ++ +N K + A+ YG + + + Sbjct: 56 PSAIASGAIAAIVSPQAVEKNPP---HDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ ++ LS+ +G F Q TTP + L + L+ Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +E SSH L Q R+ G G F+NL +DH+DYH + YF AK LF Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPE 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AII ADD Y + ++K SV + + + N TI Sbjct: 233 -YLKGRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 + F PL G++ + N L A G + +G++ L+ + + VPGR E V N + Sbjct: 292 GNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDI 351 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKI +LAD+A VT Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELADLAFVT 411 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I +I+ GIP + G+R AIRTAI D +++AGKGHE Sbjct: 412 SDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ EK D + R L Sbjct: 472 ILGT-EKIHFDDREHARAAL 490 >gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 492 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 145/504 (28%), Positives = 238/504 (47%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L S +E + ++++S+ + G +F+A G DG+ +I Sbjct: 1 MKLKELFRNIE-------SCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AI GA AI+ ++ N + S+ A Y E ++ Sbjct: 54 KEAIQSGACAILTD-------LFDPCLKKVVQIIHPNPNEIESILARDYYQNSSEELFMV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++++ ++ + IG I S TTP I K L + Sbjct: 107 GITGTNGKTTISFIIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----- 232 S G +E +SH L Q R++ I F+NL DH+DYH T + Y AK Sbjct: 167 SLSGTKSAVMEVTSHALIQKRVEYIDFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGL 226 Query: 233 -LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 E AI+ DD + ++++K R+ + + + + Sbjct: 227 GEQPTKKRNEKWAIVNIDDPWCEQIVK--GCQAHRLTYGIDKPADLQASHIKLSSQGTSI 284 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ +G+ + +PL G F +YN L A G+ + I ++E + + V GR E V Sbjct: 285 NLTYQGQTIECFWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKV-L 343 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N+ IY+D+AHT ++L +LK + I GR++ +FGCGGDRD KRP M + +D Sbjct: 344 NNLELDIYIDFAHTDDALSNVLKTLSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYSD 403 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++IVT DNPRSE+P I EI+ G FI + +R AI+ AIE+ + D++++AGKG Sbjct: 404 LSIVTSDNPRSENPISICQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKG 463 Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492 HET I+++ + D + EI Sbjct: 464 HETYQILSH-QIIEFDDAKVAAEI 486 >gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] Length = 491 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 134/501 (26%), Positives = 222/501 (44%), Gaps = 25/501 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ K +++ +++ + +DSR + G FV I G DGH FI Sbjct: 1 MKLKDLLTKLEYKVVKGSDT-------IEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +++GA + + + ++ VD+TR L+ ++ +G E ++ V Sbjct: 54 RDVVSKGA-------VAVVVMEDVEVDEDVTVVKVDDTRLALACMSADYFGNPAEKLITV 106 Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 T K + + G+ + IG TI + TTP + + + + Sbjct: 107 GITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG V +E SS GL HR+ G G FTN+ DHI ++ + + Sbjct: 167 VEQGCKCVVMEVSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCKSMLLK 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K + A D + + + ++ Y K +K Sbjct: 227 QCKHGIVNMDA-DFIDRVLEGHTCDIETYGVNGDYDFKAQDIKLFTKPGCLCVSYDLKGK 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 DF +PG F VYN+L A +C D + LE + V GR E + + R Sbjct: 286 MDFPVEIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKV-KGRVEIIPISKR-FT 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH + SLE +L +++ R++ VFGCGG+R + +R MG+++ L+D IVT Sbjct: 344 LMIDYAHNAMSLESLLTSLKQYNPKRLVTVFGCGGNRSKERRFEMGEVSSRLSDFTIVTS 403 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR E+P I +I+ G+ ++ +R +AIR AI DV+++AGKGHE Sbjct: 404 DNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGKGHEDYQ 463 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + G K + +I+EI+ Sbjct: 464 EIK-GVKHPMDERVLIKEIME 483 >gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena XCL-2] gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiomicrospira crunogena XCL-2] Length = 505 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 149/507 (29%), Positives = 244/507 (48%), Gaps = 20/507 (3%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L D++ F +L S+ E ++ ++ DSR ++ G F+A+ G + G Sbjct: 1 MKQLADILS--FFKL--PESVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMAH 56 Query: 60 IPQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 QAI QGA I+ A ++ + P++ V + + L+ FA Y E Sbjct: 57 AEQAIKQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSER 116 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 N++ VTGT+GK+S + ++ Q+ +G + TT + L Sbjct: 117 VNVIGVTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNHL 176 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + + +V +E SSH ++ R+ GI + T + RDH+D+H+T++AY AK +L Sbjct: 177 LNGFAEEQADYVVMEVSSHAIELGRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKL 236 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVT 292 F + ADD + + N V + + T Sbjct: 237 FLTYSSRYQVIN--ADDKVGQALFHELSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHGT 294 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +++G F PL G+F + N L A + A G + + + L + V GR E + Sbjct: 295 FTLQGGSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELLTQP 354 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDL 409 + +DYAHT ++LE ILK ++ S R + VVFGCGGDRD GKRP+MG+IA Sbjct: 355 GYPS-VLIDYAHTPDALEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEIAETY 413 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 A+ ++TDDNPR+E P+ I A+I G+ +R EAI AI+ + D++V+AGKG Sbjct: 414 ANEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAGKG 473 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495 HE + G++ D I++++L + Sbjct: 474 HEDYQEIQ-GKRWPMSDQKIVKDLLSM 499 >gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC 35316] gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cancerogenus ATCC 35316] Length = 471 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 237/472 (50%), Gaps = 14/472 (2%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR +G +FVA+VG++ DG +IPQAIAQG A++ + D P++ Sbjct: 3 LDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIY 62 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + LS A R Y + + ++ VTGT+GK++ + Q Q G + +G Sbjct: 63 LSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGN 122 Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 TT S + + L+ L+ QG + ++E SSHGL QHR+ +K A FTN Sbjct: 123 GLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTN 182 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RV 267 L RDH+DYH + Y AK L+ AI+ ADD + + + +A Sbjct: 183 LSRDHLDYHGDMEHYEAAKWLLYS--THHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDH 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G+++ +V + ++ + + L G F V N L+A +A+G Sbjct: 241 INPNCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A +L+ E+L V GR E + + VDYAHT ++LE L+ R +G++ V Sbjct: 301 PMAELLKTAERLQPVCGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCAGKLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I+ G+ Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAGRARVVEG 419 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI + DV+++AGKGHE IV N D +LG++ Sbjct: 420 RAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDY-SDRVTAARLLGVV 470 >gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] Length = 498 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 143/503 (28%), Positives = 227/503 (45%), Gaps = 26/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D + EL+ E ++++VS DSR + G +FV + G + D HLFI Sbjct: 1 MVLSDWLEGLDYELLQGS-------LEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ G IV+ L++ + +L V + R+ L+L ++ +G ++ V Sbjct: 54 PQVEEAGVRVIVIERP--LEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITV 111 Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T K ++ I + +G IG T I N TTP L +A + + Sbjct: 112 GVTGTKGKTTTTHMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++ +E SS G+ HR DG+ G FTN+ DHI + A F + L Sbjct: 172 VEAGCEYMIMEVSSQGIKMHRTDGLFFDYGLFTNISPDHIG--PDEHADFGEYLYYKSRL 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 + ++ D + + ++K A G + + ++ + E Sbjct: 230 MTMCKVGLVNRGDEHYEGIIKDASCRLYTYCVAEGDGASADFEARNIRYVAEENFVGTEF 289 Query: 297 ----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 D +PG F V NAL A LC +G+D + H + + GR E V T+ Sbjct: 290 DVTGWLSMDVRLGIPGLFNVDNALAAMSLCSFMGLD-KQRMSHALEHIRINGRMEIVHTS 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 R + VDYAH + S+E +L +R R++ VFGCGG+R + +R MG+I +AD+ Sbjct: 349 KR-CTVLVDYAHNAVSMESLLGTLRNYHPKRLVCVFGCGGNRSKDRRYSMGEIGGRMADL 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T DN R E PE I A+I I F+E +R +AI +IE D++ + GKG Sbjct: 408 CILTADNSRYEKPEDIIADIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMIAIIGKG 467 Query: 469 HETVHIVTNGEKKMSVDCDIIRE 491 HE + G + +D ++I E Sbjct: 468 HEDYQEIC-GVRHHFLDREVIEE 489 >gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda FL6-60] Length = 469 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 229/472 (48%), Gaps = 14/472 (2%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR AG +FVA+VG+ DG FIPQAIAQG A++ + +D S P++ Sbjct: 1 MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + + LS A R YG+ ++ VTGT+GK++ + Q Q G + +G Sbjct: 61 LSHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120 Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TT S + + L L+ G T V++E SSHGL Q+R+ + A +FTN Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268 L RDH+DYH + Y AK RLF E ADD + + + +A + Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIIN--ADDETGRRWLDKLPDAVAVTVSGA 238 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ G+++ + V + L GEF V N LVA +A+G Sbjct: 239 LPAGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGY 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + +L V GR E + VDYAHT ++LE L R G + + Sbjct: 299 PLAALCAASGQLQPVCGRMEVF-QAPGKPTVVVDYAHTPDALEKALLAARLHCQGLLWCL 357 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+P I EI+ G+ + Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ QDV++VAGKGHE +V N D + +LG++ Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 468 >gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] Length = 483 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 148/501 (29%), Positives = 234/501 (46%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ ++ ++ ++ + DSR + G IF+A G + DG+ F Sbjct: 1 MNLKELLQGISAKIYGKVPTL-------EVRNFTRDSRCVGVGDIFIACRGEQHDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ +GA AI+ S + +V + + A++ YG+ E + Sbjct: 54 ADAVERGAIAILSS--------FYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVF 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++ + S + IG I + + TTPS L K + + Sbjct: 106 GVTGTNGKTTVTYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V++E SS GL+ +R G TN+ DH+D+H T + Y AK +LF + Sbjct: 166 VKNRRKAVAMEVSSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQ- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK A+I AD Y+ A + + + + T+ G Sbjct: 225 LPKNGCAVINADSPYASRFCSIASSRCVTYGI--EEAAEYRACDLQLSLLGTRYTLVHRG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K + PL G + VYN L A + +L LE + GR E S Sbjct: 283 KSYLCKSPLIGRYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLE--PVFSGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ +L ++ + GR+I+VFGCGGDRD+ KR +M ++A +I Sbjct: 341 PIYIDYAHTPDALDNVLATLKELMSCQGRVIIVFGCGGDRDRSKRKLMARVAERYG-FSI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR EDPE I EI G + + +R +AI AI M + +DV+++AGKGHET Sbjct: 400 VTTDNPRKEDPEVIIHEICEGFTSQKYCVEQDRKKAILRAISMASDKDVVLIAGKGHETY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D ++ E+L Sbjct: 460 QIFKHQT-LYFSDKQVVNEVL 479 >gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] Length = 486 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 142/504 (28%), Positives = 233/504 (46%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ P + +I + +D+R + G +FV I G DGH F Sbjct: 1 MELHKLLRFLQP-------YMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDF- 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A + + + P++VV NT++ +++ A YG+ + +++ Sbjct: 53 --------AASAAKKGAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + +++I +G + IG I+ + + TTP + L + Sbjct: 105 GITGTNGKTTTSHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + GV +E SSH LD+ R+ G FTNL +DH+DYH+T Y AK Sbjct: 165 ADAGVDSAVMEVSSHALDEGRIHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQL 224 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + AI+ +DD S E K Q + + + Sbjct: 225 GSSYNHEEPKYAILNSDDPASAEYEKSTAAHVISYGI--DQEADLRAINIQMTSGGTEFD 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + G+F +YN L + G IA GI + +++ E++ V GRFE V Sbjct: 283 LISPFGKHKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDY+HT +SL+ L+ ++ RI + GCGGDRD+ KRP+M +IA + Sbjct: 343 Q-DFSVIVDYSHTPDSLKNALETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYSTD 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I T DNPRSEDP +I ++ G+ G + +R EAI A++ +K DV+++AGKGHE Sbjct: 402 PIFTSDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 T V N + D + +E + Sbjct: 462 TYQQVGN-QVFDFDDRLVAKEAIE 484 >gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] Length = 534 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 164/516 (31%), Positives = 246/516 (47%), Gaps = 39/516 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +I + +I V+ DSR + G +F A+ G DGH F Sbjct: 38 MKLSAVIQGT--------GARGEAADDHEIVLVTGDSREVVPGALFFALPGAVRDGHDFA 89 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA A+GA AIV + + +L+V ++R+ +++ A+ +G+ + + Sbjct: 90 AQAAARGAVAIVAERPVACAPAA--------LLLVPSSRRAMAVAAANFHGRPADALRVA 141 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V V+ + + L +G T + TTP L L+ + Sbjct: 142 GVTGTNGKTTVTYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEM 201 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G V +E SSH L Q R+ G++ A FTNL RDH+DYH AYF AK RLF E Sbjct: 202 RAAGTRAVVLEVSSHALAQERVGGMRFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEH 261 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + A++ A D Y + + + + V T + Sbjct: 262 LAPDGVAVVNARDPYGARLAAQLGPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATPA 321 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 PL G + N L AAGL +A+GI V L PGR E + RG Sbjct: 322 GPIAIRSPLVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGRLER--IDGRGVS 379 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I+VDYAHT ++L L+ +R + R++ VFGCGGDRD+GKRP+MG++A AD+ +VT Sbjct: 380 IFVDYAHTDDALGRALEALRALAPRRLLCVFGCGGDRDRGKRPLMGEVAARGADLVVVTS 439 Query: 418 DNPRSEDPEKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQD 460 DNPR+E PE I A+++ G+ GF+ + +R AI A+ + + D Sbjct: 440 DNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHPGD 499 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 ++VAGKGHE +V K D + R+ LG + Sbjct: 500 AVLVAGKGHEDYQLVGT-TKHPFSDREEARKALGFV 534 >gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila RKU-1] gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga petrophila RKU-1] Length = 490 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 140/501 (27%), Positives = 234/501 (46%), Gaps = 28/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ + L + + +I VS+ S ++ G +F+ G K D H I Sbjct: 1 MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + +GA A+VV L + P + V ++R F + AS + +++L Sbjct: 56 PEVMEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTF 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T + + + G + I + + +TTP I + A+ Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKEN 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L Q R++G++ G FTN+ RDH+D+H T + Y AK+ LF+ L Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + ++ + L + + + Sbjct: 227 KDDGIAILNES-------LADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPD 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 G+F YNA A +G D + LE V GRFE G G Sbjct: 280 GLLRVFTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDPE+I ++I GI ++ +R EAI TA+ + N+ D +V+AG+GHE Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ +K D +++ EI+ Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480 >gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum rubarum] Length = 509 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 239/480 (49%), Gaps = 18/480 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83 K+ +S DSR ++ G +F+ G F+ +A+ +GA +V S S Sbjct: 28 KVLSLSDDSRQVENGALFLIRPGEGFR-WEFVDEALDRGASYLVADRKAFPEIDSRPALS 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141 + IR + + +V+N + + AS +G ++ VTGT+GK++ + + +C+ G Sbjct: 87 SRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRSVCRAGG 146 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L IG + + TTP I + + G+ VS+E SSH LDQ RL Sbjct: 147 LPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDRLA 206 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPAIIYADDAYSKEVMK 258 G FTNL RDH+DYH+T +AYF AK + ++E A+++ D Y + K Sbjct: 207 GTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARLAK 266 Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 G RVL+ G I +V + + T+ + L G + + N L Sbjct: 267 ELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G A+G+ + E + L VPGRFE V + G + VDYAHT ++L +L +R Sbjct: 327 AVGCGEALGLSMEKIAEGIHSLPGVPGRFERV-DSPTGFSVIVDYAHTDDALSNLLSAVR 385 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +T G++I VFGCGGDRD+GKRP MG +A L+D ++T DNPR+E+PE I EI G+ Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEIEPGLR 445 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ +R AI AI D +V+AGKGHE I+ +K D +I R L Sbjct: 446 ETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKGHENYQILG-KQKIHFDDREIARLAL 504 >gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] Length = 487 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 33/504 (6%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +D+++ ++ + + + DSR ++ +FVAI G DGH F Sbjct: 1 MKLLKDILFGVGLTAVSGSTNLMVGT-------LCFDSRKVKLDDVFVAIKGTLTDGHKF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +AI GA IV + + + + VD+ K L++ AS Y + + Sbjct: 54 IEKAIDSGAVCIVCET------MPEQLVNGVTYVEVDSGNKALAIMASNYYDNPSKNLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++++S + Q+ +++G I + TTP + + + L Sbjct: 108 VGITGTNGKTTISSLLYQLFKKAGFKVGLISTIKIMVDDKEYATSHTTPDAMTINEHLDL 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +GV +E SSHG+ Q R +G+ FTNL DH+DYH+T Y + K LF++ Sbjct: 168 MNEEGVEFCFMEVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSLFDK 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD +++ Y + + +V Sbjct: 228 -LPKNAFALTNVDDKNGLVMLQNTAARKFTYALKSYADYRAQILENQFDGQLLKVD---- 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G F YN L +G++ L L +L V GRF++ + Sbjct: 283 --DDELWTKLIGHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDGRFQYY-ISKEKI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L+ I T+ +G I V GCGGDRD+ KRP+MG IA +++ I Sbjct: 340 TAIVDYAHTPDALKNVLETIGTLRTGNENVITVVGCGGDRDKSKRPVMGNIASQMSNKTI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E P I E+ G+ + NR +AI+TA ++ D+++VAGKGH Sbjct: 400 FTSDNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET TNG++ D II ++L Sbjct: 460 ETYQE-TNGKRIDFDDFKIITDVL 482 >gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] Length = 522 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 209/473 (44%), Gaps = 20/473 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + G FVAI G DGH FI A+ GA +V +L + Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V +TR L+ A+ L+G ++ VTGT+GK++VA V + + G ++ + Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 LTTP P+ L + L + +G T ++E SSH LDQ R+ G+ Sbjct: 179 STIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FT L DH+DYH T Y AK LF+ L ++ A+ DD ++ Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDA-LGPDATALYNTDDEAGPTMVADTEARVVS 297 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + + ++ F Y A G Sbjct: 298 FGLDRDADIEATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAAYGTGTALGHV---- 353 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-- 384 V + L VPGR E + G + +DYAHT ++LE +L+ +R T + Sbjct: 354 --PEAVADALADAPPVPGRVEPLRFED-GTTVIIDYAHTPDALENVLRTVRDTTPAKAAL 410 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441 VFGCGGDRD GKRP MG+IA LAD IVT DNPR+E P I +I G+ Sbjct: 411 WCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDIRDGVERPESMRW 470 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAI+ A + DV+V+AGKGHET + + D ++ R G Sbjct: 471 IVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTR-PFDDREVARRYFG 522 >gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] Length = 504 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 234/473 (49%), Gaps = 18/473 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ +S S+ I+ G ++ A+ G++ G F A+A GA A+ A + + Sbjct: 34 LEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRG-----P 88 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P LVVD R L ++R+YG+ ++ VTGT GK++ ++ Q++G+ + Sbjct: 89 AGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAA 148 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G T + + LTTP L + + + V ++E SSH L R+DG+ Sbjct: 149 VVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVF 208 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 F NLGRDH+D+H+ + Y+ AK LF + A++ DDA+ + + + A Sbjct: 209 DVAVFLNLGRDHLDFHRDLEDYYAAKASLFTP--ERARFALVNVDDAHGRRLAEEATVPV 266 Query: 265 CRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAG 320 Q V + + LPG+F V N L A Sbjct: 267 RTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIPAGCALPGDFNVANTLAAVA 326 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 G+D A+V + VPGR E V + VDYAH +++E ++ +R +T Sbjct: 327 AAAEAGLDPAVVAAGIAAAGGVPGRLERVDAGQ-DFLVVVDYAHKPDAVEAAIRTLRPLT 385 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 GR+IVV G GGDRD GKRPIM IA LAD+ +VTDDNPR+EDP IRA ++ G+ Sbjct: 386 EGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAGVVTGQ 445 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 IE G R AIR A+ D++++AGKGHET V +G D +++RE Sbjct: 446 AIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEV-DGVVHPFDDREVVRE 497 >gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas sp. SN2] Length = 530 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 147/513 (28%), Positives = 230/513 (44%), Gaps = 40/513 (7%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + +I ++ DSR + FVA+ G++ DG FIPQAI+ GA I+ + Sbjct: 14 LAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDD 73 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135 S +R ++ I+ + LS A+ Y ++ AVTGT+GK+S + Q Sbjct: 74 SQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQ 133 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVE 188 + G S +G + ++ + TTP+ I L L+ V H + E Sbjct: 134 LKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHTAFE 193 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSH L Q RL +K FTNL RDH+DYH T + Y AK L ++ + + Sbjct: 194 ASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLNVND 253 Query: 249 DDAYSK--------------------------EVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 ++ + Q + V Sbjct: 254 SESQNWADYLDANAAKDGSSEEIAISKPRVTRVWTGFEPTDDVLATHKQPQDRHCFATNV 313 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + + + L G F V N L A +A G V+ + L V Sbjct: 314 SYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVRVVNGLQPV 373 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR E + VDYAHT ++LE +LK+ +T T+G++ VFGCGGDRD+GKRP+M Sbjct: 374 PGRMEVFPVGGS-ASVIVDYAHTPDALEQVLKSAKTHTAGKVWCVFGCGGDRDKGKRPLM 432 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 G A AD+ ++T DN RSE PE I ++I G+ +E+ +R AIR ++ ++ Sbjct: 433 GAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRESAIRYCLDSADEN 492 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D+++VAGKGHE I+ + + ++ + Sbjct: 493 DIIIVAGKGHEDYQIIGTQQTDY-NERTVVARL 524 >gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] Length = 497 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 143/506 (28%), Positives = 227/506 (44%), Gaps = 26/506 (5%) Query: 1 MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +++ E + + + ++SDSR +Q G+ FV I G DGH + Sbjct: 1 MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60 Query: 60 IPQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 I Q I A IVV Y +D A ++ DNTR L+L ++ +YG + Sbjct: 61 IDQ-IKDKASVIVVLDGEYEAKDCKAA------VVSTDNTRLALALMSAAVYGNPDRKLF 113 Query: 119 AVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175 + T K + + G+ + IG TI A TTP I + ++ + Sbjct: 114 TIGITGTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFA 173 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G V +E SS GL R GI G FTNL DHI + + Sbjct: 174 KMVDAGCKAVVMEVSSQGLKLDRTAGIMFDIGVFTNLEPDHIGP---NEHESFEDYLNCK 230 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L K+ I D + + R +G + + +H ++ ++ Sbjct: 231 AKLFKQCKVGIVNADDKHTQDILRGAICKVESYGIGDNADI-KAENIELLHEPGKIGLTY 289 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + LPG+F VYN+L A + +D + E L+ + V GR E V + Sbjct: 290 DCTGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALKETLKHVKV-KGRIELVKVS 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + +DYAH + +LE IL ++ R++ +FGCGG+R + +R MG+++ LAD+ Sbjct: 349 D-DFTLMIDYAHNAMALESILTTLKEYHPHRLVCLFGCGGNRSKERRYEMGEVSGKLADL 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T DNPR E+PE I +I GI ++ +R EAI+ AIE D++V+AGKG Sbjct: 408 TIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPGDIIVLAGKG 467 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HE + G K + +I+E+L Sbjct: 468 HEDYQEIK-GVKYPMDERVLIKEVLE 492 >gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens] Length = 539 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 141/521 (27%), Positives = 238/521 (45%), Gaps = 41/521 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + +I + DSR + G +FV + G K DG+ F Sbjct: 8 MTLAELLDE-----ARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEFA 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QAI +GA AIV SS + +VV++T LS A YG +N ++ Sbjct: 63 HQAIEKGAVAIVSSSEVLPAEGLEAS------VVVEDTNILLSGLAGAFYGHPSKNLAVV 116 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + ++ I + GL + +G + + TTP ++L K ++ Sbjct: 117 GITGTNGKATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMAS 176 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G +E SSH + R + FTNL D D+H+++ Y A +LF + Sbjct: 177 MVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAK 236 Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ E I D V + + ++G + ++ +V + ++ + Sbjct: 237 MVNPEKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVR 296 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G VYN L A + IA+ ++ +E++ VPGR E + + Sbjct: 297 TPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI-DEEQ 355 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VD+A+T + L +L +R RII V G GDRD+ KRP+M KIA D +D+ I Sbjct: 356 AFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCI 415 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GN-----------------RIEAIRTA 452 T DNPRSEDP + +++ G+ +E+ + R A+R Sbjct: 416 FTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAG 475 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + M + D +V+AGKGH T I+ + K+ D + RE L Sbjct: 476 VAMGEEGDAVVIAGKGHNTYEIIGDN-KEYFDDREECREAL 515 >gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] Length = 474 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 163/474 (34%), Positives = 249/474 (52%), Gaps = 28/474 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + +S++S+ I+A F AI +G+ FI A+ +GA ++ + + Sbjct: 9 FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKNTTNK-- 62 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ V++ ++ L Y K P+ ++AVTGT+GKSSV S++ QI G + Sbjct: 63 -------VIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115 Query: 145 FQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG + LTT + K L+ G+ +++ EASSHGLDQ RL Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K+ FT+ +DH+DYH T++ Y AK++LF + L K+ AI+ +D K + Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + L VG G + K + Q + + K++DF P+ G FQ N L+A Sbjct: 236 LDKHKIKYLCVGANGNC-KITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 D + V+ L K+ V GR E V + I++DYAHT ++LE L ++ I Sbjct: 295 LSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350 Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G++ V+FGCGG+RD KR +MGKIA +AD IVTDDNPR EDP+ IR EII GI Sbjct: 351 KAKGGKLSVIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 +IE +R EAI+ I L K D+L++AGKGHE I+ + EK D ++ Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463 >gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. AS9601] gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. AS9601] Length = 511 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 134/503 (26%), Positives = 242/503 (48%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ + I P +++IN +S +S+ +Q G +F+ + G DG F +AI GA Sbjct: 5 KLHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ A + Q + R ++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGPA-AKQKIGSIDRKRILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244 +E SSH + Q+R+ G + A FTNL +DH+DYH ++YF K + F L ++ Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGI 242 Query: 245 IIYADDAYSK-----EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + ++ KR+ ++ + F + + + Sbjct: 243 CVLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + N + A + + + + ++ PGR E + + Sbjct: 303 KIQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA +L+D Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR+E+P+KI +I+ GI I + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella pealeana ATCC 700345] gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC 700345] Length = 488 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 151/497 (30%), Positives = 227/497 (45%), Gaps = 19/497 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++DL+ F + E++ DSR +QAG++FVAI G + DG FI Sbjct: 1 MLIRDLLAPWFHYSGAE-----------DFLEITLDSRAVQAGYLFVAIPGYQVDGRKFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-A 119 A +GA A +V + + + IL R+ +L A + Sbjct: 50 AAAFERGASAALVHTDSPEKHGTVVNDGGLQILFFQLNRQISALAAQAYPLSQSRPQIVG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+SV + Q+ + +G D+ TT PI L K L + Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQSKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQGVE 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G ++E SSHGL Q R++ + FTNL RDH+D+H T + Y AK RLF+ Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDFHHTMEEYGIAKKRLFQFAN 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + I + + A + G I+ K T+ Sbjct: 230 LRGGLINIDDV-VGREWLADLASDKLLGFSVKGDSTADIYTKDNHFHDGGVSCTLVWPTG 288 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PL G+F + N + A G +G D ++ KL V GR E T+ G + Sbjct: 289 EAQLNSPLLGDFNLSNLVAALGALYLLGEDMHTLVALAPKLEPVAGRMERF-TSKDGVTL 347 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT +++E LK +R G++ +FGCGGDRD+GKRP+M A AD +VT D Sbjct: 348 VVDYAHTPDAIEQALKALRVHCKGQLWCLFGCGGDRDKGKRPMMAASAEQFADRVMVTSD 407 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 N RSEDP I ++I+ G+ + + R AI+ + D++++AGKGHET V Sbjct: 408 NCRSEDPNAIISDILAGLQHPQQALSQVERQVAIKEIVAQAASGDMVLLAGKGHETYQEV 467 Query: 476 TNGEKKMSVDCDIIREI 492 NG+K + + I Sbjct: 468 -NGKKLNYDERAFAKAI 483 >gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] Length = 492 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 157/501 (31%), Positives = 230/501 (45%), Gaps = 25/501 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AIA GA + F+ N P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDDGK---FTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY ++ Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229 Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 AII DD Y E+ +K+ + I + A + + Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADICITDFTASSDGMEAVFQT 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G F N L A G VLE L K+ GR + NS Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L ++ I VFGCGG+RD+GKRP+MG A+ AD Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQSAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +VT DNPR E+P+ I +I+ +P +R AIR A+E D++++AGKGHE Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPEYVEADRAAAIRYAVERAATNDIILIAGKGHENY 468 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V G K D +I + L Sbjct: 469 QDVQ-GVKHHFSDFEIAEKAL 488 >gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oscillatoria sp. PCC 6506] gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oscillatoria sp. PCC 6506] Length = 516 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 161/518 (31%), Positives = 254/518 (49%), Gaps = 30/518 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + N + ++ ++++S Q G +F+ + G + DG F Sbjct: 1 MKLKELL----ATIPNISLSISHPALDSQVKGLATNSHACQPGDLFLGMPGTRVDGGDFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI----------------RSNTPILV-VDNTRKFLS 103 AIA GA A +VS+ + + P ++ V + + + Sbjct: 57 QGAIASGAIAALVSTQAAEKALEQGSGGAGERGSGGAGERGSEGEVPCIIPVVDMTQACA 116 Query: 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 A+ YG ++ VTGT+GK++ ++ + ++ L + G T Q+ Sbjct: 117 HIATAFYGYPGNQLKLVGVTGTNGKTTTTHLIEFLLSKAELPTALFGTLYTRWPGFQETA 176 Query: 162 L-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 + TTP + L K L+ G +E SSH L Q R+ G FTNL +DH+DYH Sbjct: 177 IHTTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYH 236 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + + YFNAK LF + AI+ ADDAY + ++ ++ S + Sbjct: 237 RDMEDYFNAKALLFSSN-YLKGRAIVNADDAYGRRIIDSLNSEQVWSYSTNDSKADLWAS 295 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + N + + + DF PL G++ + N L A G + +G++ + ++ +L + Sbjct: 296 DLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFP 355 Query: 341 VVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGR E V + + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KR Sbjct: 356 GVPGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 415 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEML 456 P MGKI +LAD+ +VT DNPR+EDPE+I +++ GI + G+R +AIRTAI Sbjct: 416 PKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQAIRTAILEA 475 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 D +++AGKGHE I+ EK D + R L Sbjct: 476 KPGDGVLIAGKGHEDYQILGT-EKIHFDDREQARLALN 512 >gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] Length = 489 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 154/507 (30%), Positives = 245/507 (48%), Gaps = 33/507 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+DL++ ++ + I + DSR A FVAI G + DGH F Sbjct: 1 MKQLKDLLFGVSLHAVSGSTAVG-------IESIRFDSRETGASDAFVAIRGTEADGHRF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I A+ G A++ + + + V +T+ L++ AS YG N+ Sbjct: 54 IDGAVKNGVRAVICE------ELPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V++ + Q+ +++G I + RLTTP + + K LS Sbjct: 108 VGVTGTNGKTTVSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSR 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ GV +E SSHG+ Q R +G+ G FTNL DH+DYH+ Y + K +LF+ Sbjct: 168 MNEAGVEFCFMEVSSHGIAQRRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDG 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ ADD +++ Y + + + Sbjct: 228 -LPKSAFALTNADDKNGLFMIQNTRARKLTYALRSYADFRAQILEQQLDGQLL------K 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +D + L G+F YN L +G+ +L+ L L V GRF+ + + Sbjct: 281 IQDNEVWTKLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDGRFQ-YFVSKQRI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L I + +G I V GCGG+RD+ KRP+MG IA D+++ AI Sbjct: 340 TAIVDYAHTPDALKNVLVTINALRTGNESVITVVGCGGERDKSKRPVMGHIASDMSETAI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR E P I AE+ G+ + +R +AIRTA +M D++++AGKGH Sbjct: 400 FTSDNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 ET + G ++ D ++ E+L + Sbjct: 460 ETYQEIA-GVRRDFDDYKLVSEVLERL 485 >gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter sp. 638] gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638] Length = 495 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ + R + E+ DSR +G +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVQNV-----------PARALREMVLDSRVAASGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 QAIAQG AI+ + D P++ + + LS A R Y + + ++ Sbjct: 54 QAIAQGVAAIIAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G + +G TT S + + LS L+ Sbjct: 114 VTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLA 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ Sbjct: 174 GQGATFAAMEVSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ V + + + Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+ + ++ +L V GR E T Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G+ R EA+ AI + DV+++AGKGHE Sbjct: 411 VTDDNPRTEEPRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV D +LG + Sbjct: 471 YQIVGAHRLDY-SDRVTAARLLGAL 494 >gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] Length = 511 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 167/521 (32%), Positives = 244/521 (46%), Gaps = 45/521 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL P +I + DSR +++G +F A+ G DGH +I Sbjct: 1 MRLEDLARVINPSEAGGSLAL-------EIEGLYCDSRQVRSGGLFFALRGVATDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + +GA A+VV + + L VD+ R +S A+ YG + ++ Sbjct: 54 VASRDRGAVAVVVED-------PSRVPEGMTWLKVDDARLAMSRAAAAFYGNPTDGIPVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ + R+G+ +G S TTP + L + + L Sbjct: 107 GITGTNGKTTTTYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDL 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 +G V +E SSH L+Q R+DG + G FTNL RDH+DYH+ ++YF +K RLF Sbjct: 167 VDRGAQGVVMEVSSHALEQRRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTEL 226 Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + A+I DD Y + A + + V + T Sbjct: 227 LAADDTKPRRAAVINVDDPYGARLASDAVAPVVSYGL--SPSVMVRAEMVTFSVDGISGT 284 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + F L G F +YN L A +A+G+ + +E VPGR E V N Sbjct: 285 LVTPLGTIPFHSRLLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERV-DN 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAHT ++LE +LK + I +GRII VFGCGGDRD+GKRP+MG+IA +D+ Sbjct: 344 DHGITVLVDYAHTGDALENVLKTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDL 403 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453 +IVT DNPR+ED I EI+ GI GF +R EAIR A Sbjct: 404 SIVTSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAA 463 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + DVL++AGKGHE I+ K D + + Sbjct: 464 RVARPGDVLLLAGKGHEDYQIIGT-MKHHFDDREEVAAAFR 503 >gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 153/506 (30%), Positives = 236/506 (46%), Gaps = 32/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DLI K ++++ L R R I+ + SDSR AG ++VA+ G DGH FI Sbjct: 3 MNLEDLIKKV--QILDILG-----DRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 ++A F I ++ + V+++ K L AS +G E + + Sbjct: 56 DA------AVAQGAAAVVCNAFPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+SV + + + + G S I + + TTP I L K L+ Sbjct: 110 GITGTNGKTSVTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEA 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSHG+ Q R + + FTN+ DH+DYH+T Y + F + Sbjct: 170 VEAGCEYAFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKT-KQSFFDG 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ AI DD K +++ + Sbjct: 229 LNPDAVAITNLDDKNGKIMLQNTKATRKSYALKTMADYHGKTTETDFNGMLLNFDGKEFW 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F + YN L+A + + G S VL+ + L V GRFE + + G Sbjct: 289 TTLTGRFNV------YNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLK-SDGGIF 341 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++L+ IL +I I + R+I VFGCGG+RDQ KRP MGKI+ + + I+ Sbjct: 342 FVIDYAHTPDALDNILDSINEIRTKNERLITVFGCGGERDQTKRPEMGKISTRKSTLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPRSE+P I EI G+ + +R +AI+ AI+ +D+++VAGKGHE Sbjct: 402 TSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496 + NG+K D + I E+ L+ Sbjct: 462 NYQEI-NGQKVHFDDKETIVELTRLM 486 >gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] Length = 520 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 156/493 (31%), Positives = 229/493 (46%), Gaps = 22/493 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + + ER I +++DSR + G +FVAI G DGH +I +A+ GA A++ Sbjct: 23 LDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICE 82 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 + S + V ++R+ L+ A Y E I + VTGT+GK++ A Sbjct: 83 A------LPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARL 136 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + G+ + IG + TTP L + G +E SS Sbjct: 137 IADMLNSCGIPAGYIGTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSS 196 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H L R+ G++ FTNL +H+D+HQT Y +AK LF++ L E A+ DD Sbjct: 197 HALVLDRVSGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQ-LDPEGFAVFNIDDP 255 Query: 252 YSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 Y+ ++ R ++ G+ V + Sbjct: 256 YASQMASRVAADKRFCCTLKPQRELTLRCGRSFSAAVSSRTLGSASVELHFPDAVHTVQT 315 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG + V N L AA + +GI V L K V GR E + + +VDYAH Sbjct: 316 ELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERIWDTEKSRCAFVDYAH 375 Query: 365 TSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++LE L + + S R++VVFGCGG+RD+ KRP MG+IA + AD +T DNPR Sbjct: 376 TPDALEKALSALGELKSSDARLVVVFGCGGNRDRLKRPEMGRIASEKADFVFLTSDNPRD 435 Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E+PE I EI G+ + R EAIR A L D+L+VAGKGHET + G K Sbjct: 436 ENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKGHETYQEIA-GIK 494 Query: 481 KMSVDCDIIREIL 493 D +I+RE L Sbjct: 495 HFFSDQEILRECL 507 >gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] Length = 522 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 211/473 (44%), Gaps = 20/473 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + G FVAI G DGH FI A+ GA +V +L + Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V +TR L+ A+ L+G + ++ VTGT+GK++VA V + + G ++ + Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 LTTP P+ L + L + +G T ++E SSH LDQ R+ G+ Sbjct: 179 STIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FT L DH+DYH T Y AK LF+ L ++ A+ ADD ++ Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDA-LGPDATALYNADDEAGPTMVADTEARVVS 297 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + + ++ F Y A G Sbjct: 298 FGLDRDADIEATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAAYGTGTALGHA---- 353 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-- 384 V + L VPGR E + G + VDYAHT ++LE +L+ +R T + Sbjct: 354 --PEAVADALADAPPVPGRVEPLRFGD-GTTVIVDYAHTPDALENVLRTVRDTTPAKAAL 410 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441 VFGCGGDRD GKRP MG+IA LAD IVT DNPR+E P I +I G+ Sbjct: 411 WCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDICDGVERPESMRW 470 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAI+ A + DV+V+AGKGHET + + D ++ R G Sbjct: 471 IVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTR-PFDDREVARRYFG 522 >gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] Length = 491 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 216/475 (45%), Gaps = 12/475 (2%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 R+ +++ + DSR ++ G FVAI G G F+ QA A GA A++ + Sbjct: 13 ARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAELPVP 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 + V R L A + +G ++ VTGT+GK+S + Q G Sbjct: 73 ADA-----IAVPGLRARLGSMADQFHGHPSRALRMVGVTGTNGKTSTVQLLAQALTLLGT 127 Query: 143 SSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S+ +G A TTP + L+ L +G ++E SSH LDQ R+D Sbjct: 128 STGTLGTLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGRVDA 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF + + + + Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQAAVVNLDDAFGRTLFASLDPA 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V S G G + + HN + ++ PL G F V N L AG Sbjct: 248 LRAIGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNLLAVAGA 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A+ A + + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 308 LHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALASLRSHAQ 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 368 DRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRGFARPDA 427 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 428 AIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAAVAAQAL 481 >gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] Length = 485 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 155/480 (32%), Positives = 235/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + I +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKY-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG D TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D I FTNL +DH+DYH T + YF AK +LF +L K I DD Y K Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDDYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIIDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter litoralis HTCC2594] gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis HTCC2594] Length = 495 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 179/498 (35%), Positives = 266/498 (53%), Gaps = 22/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L I + ++ + D R + G +F A G+ +G +I Sbjct: 1 MKL--------ARLAEAAGIAIEGGEDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+A + A ++ + D R+ +L A++ + P+ I+AV Sbjct: 53 SQAVA--------AGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + +G + IG T + LTTP + +S L+ Sbjct: 105 TGTNGKTSTVEMTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTHV+ EASSHGL Q+R +G+ + A +FTN RDH+DYH T YF AKMRLF+E++ Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVD 224 Query: 240 KESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+++ + ++ + ++RA R+ +VG QG+ I L+ Q++ I G+ Sbjct: 225 AGGTAVVWTGNSEWTAQAIERARQRELRLFTVGEQGEDIRLRARTPTQLGQELEIEHAGE 284 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL GE+QV NAL AAGL IA G D A V + + +L V GR E + G + Sbjct: 285 TRKLRLPLIGEYQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGRLERAVITATGAPV 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAHT ++LE L +R GR++ +FG GGDRD GKR MG++A +AD IVTDD Sbjct: 345 YVDYAHTPDALEAALAALRPHVEGRLLCIFGAGGDRDTGKRAPMGEVASRMADAVIVTDD 404 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NPR EDP IR +++ G E +R EAIR IE +D++++AGKGHET I+ + Sbjct: 405 NPRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKGHETGQIIGS 464 Query: 478 GE---KKMSVDCDIIREI 492 GE + D + RE Sbjct: 465 GENMRVEPFDDVQVAREC 482 >gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] Length = 490 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 234/501 (46%), Gaps = 28/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ + L + + +I VS+ S ++ G +F+ G K D H I Sbjct: 1 MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + +GA A+VV L + P + V ++R F + AS + +++L Sbjct: 56 PEVMEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTF 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T + + + G + I + + +TTP I + A+ Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKEN 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L Q R++G++ G FTN+ RDH+D+H T + Y AK+ LF+ L Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + ++ + L + Q + Sbjct: 227 KDDGVAVLNES-------LADAFNRKSRKITFGTSKNADYRLGNIEVNWEGTQFVLETPD 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 G+F YNA A +G D + LE V GRFE G G Sbjct: 280 GLLKVFTKAIGDFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGL 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LA++ I+T Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLANVVILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDPE+I ++I GI ++ +R EAI TA+ + N+ D +V+AG+GHE Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459 Query: 474 IVTNGEKKMSVDCDIIREILG 494 I+ +K D +++ EIL Sbjct: 460 IIDEEKKVPFKDREVVEEILR 480 >gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] Length = 502 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 141/507 (27%), Positives = 222/507 (43%), Gaps = 26/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ ++I K +I+ + + ++SDSR + AG FV I+G +GH +I Sbjct: 5 MKISNIIEKINASVISGSC-------DADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYI 57 Query: 61 PQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 I +GA IVVSS Y A I N ++ D+TR +L ++ +G E + Sbjct: 58 QDVIGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLF 117 Query: 119 AVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175 + T K + + G + IG TI + TTP + ++ + Sbjct: 118 TIGITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFA 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G V +E SS GL +R GI+ G FTN+ DHI + + Sbjct: 178 KMVEAGCEAVVMEVSSQGLMLNRTAGIQFNIGVFTNIEPDHIGP---NEHSSFEDYLSCK 234 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L ++ I D + + K + + T Sbjct: 235 AKLFRQCDIGIVNADDEHVDRILANATCRVEKYGFSETADIRAADKELLYEHGKLGTKYH 294 Query: 296 EGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR----FEFV 349 + D +PG F +YN+L A + +D + + L + V V Sbjct: 295 VSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVRVRGRIDIVDLAEV 354 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + R I VDYAH + +LE +LK ++ RI+ VFGCGG+RD+ +R MG+++ L Sbjct: 355 NASRRDFTIMVDYAHNAMALESLLKTLKEYNPKRIVTVFGCGGNRDRDRRFEMGEVSGRL 414 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +D I+T DNPR+E+PE I A+I+ GI +E +R EAI+ A++ DV+VVA Sbjct: 415 SDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDNAQPGDVIVVA 474 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKGHE + G K D ++I E Sbjct: 475 GKGHEDYQEIK-GVKHHMDDRELIIEA 500 >gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] Length = 496 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 141/498 (28%), Positives = 232/498 (46%), Gaps = 29/498 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + +++ E ++ + +DSR ++ G +FV I G DGH + Sbjct: 1 MRLDTLLERLEYKVVQGS-------AETEVTTLINDSRKVENGSVFVCISGAVSDGHKYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + +GA A+VV + ++ ++ V++TR L+L ++ +G E I+ Sbjct: 54 AEVAEKGAAAVVVEKDVE-------VPADVTVIKVEDTRYALALMSAAYFGYPAEKLKIV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ I + +G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SS GL HR GI G FTNLGRDHI + + + L Sbjct: 167 VKEGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGP---NEHKDFEDYKRCKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L K+ I D E + + + +++ V Sbjct: 224 LFKQCRLGIANVDDKYFEDVFSGATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG F VYN+L A +C + + L+ + L+K V GR E V + Sbjct: 284 GVMDFDVEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAKV-KGRIEMVKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +I GI ++E +R EAI+ AI DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDII 489 + G K + +I Sbjct: 462 YQEIK-GVKYPMDERVLI 478 >gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella piezotolerans WP3] gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans WP3] Length = 488 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 147/498 (29%), Positives = 222/498 (44%), Gaps = 21/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M ++DL+ F + ++ N+++ DSR ++AG +FVA+ G + DG + Sbjct: 1 MLIRDLLAPWFH------------YSGIEVFNDLTLDSRALKAGDLFVAVPGYQVDGRQY 48 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENIL 118 I A+ GA A++V + + + + I R+ L A I+ Sbjct: 49 IQAALDNGAAAVLVHTDSPEEHGNISTDDGLLISFFQLNRQVSVLAAQAYPLSSKRPKII 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV + Q+ Q + +G D+ TT I L K L Sbjct: 109 GVTGTNGKTSVTQLIAQLQQLQSKQTAVMGTLGNGLWGELVDSGNTTADAITLIKQLQNF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++E SSHGL Q R++ + FTNL RDH+DYH T +AY AK RLF Sbjct: 169 EKSHADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFTFS 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + G I+ K+ T+ Sbjct: 229 SLRAGLINCDDAI-GASWLAQATSTKTLGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPE 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G+F + N + A G +G D A ++ L V GR E T+ Sbjct: 288 GEAKLQSPLLGDFNLSNLVAALGALYLVGEDMAAIVRLASALTPVAGRMERFTTSG-NVT 346 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +++E L+ +R + +FGCGGDRD GKRP+M A AD +VT Sbjct: 347 LVVDYAHTPDAIEQALQALRVHCKSELWCLFGCGGDRDSGKRPMMASSAEQFADHVMVTS 406 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DN RSE+PE I A++ G + NR AIR + + D++++AGKGHET Sbjct: 407 DNARSENPEDIIADVFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKGHETYQE 466 Query: 475 VTNGEKKMSVDCDIIREI 492 V NGEK + + I Sbjct: 467 V-NGEKLNYDERAFTKAI 483 >gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter lovleyi SZ] gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ] Length = 506 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 171/524 (32%), Positives = 262/524 (50%), Gaps = 45/524 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+++ + + + ++ ++ DSR + AG +F A+ G+K DGH FI Sbjct: 1 MLLEQLLHEVPLQATHG-------NLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ +A + + ++ P L V N R+ ++L A+R +G ++ + Sbjct: 54 SQAVT-------AGAAAVVLEDASYAPEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ I +GL +G S + + TTP L L Sbjct: 107 GITGTNGKTTTSYLLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQL 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +E SSH L+Q R+DG G FTNL RDH+DYH T QAY +AK RLF EL Sbjct: 167 ADAGAQAFVMEVSSHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSEL 226 Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L + A+I ADD ++E ++ A R G + +++ + N Sbjct: 227 LRPDDRTPLRHAVINADDPAAEEFIRAAACPVIRYGL--APGSEVTVRETTSSVNGISAI 284 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + F L G F + N L AA +A+G+ +++ +E+ VPGR E V N Sbjct: 285 LVTPQGEQPFHSRLLGGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGRLERV-EN 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G VDYAHT ++LE +L ++ + RII VFGCGGDRD GKRPIMG+IA +D+ Sbjct: 344 RAGVTCLVDYAHTGDALENVLSTLKDLAGARIITVFGCGGDRDNGKRPIMGRIAAGYSDL 403 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453 A+VT DNPR+EDP +I +I GI GF+ NR EAIR A+ Sbjct: 404 AVVTSDNPRTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAV 463 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 + D+L++AGKGHE I+ K+ D + + Sbjct: 464 RLARPGDILLLAGKGHEDYQIIG-QTKQHFDDREEAANAFRERI 506 >gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E + DSR AG +FVA+VG++ DG +IP Sbjct: 4 NLRDLLAPWVPD-----------APSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIP 52 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 53 QAIAQGVAAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 112 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S G TT S + + L+ L Sbjct: 113 VTGTNGKTTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 172 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T + E SSHGL QHR+ +K A FTNL RDH+DYH + Y A L+ E Sbjct: 173 DQGATFCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSE-- 230 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFS 290 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 291 SSWGDGEIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVF-TAPG 349 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+ G IA + AD+A+ Sbjct: 350 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAV 409 Query: 415 VTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G R EA+ A+ + DV++VAGKGHE Sbjct: 410 VTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHED 469 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 470 YQIVGNQRLDY-SDRVTVARLLGVI 493 >gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] Length = 476 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 239/497 (48%), Gaps = 26/497 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +Q L ++ + E ++S +S+ I+ G IFVA++GN DGH +I Sbjct: 1 MSIQKLFKNVDYRVLTLV-------EEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P AI GA+ I+ + +++V N R L +S Y P+N L + Sbjct: 54 PSAIENGAKMIIAERD------DYPYPKDITVVLVKNLRDNLGYISSNFY-NFPQNKLKI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G + + + S+ I + + TTP + L K + + Sbjct: 107 IAVTGTNGKTTTTYILESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDK 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + +E SSH L Q R+ ++ + FTNL +DH+D+H+T + YF AK L Sbjct: 167 NVEYFLMEVSSHALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKA-SIINHLKP 225 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + II DD Y ++ + + + ++ + +V IS + K + Sbjct: 226 NARLIINKDDKYCNRLLNVSDSFSLKEVATINGEV------LEYTLKGMKVRISKDDKKY 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L GE+ + N L A +GID ++ ++ ++ + GRFE + N + + V Sbjct: 280 IFTTKLMGEYNLQNLLGAILSAYNLGIDLDEIINSIQNINSIAGRFEII-DNDKDVMVVV 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT++ LE ILK + + R++ +FG GGDRD+ KR M + A +D+ +T DNP Sbjct: 339 DYAHTADGLENILKTLSIMKKNRLVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNP 398 Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+EDPE I ++ G+ + + +R AI+ +I+ L K D+L++AGKGHE I+ Sbjct: 399 RTEDPEMILNDVEKGMNSSIPYFKICDREMAIKNSIQTLQKNDILLIAGKGHEDYQIIGR 458 Query: 478 GEKKMSVDCDIIREILG 494 EK D ++ ++ LG Sbjct: 459 -EKIHFDDREMAKKYLG 474 >gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] Length = 485 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 239/471 (50%), Gaps = 21/471 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 18 NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++D R L AS Y + P+ L + G +G + S I + G + Sbjct: 73 --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129 Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G I + TTP + L K + + +V +E SSH L+ R+D + Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH T + YF AK +LF + L + ++ DD Y K + Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDINNSVFNIDDKYGKRLYDEFIEDN 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++S G G + + + + + I + K F L G+F +YN L A + Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARK 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383 +GI +LE + + PGRFE + + ++ VDYAHT ++L ++ R I +G R Sbjct: 305 MGISWEDILERVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 II +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++ G ++ Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTKTDDYL 423 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 505 Score = 299 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 143/500 (28%), Positives = 226/500 (45%), Gaps = 29/500 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L + + + + +I + S S + G +F+ + G DGH ++ Sbjct: 5 KLSQLTQDLLVKRM-------IGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVN 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 +AI +G A++ + S P +VV +TR+ +++ A YG N++ Sbjct: 58 EAIQRGCAALMAEKKVERLEGS------IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ I +G + IG S S+ + TTP + L L ++ Sbjct: 112 VTGTNGKTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMA 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + +E SSH L R+ G FTNL DH+DYH + Y K LF +L Sbjct: 172 DREAKYAVLEVSSHALRMGRVRGCNFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLG 231 Query: 239 PKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD +SK++ + Q + ++ + Sbjct: 232 NSYGSLPKVAILNADDPFSKKLAAKTSAQVIHYGI--DQPSDVRASEIRMNQESTSFWLD 289 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + G F VYNAL A + + GI + + LE V GRF+ + Sbjct: 290 TYLGSTWIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQ-AIETGQ 348 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 ++ VDYAH + LE ++ R IT G+II + GC GDRD+ KRPIM A LAD AI Sbjct: 349 DFQVIVDYAHNPDGLEKVISTARAITKGKIIALIGCEGDRDKAKRPIMAAKAAILADKAI 408 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPRSE E I +++ G+ +R +AI A+E+ D +++ GKGH Sbjct: 409 LTSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCVLILGKGH 468 Query: 470 ETVHIVTNGEKKMSVDCDII 489 ET I + + D +I Sbjct: 469 ETQQIFKD-HQIPFDDAEIA 487 >gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 515 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 137/510 (26%), Positives = 232/510 (45%), Gaps = 22/510 (4%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 Q + + L+ F ++ + + + DSR + F+A+ G+ DG FIPQA Sbjct: 5 QHIQLNTTQSIQPLLAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQA 64 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 ++ GA+ I+ + ++R + I+ + LS A+ Y I+ VT Sbjct: 65 VSLGAKVIIAECDTQQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVT 124 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKAL 174 GT+GK+S Q+ + IG + + + TTP I + K + Sbjct: 125 GTNGKTSTVQLTSQLAALLNKRAASIGTLGSGVISCTGECASFGETINTTPDAITMHKLM 184 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + V V++E SSH L Q R+ +K+ TNL RDH+DYH T QAY A R Sbjct: 185 AQFAQDNVKQVALEVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQA-KREI 243 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHN 287 + + + + + + + V + G K K+V Sbjct: 244 LTQPELKFAVLNGNEIESKQWLAQLPNTVTPVVYGIDDESLLLGNAQKVCLAKEVEYSSQ 303 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + T+ + + L G F ++NAL A + +G + + ++L V GR E Sbjct: 304 GCRFTLVSSWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRME 363 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + VDYAHT ++L+ L +R + GR+ V+FGCGGDRD+GKR +MG+ A Sbjct: 364 RFSDEKSPT-VVVDYAHTPDALKQALLALRQHSEGRLFVIFGCGGDRDKGKRSLMGEAAE 422 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 AD+ ++T+DN RSEDP I ++I+ G + +R AI A+ +D+++V Sbjct: 423 TCADVVMITNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATPKDIILV 482 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AGKGHE I+ + + + ++++ Sbjct: 483 AGKGHEDYQIIGSETVAY-NEREYVKQMFE 511 >gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] Length = 492 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 152/499 (30%), Positives = 226/499 (45%), Gaps = 21/499 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AIA GA + F+ P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDDGK---FAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLFYWHG 231 Query: 239 PKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + A +K+ + I + A + + Sbjct: 232 LQHAIINVDDGYGAELAGRLKKDCLDLAVYSYGFSEHADIRITNFTASSDGMEAVFQTPW 291 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F N L A G VL L K+ GR + NS Sbjct: 292 GEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLAVLAKIRPASGRMD-CIMNSGKPL 350 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ AD +V Sbjct: 351 VVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVV 410 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 T DNPR E+P+ I +I+ +P +R AIR A+E D++++AGKGHE Sbjct: 411 TSDNPRLENPQDIINDILPAVPNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENYQD 470 Query: 475 VTNGEKKMSVDCDIIREIL 493 V G K D + + L Sbjct: 471 VQ-GVKHHFSDFETAEKAL 488 >gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] Length = 503 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 143/487 (29%), Positives = 230/487 (47%), Gaps = 29/487 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +N + +DSR +++G +F+A G K DG FI QAI QGA A++ +F Sbjct: 14 VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWD----AHNFVWDKA 69 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + + + R A +YG+ + ++ VTGT+GK+S ++ Q +G Sbjct: 70 WTVPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCA 129 Query: 146 QIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + TTP I + L+ + G ++E SSH L Q R++G++ Sbjct: 130 LIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRVNGVRF 189 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TNL RDH+DYH ++Y A + + A+I DDA+ E+ + + Sbjct: 190 DVALLTNLSRDHLDYHGDMESY--AATKRRLFDWQSLNYAVINLDDAFGAELALQLVDKT 247 Query: 265 CRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V+ G + ++ + + +V + + G F V Sbjct: 248 VEVIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRSSWGAAQLSTQMVGRFNVS 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A G+ + + + L + V GR + +G N + + VDYAHT ++LE +L Sbjct: 308 NLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQPL-VIVDYAHTPDALEKVL 366 Query: 374 KNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + G ++I VFGCGGDRD+GKR +MG++A AD IVT DNPRSED ++I Sbjct: 367 LALCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMGRVAEKFADRCIVTSDNPRSEDAQQI 426 Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 E+I G+ +R +AI AI M + D++++AGKGHE + G K D Sbjct: 427 IGEVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIAGKGHEDYQEIK-GVKHPFSDV 485 Query: 487 DIIREIL 493 ++ + L Sbjct: 486 NVATQAL 492 >gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 511 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 246/503 (48%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L++ + I P + +++IN +S +S+ +Q G +F+ + G DG + +AI GA Sbjct: 5 KLHRLLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + Q + R ++ DN S + + + + VTGT+GK Sbjct: 65 EAAIIGSA-AKQKIGSIDRERILVIE-DNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH + Q+R+ G + A FTNL +DH+DYH ++YF K +LF K+ I Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGI 242 Query: 246 IYADDAYSK------EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298 + ++ KR+ ++ ++ F ++ + + Sbjct: 243 SVLNHDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + ++ PGR E + ++ Sbjct: 303 KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +DYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + +D Sbjct: 363 SLPIVIIDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDRSKRPLMGSIAEEFSDHV 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P++I +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIKFANKEDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I +++L Sbjct: 483 DYQILND-KVINFDDRKIAQKLL 504 >gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 492 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLQHAVINVDDEYGAELVGRLKKDCPDLVV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D ++ + L Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488 >gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9301] gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9301] Length = 511 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 240/503 (47%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+N + I P + +++IN +S +S+ +Q G +F+ + G DG F +AI GA Sbjct: 5 KLFKLLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + + + R ++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGSA-AKEKIGSFDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++SG + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243 +E SSH + Q R+ G + FTNL +DH+DYH ++YF K L+ K+ Sbjct: 183 ILEVSSHSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGI 242 Query: 244 AIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +++ DD + ++ S F + N + Sbjct: 243 SVLNHDDPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + + PGR E + ++ Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVAR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD GKRP+MG IA + +D Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] Length = 496 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 161/513 (31%), Positives = 237/513 (46%), Gaps = 36/513 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +I + +I V+ DSR + G +F A+ G + DGH F Sbjct: 1 MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A +GA A+V + + + F A RL + AV Sbjct: 53 AEAARRGAVAVVAERPVECAPARLLLAPSARRAMALAAASFHGRPAERL------RMAAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V V+ + + + +G S A + TTP + L+ + + Sbjct: 107 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVA 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +E SSH L Q R+ GI+ A FTNL RDH+DYH+ AYF AK RLF E L Sbjct: 167 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLA 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I A D + + + G + +V T Sbjct: 227 PGGTAVINARDPWGARLADQLGPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G+ + N L AAGL + +G+ V+ L H PGR E + RG ++ Sbjct: 287 LAIRSPLVGQHNLENLLCAAGLALGLGLPPDAVVRGLAASHGAPGRLER--IDGRGLSVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L ++ +R ++ R+I VFGCGGDRD+GKRP+MG A AD+AIVT DN Sbjct: 345 VDYAHTDDALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 403 Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462 PR+EDP I A+++ G+ ++ + +R AI A+E + D + Sbjct: 404 PRTEDPLAIIADVLPGLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAV 463 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +VAGKGHE V EK+ D D R+ LG+ Sbjct: 464 LVAGKGHEDYQQVGA-EKRPFSDRDEARKALGI 495 >gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] Length = 499 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 142/502 (28%), Positives = 222/502 (44%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++L+ +I + +I E+ +DSR + +F IVG DGH ++ Sbjct: 1 MKARELLKGLQYSVI-------CGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 I +GA +VV I+ VD+TR + + +S YG + + Sbjct: 54 KNVIDKGAVCLVVQKDVE-------PVPGVLIVKVDSTRYAMGIVSSNFYGNPSSKLTVI 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G + IG + TTP + + K L + Sbjct: 107 GITGTKGKTTTTYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+ V +E SS GL R+ G+ G F+NL RDHI + F +L Sbjct: 167 VDNGLDSVVMEVSSQGLMLDRVAGVDFDYGIFSNLSRDHIG--PNEHKTFEEYAMWKSKL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 I ADD + + + A G + + + + G Sbjct: 225 FTMCKIGIFNADDPHVDTMTEHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSG 284 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K D D L LPG F +YN+L A + +G+ + E L+ + V GR E + + Sbjct: 285 KLDGDVLVNLPGNFSIYNSLAAIAVADLMGVPFDKIQEILKTIKV-KGRVELIPISD-KF 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH + SL IL+ +R R++ +FGCGG+R + +R MG+++ ++AD+ I+T Sbjct: 343 TIMIDYAHNAVSLMSILETLREYKPKRLVSLFGCGGNRSKERRYEMGEVSGNMADLTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I GI ++E +R EAIR AI DV+V+AGKGHE Sbjct: 403 SDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + G K + D+IRE+L Sbjct: 463 QEIK-GVKHHMDERDLIREVLE 483 >gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] Length = 484 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 161/492 (32%), Positives = 243/492 (49%), Gaps = 21/492 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L K ELI+ P + I++++ DSR + G +FVA+ G + DG FI A+ Sbjct: 3 LAVKSLAELID----VPAELGSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFIDDALR 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 +A L + + + ++ V R A R +G + +AVTGT Sbjct: 59 -------AGAAAVLAEADGLAQQHPKVIAVPALRSRCGDIARRGFGDVSARMALVAVTGT 111 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+S+A Q+ + G+ + IG + ++ A TTP L + L+ ++ + Sbjct: 112 NGKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVNTTPDVFTLHRTLAAWHAEDI 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 HV +EASSH L Q RL G+ L G FTNL RDH+DYH+ ++AY AK+RLF + Sbjct: 172 DHVVLEASSHALSQERLAGLTLRTGIFTNLSRDHLDYHEDERAYLAAKLRLFSD--YPLQ 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI ADD + EV A + + +V +T+ Sbjct: 230 YAIYNADDPMASEVRTVASCPTLGISMSSAEADVFAQFEVLQSGL--NITLHAPYGTASA 287 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G F +N + A +G D V+ L L VPGR + V + + + VDY Sbjct: 288 ETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGRMQRVA-SPQELAVVVDY 346 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT +L + ++ +R +G + +VFGCGGDRD+GKR MG+IA LAD +VT DNPRS Sbjct: 347 AHTPEALAVAIEALRPGCTGELWLVFGCGGDRDRGKRAQMGRIAATLADRVVVTSDNPRS 406 Query: 423 EDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E PE+I +I+ GI G + +R AI A+ DV+++AGKGHE + G ++ Sbjct: 407 EAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKGHEDYQE-SAGVRR 465 Query: 482 MSVDCDIIREIL 493 D + +E Sbjct: 466 PFSDSAVAQEFF 477 >gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 485 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 150/480 (31%), Positives = 236/480 (49%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IF+A G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKK 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N ++V++ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLVEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF + L + ++I DD Y K Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHITMENYFQAKRKLFLK-LKDINNSVINIDDKYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + I + + F L G+F +YN Sbjct: 240 LYDEFIIDNPEIISYGIDGGDLEGD----YLDDGYIDIKYKNQIEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIVLKIGISMEEILKRVSTIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I ++ Sbjct: 355 ARNIKNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ AI + K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINIAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] Length = 505 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 229/476 (48%), Gaps = 19/476 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + + SDSR Q G +F + G KE ++P+AI +GA+AI+ Sbjct: 30 ADVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPL-------- 81 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 P +V + RK +L S L G+ + VTGT+GK++V+ ++ I Q SG Sbjct: 82 TGLQVPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRR 141 Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G S ++ LTTP L++ L+ + + TH +E SSH LDQ+RL GI Sbjct: 142 TGLSGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRLAGI 201 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 L G TN+ +DH DYHQ Y K R+ +++ P+ + + + DD + + Sbjct: 202 DLSVGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNW-DDPTCRSFAAEVKS 260 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + + + + + I G L G + N L AA C Sbjct: 261 SQTLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAAC 320 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++G+ + + +E+L VPGR E V + +DYAHT ++L ++++ + + S Sbjct: 321 LSLGVSLSEIALGIERLVTVPGRMERVTCGQS-FTVLIDYAHTDDALSHVIRSAKRLCSQ 379 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R+ VFG GGDRD GKR ++G A + AD I+T DNPRSEDP +I + G Sbjct: 380 RVFCVFGAGGDRDTGKRSLLGMAASE-ADRVIITSDNPRSEDPAQIIRAVAEGCLNKGVS 438 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R EAI A+ + D++++AGKGHE I+ + + D ++ Sbjct: 439 PEQIIDRREAIHYALSEARRGDLVLIAGKGHENNQIIGD-QIIPFSDRLVVENYFR 493 >gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] Length = 474 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 162/474 (34%), Positives = 249/474 (52%), Gaps = 28/474 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + +S++S+ I+A F AI +G+ FI A+ +GA ++ + + Sbjct: 9 FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKNTTNK-- 62 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ V++ ++ L Y K P+ ++AVTGT+GKSSV S++ QI G + Sbjct: 63 -------VIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115 Query: 145 FQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG + LTT + K L+ G+ +++ EASSHGLDQ RL Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K+ FT+ +DH+DYH T++ Y AK++LF + L K+ AI+ +D K + Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + L VG G + K + Q + + K++DF P+ G FQ N L+A Sbjct: 236 LDKHKIKYLCVGANGNC-KITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 D + V+ L K+ V GR E V + I++DYAHT ++LE L ++ I Sbjct: 295 PSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350 Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G++ ++FGCGG+RD KR +MGKIA +AD IVTDDNPR EDP+ IR EII GI Sbjct: 351 KAKGGKLSIIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 +IE +R EAI+ I L K D+L++AGKGHE I+ + EK D ++ Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463 >gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcus flavefaciens FD-1] Length = 479 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 149/503 (29%), Positives = 236/503 (46%), Gaps = 33/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + + +I ++ D+R + G +FV + G DGH Sbjct: 1 MKLYDLLENN----------AETKLGNIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAA 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + + +GA A+V L D ++ DN+R+ + S +G + ++ Sbjct: 51 AEMLEKGAAAVVCEHDLGLGDR---------QILTDNSRRLYGMMCSAWFGHPEKKLHMI 101 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++ + ++ I ++G + +G + I TTP L L + Sbjct: 102 GVTGTNGKTTITNVIKHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRM 161 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SS GL Q+R+ FTNL +DH+DYH+ + Y+ AK LF+ Sbjct: 162 VKAGCEYVVMEVSSFGLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKMLFDIC 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD Y K + G K+ + + G Sbjct: 222 DC----ALVNIDDEYGKRLYGEIGCEKQSFSVKGCADYTADGIKIKSTGS--SFWFCKGG 275 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K +PG F V N A +C+ G+ ++ +E+ + V GR E + T Sbjct: 276 KSHLVKCRMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKGRCEVIPTGR-DFT 334 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + DYAHT ++LE IL+++R T R+I +FGCGG+RD KRP M A AD IVT Sbjct: 335 VICDYAHTPDALENILRSVREYTDNRLICLFGCGGNRDAAKRPKMAAAAAKFADRLIVTS 394 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPE I EI+ G+ + +R EAI A+++ K D++V+AGKGHE Sbjct: 395 DNPRNEDPELIIKEILTGLEDSDIPYDVVVDRREAIYHALKIAEKGDIIVLAGKGHEDYQ 454 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ E + +I+ E L L+ Sbjct: 455 ILAGMEHIHFDEREIVAEGLKLL 477 >gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] Length = 485 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 236/480 (49%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF +L + I DD Y K Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKIKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + R+I +FGCGGDRD+ KRPIM K+A DL+DI I+T DNPR+E PE+I ++ Sbjct: 355 ARNIKNVNRVITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ A+ M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKVAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] Length = 505 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 245/523 (46%), Gaps = 48/523 (9%) Query: 1 MKLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL L+ PEL +I + DSR + G +F A+ G K DG F Sbjct: 1 MKLAQLLNCLASPELSGDAG--------IEIESLCYDSRKVAPGALFFALRGVKSDGTEF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + A+ GA AIV + ++VV + R +SL A+ YG + Sbjct: 53 VEAAVKGGAVAIVADRPCACP--------GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ V+ I +++G+ + +G S TTP + L L Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRE 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L G +E SSH L+QHR+DG F+NL RDH+DYH ++YF +K+RLF + Sbjct: 165 LVDHGARGAVMEVSSHALEQHRVDGCLFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTD 224 Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL A++ DD + + ++A G + + + + Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKAAAPVLTYSMTGKADI--SVAEAEFSVDGIRC 282 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ + L G F +YN L A G +A+G + +E VPGR E V Sbjct: 283 RLNTPVGEISLASELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-E 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G + VDYAHT ++LE +L + + + RII +FGCGGDRD+GKRP+MG+IA +D Sbjct: 342 TEEGITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSD 401 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452 +A++T DNPR+EDP+ I ++ GI GF +R AIR A Sbjct: 402 LAVITSDNPRTEDPQAILEDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRAA 461 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + + D++++AGKGHE IV EK D + L L Sbjct: 462 LLAAHPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503 >gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 492 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 141/497 (28%), Positives = 227/497 (45%), Gaps = 22/497 (4%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +DL D + I ++ ++ + V++DSR + G +FVAI G DGH + QA Sbjct: 5 KDLNLTDLVKTIQLINQPNLEG--IVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A+V ++ + P L+V ++ + + L AS Y E + T Sbjct: 63 VERGAVAVVSER---------SLDLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGIT 113 Query: 124 SGKSSVASFVQQICQRS--GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 + G S+ IG I+ ++ TTP L + L+ + + Sbjct: 114 GTNGKTTTTTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDE 173 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELL 238 GVT V +E SSHGL+ R+ G FTNL DH+D+H T + Y AK + + Sbjct: 174 GVTDVMMEVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQM 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + + A + Q + + ++ T++ +G Sbjct: 234 ASRGKVAVLNADDAQTPLYETMTGAKVITYGIDAQADLM-ATDIEQTLSQTSFTLNYQGA 292 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 G F VYN L+A G +A G + + LE +H GR + + + G + Sbjct: 293 KLPVTVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQRL--DVPGYNV 350 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y DYAHT + +E LK++ + +II + G GG+RD KRP MG++A A I+T D Sbjct: 351 YADYAHTPDGIEQCLKSLVGVPKEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITTD 410 Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 +PR E E I I G+ F+E G+R EA+R A + +++V+AGKGHE I+ Sbjct: 411 DPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKGHEKYQIIG 470 Query: 477 NGEKKMSVDCDIIREIL 493 N EK + I+R + Sbjct: 471 N-EKLPLDEEAIVRATI 486 >gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 511 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 136/503 (27%), Positives = 237/503 (47%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG F +AI GA Sbjct: 5 KLHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + + ++ R ++ DN + + + I + VTGT+GK Sbjct: 65 EAAIIGSA-AKERIASIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244 +E SSH + Q R+ G + A FTN +DH+DYH ++YF K + F L ++ Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGI 242 Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + + S F + + + Sbjct: 243 CVLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + ++ PGR E + + Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA +L+D Sbjct: 363 SLPTIIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase [Acinetobacter baumannii ATCC 17978] gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2] gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii TCDC-AB0715] gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] Length = 499 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 236/490 (48%), Gaps = 34/490 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ + S DSR ++ G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DDA Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238 Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ++ ++K A N + S+ ++ + + + F PL Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N + A G D ++ + KL PGR + + + R VDYAHT + Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+ Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A++ GI E +R EAI+ E D++V+AGKGHE + NG + Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475 Query: 484 VDCDIIREIL 493 D +R + Sbjct: 476 DDVVEVRSAI 485 >gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] Length = 511 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 132/503 (26%), Positives = 236/503 (46%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG + +AI GA Sbjct: 5 KLHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + + + R ++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGSA-AKEKIGSIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244 +E SSH + Q+R+ G + A FTNL +DH+DYH ++YF K + F L ++ Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGI 242 Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + + S F + + Sbjct: 243 CVLNHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPRE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + ++ PGR E + ++ Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + +D Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEEFSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P+KI +I+ GI + +R +AI +I+ K+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 508 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 133/503 (26%), Positives = 221/503 (43%), Gaps = 28/503 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + + + I + + +S+D+R ++ G IFVA+ G DG FIP AI +GA Sbjct: 8 NKLVKALPKAHIVGNYSDDTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGA 67 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN------ILAVTG 122 +A+VV S P+++VDN R S A+ + Sbjct: 68 KAVVVE-------GSYQPDLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGK 120 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 T+ ++S ++ +G + + +++ TTP P L + L + GV Sbjct: 121 TTTTYMISSMLESADASTGFITTVDYKIANHQWKHEEHS-TTPQPDRLHELLYRMLQAGV 179 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELL 238 + +E+SSHGL HRL+ + FTN+ +H++ H T + Y K RLF+ Sbjct: 180 EYAVIESSSHGLKLHRLEDVAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPD 239 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + ++ + S + + + + +G Sbjct: 240 KGCGKWGVINLDDPNAQLYIDSTKGKVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGN 299 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ VYNAL A G+ I I + LE+ VPGR + + + Sbjct: 300 STEINLPISGDYNVYNALAAIGVAITQNIPIDVCKSALERFTGVPGRMQVISMGQ-PFTV 358 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT +SLE +L ++ T GR+ VFG G+RD KR MGK+A AD I+T++ Sbjct: 359 VIDYAHTEDSLEKVLITLKQRTRGRLFAVFGSAGERDPYKRAPMGKVAAKYADFMILTNE 418 Query: 419 NPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +PR ED +I +I G +I +R AI A+ + D +++AGKGHE Sbjct: 419 DPRGEDEMQILLDIAEGARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLLAGKGHE 478 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T NG + +I ++ L Sbjct: 479 TTIETKNGFIPW-DEAEIAKQAL 500 >gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] Length = 492 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 156/501 (31%), Positives = 229/501 (45%), Gaps = 25/501 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AIA GA + F+ N P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDDGK---FTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDSLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGTLEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY ++ Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229 Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 AII DD Y E+ +K+ + I + A + + Sbjct: 230 HGLQHAIINVDDEYGAELAGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G F N L A G VLE L K+ GR + NS Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L ++ I + VFGCGG+RD GKRP+MG A+ AD Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +VT DNPR E+P+ I +I+ + +R AIR A+E D++++AGKGHE Sbjct: 409 VVTSDNPRLENPQDIINDILPAVSNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENY 468 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V G K D +I + L Sbjct: 469 QDVQ-GVKHHFSDFEIAEKAL 488 >gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 496 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 161/513 (31%), Positives = 236/513 (46%), Gaps = 36/513 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +I + +I V+ DSR + G +F A+ G + DGH F Sbjct: 1 MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A +GA A+V + + + F A RL + AV Sbjct: 53 AEAARRGAIAVVAERPVECAPARLLLAPSARRAMALAAASFHGRPAERL------RMAAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V V+ + + + +G S A + TTP + L+ + + Sbjct: 107 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVA 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +E SSH L Q R+ GI+ A FTNL RDH+DYH+ AYF AK RLF E L Sbjct: 167 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLA 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I A D + + + G + +V T Sbjct: 227 PGGTAVINARDPWGARLADQLGPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G+ + N L AAGL + +G+ V L H PGR E + RG ++ Sbjct: 287 IAIRSPLVGQHNLENLLCAAGLALGLGLPPEAVARGLAASHGAPGRLER--IDGRGLSVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L ++ +R ++ R+I VFGCGGDRD+GKRP+MG A AD+AIVT DN Sbjct: 345 VDYAHTDDALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 403 Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462 PR+EDP I A+++ G+ ++ + +R AI A+E + D + Sbjct: 404 PRTEDPLAIIADVLPGLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAV 463 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +VAGKGHE V EK+ D D R+ LG+ Sbjct: 464 LVAGKGHEDYQQVGA-EKRPFSDRDEARKALGI 495 >gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] Length = 492 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 152/494 (30%), Positives = 239/494 (48%), Gaps = 25/494 (5%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL++QL+ +Q + V+ DSR +Q G +F+A G+ DG +I A+A+GA A+ Sbjct: 5 RELLDQLAAMGIQP-----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALARGAVAV 59 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + S +N P V R A +YG E +++A+TGT+GK+++ Sbjct: 60 LWQPSADFSWDSTLATANLP---VAALRPLAGPLAHAVYGHPSEGLSLIAITGTNGKTTI 116 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + Q IG + TTP L + L+ ++ ++E Sbjct: 117 SQCIA---QAYPKPCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAACALE 173 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASS G+++ R++G ++ FTN RDH+DYH T +AY A+ + P+ AII Sbjct: 174 ASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAY--AEAKEKLFHWPRLRTAIINL 231 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + +M+ ++G + + + Q+ + + Sbjct: 232 DDEFGLNLMRETTAMRVLGYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGRVAVDT 291 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G + + N L A + G+ +A V L +L PGR E +G N + VDYAH Sbjct: 292 TLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEPL-VVVDYAH 350 Query: 365 TSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 T ++LE L +R + +GR+ VVFGCGGDRD+GKRP MG +A LAD +VT+DNPR Sbjct: 351 TPDALENALTALRDVATTRAGRLSVVFGCGGDRDKGKRPQMGALAERLADRVLVTNDNPR 410 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 SE P I EI G+ + +R AIR A+ QDV+++AGKGHE + + + Sbjct: 411 SEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKGHEPYQDMGS-VRL 469 Query: 482 MSVDCDIIREILGL 495 D + L L Sbjct: 470 PFSDVEQAGAALAL 483 >gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] Length = 494 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 167/494 (33%), Positives = 253/494 (51%), Gaps = 18/494 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL + + + ++ ++ S + AG F IVG DGH F AI GA Sbjct: 4 TCRELFEGIDCTFLGNADEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHGAR 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 IV L D ++ ++V +TR+ ++ A+ YG +++ +TGT+GK+ Sbjct: 64 VIVAQRKVYLAD-----ATDVVEIIVSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + V+ I + +G ++ IG + + TTP + L + + G V+ Sbjct: 119 TTTYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVA 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LD R G +F+NL +DH+DYH+T +AYF AK LF P Sbjct: 179 MEVSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARRVI-- 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD + +E+++R AG R+LSVG+ IH V V + V G+++ +P Sbjct: 237 CIDDKWGQELLRRCAAAGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYP 296 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIYVDYAH 364 L G F V N ++A G+ + +GI +VL L + VPGR + + G ++VDYAH Sbjct: 297 LVGRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAH 356 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L + + +T GR+IVVFGCGGDRD KRP+MG+ AL D A+VT DNPRSED Sbjct: 357 TPDALRKAISAVANLTDGRVIVVFGCGGDRDATKRPLMGQAALS-GDFAVVTSDNPRSED 415 Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P+ I ++I+ G+ F +R EAI AI + N D ++VAGKGHE I+ E Sbjct: 416 PDAIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKGHEDYQILAT-ET 474 Query: 481 KMSVDCDIIREILG 494 D ++ E L Sbjct: 475 IHFSDAEVAGEELE 488 >gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] Length = 491 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 219/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR ++ G FVAI G G F+ QA A GA A++ Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ + ++ VTGT+GK+S + Q G + Sbjct: 75 A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALR 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN ++++G+ PL G F V N L AG Sbjct: 250 AIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAVAGALW 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE + G + D + + L Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDDALVAAQAL 481 >gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] Length = 480 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 157/482 (32%), Positives = 250/482 (51%), Gaps = 23/482 (4%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +++ K+ +S +S+ ++ +F + G D + FI A+ Q ++ + S Sbjct: 4 NLKQLFKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 I+ V++ + L Y K P+N++AVTGT+GKSSV S++ Q Sbjct: 64 TIDK--------IIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSL 115 Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G + IG + LTT + K L+ + +++ EASSHGL Sbjct: 116 LGKKAASIGTIGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGL 175 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RL IK+ FT+ +DH+DYH T++ Y AK++LF E L + AI+ +D + Sbjct: 176 NQARLGEIKVNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIE 235 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + N + ++VG +G + K+ Q ++ + ++ F + G FQ N Sbjct: 236 FIKDYLLNHNIKFITVGKKGDV-QITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AA IG D ++E L ++ V GR E I+VDY+HT ++LE L Sbjct: 295 LLIAALSIHYIGCDFNKIVEILTQVKPVKGRMER----IDNTNIFVDYSHTPDALEKALT 350 Query: 375 NIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 ++ I ++IVVFGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEI Sbjct: 351 ELKNIKLRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEI 410 Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I I ++E NR EAI+ I L + D+L++AGKGHE I+ + +K D +I+ Sbjct: 411 ISCIEKADYMEIANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVG 469 Query: 491 EI 492 ++ Sbjct: 470 KL 471 >gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] Length = 485 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 156/471 (33%), Positives = 240/471 (50%), Gaps = 21/471 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 18 NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++D R L AS Y + P+ L + G +G + S I + G + Sbjct: 73 --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129 Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G I + TTP + L K + + +V +E SSH L+ R+D + Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH T + YF AK +LF + L + ++ DD Y K + Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDINNSVFNIDDKYGKRLYDEFIEDN 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++S G G + + + + + I +GK F L G+F +YN L A + I Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIK 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383 +GI +L+ + + PGRFE + + ++ VDYAHT ++L ++ R I +G R Sbjct: 305 MGISWEDILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 II +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I A++ G + Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIGFTKNDDYF 423 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 491 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 219/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR ++ G FVAI G G F+ QA A GA A++ Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ + ++ VTGT+GK+S + Q G + Sbjct: 75 A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALR 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN ++V+G+ PL G F V N L AG Sbjct: 250 AIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAVAGALW 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE + G + D + + L Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDDALVAAQAL 481 >gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] Length = 497 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 156/469 (33%), Positives = 234/469 (49%), Gaps = 13/469 (2%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V +DSR + G +F+A G DG FIP A+A GA ++ A F+ N Sbjct: 24 KRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPA---DGFNWNPAWNV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L V R + AS YG+ ++ +TGT+GK+S++ ++ Q + IG Sbjct: 81 PNLAVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + TTP P+ + + L+ QG V++E SSHGLDQ R++G+ Sbjct: 141 TVGNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + + Y +K RLF + AII ADDA+ +E+ + Sbjct: 201 VFTNLTRDHLDYHGSMEEYGASKARLFHWEGLRH--AIINADDAFGRELAAGIDRQRTQT 258 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G + + + + A + Q+T++ + + PL G F N L G+ Sbjct: 259 VTYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVNGV 318 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385 L ++ GR + +G + +DYAHT ++LE L + I R+ Sbjct: 319 ALKDAAAVLSRIQPARGRMQRLGGGHEPL-VVIDYAHTPDALEKALATLAEIRPAGNRLY 377 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGN 444 VFGCGGDRD+GKRP+MG IA +AD+A+VT DNPRSE+P+ I A+I G+ + + Sbjct: 378 CVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGETGHVEAD 437 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R AIR AI D+++VAGKGHE + G K+ D I E L Sbjct: 438 RAAAIRWAIAAARAGDIVLVAGKGHEEYQDI-RGVKQPFSDFRIAEEAL 485 >gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica ST-640] gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica 020-06] Length = 492 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF + + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + L G F N L A G Sbjct: 263 YGFSEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NR 445 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P +R Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D ++ + L Sbjct: 442 AAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488 >gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] Length = 492 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA I F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF + + I A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWQGLQHAVINIDDGYGAELVCRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + L G F N L A G Sbjct: 263 YGFSEHADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I Sbjct: 323 LDKVLDVLGKICPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGTALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKRP+MG A++ AD ++T DNPR E+P+ I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVEGADKVVITSDNPRLENPQDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I + L Sbjct: 442 AAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEIAEKAL 488 >gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] Length = 477 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 231/470 (49%), Gaps = 10/470 (2%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++ +S+ ++ G IF+AIVG + DG +I +AI A A++ SA ++S N Sbjct: 13 KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESA----NYSKNKAWNV 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++N + ++ A + + ++ VTGT+GK+SV ++QQ S+ IG Sbjct: 69 PSFGIENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIG 128 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + TTP I L + L+ +G+ + ++E SSH + Q+R+ I Sbjct: 129 TLGSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ RDH+DYH+T Y + F ++ + D + +M+ + Sbjct: 189 LTNVTRDHLDYHKTLANYQK-IKKQFFSDGECKNFILNIDDCIGQELLMEVDWSEKNLTT 247 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + K + + K ++ + G VYN L G + Sbjct: 248 YAIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFS 307 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387 +++ +E L +PGR E + + G V DYAHT ++L+ +L+++R I+ II++ Sbjct: 308 IDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDALKNVLQSLRAISDNEIILL 367 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446 FGCGG+RD+GKR M +A + AD IVT DNPR EDP +I +I I + +R Sbjct: 368 FGCGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHVVIESRE 427 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI+ AI M+ + +L++AGKGHE + G K D DI LG I Sbjct: 428 QAIKKAIGMMEENSILLIAGKGHEQHQEIK-GIKHPFSDKDIALLELGGI 476 >gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] Length = 497 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 153/500 (30%), Positives = 240/500 (48%), Gaps = 25/500 (5%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ ++I QL ++ +R +++++ DSR G +F+ I G DGH ++ +A A Sbjct: 2 ERNLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAA 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 QGA A + + D ++ V +T++ + A Y + + VTGT Sbjct: 62 QGAVAALTEQETEVPD-------GMTVIRVPSTQEAVKTLAPWFYDWPARKMRMIGVTGT 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ + ++ + R+G IG + + + + TTP + L K L + Sbjct: 115 NGKTTTTNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHC 174 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239 +E SSH L R+ GI+ TN+ +DH+D+H+T + Y AK E Sbjct: 175 DTCVMEVSSHALALDRVAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+ +DD S +M R + V A H + + + Sbjct: 235 PNKTAVFNSDDPSSAIIMPRVKTKIMTYGKGKDNDVYPLTFHVAASHMELN--LQTPVGE 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D + GEF VYN + + IA G+ ++ L+ VPGRF+ + + Sbjct: 293 MDLKLHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHAGQ-PFTVV 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE +LK R IT G++ VVFG GGDRD+ KRPIMGKIALDLADIA+VT DN Sbjct: 352 VDYAHTPDGLENVLKTARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVTSDN 411 Query: 420 PRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PRSEDPE I +I G+ + +R EAI + DV+++AGKGHE Sbjct: 412 PRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHENYQ 471 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ + D +++R+ Sbjct: 472 ILKD-RTIHFDDGEVVRDFF 490 >gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] Length = 485 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 234/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + I +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N ++++ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG D TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D I FTNL +DH+DYH T + YF AK +LF +L K I DD Y K Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDNYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 238/505 (47%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L++L+ P R + E++ DSR AG +FVA+ G++ DG +IP Sbjct: 5 NLRELLAPWVP-----------NAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119 QAIAQG A+V + ++ P++ + ++ LS A R Y + H + Sbjct: 54 QAIAQGVAAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTG 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT SPI + + L L Sbjct: 114 VTGTNGKTTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQ 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGL QHR+ + A FTNL RDH+DYH Y AK RLF EL Sbjct: 174 RQGATFAAMEVSSHGLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELD 233 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294 + ADDA + +++ A + QG ++ +V + Sbjct: 234 VGQRIIN--ADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFR 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L GEF V N L+A +A+G +L+ +L + GR E R Sbjct: 292 SSWGEGIVHCQLIGEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICGRMEVFHAEDR 351 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G++ VFGCGGDRD+GKRP+MG IA AD I Sbjct: 352 PT-VLVDYAHTPDALEKALTAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYADRVI 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +TDDNPR E + I +I G+ R EA+ +AI D+++VAGKGHE Sbjct: 411 ITDDNPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 I+ D + +LG++ Sbjct: 471 YQIIGKQRLDY-SDRTTVARLLGVM 494 >gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] Length = 493 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 193/497 (38%), Positives = 265/497 (53%), Gaps = 11/497 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DLI I +++DSR + GW+F A+ G K DG FI Sbjct: 1 MYLDDLIGAVPARAALGGHPGLGGHPGLAIAGLTADSRAVAPGWLFAALPGVKADGRAFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118 P A+ ++ L + + P +V N R+ + A+ G P ++ Sbjct: 61 P-------AALAAGASAVLAPEGTALPPDAPAALVTAANPRQAFARMAAAFAGAQPATVV 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK+S SF +QI R G ++ +G + + +TTP P+ L K L+ + Sbjct: 114 AVTGTNGKTSSVSFTRQIWDRLGRTAASLGTLGAESGVYRRAGSMTTPDPVSLHKMLAEM 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV +++EASSHGLDQ+RLDG++L A +FTNL RDH+DYH T AY AK RLF E+ Sbjct: 174 TEAGVDALAMEASSHGLDQYRLDGVRLSAAAFTNLTRDHLDYHHTMDAYLAAKARLFGEV 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L +E A++ ADD + + G VL G K + L V A + Q + + + G Sbjct: 234 LGREGVAVLNADDPAFPTLAALCRDRGQSVLDYGRSAKTLRLAGVSAKAHGQSLDLELFG 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L PL G+FQ N L A GL IA G + L L VPGR E V + G Sbjct: 294 RHHSVLLPLVGDFQAMNVLCALGLAIATGAPVDAAVATLASLEGVPGRLEMVARRASGAP 353 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +YVDYAHT + L L+ +R G+++ VFGCGGDRD+ KRP+MG+ + AD+AI+TD Sbjct: 354 VYVDYAHTPDGLVTALRALRPHCRGKLVCVFGCGGDRDRAKRPLMGRAVAEGADVAILTD 413 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSEDP IRAE G P IE R AIR + +L D+LV+AGKGHET + Sbjct: 414 DNPRSEDPAAIRAEARVGCPDAIEIDGRDAAIRAGVALLGPNDLLVIAGKGHETGQTIGT 473 Query: 478 GEKKMSVDCDIIREILG 494 VD D R +G Sbjct: 474 -VVHPFVDADHARAAVG 489 >gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D11] gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] Length = 485 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 234/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + I +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N ++++ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120 Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG D TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D I FTNL +DH+DYH T + YF AK +LF +L K I DD Y K Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDNYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 490 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 146/502 (29%), Positives = 233/502 (46%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E++ +E +I E+++DSR + G +FV I G DGH +I Sbjct: 1 MKLTALLERLQYEVVQGT-------KEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + +GA A++V + ++ V++TR L+L ++ +G E ++ Sbjct: 54 EEVGKKGAAAVIVEKDVEA-------PKHMTVIRVEDTRYALALASAAYFGYPAEQLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + G IG + I TTP + + + Sbjct: 107 GITGTKGKTTTTYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLG DHI + + + L Sbjct: 167 VDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L ++ I D + + R + + H + V Sbjct: 224 LFRQCKIGIANVDDPYFKDVFREATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG F VYN+L A +C + S + + L+ + V GR E V + Sbjct: 284 GLMDFDVEIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKALK-VAKVKGRIEMVKVSDE- 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSKTRRYEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I G+ ++E +R EAIR AI DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K + D+I +IL Sbjct: 462 YQEIK-GVKYAMDERDLIADIL 482 >gi|33598266|ref|NP_885909.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella parapertussis 12822] gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella parapertussis] Length = 945 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + Sbjct: 31 DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG Sbjct: 86 ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145 Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + Q LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ +H + + A + Q T+++ + + L G+ + N L+ AG +G Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379 + L + V GR + V +G + VDYAHT ++L L +R + Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383 Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ GI Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AI + DV+++AGKGHET + G K D R L Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 22/386 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV+ + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I + ++ Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ P+ L + + + + G + TN Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H ++ T +A A E +Y D + + A + Sbjct: 672 QREHQEFMHTVEAV--AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ ++V + Q + + P+PG + NAL A +A G Sbjct: 730 PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L V GR + + I Y +S + + + + R +V+ G Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416 GD +G A + A++T Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875 >gi|33603177|ref|NP_890737.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella bronchiseptica RB50] gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella bronchiseptica RB50] Length = 945 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + Sbjct: 31 DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG Sbjct: 86 ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145 Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + Q LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ +H + + A + Q T+++ + + L G+ + N L+ AG +G Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379 + L + V GR + V +G + VDYAHT ++L L +R + Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383 Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ GI Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AI + DV+++AGKGHET + G K D R L Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 22/386 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV+ + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I + ++ Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ P+ L + + + + G + TN Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H ++ T +A A E +Y D + + A + Sbjct: 672 QREHQEFMHTVEAV--AHENGAVISALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ ++V + Q + + P+PG + NAL A +A G Sbjct: 730 PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L V GR + + I Y +S + + + + R +V+ G Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416 GD +G A + A++T Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875 >gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] Length = 536 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 164/527 (31%), Positives = 243/527 (46%), Gaps = 53/527 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ ++ +I ++ DSR I +F A+ G DGH FI Sbjct: 24 MKLTQLLAALDSHDLHGDGA-------VEIKALTCDSRGIVPDSLFFALRGAAMDGHDFI 76 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P A+ + + + + + P + V + R ++ A+ +G + + Sbjct: 77 P-------AAVQAGAVAVVLEDESRAPAAIPWVRVRDGRSAMAWMAAEFHGNPTSRLPLI 129 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I + +G+ + +G S TTP L A + L Sbjct: 130 GITGTNGKTTTTYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQL 189 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ G +E SSH L+Q R+DG G F+NL RDH+DYH T ++Y AK+RLF EL Sbjct: 190 AAAGAKAFVMEVSSHALEQKRVDGCHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSEL 249 Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L A I DD V RA C V+ G + +++ + + Sbjct: 250 LKPTADKPLRRAAINMDDEQGATVAARA---ACPVIGYGICRGDVRAEELSLSVDGIRAR 306 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + D L G F + N L A IA+ + + +E VPGR E V N Sbjct: 307 LVTPKGSIDVSSRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERV-DN 365 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAHT ++LE +L ++ + GRII VFGCGGDRD GKRPIMG+IA ++D+ Sbjct: 366 RCGITLLVDYAHTGDALENVLTTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDL 425 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------------------------PGFIEKGNRI 446 AIVT DNPR+EDP I +I GI GF+ NR Sbjct: 426 AIVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRR 485 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI A+ + D++++AGKGHE I+ K D + R L Sbjct: 486 EAISLAVRLARPGDIVLLAGKGHEDYQIIGR-TKHHFDDREEARLAL 531 >gi|33593958|ref|NP_881602.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella pertussis Tohama I] gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella pertussis Tohama I] gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS] Length = 945 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + Sbjct: 31 DLRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG Sbjct: 86 ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145 Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + Q LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ +H + + A + Q T+++ + + L G+ + N L+ AG +G Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGW 323 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379 + L + V GR + V +G + VDYAHT ++L L +R + Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383 Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ GI Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AI + DV+++AGKGHET + G K D R L Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 136/386 (35%), Gaps = 22/386 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV+ + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I + ++ Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ P+ L + + + + G + TN Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H ++ T +A A E +Y D + + A + Sbjct: 672 QREHQEFMHTVEAV--AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ ++V + Q + P+PG + NAL A +A G Sbjct: 730 PGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L V GR + + I Y +S + + + + R +V+ G Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416 GD +G A + A++T Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875 >gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris DP4] gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio vulgaris DP4] Length = 486 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 234/470 (49%), Gaps = 15/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR + G +FVA+ G DG FI QA+AQGA +V + A + Sbjct: 22 IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFA----V 77 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V D+ R L YG P ++ VTGT+GK+++ ++ + +G +G Sbjct: 78 AVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTV 137 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S + LTTP + L + L ++ GV +E SSH LDQ R+ GI+ Sbjct: 138 SYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVL 197 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH + YFNAK RLF EL + ADD + + ++ A L+ Sbjct: 198 TNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGFALT 257 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGI 327 HL + V + + + + PL G N L + + +G+ Sbjct: 258 GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGL 317 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + LE VPGR E + TN RG ++VDYAHT ++L +L+ +R + RI+ V Sbjct: 318 SPADFVH-LENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVTV 375 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444 FGCGG+RD+ KRP+MG AD+A++T DNPR EDP I ++ + G + + + Sbjct: 376 FGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEAD 435 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AI A+EML D L+VAGKGHE V + K D IREILG Sbjct: 436 RRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484 >gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella kingae ATCC 23330] Length = 491 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 223/470 (47%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR IQ +F+A G DG +I AI +GA + + N PI Sbjct: 26 LHSDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPI 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ--RSGLSSFQIG 148 R+ + A+ +YG NI+ VTGT+GK+S+ ++ Q + + IG Sbjct: 86 ---AELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAIIG 142 Query: 149 PTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 Q+ TTP P+ + L G +H+++E SSHGL Q R++G+ Sbjct: 143 TVGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTA 202 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + + Y AK RLF + AII +DD + +++ + V Sbjct: 203 IFTNLTRDHLDYHNSMEEYGEAKARLFHWQGLQN--AIINSDDEFGAKLVAELKQSSLHV 260 Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S G+ I + + A ++ + + L G F N A G A G Sbjct: 261 YSYGFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRI 384 L+ L ++ GR + + VDYAHT ++LE L +R I ++ Sbjct: 321 YAFQAALKALAQIRAATGRMD-CIIRENKPLVVVDYAHTPDALEKALSTLREIQQPESQL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKG 443 VFGCGG+RD+GKRP+MG +A AD +VT DNPR EDP I A+I+ +P + + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALVQV 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI I QD++++AGKGHET V G K D +I + L Sbjct: 440 DRQTAIEQTIAQAAPQDIVLIAGKGHETYQDVQ-GVKHHFSDFEIAQLAL 488 >gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii AB900] Length = 499 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 147/488 (30%), Positives = 230/488 (47%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW + + S DSR ++ G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAQWPRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ K + + A Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAQA 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A ++L+ ++ + + + F PL G Sbjct: 241 DLMINSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G D ++ + KL PGR + + + R VDYAHT ++L Sbjct: 301 FNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ E D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 +R + Sbjct: 478 VVEVRSAI 485 >gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] Length = 485 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 233/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ + I P ++ ++ DSR+I G IF+A G + DG+ F Sbjct: 1 MNLKELLHNIDIDAKVYGKISP-----IEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFA 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ GA A+V S + ++ N + A++ Y ++ Sbjct: 56 SLAVENGAIAVVSS--------IYNPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ ++ + S IG I + + TTP L K L+ + Sbjct: 108 GITGTNGKTTVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +T +E SS GL RL ++ G TN+ DH+D+H + + Y AK++LF + Sbjct: 168 VKSNLTAAVIETSSIGLVLDRLANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQ- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L A++ D +K+ ++ + + +G Sbjct: 227 LSDSGLAVVNNDLPQAKQFLEATRAVPVTYGIEQLADY--RASNLRFSPFGADFDLIHKG 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F PL G++ VYN L A + D ++ + + GR E S Sbjct: 285 EIFPCHSPLIGQYNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLE--PIQSGPC 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ + + +RT+ G++IVVFGCGGDRD+ KR IM ++ A+ Sbjct: 343 PIYIDYAHTPDALDNVCQTLRTLLPSGGKLIVVFGCGGDRDRSKRKIMAQVVEKYG-FAV 401 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR EDPE I EI G F + +R +AI A+ + + +D+++VAGKGHET Sbjct: 402 VTSDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 461 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I + D +++ E+L Sbjct: 462 QIFKHQTIA-FDDREVVHEVLS 482 >gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] Length = 485 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 150/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF +L + I DD Y K Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G G + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIVDNSEIISYGIDGGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QNYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] Length = 485 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 234/480 (48%), Gaps = 19/480 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS Sbjct: 8 EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ N +++D+ R L AS Y + + T +S Sbjct: 68 VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +IG I + TTP + L K + + +V +E SSH L+ Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++ + FTNL +DH+DYH T + YF AK +LF +L + I DD Y K Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + ++S G + + + + I + + F L G+F +YN Sbjct: 240 LYDEFIVDNSEIISYGIDSGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNT 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QNYKVIVDYAHTPDALVNVIVA 354 Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Bacillus sp. m3-13] Length = 496 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 14/469 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + SDSR + +FV I G DGH +I AI +GA IVV QD + Sbjct: 23 VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVV------QDMPEQLVEG 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +T + L A+ + I+ VTGT+GK++V+S + + ++ G + Sbjct: 77 ICYVHVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLS 136 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +++ TT + + + L + GVT V +E SSHGL RL G++ Sbjct: 137 GTIEIDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLAGVEFQN 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+D+H T + Y NAK LF +L + G R Sbjct: 197 GVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQMTGAR 256 Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +++ G + + +++ NK + +F+ P GEF VYN L + Sbjct: 257 IITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVICVLWDK 316 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ +L HL + GR + + T + +DYAHT +++ L +IR + +II Sbjct: 317 GMPFERILNHLRETTPPSGRMQTLETGD-KRNVIIDYAHTEDAIGKALDSIRMFSKHKII 375 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 + G GG RD+ KRP MG+IA + ++ I T DNP E E+I + G F Sbjct: 376 SIIGTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQGMAEGAVHENFECIP 435 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R +AI A+E+ + DV+++AGKGHE ++ N E + +I + Sbjct: 436 DREQAIIRAVEIAGEGDVILIAGKGHENYQLIGN-ESVPFDEKEITLKA 483 >gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] Length = 483 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 233/502 (46%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ ++ ++S ++ ++ DSR++ G IF+A G + DG+ F Sbjct: 1 MNLKELLNNIEAKIYGKVSP-------IEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P AI GA AI S + +V N + + +++ Y + I+ Sbjct: 54 PLAIENGAIAIASS--------IYNPFLSVVQIVSSNLPQLEAELSAKYYNYPSKKLCIV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V+ ++ + S IG + + + TTP L K L+ + Sbjct: 106 GVTGTNGKTTVSHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +T +E SS GL RL + G TN+ DH+D+H + + Y NAK++LF + Sbjct: 166 VKNRLTSAVMEVSSVGLVLERLAEVDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSK- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP A++ D +Y+ ++ + + + G Sbjct: 225 LPATGLAVVNGDLSYASRFLEMTQAQPITYGI--ECPADYRAMHLRSSPFGTDFDLVYRG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G+ VYN L A + D ++ + GR E S Sbjct: 283 ESLPCRLPLIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESPRGRLE--PVFSGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++LE + K + + G++IVVFGCGGDRDQ KR IM ++ A+ Sbjct: 341 PIYIDYAHTPDALENVCKTLHALLPEQGKLIVVFGCGGDRDQSKRQIMAEVVERYG-FAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR EDPE+I I G F + +R +AI A+ + + +D+++VAGKGHET Sbjct: 400 VTSDNPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I + D +I+RE+L Sbjct: 460 QIFKHQTIA-FDDKEIVREVLS 480 >gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris RCH1] Length = 486 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 234/470 (49%), Gaps = 15/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR + G +FVA+ G DG FI QA+AQGA +V + A + Sbjct: 22 IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFA----V 77 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V D+ R L YG P ++ VTGT+GK+++ ++ + +G +G Sbjct: 78 AVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTV 137 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S + LTTP + L + L ++ GV +E SSH LDQ R+ GI+ Sbjct: 138 SYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVL 197 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH + YFNAK RLF EL + ADD + + ++ A L+ Sbjct: 198 TNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGFALT 257 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGI 327 HL + V + + + + PL G N L + + +G+ Sbjct: 258 GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGL 317 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + LE VPGR E + TN RG ++VDYAHT ++L +L+ +R + RI+ V Sbjct: 318 SPADFVH-LENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVTV 375 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444 FGCGG+RD+ KRP+MG AD+A++T DNPR EDP I ++ + G + + + Sbjct: 376 FGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEAD 435 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AI A+EML D L+VAGKGHE V + K D IREILG Sbjct: 436 RRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484 >gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] Length = 556 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 150/519 (28%), Positives = 232/519 (44%), Gaps = 60/519 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +N +S DSR I G +FVA+ G G +FIP AI +GA AI+ A + D R Sbjct: 33 IPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAILS--ATTASDVFVEYR 90 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + ++LS A Y + + + +TGT+GK+S A Q+ +G + Sbjct: 91 DEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGKTSCAQIYAQLSAFNGSAVG 150 Query: 146 QIGPTSTISSFAQDNR-----------------------------------------LTT 164 IG + + +TT Sbjct: 151 VIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQSRAGQPGYSLSLVSTGMTT 210 Query: 165 PSPIYLAKALSYLSSQGVTHVS-------VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 P I L + +E SSHGL+Q R+ + + + FTNL DH+ Sbjct: 211 PDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHDHL 270 Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKF 276 DYH AY NAK +LFE AI+ DD +S E+ K A S+ Sbjct: 271 DYHGDMVAYGNAKAKLFEMPTIN--LAIVNLDDEFSHELTTKIASTVRVISYSIDNANAD 328 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 ++L + H++ + + + PL G F + N L+A + + + V+ Sbjct: 329 LYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSN-LLAVLSVFSQQQNFSQVVASA 387 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 + L + GR E V N G ++ VD+AHT ++L+ +L+ + G + VFGCGGDRDQ Sbjct: 388 QYLQPISGRMESV-ENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGGDRDQ 446 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIE 454 KRP+M +A AD +VT+DNPRSE+P I +++ G R EAIR AI Sbjct: 447 SKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFSSNNHCVIEEREEAIRFAIH 506 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+AGKGHE+ ++ + +K D + L Sbjct: 507 HAKIGDMVVIAGKGHESYQLIGD-QKIPFSDRQVALSAL 544 >gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] Length = 538 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 149/523 (28%), Positives = 238/523 (45%), Gaps = 48/523 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L+DL+ L + + + DSR + G +FVA+ G K+ G + Sbjct: 14 RLKDLLTGLATFL---------DQDDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHVE 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPENI 117 QA+ GA A++ A + + + R + P++ V+N L A+R Y + + Sbjct: 65 QAVNNGACAVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQFM 124 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK+S + F+ Q+ G IG TTP + + K L Sbjct: 125 TVIGITGTNGKTSCSQFLSQMLDDCG----IIGTLGWGEWDKLNKTLNTTPDALAIQKIL 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L V++E SSHGL+Q R++G+ FTN+ RDH+DYH T AY AK+ L Sbjct: 181 AELLKDKKRTVAMEVSSHGLEQGRVNGVTFKGAVFTNISRDHLDYHGTMDAYVQAKLALL 240 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQ 289 + P + A + DD YS+ V+ + G+ + + + + Sbjct: 241 K--QPGLAFAAVNLDDGYSERVIAAVPESVQLWQFSVKGKTADSGECVSAENILHKTDGI 298 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + PL G+F V N L + +A+ + ++ L + V GR E Sbjct: 299 EFDVRFRDELQRVQVPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNGRMERF 358 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G + I+VDYAHT ++L+ +L ++R + VVFGCGG+RD GKRP MGKIA Sbjct: 359 GAET-DPMIFVDYAHTPDALDKVLSSLRKHCKQALWVVFGCGGNRDTGKRPQMGKIAEQW 417 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------------------GFIEKGNRIEAIR 450 AD ++TDDNPR E+ I +I+ G NR +AI+ Sbjct: 418 ADHVVITDDNPRYENGLDIVNDILAGCSSTAKDGGSVATDMEPVRPAKVEVIQNREQAIQ 477 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + K D +V+AGKGHE +NG D ++ + L Sbjct: 478 KVVASAAKNDCIVIAGKGHEQYQE-SNGVCVPFSDRQVVIDAL 519 >gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 492 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 154/501 (30%), Positives = 231/501 (46%), Gaps = 25/501 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 AIA GA + F+ P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDDGK---FTWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEEATHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY ++ Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229 Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 AII DD Y E+ +K+ + I + A + + Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G F N L A G VLE L K+ GR + NS Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ AD Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +VT DNPR E+P+ I +I+ +P + +R AIR A+E D++++AGKGHE Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHENY 468 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G K D ++ + L Sbjct: 469 QDMQ-GVKHHFSDFEVAEKAL 488 >gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 510 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 159/499 (31%), Positives = 248/499 (49%), Gaps = 12/499 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + K + Q + ++ + +DSR +Q G +F+ + G++ DG F+ QA+A Sbjct: 8 LSKLLHQAGIQPQLAQGSLEGVQVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALAA 67 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI--LAVTG 122 GA A ++S + P+LV+ + + ++ A+ YG + + VTG Sbjct: 68 GAVAALISQEAWESVSGEAGWGSQPVLVLPRASLNRAVAQVAAAFYGFPARQLTLVGVTG 127 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK++ ++ + Q +G S+ +G + +++ TT P L ++L G Sbjct: 128 TNGKTTTTHLIEHLVQAAGRSAALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRAG 187 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +E SSH L Q R+ G A +TNL +DH+D+H + + Y+ AK LF + + Sbjct: 188 AEVAVMEVSSHALAQDRVWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQE-YLQ 246 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGK 298 A+I ADDA + +++ + I V + Q T+ Sbjct: 247 GRAVINADDAGGRRLLQAIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTPSG 306 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F PL G F + N L A G+ + +GI ++ L VPGR E V + + Sbjct: 307 AFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTLPGQDIAV 366 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE +LK +R+ G++I VFGCGGDRD+GKRP MG+IA AD IVT D Sbjct: 367 IVDYAHTPDGLENLLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRIAATWADQVIVTSD 426 Query: 419 NPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 NPR+EDP++I +I+ GIPG + +R +AIR AI D +V+AGKGHE I+ Sbjct: 427 NPRTEDPQQILRDILAGIPGSPRAVEVDRRQAIRLAILAAQPGDTVVIAGKGHEDYQILG 486 Query: 477 NGEKKMSVDCDIIREILGL 495 EK D + R L L Sbjct: 487 T-EKIHFDDREEARAALAL 504 >gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 490 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 154/477 (32%), Positives = 238/477 (49%), Gaps = 26/477 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S S+ ++ IF A G K DGH FI +AI +GA +V + N Sbjct: 25 IKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKK------PVLLHKN 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V N+ L +S Y + I + +TGT+GK+SVA+ + + + G S I Sbjct: 79 ITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEKSILI 138 Query: 148 GPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 S + TTPS + + K L+ +G + +E SSHG+ Q R+ G+ Sbjct: 139 STMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQKRIAGLLFTG 198 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+ DH+DYH++ + Y + K FE LPK + A+I +DD S E++K + Sbjct: 199 GVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIKNVL---AK 255 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + G + K + K+ + + K F F L GEF V N L I +G Sbjct: 256 IYFYGLKKKTDYRIKIMKKNIHGNQLLIDGHKFFTF---LIGEFNVSNLLACYATAILLG 312 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 +L+ + + + GRFE + G RI VDYAH + ++ +LK I+ I R+ Sbjct: 313 KKKEEILQKINTIPPIKGRFEQF-ISYSGIRIIVDYAHNPDGIKNLLKAIQEIKKQEERL 371 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-------HGIP 437 I + GCGG+RD+ KR +MGKI + D++I T DNPR EDPEKI ++ Sbjct: 372 ICIIGCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILIDMKNFRSYLNKDKE 431 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + NR EAIRTAI+M ++D++V+AGKGHE + G++ D +I + + Sbjct: 432 DILTIVNRKEAIRTAIQMAREKDIIVIAGKGHENYQEIQ-GKRYPFDDMEIAKTLFS 487 >gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] Length = 485 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 240/471 (50%), Gaps = 21/471 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 18 NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++D R L AS Y + P+ L + G +G + S I + G + Sbjct: 73 --KVSYVLIDEIRHKLGYLASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129 Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G I + TTP + L K + + +V +E SSH L+ R+D + Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH T + YF AK +LF + L + ++ DD Y K++ Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDTNNSVFNIDDKYGKKLYDEFIEDN 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++S G G + + + + + I + K F L G+F +YN L A + + Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVK 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383 +GI +LE + + PGRFE + + ++ VDYAHT ++L ++ R I +G R Sbjct: 305 MGIKWEDILERISNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 II +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++ G + Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTGFAKNDDYF 423 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +R +AI+ AI M K D++++ GKGHET HI+ +K D +I R Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473 >gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] Length = 492 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHDLQHAVINVDDEYGAELVGRLKKDCPDLVV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D ++ + L Sbjct: 440 DRAAAIRYAVERAAASDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488 >gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 769 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 146/514 (28%), Positives = 253/514 (49%), Gaps = 37/514 (7%) Query: 11 FPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 EL+++ + P+ E +I + DSR + +G +FV VG K DGHL++ +A +G Sbjct: 243 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRG 302 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A A+V S +++ +++V++T L A+ YG +N+ + + GT+G Sbjct: 303 AVAVVASKEIDIEETLGCKA----LVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNG 358 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ A ++ + + GL + + + + TTP + + K ++ + G Sbjct: 359 KTTTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTE 418 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +EASSHGL R + + FTNL RDH+D+H++++ Y NAK +LF ++ + Sbjct: 419 AVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRH 478 Query: 244 AIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I D + + + + ++ + +H K + QV + + Sbjct: 479 RKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILE 538 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G +YN L A + IA+G ++ +E++ VPGR E + + + VD Sbjct: 539 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELI-DEEQAFGVIVD 597 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +L ++R + + RII VFGC G+ D+GKRPIM KIA D +D+ I+T DNP+ Sbjct: 598 YAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPK 657 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEMLNKQ 459 +EDP I +++ G+ + + A A+ M + Sbjct: 658 NEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEG 717 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++VVAGKGHET I + +K+ D + RE L Sbjct: 718 DIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 750 >gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 487 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 156/500 (31%), Positives = 254/500 (50%), Gaps = 25/500 (5%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I K +L+ + +Q + E ++ ++ D+R + G +F+ + D H F +AI Sbjct: 1 MIGKKLVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 QGA +++ + I+ VD++RK +S+ A Y K E ++ VTG Sbjct: 61 KQGATILMIEHEID------QVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLS 178 T+GK+S+ F+ Q+ G + IG + TTP I L +L + Sbjct: 115 TNGKTSITHFIAQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEML 174 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G T+ +E +S L Q+R+ G+ G FTNL +DH++ H T +AY AK++ L Sbjct: 175 DKGATYGVMEVTSSALAQNRVYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLK-----L 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K I D E +K+ + + + F +++ + GK Sbjct: 230 FKNCRIGIVNQDDLMAEKIKQEGHCKVITYGIDKKADF-KAEQIHQGLTGVDFKLIYLGK 288 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + FP+PG F VYNAL +++G + +LE L ++ VPGRF+ + N++G + Sbjct: 289 QYSINFPVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRFQIIP-NTKGVLV 347 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH+ +SL+ +L+ + + SG++ VVFGCGGDRD KR MG +A +D+ I+T D Sbjct: 348 VVDYAHSPDSLKQLLQTTKDLISGKLTVVFGCGGDRDTSKRAEMGTMAGAYSDLTIITSD 407 Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+E PE+I A+I GI + NR AI A+ + D +V+AGKGHET + Sbjct: 408 NPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKGHETYQL 467 Query: 475 VTNGEKKMSVDCDIIREILG 494 + N +K DC+I+ L Sbjct: 468 IGN-QKWHLDDCEIVSNYLN 486 >gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 492 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 145/502 (28%), Positives = 229/502 (45%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +LI ++ Q+ P I+ +S +SR + +F+ I G DGH F+ Sbjct: 1 MNTYELISSL--KIKQQIGKLPN-----TISSISHNSRQVDDNSLFICISGFTVDGHNFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A+ GA IV +L + +++V +T K ++ A+ Y N I Sbjct: 54 AEAVENGATCIVAEREVNLD------TNKATLIIVPDTNKAIATLAATFYKHPSHNLTIY 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKALSY 176 VTGT+GK++V + + + + LS+ IG + + TT + L Sbjct: 108 GVTGTNGKTTVTTIINHLLTDNELSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233 +QGVTHV++E SSHGL+Q RL GI +FTNL +H+DYH + + Y K Sbjct: 168 AKNQGVTHVAMEVSSHGLEQGRLWGIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSS 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 K+ A++ DD + + KR + ++ + Sbjct: 228 LAIQPNKQKIAVLNRDDNWYEYFQKRTPVQIVSYGIYEQAD--FRATAIKYYKDRTSFEL 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTN 352 F L GEF VYN L A I +++ +E PGR E + + Sbjct: 286 LTPEGSFQVQTKLMGEFNVYNVLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKL-ES 344 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 S IY+DYAHT ++L + ++ ++IVV G GGDRD+ RP++ K A +AD Sbjct: 345 SGNRHIYIDYAHTPDALTKAINSLLPFKQNKLIVVVGTGGDRDKSIRPLLAKAAS-VADY 403 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T ++PR EDP I ++ +G+ + NR EAIR AI + D++++AGKG E Sbjct: 404 VILTINDPRHEDPNNILQDLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKGKE 463 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 I+ N +K D I E Sbjct: 464 PYQIIKN-KKVAHNDATIALEC 484 >gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans C54] Length = 954 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 240/484 (49%), Gaps = 25/484 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR I+ G +FVA G DG L+I +A+A GA A++ + + +A +TP Sbjct: 30 HLKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTP 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V R L YG+ ++AVTGT+GK+S ++ R+ IG Sbjct: 90 MLPVTGLRALLGELGDTWYGRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGT 149 Query: 150 TSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + Q LTTP + + + L+ + G V++EASS G++Q R+DG+++ Sbjct: 150 LGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 209 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNA 263 ++TNL RDH+DYH T + Y AK LF P S A++ ADD + ++ Sbjct: 210 AYTNLTRDHLDYHGTMERYEAAKASLFRW--PGLSAAVVNADDEAGRRLIASLPADLSVM 267 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + + + + A Q T+ + + L G V N L+ AG+ Sbjct: 268 GYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLY 327 Query: 324 AIGIDSALVLEHLEKLHVVPGRFE--------FVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +G+ A + L V GR + RG + VDY+HT +SL L Sbjct: 328 KLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARALMA 387 Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R + GR++ VFGCGGDRD GKRP MG+IA +LAD +V+ DNPRSE P+ I A+I Sbjct: 388 LRPVAQARAGRLVCVFGCGGDRDAGKRPEMGRIAAELADHVVVSSDNPRSESPDAIVAQI 447 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + GIP + +R AI AI +DV+++AGKGHET + GEK D + Sbjct: 448 LAGIPASVAVEVQVDRARAIMQAIWASAPEDVVLLAGKGHETYQEIA-GEKLPFDDREWA 506 Query: 490 REIL 493 R L Sbjct: 507 RLAL 510 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 80/429 (18%), Positives = 152/429 (35%), Gaps = 33/429 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55 L+ E +++ + + +R+ + VS+D+R I AG +FVA+VG D Sbjct: 481 LLAGKGHETYQEIAGEKLPFDDREWARLALLLPLVKGVSTDTRRIGAGELFVALVGENFD 540 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H ++ QA +G A + A S+ P LV+ +TR L + + Sbjct: 541 AHNYLDQAAERG--------ACAAVVAHAVPESSLPQLVLGDTRVALMRIGAAWRARFKL 592 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++AVTG++GK++ + + + ++ +++ + L Sbjct: 593 PVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGNLNNDIGVPLT----VLRLRPEHR 648 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + E + + TN R+H ++ T +A A Sbjct: 649 AAVFELGMNHPGEIAQLAAIAAPSVAL------VTNAQREHQEFMHTVEAV--ALENGAA 700 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +Y D + R + G ++ +++ A + + + Sbjct: 701 IAALPADGVAVYPGDEPYAAIWDRLAAPRRALRFGLQPGLDVYAEQILADVDSTRCRVVT 760 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D P+PG + NAL A IA G + + L V GR ++ + Sbjct: 761 PVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSPVAGRMQYKKLSDGT 820 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DI 412 I Y +S+ + + I R++V+ G GD +G A +L D Sbjct: 821 LLIDDTYNANPDSVRAAIDVLARIAGTRVLVLGDMGEVGDNGPAMHEEVGNYARELGLDA 880 Query: 413 AIVTDDNPR 421 I D R Sbjct: 881 LITLGDASR 889 >gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 495 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR ++ G FVAI G G F+ QA A GA A++ Sbjct: 19 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ + ++ VTGT+GK+S + Q G + Sbjct: 79 A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + ++ Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN +++ G+ PL G F V N L AG Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDALVAAQAL 485 >gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 491 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR ++ G FVAI G G F+ QA A GA A++ Sbjct: 15 DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ + ++ VTGT+GK+S + Q G + Sbjct: 75 A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L G V++E SSH LDQ R+D + Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGRVDAVH 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + ++ Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALR 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN +++ G+ PL G F V N L AG Sbjct: 250 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDALVAAQAL 481 >gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 502 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 155/505 (30%), Positives = 231/505 (45%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L + + I I + +DSR I+ G +FV + G DGH + Sbjct: 1 MILKSLTERLILKTITGS-------LSVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAI GA AIV S + N ++ V +TR+ L + A+ YG + ++ Sbjct: 54 EQAIRNGAVAIVAERELS------GLSENVTLITVPDTRRILPILANAFYGDPTQRLKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V +I + + IG I + A+ TTP I L + + Sbjct: 108 GITGTNGKTTTTHMVDKILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 S G + +E SSHGLD R+ G FTNL DH+D+H+T ++Y N +L Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 A++ ADD S KR + Sbjct: 228 GNSNRDMLKKAVLNADDDASSYYAKRTSAQIITYGIQNQADV--RATHIHHTREGCAFHA 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G +YNAL A C+ GI + E L + V GRF+ + T Sbjct: 286 ETPWGSSEVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGR 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R + VDYAH + L+ L++ + ITSG++I V GC G+RD+ KRPIM IA AD Sbjct: 346 R-FGVVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIASSYADYV 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + T DNP SEDPE+I AE++ G+ + +R EAI+ A+EM +D +++ G+G Sbjct: 405 LFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRG 464 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET VT + D DI+ L Sbjct: 465 HET-RYVTGSRIESFSDEDIVMSSL 488 >gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa] Length = 487 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 151/485 (31%), Positives = 237/485 (48%), Gaps = 14/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ +FP R+ I E++ DS ++ +F+ + G +DG I A+ +GA A+ Sbjct: 3 MSLSQLFPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYE 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + + + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ Sbjct: 63 AEGAGELPP----SDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T A ++ R TTP P+ + L+ L G V++E SS Sbjct: 119 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + FTNL RDH+DYH + +AY AK +LF + + DD Sbjct: 179 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINL--DDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + ++ S+ F++ ++ + S+ K PL G F Sbjct: 237 FGRRLAGEEQDSELITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + +G +L L +L GR + +G + + VDYAHT ++LE Sbjct: 297 LSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGGKPL-VVVDYAHTPDALEK 355 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+ Sbjct: 356 VLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIAD 415 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G +R EAI I DV+++AGKGHE + +G + D + Sbjct: 416 IRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQ 474 Query: 489 IREIL 493 L Sbjct: 475 AERAL 479 >gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 499 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 146/488 (29%), Positives = 233/488 (47%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 +QW ++ + S DSR +++G IF+A+ K +F A+A GA AI+ + Sbjct: 13 IDVQWSKQPFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132 L++ V N R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGLENE----------WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQQCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK LF K + + + A Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEYA 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A ++L+ ++ + + + F PL G Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G D ++ + +L PGR + + R VDYAHT ++L Sbjct: 301 FNVENLIAALIAAEQAGFDLEALVAFVPQLIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ + D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 ++ + Sbjct: 478 VVEVQSAI 485 >gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] Length = 512 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 161/504 (31%), Positives = 238/504 (47%), Gaps = 14/504 (2%) Query: 1 MKLQD-----LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 M L+ + +L+ + ++ V+ +H QAG +F A+ G+K Sbjct: 1 MNLRPSHPVGMPLGALADLVCAEPADAGPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAH 60 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G + A+ +GA A++ + + +A PILV R L A+ ++G+ E Sbjct: 61 GARYAADAVERGAVAVLTDADGVSE-IAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSE 119 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172 ++ VTGTSGK++ V+ + +G + IG AQ LTTP L Sbjct: 120 HLRVIGVTGTSGKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQA 179 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + QGV V +E SSH L R+DG+ G FTNL RDH+D+H T Q YF AK R Sbjct: 180 LLAAMLEQGVDTVVMEVSSHALTLGRVDGVSFAVGGFTNLSRDHLDFHPTMQDYFEAKAR 239 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L + P + + D M +A V G ++ + + + Sbjct: 240 LVDPTSPTHAARSVICVDDEWGRAMAARADAPVTVSVTGDADWWVQEVRALDGGVQDFLA 299 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + G LPG + V N L+A L A+ + L V PGR E V Sbjct: 300 VDPAGVHHALEIGLPGGYNVANCLLAVALLDAVDVSPEQAAPGLRDATV-PGRLEAVDRG 358 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAH +L +L+ +R +GR+ VVFG GGDRDQGKR MG++A +LAD+ Sbjct: 359 Q-PFLALVDYAHKPGALAAVLQTLREQCAGRLAVVFGAGGDRDQGKREPMGRVAAELADL 417 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VTDDNPR EDP IRA I+ G G +E G+R AI A++ + D++++AGKGHE Sbjct: 418 VVVTDDNPRGEDPAVIRAAILRGASGAQTVEIGDRRAAIVHAVQWAREGDIVLIAGKGHE 477 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G + D D + L Sbjct: 478 AGQT-SQGRTRPFDDRDELAAALE 500 >gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 506 Score = 296 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 225/475 (47%), Gaps = 17/475 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I G FVA+ G G +IP A+ +GA+ +V A + + + Sbjct: 33 VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVA-PASARDLVAPAVEKRALA 91 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + DN L L A + ++ +TGT+GK++ + ++ + +G+ +G Sbjct: 92 VYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTV 151 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + F D LTTP + + L + V +E SSH LDQ+R+ G+ A Sbjct: 152 NYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVL 211 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-------RAHN 262 TN+ +DH+DYH + YF AK RLF L +I +D Y + ++ Sbjct: 212 TNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGIG 271 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V + + + Q+ S +GK + PL G F N L A + Sbjct: 272 DSSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAVG 331 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + +G++ + L+ VPGR E V N +G I+VDYAHT ++LE + ++++ Sbjct: 332 LQLGLNCKD-MCVLKDFPGVPGRLERV-INDQGLDIFVDYAHTPDALENVQHTLKSLDFK 389 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439 R+I VFGCGGDRD+ KRP+M K AD+A++T DNPRSE PE I + G+ Sbjct: 390 RLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDARPGLARAAVV 449 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E +R AI A+ + DVL++AGKGHE + G D + +G Sbjct: 450 LEHPDRQTAITMAVAGMQPGDVLLIAGKGHEDYQQIA-GTTIHFSDKEAALRAIG 503 >gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] Length = 499 Score = 296 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 234/490 (47%), Gaps = 34/490 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW + S DSR ++ G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAQWPRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DDA Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238 Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ++ ++K A N + S+ ++ + + + F PL Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLL 298 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N + A G D ++ + KL PGR + + + R VDYAHT + Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+ Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A++ GI E +R EAI+ E D++V+AGKGHE + NG + Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475 Query: 484 VDCDIIREIL 493 D +R + Sbjct: 476 DDVVEVRSAI 485 >gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 296 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 158/469 (33%), Positives = 247/469 (52%), Gaps = 19/469 (4%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 S + AG +FVA+ G + DG FIP A+A+GA IV + L + + ++ D Sbjct: 25 SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGATAR-----LVTHD 79 Query: 97 NTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153 + R+ L A +G H ++ VTGT+GK++++ ++Q+ SG +G S Sbjct: 80 DPRQALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRW 139 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 F+ D LTTP + L + L+ + GV +E SSH LDQ R+ G+ A TNL Sbjct: 140 PGFSMDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAGLAYDAAVLTNLT 199 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 +DH+DYH+ + YF AK RLF EL + ++ +D Y +++ +AG VL G + Sbjct: 200 QDHLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLGYGLE 259 Query: 274 GKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + A + EG+ F+ + PL G N L A G+ +G+ Sbjct: 260 TPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLGLR 319 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 ++ L V GR E V TN G ++VDYAHT ++L +L ++ + R++ VF Sbjct: 320 -ESDMQALAGFTGVSGRLERV-TNPHGLNVFVDYAHTPDALVNVLSAVKALGVRRLVCVF 377 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNR 445 GCGG+RD+ KRP+MG+ AD+A++T DNPR EDP I ++ + G + + +R Sbjct: 378 GCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLAIIEDVKPGLSGCARVVIEPDR 437 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AI A+E L +D LVVAGKGHE + + K D ++RE+LG Sbjct: 438 RKAIALALEGLTAEDALVVAGKGHEPYQQIGD-VKHPFSDQQVVRELLG 485 >gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9215] gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9215] Length = 514 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 237/503 (47%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG F +AI GA Sbjct: 5 KLHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + + + R ++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGSA-AKERIGSIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244 +E SSH + Q R+ G + A FTNL +DH+DYH ++YF K + F L ++ Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGI 242 Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + + S F + + + Sbjct: 243 SVLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + ++ PGR E + + Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSR 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA +L+D Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] Length = 496 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 136/503 (27%), Positives = 229/503 (45%), Gaps = 30/503 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+ L+ E++ R+I V DSR G +FV I G DGH F P Sbjct: 4 NLKTLLQGLEYEIL-------QGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAP 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 + ++GA A++V +A + + ++ V+N+R+ L+L ++ + + + Sbjct: 57 EVASKGAAALIVETAVD-------VPAGVTVVKVENSRRALALISAEWFDHPAKKLKTIG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT GK++ + VQ I +G IG TI + TTP + + + + Sbjct: 110 ITGTKGKTTTSYMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMV 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ V +E SS L R+ GI G FTNLG+DHI + ++ L Sbjct: 170 EAGLDSVVMEVSSQALKYDRVTGIHFDFGIFTNLGQDHIGP---NEHEDFEDYLASKKKL 226 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + I D + + + + + + I + + Sbjct: 227 FDQCTIGIVNRDDKLFDRIVEGAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQTE 286 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +PG+F VYN+L A +C G+ +++ L + V GR E V + Sbjct: 287 GLVNIPVEVDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQARV-KGRVEMVKVSD-K 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + +LE +L +R R++ +FGCGG+RD+ +R MG+++ +AD I+ Sbjct: 345 FTLMIDYAHNAMALESLLSTLREYHPARLVCLFGCGGNRDRERRFSMGEVSGKMADFTII 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +I+ GI + +R EAI AI D++V+AGKGHE Sbjct: 405 TSDNPRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKGHED 464 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 I+ + +K + +I EIL Sbjct: 465 YQIIKD-KKYPMDERVLIAEILE 486 >gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9515] gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9515] Length = 511 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 242/503 (48%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ + I P + + KIN +S +S+ +Q G +F+ + G DG + +AI GA Sbjct: 5 KLHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ SA + Q + R ++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGSA-AKQKIGSIDRKRILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLFEELLPKESP 243 +E SSH + Q+R+ G + A FTNL +DH+DYH ++YF K+ L K+ Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGI 242 Query: 244 AIIYADDAYSKEV-----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +++ DD + ++ + + S + F + + + Sbjct: 243 SVLNIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPRE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355 PL GEF + NA+ A + + + + ++ PGR E + ++ Sbjct: 303 KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSS 362 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +LK+I+ + G++I VFGCGGDRD KRP+MG IA + +D Sbjct: 363 LLPTLIVDYAHTPDGLKKVLKSIKKLCEGKLITVFGCGGDRDCSKRPLMGSIAAEFSDHL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSEDP+KI +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + D I ++L Sbjct: 483 DYQILNDKVID-FDDRKIAYKLL 504 >gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] Length = 530 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 156/533 (29%), Positives = 246/533 (46%), Gaps = 69/533 (12%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +++ + +S +S+ ++ IF AI G DG+ FI + + Q ++ + + Sbjct: 4 NLKQLFQKHNVKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVALVITDNKKNT 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + ++ V++ + L Y K P+N++AVTGT+GKSSV S++ Q Sbjct: 64 I-------IDDKVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSL 116 Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G + IG + LTT + K L+ + +++ EASSHGL Sbjct: 117 LGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGL 176 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS- 253 +Q RL IK+ FT+ +DH+DYH T++ Y AK++LF L K + + D Sbjct: 177 NQARLGEIKVNTACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHS 236 Query: 254 -----------------------------------------------KEVMKRAHNAGCR 266 E +K Sbjct: 237 TTAYILVREDASTGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNI 296 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + + K+ Q + ++ F + G FQ N L+AA IG Sbjct: 297 KFITVGKKGDVQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIG 356 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 D ++E L ++ V GR E +G I+VDY+HT ++LE L ++ + R+ Sbjct: 357 FDFNKIIEILTQVKPVKGRMERIG----NTNIFVDYSHTPDALEKALTELKNVKLRDSRL 412 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442 VVFGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEII GI + E Sbjct: 413 NVVFGCGGNRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEI 472 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 NR EAI+ I L + D+L++AGKGHE I+ + +K D +I+R+++ L Sbjct: 473 ANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVRKLMSL 524 >gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 159/466 (34%), Positives = 245/466 (52%), Gaps = 16/466 (3%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 S + +G +FVA G EDG FIP A+A+GA IV +L + + ++ VD Sbjct: 28 SAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPEGAKAA-----LVTVD 82 Query: 97 NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 RK L L A+ G + ++ VTGT+GK++V+ ++++ +G +G + Sbjct: 83 EPRKALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRW 142 Query: 155 SFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 +D LTTP + + ++L+ +++ G +EASSH LDQ RL G+ AG FTNL Sbjct: 143 PGVTRDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAAGVFTNLT 202 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 +DH+DYH+ + YF AK +LF E LP + A++ DD + ++K A L+ Sbjct: 203 QDHLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGYGLTKAPA 262 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G L H++ + D F+ P+PG N L A G + +G+ Sbjct: 263 GFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYET 322 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + H PGR E + N+ G ++VDYAHT ++LE +L R T+GR+ VFGCG Sbjct: 323 FDALADC-HGAPGRLERIP-NASGLTVFVDYAHTPDALENVLGAAREFTAGRLFAVFGCG 380 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEA 448 GDRD+ KRP M + LAD+A++T DNPR E P I + G+ I + +R A Sbjct: 381 GDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKARKVIIEPDRRRA 440 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I A++ + +DVLV+AGKGHE+ + + K D ++RE+ G Sbjct: 441 IALALDAMRPEDVLVIAGKGHESYQQIGD-VKHPFSDAAVVRELTG 485 >gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] Length = 522 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 153/488 (31%), Positives = 224/488 (45%), Gaps = 33/488 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR +Q G +F A+ G G ++ A+ GA A++ A + + I Sbjct: 39 ICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA-----SLINRE 93 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L+ + RK L A+ +YG L VTGT+GK++ F+ + +G + + Sbjct: 94 VPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAAGHRTGLL 153 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + TTP + L+ + G+T ++E SSH L HR+DG Sbjct: 154 GTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRVDGTGFAC 213 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL DH+D+H + YF AK RLF A+I DD Y + + Sbjct: 214 VGFTNLSHDHLDFHGDMENYFAAKARLFRP--DFAPKAVIVVDDEYGRRLADTAPIAVRT 271 Query: 260 -----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 H R Q T++ + + LPG F + N Sbjct: 272 VSGRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLPGRFNLTN 331 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL+A + + +GI + L VPGR E V + VDYAHT ++ + + Sbjct: 332 ALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQ-PFAVLVDYAHTPEAVATVAR 390 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I+V GCGGDRD KRP MG A +LAD+AI T DNPRSEDPE+I A ++ Sbjct: 391 EVRP-DRGRLIIVIGCGGDRDPSKRPAMGAAAAELADLAIFTSDNPRSEDPEEIVAAMLT 449 Query: 435 GIPGFI--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G+P + +R EAI+ AI+ DV+++AGKGHE + G D Sbjct: 450 GVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKGHEQGQEIG-GVVHPFDDR 508 Query: 487 DIIREILG 494 R+ L Sbjct: 509 LAARDALR 516 >gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB056] gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB058] gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB059] gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] Length = 499 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 236/490 (48%), Gaps = 34/490 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ + S DSR ++ G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DDA Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238 Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ++ ++K A N + S+ ++ + + + F PL Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N + A G D ++ + KL PGR + + + R VDYAHT + Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+ Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A++ GI E +R EAI+ E D++V+AGKGHE + NG + Sbjct: 417 IFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475 Query: 484 VDCDIIREIL 493 D +R + Sbjct: 476 DDVVEVRSAI 485 >gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] Length = 810 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 145/478 (30%), Positives = 218/478 (45%), Gaps = 18/478 (3%) Query: 30 INE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 I+ + +DSR IQ IF+A G DG L+I AI GA + + Q Sbjct: 20 ISGSQTLHADSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWA 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQ--RSGL 142 SN PI + ++ + A+ +Y NI VTGT+GK+S+ ++ Q + Sbjct: 80 VSNQPI---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKK 136 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S IG Q+ TTP P+ + L G H+++E SSHGL Q+R++G Sbjct: 137 SCAIIGTVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNG 196 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKR 259 + FTNL RDH+DYH + Y K RLF + + + ++ ++ Sbjct: 197 VPFKTAIFTNLTRDHLDYHNSMAEYGATKARLFHWQGLENAIINSDDEFGSKLILQLKQQ 256 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + I + + A ++ + + L G F N A Sbjct: 257 YADNLNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAI 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G A G + L L ++ GR + N + VDYAHT ++LE L +R I Sbjct: 317 GALCASGFEFQAALNALSQIRPATGRMD-CIINENKPLVVVDYAHTPDALEKALTTLREI 375 Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 ++ VFGCGG+RD GKRP+MG +A +D IVT DNPR EDP+ I A+I+ +P Sbjct: 376 QSPESKLWCVFGCGGNRDSGKRPLMGAVAAQHSDRPIVTSDNPRMEDPQAIIADILPAVP 435 Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R AI I QD++++AGKGHET V G K D ++ LG Sbjct: 436 NAALVQVDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDVQ-GVKHHFSDFEVAENALG 492 >gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] Length = 492 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYD--AIKSRLFYWQDLQHAVINIDDEYGAELVCRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YGYGFSERADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+ D++++AGKGHE V G K D ++ + L Sbjct: 440 DRAAAIRYAVGRAAVNDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488 >gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] Length = 1084 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 158/510 (30%), Positives = 237/510 (46%), Gaps = 41/510 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + +R I ++ DSR ++ G +F A+ G K DG Sbjct: 594 MKLDALLSHSAI-------VKVVGPTDRDITHLTYDSRRVKPGTLFFALKGEKVDG---- 642 Query: 61 PQAIAQGAEAIVVSSAYSLQDF--------SATIRSNTPILVVDNTRKFLSLFASRLYGK 112 + + +AT R+ +VV N R ++ FA+ Y Sbjct: 643 ------------TAFIDAAIAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQN 690 Query: 113 HPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIY 169 I VTGT+GK++ A ++ IC+ + L +G I TTP + Sbjct: 691 PARALKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLD 750 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + + L + S G ++E SSH L Q R+ ++ A FTNL +DH+DYH+T +AYF A Sbjct: 751 VHEMLWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEA 810 Query: 230 KMRLFEE---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 K R+F E K+ AII DD Y +++ R A V Sbjct: 811 KARMFSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPITTYGLGVHADFRASNVRIDF 870 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + G+ + PL G+F VYN+L A A+GI+ + L VPGR Sbjct: 871 HGTSYQLDAGGRSYLVRLPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGRL 930 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V + R++VDYAHT ++L ++K R + R+IVVFGCGG+RD+ KRP MG + Sbjct: 931 EAVPAQRQ-FRVFVDYAHTDDALLNVIKTCRELNPARLIVVFGCGGNRDKTKRPRMGAVV 989 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 AD AIVT DNPR E+P I +I G+ + +R EAI A+ M +D++++ Sbjct: 990 DQHADHAIVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAVAMAQPRDIILI 1049 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AGKGHE + D + R+ L Sbjct: 1050 AGKGHENYQEFAD-RTMPFDDVAVARQALE 1078 >gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium sp. P08] Length = 529 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 148/494 (29%), Positives = 230/494 (46%), Gaps = 23/494 (4%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ L I ++ DSR ++ G ++V + G G F A GA A++ Sbjct: 29 DLMASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVL 88 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVA 130 + + + P+++VD+ R +++ A+R++G + +TGT+GK++ A Sbjct: 89 TDEHGA----KLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTA 144 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVS 186 V+ + +G IG + +TTP L + + +G + V Sbjct: 145 FLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVV 204 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+DG +FTNLGRDH+D+H+T YF AK RLF L + Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVIN- 263 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD +++++R G R ++ + A ++ + Sbjct: 264 -VDDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELS 322 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPGEF V NA +A + G+ V + L V PGR E V + VD+AHT Sbjct: 323 LPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHT 381 Query: 366 SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++ L R++ SGR+I V G GGDRD KR MG++A + ADI ++TDDNPR+ED Sbjct: 382 PQAIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTED 441 Query: 425 PEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 P IRA ++ G I + R EAI A+ M DV+ V GKGHET + + Sbjct: 442 PAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS 501 Query: 478 GEKKMSVDCDIIRE 491 E D ++IR Sbjct: 502 -EVLPFDDREVIRN 514 >gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 463 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 143/466 (30%), Positives = 224/466 (48%), Gaps = 23/466 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +S+ + +F AI G +DGH FI +AI +GA +V + Sbjct: 12 NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPFKDFKN--------- 62 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+VV++++K + E ++ VTGT+GK+S + I + Sbjct: 63 IIVVEDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTM 122 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + + TTP LS +G+ V+ E SSH LDQ R+ K A F Sbjct: 123 YYKLGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLRVYPTKFFATVF 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH+T + YFNAK RLF++ + ++ DD Y + + + Sbjct: 183 TNLTQDHLDYHKTMENYFNAKRRLFKD--YEYEVCVLNIDDDYGSMLYEEFKDKAITYGY 240 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 I + K ++ L G+FQ YN + L +G D Sbjct: 241 SENAHLKIDYFDQENKVFG----FYYKNKHYEIKTNLKGDFQAYNMGASILLGFYMGFDI 296 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + L +PGRFE G ++ +DYAHT ++LE +LK + IT R+I VFG Sbjct: 297 EEIQRGILSLSSIPGRFE--TIELNGVKVVIDYAHTPDALEKLLKTAKAITKNRLICVFG 354 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GG+RD+ KRP MGKIA +L+DI+I+T DNPR E+ I +I+ GI G + + +R Sbjct: 355 AGGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSKGPMVEEDRK 414 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +AI A+++ DV+V+AGKGHE + G K D + + + Sbjct: 415 KAIALALDIALDGDVVVIAGKGHEDYQEIK-GVKYHFSDKEEVLKY 459 >gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] Length = 508 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 149/506 (29%), Positives = 243/506 (48%), Gaps = 18/506 (3%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +++I +++ + +I ++ +S+ I+ +IFVAI G K+DGH + Sbjct: 1 MKLFKEIIKGYK---VSKEKQLTKECLNIEIRGIAYNSKLIKNKYIFVAIKGLKDDGHKY 57 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPEN- 116 I AI A I+ ++ + + V N R+ L+ +++ + + + Sbjct: 58 IESAINNKAAIIIYDNSADKNFIKELEDKHTYVYFIAVKNPRECLAYISAKFFDEPTKKI 117 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 +A+TGT+GK++ ++ + + + + IG + I LTTP I L Sbjct: 118 NTIAITGTNGKTTTTYLLKSVLEANKNKTALIGTIKNMIGKTEIKTNLTTPESIDLENIF 177 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231 + V+H+ +EASS L R D + FTN+ DH+DYH Q Y AK Sbjct: 178 DKALKKEVSHIVMEASSQALAMDRCDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLF 237 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L +E + AI+ D K++ G ++++ G K + K+ ++++K Sbjct: 238 SLLKESSKNKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGLNEKADYYGKIISLNSKNTE 297 Query: 292 TISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F + G F + N+L +D ++ + K+ V GRFE V Sbjct: 298 YEFYSKGKFISKVKLSMLGRFNILNSLSVLAYVSEYKLDIEKSIKAMRKVQV-AGRFEIV 356 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 VDY+HT +SLE ILK R + R+IVVFGCGGDRD+ KRPIM IA Sbjct: 357 TKEKHPFIAAVDYSHTPDSLENILKEARKLNPKRVIVVFGCGGDRDRKKRPIMASIAEKY 416 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 +DI+I+T DN R+ED +I +I G + + +R EAI AI+ + D++++AGK Sbjct: 417 SDISILTADNQRTEDINQIMNDIEKGFKNKDYKKIIDRKEAIFEAIKEAKENDIVIIAGK 476 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET I + + D +I RE L Sbjct: 477 GHETYQIFPD-KTIHFDDREIAREAL 501 >gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] Length = 495 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 168/502 (33%), Positives = 250/502 (49%), Gaps = 25/502 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL+ + + + I ++ D+R I G +FVA+ G+ D FIP Sbjct: 6 LKDLLAPWYDAI-----------PDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPA 54 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI GA A++ F T++ P++ + + LS A R Y + ++ V Sbjct: 55 AIEAGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGV 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V+ V Q G + +G T TT S + + + L+ + Sbjct: 115 TGTNGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQ 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG THV++E SSHGL Q R+ + A FTNL RDH+DYH T +AY AK+RLF Sbjct: 175 QGATHVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTHYGS 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISV 295 S ADD + A + +QG+ + L V + +T Sbjct: 235 PVSVIN--ADDPVGMRWLGSMPEAVAVSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDS 292 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +F PL GEF V N LV+ +A+G + A +L +L V GR E + Sbjct: 293 SWGEGEFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVFHRPDKP 352 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++LE L +R G++ +FGCGGDRD GKRP+M IA LADI I+ Sbjct: 353 MC-VVDYAHTPDALEKALHALRRHCDGKLWCIFGCGGDRDIGKRPMMADIAEKLADIVIL 411 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPRSE P+ I A+++ G+ I +R +A A+E ++QDV+++AGKGHE Sbjct: 412 TDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVILIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 ++ +G D D +R +L Sbjct: 472 QVLASGTVHY-SDRDTVRRLLE 492 >gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] Length = 500 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 146/491 (29%), Positives = 230/491 (46%), Gaps = 35/491 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAI-------VGNKEDGHLFIPQAIAQGAEAIVV 73 QW ++ + S DSR ++ G IF+A+ F A+A GA A++ Sbjct: 13 IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVIS 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSV 129 + + + V + R+ + + R + P I+AVTGT+GK+++ Sbjct: 69 ETELGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTI 118 Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + ++ +G T + TT + L AL + QG T S+E Sbjct: 119 SRLIAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLE 178 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ K + + Sbjct: 179 ASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDD 238 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 A + + A ++L+ ++ + + + F PL Sbjct: 239 AHADLMIESAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPL 298 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N + A G D ++ + KL PGR + + + R VDYAHT Sbjct: 299 LGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTP 356 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE Sbjct: 357 DALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPE 416 Query: 427 KIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +I A++ GI E +R EAI+ E D++V+AGKGHE + NG + Sbjct: 417 QIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHW 475 Query: 483 SVDCDIIREIL 493 D +R + Sbjct: 476 FDDVVEVRSAI 486 >gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] Length = 491 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 148/500 (29%), Positives = 223/500 (44%), Gaps = 31/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L + +I + DSR + IF I G DGH ++ Sbjct: 1 MKLSALF---------------DNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYV 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 AI GA +V S + +N + V + L+ A+ YG + ++ Sbjct: 46 NAAIKNGAVCVVHSEDIKRNN------ANVVYIKVRDVTAALNQVAACFYGYPSKKMVVY 99 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKSS+A ++ + + + LTTP + L + L ++ Sbjct: 100 GVTGTNGKSSIACMIRNLLNPVYACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMA 159 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ ++E SS GL+QHR D + + FTNL DH+DYH T + YF AK RLF++ L Sbjct: 160 QAGMKACALEISSIGLEQHRTDSVDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQ-L 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AI DD + ++ + K + +K T+ +G Sbjct: 219 KPDGTAITNKDDPHGMAIVADCPARVVTYGVLEKADYE--AKDIQLNADKTIFTLVHDGS 276 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ L F +YN L G+ +LE L + + GR E + + I Sbjct: 277 EYPVQTNLVAMFNLYNLLAVIAALHEGGLPIEQILEQLNTIPQIEGRMERI-EEGQPFNI 335 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT + LE I K IT RII VFG G RD KRP+ G++A D+ I+T Sbjct: 336 IVDFAHTPDGLEQIFKFASAITPKEKRIISVFGSAGKRDTKKRPVFGQLADKYCDLIILT 395 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+PR EDP +I EI GI I +R +AIR A+E+ N D +++ GKG ET Sbjct: 396 EDDPRDEDPIQIAEEIAAGIQKTNRIIIESRYDAIRQAVEVANVGDTILILGKGDETFIY 455 Query: 475 VTNGEKKMSVDCDIIREILG 494 G + D +R+ L Sbjct: 456 REFGREPWMSDPAAVRDALR 475 >gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] Length = 499 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 147/488 (30%), Positives = 228/488 (46%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ + S DSR +Q+G IF+A+ K F A+A GA AI+ + Sbjct: 13 INAQWSQQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132 + + V + R+ + + R P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCPDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 VAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK LF K + + + A Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFNSLKVAVINLDDEHA 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A ++L+ ++ + + F PL G Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G D ++ + KL PGR + + R VDYAHT ++L Sbjct: 301 FNVENLIAALIAAEQAGFDLDALVAFVPKLIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ + D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 ++ + Sbjct: 478 VVEVQSAI 485 >gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] Length = 492 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 219/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +I AIA GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266 TNL RDH+DYH T +AY ++ AII DD Y E++ K+ + Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCSDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 I + A + + + L G F N L A G Sbjct: 261 YSYGFSGNADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGCIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPFDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAVPTPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D ++ + L Sbjct: 440 DRAAAIRYAVERATANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488 >gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] Length = 511 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 236/503 (46%), Gaps = 22/503 (4%) Query: 10 DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ I P ++ IN +S +S+ +Q G +F+ + G DG F +AI GA Sbjct: 5 KLHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 EA ++ A + S I +++ DN + + + + + VTGT+GK Sbjct: 65 EAAIIGPAAKQKIGS--IDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ ++ + ++ G + G + F++ TT L K L+ Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--P 243 +E SSH + Q R+ G + A FTNL +DH+DYH ++YF K +LF E Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGI 242 Query: 244 AIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +++ DD + ++ S F + N + Sbjct: 243 SVLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKE 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-- 356 PL GEF + NA+ A + + + + + PGR E + ++ Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSR 362 Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD GKRP+MG IA + +D Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQL 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++AGKGHE Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I+ + + D I ++L Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504 >gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila psittaci RD1] gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] Length = 483 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 231/502 (46%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++S ++ ++ DSR++ G IF+A G DG+ F Sbjct: 1 MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI GA A+ S I S+ P L + A++ YG + ++ Sbjct: 54 HLAIENGAIAVASSIYNPFLPVVQIISSDLPQLE--------ADLAAKYYGHPSQKLCVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ ++ + + IG I + + TTP L K L+ + Sbjct: 106 GITGTNGKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ +E SS GL +RL + G TN+ DH+D+H + + Y AK++LF L Sbjct: 166 VKSNLSAAVMEVSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFSML 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + + Q + + +G Sbjct: 226 PSSGLAVVNNDLHYAAQFIEA---TQAQPITYGIEQHADYRASNLRFSPFGTDFDLLYKG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F PL G+ +YN L A + G D ++ + + GR E S Sbjct: 283 ETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGRLE--PVFSGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ + K ++ + GR+IVVFGCGGDRDQ KR IM ++ A+ Sbjct: 341 PIYIDYAHTPDALDNVCKTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKYG-FAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR EDPE I EI G F + +R +AI A+ + + +D+++VAGKGHET Sbjct: 400 VTTDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I + D +I+ E+L Sbjct: 460 QIFKHQTIA-FDDKEIVLEVLS 480 >gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Acinetobacter calcoaceticus PHEA-2] Length = 499 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 144/488 (29%), Positives = 227/488 (46%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 +W ++ S DSR + +G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAKWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 VAELISFQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK LF K + + + A Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAIINLDDEHA 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A ++L+ ++ + + F PL G Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G D ++ + +L PGR + + R VDYAHT ++L Sbjct: 301 FNVENLVAALIATEQAGFDLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ + D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 +R + Sbjct: 478 VVEVRSAI 485 >gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] Length = 487 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 147/500 (29%), Positives = 233/500 (46%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++ + + EL+ + ++++V DSR AG +FV + G D H FI Sbjct: 1 MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P I +GA+ +V A T+ +L V N R LSL ++ +G + + Sbjct: 54 PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ I + +G + IG I S TTP L + + + Sbjct: 107 GVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++ +E SS HR+DGI F N+ DHI + A F + + L Sbjct: 167 VEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 L ++ DD + +E+++ A K H+ + +E Sbjct: 225 LQNSRVCLVNRDDGHYREIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + +PG F VYNA+ AAG+C +G+ V LE + V GR E V S Sbjct: 285 DYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVD-GRMEIV-YKSAKC 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH + S+E +L +R R++VVFGCGG+R + +R MG+I LAD++I+T Sbjct: 343 TVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DN R E I A+I G+ FIE +R EAI ++ + D++ + GKGHE Sbjct: 403 ADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQEGDIIAIIGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREI 492 + G + +D +++E Sbjct: 463 QEIE-GVRHPFLDRTVVQEA 481 >gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] Length = 486 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 148/496 (29%), Positives = 235/496 (47%), Gaps = 27/496 (5%) Query: 9 KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL I + + ++ + SDSR AG +F+A+ G + D H FI Q I +G Sbjct: 2 KTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 IV + + + +LVV N+ L A Y ++ VTGT+G Sbjct: 62 CRVIVAERVIEVPE-------HVTVLVVPNSALALGELAHAFYDYPSRSLELVGVTGTNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + + + G + + I + TTP I L L+ + QG +H Sbjct: 115 KTTTTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSH 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSH + QHR+ G+ G+FTN+ DH+DYH T + Y A + F + L K++ A Sbjct: 175 CFMEVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEY-IAAKKTFFDELKKDAFA 233 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ ADD +++ + + + + + + Sbjct: 234 LVNADDKNGMVMVQNTKAKVSTFGLKTHADFKAKVLENSFSG------LLLTINGIELWT 287 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G+F YN G+ +G DS VL L KL V GRF+F + + VDYAH Sbjct: 288 RLIGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSET-DITAVVDYAH 346 Query: 365 TSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++LE +LK I I + I V GCGGDRD KRP M +IA +L++ I+T DNPR+ Sbjct: 347 TPDALENVLKTIENIRTRNEQVITVVGCGGDRDALKRPEMARIACELSNKVILTSDNPRT 406 Query: 423 EDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EDP +I ++ G+ + +R +AI+TA+ + +D++++AGKGHE + N Sbjct: 407 EDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKGHEKYQDI-N 465 Query: 478 GEKKMSVDCDIIREIL 493 G K D D+++ Sbjct: 466 GVKHPFDDFDVVKNYF 481 >gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 219/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP AIA GA + + P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFE---WNPEWEVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE + G K D ++ + L Sbjct: 440 DRATAIRYAVERAASSDIILIAGKGHENYQDMQ-GVKHHFSDFEVAEKAL 488 >gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] Length = 492 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP AIA GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGVELAGRLKKDCPDLTV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I + L Sbjct: 440 DRAAAIRYAVERAASSDIILIAGKGHENYQDVQ-GVKHHFSDFEIAEKAL 488 >gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] Length = 487 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 235/475 (49%), Gaps = 16/475 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + V++DSR + G +F+A G DG +I QA+A GA A++ S QDF Sbjct: 8 NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDS----QDFVWNA 63 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 L V + ++ A+ Y ++ VTGT+GK+SV+ ++ Q Q G + Sbjct: 64 AIKVSNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKT 123 Query: 145 FQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG + + + TTP I L K L+ ++QG V +E SSHGLDQ R+ Sbjct: 124 AVIGTIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRV 183 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + I+ FTNL RDH+DYH T AY A + P AI+ ADD + K++ + Sbjct: 184 NAIEFDFAVFTNLTRDHLDYHVTMDAY--ASAKQKLFDWPSLRTAIVNADDDFGKKMAES 241 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +L+ G + ++ + + +S + G F YN L Sbjct: 242 LRVNNKSLLTYGLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVL 301 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A + + + ++ V GR + G N + + VDYAHT ++LE +L ++R Sbjct: 302 ATLLARQVPLNEAIAAIAQIKPVAGRMQQFGGNDKPL-VVVDYAHTPDALENVLVSLREQ 360 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 T G+++ VFGCGGDRD GKRP+MG IA A +VT DNPRSE+P +I +++G+ Sbjct: 361 TQGKLVCVFGCGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHVVNGMTVL 420 Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI+ AI+ NK DV+++AGKGHE V G + D + + L Sbjct: 421 PSVAPDRAIAIQQAIKFANKDDVVLLAGKGHEDYQEVG-GVRAPFSDIAVAQAAL 474 >gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] Length = 493 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 138/500 (27%), Positives = 229/500 (45%), Gaps = 26/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++D++ + +N L + E + N +SS+S+ IQ +F+ G D H + Sbjct: 1 MKIKDILRE-----LNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +GA VV P + V ++R S+ AS Y K E ++ Sbjct: 56 DDLYKEGANVFVVEREIR----------KYPYIQVVDSRIAESIIASMFYSKPYEKLITF 105 Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 TGT+GK++ I G+ G + I + TTPS I + + + Sbjct: 106 GVTGTNGKTTSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKT 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH L Q+R++ I+ TN+ RDH+D+H+T + Y AK + L Sbjct: 166 LENGGKYYGMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILNLL 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P + + + +K + V + ++ + + Sbjct: 226 KPNGIAVVNHEL----LQEVKNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTPY 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + L GE+ +N + IG D V+ + V GRFE + + G Sbjct: 282 GEKKVASQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I VD+AHT ++LE ++ ++R +T GR+I VFG GG D GKRP+MG++ +DI+I+T Sbjct: 342 EIVVDFAHTPDALEKVILSLRKLTKGRLITVFGAGGQSDIGKRPMMGEVVSKYSDISIIT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDP KI ++ G+ + +R EAI TAI + N+ DV+++AG+GHE Sbjct: 402 TDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVILIAGRGHEPYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + K D D+ +I+ Sbjct: 462 VFDENHKVPFKDRDVAIDII 481 >gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] Length = 480 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 149/494 (30%), Positives = 237/494 (47%), Gaps = 26/494 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++DL+ + E ++ ++S D+R I+ IFVA G D H I Sbjct: 1 MKVKDLLKGV------EYFCKDKSLLEYEVADISFDNRDIKENSIFVAYKGVSYDTHNDI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119 + I ++ + P +VV N R+ LS+ + + + N + Sbjct: 55 NKLIN----------DSRIKVLVTEKEFDFPTIVVKNGRRALSIISKNFFIKNYEPNYIG 104 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A + I + +G + + G + I + TTPS K L Sbjct: 105 VTGTNGKTTTAYLINHIVEFTGYKTARFGTINYKIDKELYPSTTTTPSTYEFYKMLGVAE 164 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V +E SSH LDQ R+ GI +TNL DH+DYH+ YFN+K +LF E L Sbjct: 165 KANCEFVVMEVSSHALDQDRVYGINFNYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL 224 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 DD Y K+++ + S ++ +K + +++ G+ Sbjct: 225 NGCGIVN--IDDEYGKKLLYLIKDNEILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGE 282 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F L G+ +YN + A +GID + ++ VPGR E + N I Sbjct: 283 KIHFETSLVGKHNIYNLMAAILTAHHLGIDHDRITRAIKTFSNVPGRLEKLIYN--NIYI 340 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 ++DYAHT ++LE +L ++R RII +FGCGGDRD+ KRP M K+A +D+ +VT D Sbjct: 341 FIDYAHTDDALENVLSSLRPFRKRRIITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSD 400 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+EDPEKI I+ G + + +R EAI+ A++ +D++++AGKGHE ++ Sbjct: 401 NPRNEDPEKIIDGILKGFGDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKGHEDYQLI 460 Query: 476 TNGEKKMSVDCDII 489 G K D + + Sbjct: 461 K-GVKYHFDDKEEV 473 >gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 503 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 155/475 (32%), Positives = 237/475 (49%), Gaps = 14/475 (2%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRS 88 + DSR+I G +FVA+ G+K DG L+I AI +GA A+++ S ++ + + Sbjct: 25 TGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHLN 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V+ ++LS A Y +++ VTGT+GK+++ + + Q G S Sbjct: 85 KIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSAV 144 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + TT S I K LS +T V++E SSHGL+Q+R+D + Sbjct: 145 MGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDKITFVAMEVSSHGLNQYRVDALYFK 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRAHNA 263 A FTNL DH+DYH Y +K RLF+EL ++ + + + Sbjct: 205 AAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEKYIINADDPVGCRWLYYLPQAIAVT 264 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R L ++GK+I KV + +T L GEF V N L+A G + Sbjct: 265 ITRNLPFFWKGKWICALKVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVSNLLLALGTLL 324 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382 +G +L++ +L V GR E + + VDYAHT ++LE +L +IR G Sbjct: 325 ILGYPLSLLVHTSSQLQPVAGRMEVFR-SHGYPTVIVDYAHTPDALEKVLISIRQFYYWG 383 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 ++ VFGCGGDRD KR +MG I AD I+T+DNPR+E+P+ I +I GI Sbjct: 384 QLWCVFGCGGDRDPSKRALMGCIVSRYADYIIITNDNPRTEEPQSIINDITRGITHRKKI 443 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 NR AI+TAI + +DV++++GKGHE I+ N + D DI+ L Sbjct: 444 IKIIQNRCCAIQTAILKASLEDVILISGKGHEKYQIIGNN-RIYHSDKDIVENFL 497 >gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] Length = 482 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 143/472 (30%), Positives = 227/472 (48%), Gaps = 19/472 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR G +FVA+ G+ DG FI A+A+GA +V + A + Sbjct: 18 LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAE------V 71 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + R+ L L A YG P ++ VTGT+GK++ + + +G + +G Sbjct: 72 VDCADPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLDHLFASAGKKTGVLGTV 131 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S +D +TTP + + L+ + + GV +E SSH LDQ+R+ G+ F Sbjct: 132 SYRWPGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHALDQNRVAGVGFGGAVF 191 Query: 210 TNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +NL +DH+DYH + YF AK L + P + D + Sbjct: 192 SNLTQDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTDNPWGARLAGMAPEAIGF 251 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +L+ + + EG++++F PL G + N L + + Sbjct: 252 GLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGNYNAENLLAVQAVALGF 311 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+D E VPGR E + N + ++VDYAHT ++L +L +R RI+ Sbjct: 312 GLDPEAFRC-FETFCGVPGRLERI-LNPQNLDVFVDYAHTPDALINVLNALRGAGFKRIV 369 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442 VFGCGG+RD+ KRP+MG+ L+D+A++T DNPR E+PE I A+++ G+ G E Sbjct: 370 TVFGCGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIMADVMPGLSGAAEVFAD 429 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R AI +E+L+ D L++AGKGHE+ + + K D +REILG Sbjct: 430 PDRRRAIEKGLELLHPGDALLIAGKGHESTQQIGD-VKHPFSDQQTVREILG 480 >gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] Length = 508 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 148/506 (29%), Positives = 243/506 (48%), Gaps = 18/506 (3%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK ++LI +++ S + +I + DSR I+ ++FVAI G K+DGH + Sbjct: 1 MKYFKELIKNYK---VSKESQLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKY 57 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 I AI A I+ + + + + V N R+ L+ +++L+ + + Sbjct: 58 IESAINNKASIIIYDNTADKEFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKI 117 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK++ ++ + + + + IG + I LTTP I L Sbjct: 118 NTIGITGTNGKTTTTYLLKSVLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIF 177 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231 +G++H+ +E+SS L +R D + FTN+ DH+DYH Q Y AK Sbjct: 178 DKSLKKGISHIVMESSSQALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLF 237 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L +E K+ AI+ D K++ G ++++ G K + KV ++++K Sbjct: 238 SLLKESSKKKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTE 297 Query: 292 TISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + G F + N+L +D ++ + K+ V GRFE V Sbjct: 298 YEFYAKGKLISKVKLSMLGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQV-EGRFEIV 356 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VDY+HT +SLE IL + + R+I VFGCGGDRD+ KRPIM +IA Sbjct: 357 TKEKHPFIVAVDYSHTPDSLENILVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKY 416 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ADIAI+T DN R+ED +I +I G + + +R EAI A++ + D++++AGK Sbjct: 417 ADIAILTTDNQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKEAKENDIIIIAGK 476 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET I + + D + RE L Sbjct: 477 GHETYQIFPD-KTIHFDDREEAREAL 501 >gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] Length = 498 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 144/491 (29%), Positives = 238/491 (48%), Gaps = 33/491 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVS 74 + +W + DSR +QAG IF+A+ K F A+ +GA A+V Sbjct: 11 ANLSAEWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKT--EQFAQIALDKGALAVVSE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL----YGKHPENILAVTGTSGKSSVA 130 + +L + +VV N R + + + P ILAVTGT+GK++++ Sbjct: 69 TELALANS----------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTIS 118 Query: 131 SFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V ++ G S +G T + + TT ++L AL + QG S+EA Sbjct: 119 RLVAELLMLQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL G ++ +++NL RDH+DYH T + Y A+ + P A+I D Sbjct: 179 SSHGLEQGRLAGSEIEIAAYSNLSRDHLDYHGTLEVY--AEAKSRLFQFPSLKVAVINLD 236 Query: 250 DAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D ++ +++ A N + Q +K + ++ ++ PL Sbjct: 237 DEHAGVMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQNPL 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N + + + G D A V+ +L PGR + + ++R VDYAHT Sbjct: 297 LGHFNIENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIRDDAR--LFVVDYAHTP 354 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L +L ++ ++ VFGCGGDRD+GKRP+M + AL+ AD+ ++T DNPR+E+PE Sbjct: 355 DALVQVLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQAALNGADVVLLTSDNPRTENPE 414 Query: 427 KIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +I A++ GI E +R EAI+ A++ D++V+AGKGHE + G + Sbjct: 415 QIFADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHENYQEIE-GVRHW 473 Query: 483 SVDCDIIREIL 493 D ++ + Sbjct: 474 FDDVVEVQSAI 484 >gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 503 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 156/505 (30%), Positives = 231/505 (45%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ L + + I + I + +DSR I+ G +FV + G DGH + Sbjct: 1 MILQSLTDRLILKKITGSTS-------ADITNLETDSREIRPGGVFVCVPGFHVDGHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QAI GA AIV S + N + V +TR+ L + A+ +G ++ Sbjct: 54 EQAIRNGAVAIVAERELS------GLPGNVTHITVPDTRRILPILANAFFGDPTRQLKLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V QI + + IG I + + TTP I L + + Sbjct: 108 GITGTNGKTTTTHMVDQILNDARRKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTI 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 S G + +E SSHGLD R+ G FTNL DH+D+HQT ++Y N +L Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + A++ ADDA S KR ++ Sbjct: 228 GNSNRDMQKKAVLNADDAASSYYAKRTSAQIITYGIQNQADV--RATQIHHSREGCVFHA 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 D + G +YNAL A C+ GI + LE+ V GRF+ + T Sbjct: 286 ETPWGSSDVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGR 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R + VDYAH + L+ L++ + ITSG++I V GC G+RD+ KRPIM IA +D Sbjct: 346 R-FGVVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIAASYSDYV 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + T DNP SEDPE+I AE++ G+ + +R EAI+ A+EM +D +++ G+G Sbjct: 405 LFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRG 464 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET V + D DI+ L Sbjct: 465 HET-RYVAGSRIESFSDEDIVMSSL 488 >gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] Length = 491 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 134/502 (26%), Positives = 215/502 (42%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ + E++ + ++ EV DSR + G +FV + G + D H FI Sbjct: 1 MKFKEWLKDLTYEVLQGS-------LDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + G + +VV L D ++V N R+ L+L ++ +G E ++ + Sbjct: 54 PEVVNAGVQILVVERKTELPD-------GVTAILVHNAREALALLSAARFGYPAEKMVTI 106 Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T K ++ + + G IG T I TTP L +A ++ Sbjct: 107 GVTGTKGKTTTTHMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++ +E SS HR+DGI G FTN+ DHI + + ++ Sbjct: 167 AEAGCEYMVMEVSSQAFKMHRVDGISFDYGLFTNISPDHIGP---DEHADFEEYLYYKSR 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + I D + + S+ + + + I V + + Sbjct: 224 IFSCCKVGIMNGDDEHWAEVVKDATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDI 283 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K +PG F V NAL A + +G+ + LE L+V GR E V +S Sbjct: 284 KGISQLSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNV-NGRMEIV-YSSE 341 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAH + S+E +L +R R++ VFGCGG+R + +R MG A LAD I Sbjct: 342 TCTVIVDYAHNAVSMESLLSTLRDYRPKRLVCVFGCGGNRSKDRRITMGDSAGRLADFTI 401 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DN R E E I A+I + FIE +R EAIR +I D++ + GKGHE Sbjct: 402 ITADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMIAIIGKGHE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 + NG + D + I + Sbjct: 462 NYQEM-NGVRYHFSDQEEILKA 482 >gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] Length = 491 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 165/501 (32%), Positives = 246/501 (49%), Gaps = 25/501 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D++ + + +I ++ D+R +Q G +F + G DGH F Sbjct: 1 MKLLDVMGS-----AETVPTLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFA 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P A+A+GA A+VV L P L V + R ++ A+ G + Sbjct: 56 PDAVARGAVALVVERPLGL---------GVPELRVASVRAAMARAAANFNGDPTARLQTV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A V+ + + +G + +G + + A++ + TT I L L + Sbjct: 107 GVTGTNGKTTTAFLVRGLLEAAGRQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++E SSH L+ HR D ++ A FTNL +DH+D+H T + YF AK RLFE Sbjct: 167 LDGGDVAAAIEVSSHALELHRADAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFET- 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296 A++ DD Y + + + G ++++ ++ T Sbjct: 226 --GPGVAVVNVDDPYGRRLAEELRADGAALVTIALDHDADYRATELTTGLTGSAFTAQTP 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 PLPG F V N L A A+G+ + L + VPGRFE V +G Sbjct: 284 QGPIALRTPLPGRFNVQNVLGAVAAVRALGVPLEQIAAALPQAGRVPGRFEPV-DEGQGF 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SL+ +L+ R +T +++ VFGCGGDRD+ KRP+MG IA LAD A VT Sbjct: 343 AVLVDYAHTPDSLDNVLQAARGLTERQVLTVFGCGGDRDRTKRPLMGGIAARLADEAYVT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPRSEDPE+I +++ G P + +R +AI A+ + DVLV+AGKGHE Sbjct: 403 SDNPRSEDPEQILRDVVEGTGTGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQ 462 Query: 474 IVTNGEKKMSVDCDIIREILG 494 GEK D + RE L Sbjct: 463 EFAGGEKLPFDDVTVAREALR 483 >gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] Length = 952 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 240/484 (49%), Gaps = 27/484 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR I+ G +FVA G DG L+I +A+A GA A++ + S D +TP Sbjct: 30 HLKLDSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGS--DALQAAAGSTP 87 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V R L A YG+ ++AVTGT+GK+S ++ R+ IG Sbjct: 88 MLPVTGLRALLGELADTWYGRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147 Query: 150 TSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + LTTP + + + L+ + G V++EASS G++Q RLDG+++ Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAQAVAMEASSIGIEQGRLDGVRVALA 207 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----AHNA 263 +FTNL RDH+DYH T + Y AK RLF P + A++ ADD + ++ Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLFNW--PGLTAAVVNADDEAGRRLLATLPTGMAAM 265 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + + + A Q T+ + + L G V N L+ AG+ Sbjct: 266 GYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLY 325 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKN 375 +G+ A + L V GR + V + RG + VDYAHT ++L L Sbjct: 326 KLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVDYAHTPDALSRALTA 385 Query: 376 IRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R + SGR+I +FGCGG+RD GKRP MG+IA LAD +V+ DNPR+E P+ I +I Sbjct: 386 LRAVAVARSGRLICLFGCGGERDPGKRPEMGRIAAQLADHVVVSSDNPRTESPQDIIDQI 445 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + GIP + +R AI I + DV+++AGKGHET + G+K D + Sbjct: 446 LAGIPPAANVDVQVDRARAIMQTIWSASPDDVVLLAGKGHETYQDIG-GDKLPFDDREWA 504 Query: 490 REIL 493 R L Sbjct: 505 RLAL 508 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 150/423 (35%), Gaps = 32/423 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55 L+ E + + + +R+ ++ VS+D+R I G +FVA+VG D Sbjct: 479 LLAGKGHETYQDIGGDKLPFDDREWARLALLLPQVSGVSTDTRRIGPGELFVALVGENFD 538 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H ++ QA +G A + A S P LV+ +TR L + + Sbjct: 539 AHNYLDQAEGRG--------ACAAVVAHAVSDSKLPQLVLGDTRIALMRIGAAWRAQFTL 590 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++AVTG++GK++ + + S ++ +++ P+ L + + Sbjct: 591 PVVAVTGSNGKTTTKEMISAMLAEWQGESGRLATAGNLNNDI-------GVPLTLLRLRA 643 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + G TN R+H ++ T +A A Sbjct: 644 EHR---AAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQEFMHTVEAV--AHENGAA 698 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + +Y D + + G ++ +++ A + + + Sbjct: 699 IAALPDDGVAVYPGDEPYCAIWDALAEPRRVLRFGLQPGLDVYAEQILADVDSTRCRVVT 758 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D P+PG + NAL A IA G+ + L + V GR + + Sbjct: 759 PVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRALSRFAPVAGRMQHKKMSDGT 818 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413 I Y +S+ + + + I R++V+ G GD +G A + A Sbjct: 819 LLIDDTYNANPDSVRVAIDVLARIAGTRVLVLGDMGEIGDNGPALHAEVGNYAREQGLDA 878 Query: 414 IVT 416 ++T Sbjct: 879 LIT 881 >gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] Length = 500 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 168/503 (33%), Positives = 245/503 (48%), Gaps = 37/503 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 LQDLI + + + P I ++ DSR ++ G++FVAI G + DGH FI Sbjct: 3 NLQDLIAVLPDKTVTGPAGRP-------IQGITYDSRRVEPGFLFVAIRGLRYDGHSFI- 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 V A ++ P + V ++R L L AS YG + ++ Sbjct: 55 -------AEAVARGAAAVVGERPLALEGVPYVQVPSSRLALGLLASAFYGHPSASLVMVG 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ + + G + IG + I+ + TTP L K L+ + Sbjct: 108 VTGTNGKTTTTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMR 167 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G+TH +E SSH L R+ G G FTNL +DH+D+H + + Y AK RLF L Sbjct: 168 DEGMTHAVMEVSSHALALQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLG 227 Query: 239 PKESP---------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 E P A+I ADD + + + R++ ++V Sbjct: 228 RNEIPGTTKPGPKAAVINADDPWGEFMAARSNAPVVTYGLNRPADIT--ARQVEVEPGGI 285 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + L G F VYNAL AAG +A+G+D A V LE L VPGR E + Sbjct: 286 RFILVSPKGEAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERI 345 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + VDYAHT + L+ +L+++R + GR+I VFGCGGDRD+GKRP MG I+ Sbjct: 346 DRGQ-PFAVIVDYAHTPDGLDNVLRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISAR 404 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD ++T DNPRSEDPE I +I G+ + +R AIR A+E+ DV+V Sbjct: 405 LADYTVLTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVV 464 Query: 464 VAGKGHETVHIVTNGEKKMSVDC 486 +AGKGHE I + D Sbjct: 465 IAGKGHEDYQIFAD-RTIHFDDR 486 >gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella woodyi ATCC 51908] gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC 51908] Length = 502 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 152/504 (30%), Positives = 240/504 (47%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ F ++ +N++S DSR + G +FVA+ G++ DG +I Sbjct: 1 MLLKDLLAPWFHYSGSES-----------VNKLSLDSREVDQGDLFVAVPGHQVDGRDYI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A GA+ +V + + SN+ + + LS A++ Y E ++ Sbjct: 50 DVAAKNGAQVSLVHTDNPEMHGKV-LTSNSTQIFFFQLSRQLSALAAQAYPLPVERLKLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+ + Q+ G +G D+ TT PI + L+ Sbjct: 109 GVTGTNGKTSITQLMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++E SSHGL Q R+D + FTNL RDH+DYH T QAY AK RLF+ Sbjct: 169 NELGADLCAMEVSSHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFKFP 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQV 291 K + DD K+ + ++ +A S+ Q I+ K + + Sbjct: 229 SLKSGVINL--DDDLGKQWLAQSDSAKLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRA 286 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + PL G F + N L A +G D +L + KL+ V GR E T Sbjct: 287 KLVWPEGCGNIDSPLLGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTT 346 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDYAHT +++E LK +R G + +FGCGGDRD+GKRP+M + A AD Sbjct: 347 EN-GITLVVDYAHTPDAIEQALKALRGHCEGELWCLFGCGGDRDKGKRPLMAQSAEAYAD 405 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +VT DN RSE P++I +++ G+ + + +R AIR + D++++AGKG Sbjct: 406 RIMVTSDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492 HET G ++ + + R + Sbjct: 466 HETYQE-AGGVRRDYDERALARSL 488 >gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] Length = 495 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 206/502 (41%), Gaps = 20/502 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ + + S + + +I +V +D+R I G +F+ I G DGH Sbjct: 1 MILSKLLEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A + A AIVV L ++ V+NTR ++ ++ + + + Sbjct: 61 MEAANKKAAAIVVEHDVELPG-----DCKIAVIRVENTRYAMAFISAAYFDHPARKLKTI 115 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG I TTP L + ++ + Sbjct: 116 GITGTKGKTTTTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARM 175 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR G G FTN+ DHI + + L Sbjct: 176 VEAGCDSVVMEVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGP---NEHKDFEDYMHCKGL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K+ I D + + H G + + Sbjct: 233 LFKQCRIGICNGDDIHTDDILEGHTCKAYTYGFGEGLDLRAINLAYIRKPGELGVFFDTE 292 Query: 298 K--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + PG+F VYNAL A + +G + L+ V GR E V + Sbjct: 293 GLINMHAEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAKV-KGRIEMVKVSDE- 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + +L+ +L +R R+I VFGCGG+R + +R MG+++ +D I+ Sbjct: 351 FTLMIDYAHNAMALKSLLTTLRDYHPNRLISVFGCGGNRSKLRRFEMGEVSGKYSDFTII 410 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+PE I +I G+ +I+ +R EAIR AI+ + D++V+AGKGHE Sbjct: 411 TSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGKGHED 470 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K + II+EIL Sbjct: 471 YQEIK-GVKYPMDERVIIQEIL 491 >gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] Length = 500 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 153/496 (30%), Positives = 244/496 (49%), Gaps = 25/496 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L K+ + +S + + N+ S + +F I G K DGH F Sbjct: 8 LKALKEKNLLKEARNISNPSLVLWDV-FNK----SHQCEENSLFCCIPGEKHDGHSFASD 62 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ +GA ++ A LQ P ++V+N+R + A+ +YG + + + Sbjct: 63 AVQRGAAVLLCQHALPLQ---------VPQIIVENSRWAMGFAAAAVYGFPSKQVSLYGI 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ + ++ I + +G +G Q+ TTP + + ++ + Sbjct: 114 TGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKEQEADRTTPESCDVQRLIARMKR 173 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G T V +EASSHG +Q RL+G FTNL +H+DYH+ + YF AK +LFEE + Sbjct: 174 NGCTSVIMEASSHGANQGRLNGCLFQGMVFTNLTPEHLDYHKDMEHYFEAKKKLFEEYVS 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + +DD Y + +++ + + L+ ++ + + D Sbjct: 234 ENWCGAVNSDDEYGRRLLRIYGKKCLSFGLDSTRHHDVQLQNFYMTLSELSMKVQFFNSD 293 Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D PL G F +YNAL A +C +G+ ++ + LE + VPGR E + Sbjct: 294 PIDITLPLTGRFNIYNALGAMAICYKMGVAPLVIKKGLESMPQVPGRLEKYFFENE-VCG 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE +L +R + G+II VFG GG+R Q RP++G++A LADI IVT D Sbjct: 353 VVDYAHTPDALENVLSALREVCHGKIISVFGHGGERYQANRPLLGQVAARLADIIIVTMD 412 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 N RSEDP KI I GI +E +R EA+RTA+ M DV+VV GKG E Sbjct: 413 NSRSEDPAKIAEAIEQGIASVVEAPPHYRILDRNEAVRTALSMAKPGDVVVVTGKGPERF 472 Query: 473 HIVTNGEKKMSVDCDI 488 ++ N + + + I Sbjct: 473 IVMDNNKIEYNDSHAI 488 >gi|163854998|ref|YP_001629296.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella petrii DSM 12804] gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bordetella petrii] Length = 943 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 160/480 (33%), Positives = 241/480 (50%), Gaps = 26/480 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR + AG +FVA G DG FI QA+A+GA A++ + + ++ Sbjct: 27 HLRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPA-----PGDVATDAR 81 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V + R+ L A YG+ +++AVTGT+GK+S +V Q +G IG Sbjct: 82 VRAVPDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGT 141 Query: 150 TSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + LTTP + + + L+ + + G V++EASS G++Q RLDG+++ Sbjct: 142 LGAMLPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVA 201 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + + Y AK RLF+ P + A+I ADDA + +++ Sbjct: 202 GFTNLTRDHLDYHGSMERYEQAKARLFQW--PGLAAAVINADDAAGERLLRTLPRGLALG 259 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + +++ A + Q T++ + + L G V N L+ AG+ +G Sbjct: 260 YTQQDVPTAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGW 319 Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A + L V GR + V G RG + VDY+HT +SL L +R + Sbjct: 320 PLAQLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPV 379 Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR++ +FGCGG+RD GKRP MG+IA DLAD V+ DNPR EDP I A+I+ GI Sbjct: 380 ADARGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGI 439 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AI I + DV+++AGKGHET G K D + R L Sbjct: 440 PRGARLQVEADRARAIMQTIWAADPDDVVLLAGKGHETYQD-AGGVKLPFDDREWARLAL 498 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 78/438 (17%), Positives = 157/438 (35%), Gaps = 33/438 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I A +F+A+ G + DGH ++ QA + GA A +V+ ++ P Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVD--------GASLPQ 557 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +TR+ L + ++ ++ V G++GK++ + I + ++ Sbjct: 558 LVLGDTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGN 617 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ P+ L + + + + + G TN Sbjct: 618 FNNDI-------GVPLTLLRLRAQHR---AAVIELGMNHPGEIAVLAALAAPSVALVTNA 667 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H ++ + +A A+ E ++ D + + A + Sbjct: 668 QREHQEFMHSVEAV--AQENGASIEALPEDGVAVFPGDDPHCGIWEAQAGARRVLRFGLQ 725 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ +++ A + + + D + P+ G + NAL A +A G A Sbjct: 726 PGLDVYAEQIDATPHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGA 785 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L V GR + + I Y +S+ + + + + R +V+ G Sbjct: 786 VRALSAFSAVAGRMQRQTLDDGTILIDDTYNANPDSVRAAVDVLARLPAPRALVLGDMGE 845 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GD +G+ A + T E R PG + + E I Sbjct: 846 VGDNGPAMHREVGEYARQHGIDTLYTLG-------EASRDSAAAFGPGALACASVDE-IV 897 Query: 451 TAIEMLNKQDVLVVAGKG 468 A+ +LV KG Sbjct: 898 AALRGARPASLLV---KG 912 >gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] Length = 490 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 187/499 (37%), Positives = 265/499 (53%), Gaps = 16/499 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + ++ P R I+ +++DSR G IF A+ G DG +I Sbjct: 1 MLLPELLRRAGLDIA-----LPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA AQGA A+++ + D T + LV + R L+ A L + P +I A+ Sbjct: 56 PQAHAQGAAAVLLEA-----DPGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYL 177 TGT+GK+S A F++QI L + IG LTTP + L L + Sbjct: 111 TGTNGKTSTAEFLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV HV++EASSHGL+Q RLDG+ A F+NL RDH+DYH T + Y AK+RLF+ + Sbjct: 171 AQAGVEHVAIEASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTV 230 Query: 238 LPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LP+ A AD DA + A G + + G +G + L Q + + Sbjct: 231 LPEGGIAAFNADMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMT 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + PL G FQV N L+A + + + L +LH V GR E G Sbjct: 291 PAGAREMEVPLVGRFQVDNMLLACAMAGRDEGAADHAVSLLPRLHGVRGRMERAAVLDSG 350 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 YVDYAHT +++E +L ++R T GR+++V G GGDRD+GKRP+MG+IA LAD IV Sbjct: 351 AAAYVDYAHTPDAIERLLCSLRPHTPGRLVIVMGAGGDRDRGKRPVMGEIATRLADRVIV 410 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPR+E P IRA I+ PG IE G+R +AI + +L DV+VVAGKGHE + Sbjct: 411 TDDNPRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKGHEQGQTI 470 Query: 476 TNGEKKMSVDCDIIREILG 494 + + D +IR++LG Sbjct: 471 GH-DVLPFDDATVIRDLLG 488 >gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] Length = 488 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 142/505 (28%), Positives = 233/505 (46%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E++ E ++ +++DSR +++G +FV I G DGH ++ Sbjct: 1 MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A + + ++ +NTR L+L ++ +G E ++ Sbjct: 54 SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ I + G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SS GL HR GI G FTNLG+DHI + + + + Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L ++ I D E + R + + ++ V Sbjct: 224 LFQQCKLGIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG+F VYN+L A +C G+ S + E L+ HV GR E + + Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ VFGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 + G K + +I E+L I Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485 >gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 495 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 220/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR + G FVAI G G F+ QA A GA A++ + Sbjct: 19 DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ ++ VTGT+GK+S + Q G + Sbjct: 74 PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + + Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGFGRTLFASRDPVLR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN ++++G+ PL G F V N L AG Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485 >gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes 266] Length = 529 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 153/493 (31%), Positives = 231/493 (46%), Gaps = 23/493 (4%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ I ++ DSR ++ G ++V + G G F A+ GA A++ Sbjct: 29 DLVASFDSCRANDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVL 88 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVA 130 + + + PI+VVD+ R +++ A++++G+ + +TGT+GK++ A Sbjct: 89 TDEDGA----TLAAEAGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTA 144 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVS 186 V+ + +G IG + +TTP L + ++ +G + V Sbjct: 145 FLVEAGLRAAGHHVGTIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVV 204 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+DG +FTNLGRDH+D+H T YFNAK RLF L + Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN- 263 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD +++++R G + ++ + A +S + Sbjct: 264 -VDDPRGRQLVERMQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELS 322 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPGEF V NA +A + A G+ V + L V PGR E V VD+AHT Sbjct: 323 LPGEFNVRNAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHT 381 Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++ L R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+ED Sbjct: 382 PQAIASALDAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTED 441 Query: 425 PEKIRAEIIHGI-----PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 P IRA ++ G G I R EAI A+ M DV+ V GKGHET + + Sbjct: 442 PAVIRAAVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS 501 Query: 478 GEKKMSVDCDIIR 490 E D ++IR Sbjct: 502 -EVLPFDDREVIR 513 >gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] Length = 487 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 164/503 (32%), Positives = 255/503 (50%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ +L+ + + +++DSR +++G++FVA+ G + DGH + Sbjct: 1 MKLAALLAGHPHDLL-------QGDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHL 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ QGA A +VS+ + + S I V++T SL ASRL+G+ + + Sbjct: 54 EQAVEQGAVAALVST------TAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVV 107 Query: 119 AVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKA 173 ++TGT+GK+S A+ ++ + S IG TTP + L Sbjct: 108 SITGTNGKTSTAAMLESVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPI 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L Y++ QG V +EASS L QHRLD G FTNL DH+D H T AY AK+ L Sbjct: 168 LRYMADQGAGTVVMEASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + A++ DD S+E+++R A + + + + + Sbjct: 228 FSGMSSD---AVVNTDDPVSQEILERMPRATTFGM---DKTADFTARAFEVSATGTRFLL 281 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G+++ P+PG F V NAL A +C +G ++ L LE L +PGR E + Sbjct: 282 VHDGQEYPAHLPIPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRAD 341 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G I VDYAH+++SLE L+ +R ++SGR++ VFGCGGDRD KR MG +A L+D Sbjct: 342 -GTSIVVDYAHSADSLEKTLRTLREVSSGRLLTVFGCGGDRDASKRIPMGSLAGHLSDHV 400 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 ++T DNPR+EDPE I + G+ + +R AI A+ + D ++VAGKG Sbjct: 401 VITSDNPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAGKGA 460 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET ++ D ++RE+ Sbjct: 461 ETYQLIGEAA-LPFEDMAVVREL 482 >gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii SDF] gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii] Length = 499 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 151/486 (31%), Positives = 234/486 (48%), Gaps = 34/486 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ + S DSR ++ G IF+A+ K F A+A GA A++ + Sbjct: 13 IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DDA Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238 Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ++ ++K A N + S+ ++ + + + F PL Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N + A G D ++ + KL PGR + + + R VDYAHT + Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+ Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A++ GI E +R EAI+ E D++V+AGKGHE + NG + Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475 Query: 484 VDCDII 489 D + Sbjct: 476 DDVVEV 481 >gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] Length = 488 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 141/505 (27%), Positives = 232/505 (45%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E++ E ++ +++DSR +++G +FV I G DGH ++ Sbjct: 1 MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A + + ++ +NTR L+L ++ +G E ++ Sbjct: 54 SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ I + G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SS GL HR GI G FTNLG+DHI + + + + Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L ++ I D + R + + ++ V Sbjct: 224 LFQQCKLGIANIDDPYYADIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG+F VYN+L A +C G+ S + E L+ HV GR E + + Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ VFGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 + G K + +I E+L I Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485 >gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] Length = 563 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 157/543 (28%), Positives = 237/543 (43%), Gaps = 65/543 (11%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + +LS + ++ S DSR + G ++ A+ G G F A+ GA A++ Sbjct: 17 ALAELSGAAGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLT 76 Query: 74 SSAYSLQDFSATIRSN-----------------------TPILVVDNTRKFLSLFASRLY 110 +A + ++ P+LVVD+ R L A+ +Y Sbjct: 77 DAAGAAVIRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIY 136 Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSP 167 G ++ +TGT+GK++ A ++ + G S+ IG T D+ TTP Sbjct: 137 GDPGADLTMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEA 196 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L+ + +G +E SSH LDQHR+DG+ FTNL +DH+DYH + + YF Sbjct: 197 TDVHALLAVMRERGADTCVMEVSSHALDQHRVDGVVYDVALFTNLSQDHLDYHGSMEDYF 256 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK RLF DD + + ++ RA + ++ A + Sbjct: 257 AAKARLFTPERSLSGVV--CVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVD 314 Query: 288 K-----------------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + LPG+F V N +AA +++G + A Sbjct: 315 WSVVPRRGAAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLSLGHEPA 374 Query: 331 LVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V L VPGR E V + R VD+AHT +++++ L +R T GR+I V G Sbjct: 375 RVEAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDVALAALRPSTRGRLIAVLG 434 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--------E 441 GGDRD+GKR MG+ A ADI +VTDDNPRSEDP +IR ++ G + E Sbjct: 435 AGGDRDRGKREAMGRAAARHADIVVVTDDNPRSEDPAEIRRTVLAGARSAVTDGSAVARE 494 Query: 442 KGN---RIEAIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + R AI +AI M + D +VV GKGHE V NG K D + +R Sbjct: 495 IIDGGARSRAISSAIAMALRGSSGSDGADTVVVLGKGHEKGQEV-NGVKHPFDDREAVRT 553 Query: 492 ILG 494 L Sbjct: 554 ALR 556 >gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] Length = 503 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 237/486 (48%), Gaps = 17/486 (3%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + I ++ DSR + G +F+ + G + DG F P+A+ GA A+++ SA + Sbjct: 16 VPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIGSAAAAT 75 Query: 81 DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 + +LVV + ++ A+ + E I + VTGT+GK++ ++ + Sbjct: 76 LPPEQSDA---VLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTTTHLIEHLS 132 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S G + + TT L L+ + G ++E SSH LDQ Sbjct: 133 SACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAMEVSSHALDQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSK 254 HR+ G + FTNL +DH+DYH+T +YF AK RLF L + A ++ DD + K Sbjct: 193 HRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVVNIDDPWGK 252 Query: 255 EVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +R + R S G + + + + + + + F PL G F V Sbjct: 253 HLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQSPLLGRFNVM 312 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLE 370 N L A G+ + G+ +LE + VPGR E V + +G + VDYAHT + L Sbjct: 313 NLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVDYAHTPDGLS 372 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L R G++I VFGCGGDRD+GKR M IA +LAD +VT DNPR+EDP++I Sbjct: 373 SALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSDNPRTEDPQQILN 432 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +++ GIP +R EAI AI+ D++++AGKGHE I+ +K D + Sbjct: 433 DVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQILGT-QKVHFDDRE 491 Query: 488 IIREIL 493 + L Sbjct: 492 QALKAL 497 >gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 780 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 139/522 (26%), Positives = 252/522 (48%), Gaps = 40/522 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + + E +I + DSR + AG +FV VG + DGHL++ Sbjct: 243 MSLAELLDES-----KVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYL 297 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A +GA A+V S +++ +++V++T L ++ Y +N+ + Sbjct: 298 SEADKRGAVAVVASKEIDIEETLGCKA----LVIVEDTNAVLPALSAAFYKYPSKNMAVI 353 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 ++GT+GK++ A ++ + + GL + + ++ TTP + + ++ Sbjct: 354 GISGTNGKTTTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAK 413 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFE 235 + G V +EASSHGL R D + FTNL DH +H T++ Y +AK +LF Sbjct: 414 MLHNGTEAVVMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFA 473 Query: 236 ELLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ E I D + + + + ++ + +H K + QV + Sbjct: 474 RMVDPERHRKIVNIDDSNASFFIAQGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLV 533 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + L G +YN L A + IA+G ++ +E++ VPGR E + Sbjct: 534 NTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEE 592 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT + L ++L ++R + RII V GC G+ D+GKRP+M K+A D +++ Sbjct: 593 QAFGVIVDYAHTPDGLSILLDSVRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVT 652 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRT 451 ++T DNP++EDP I +++ G+ ++ + + R A+R Sbjct: 653 MLTSDNPKNEDPLDILDDMLAGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRC 712 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+ M + D++V+AGKGHET I + +K+ D + RE L Sbjct: 713 AVAMGEEGDMVVIAGKGHETYQIEGD-KKEFFDDREECREAL 753 >gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RCC307] gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. RCC307] Length = 494 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 146/484 (30%), Positives = 226/484 (46%), Gaps = 7/484 (1%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + + P Q + + + S DSR I+ G +FV + G + DG F A+ QGA A V+ Sbjct: 12 IRDAGLSVPQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVI 71 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + Q+ A + A + +++ VTGT+GK++ + Sbjct: 72 GPDAAQQEPPAPGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLI 131 Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + G + +G + +++ TTP L L+ + G + ++E SSH Sbjct: 132 EHLALACGSPTALMGTLANRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSH 191 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 LDQ R+ G + FTNL +DH+DYH T + YF AK +LF K + D Sbjct: 192 ALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQAVV--NSDDL 249 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + C S+ + + + + + D F PL G F + Sbjct: 250 HGRQLAQRLGDQCWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNL 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G+ + G+ +L+ LE + VPGR E V S + VDYAHT + L+ Sbjct: 310 MNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHTPDGLDNA 369 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R G++I VFGCGGDRD+ KRP MG IA LAD +VT DNPR+EDP++I ++ Sbjct: 370 LQAARPFAEGKLICVFGCGGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDDV 429 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + GIP + +R AI AI D++++AGKGHE I+ K D + Sbjct: 430 VAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKGHEDYQILGT-TKVHFDDREEA 488 Query: 490 REIL 493 + L Sbjct: 489 AKAL 492 >gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii L2-63] Length = 488 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 133/502 (26%), Positives = 227/502 (45%), Gaps = 25/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ + L +I+++ DSR ++ G FV + G DGH + Sbjct: 1 MKLKDLLINVEYTVQGNL--------NTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA A+V+S + + + S+ ++ V++TR LSL + +G + + Sbjct: 53 KSAVEKGASALVISDSLDFE-----VPSDVAVVKVEDTRYALSLMSIEFFGHPEDELYTV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 A+TGT GK++ + V +I + +G+ + IG TTP + K++ + Sbjct: 108 AITGTKGKTTTTAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +EASS GL RL G+ G FTN DHI + + + L Sbjct: 168 INAGCKAMVIEASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLA--EYLYCKSLL 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296 + A DD K++ K + K + + + Sbjct: 226 FRQCKFAAANIDDPAWKDITKDFKGSVLTYGFADNADLKGKNAHLLSENGFVGVHFETEG 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K+ +PG+F YNAL A ++ K+ V GR E V Sbjct: 286 IKNLSVDVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDALKVAKVKGRVERVPVPY-NY 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + S+E +L+ +R R+I +FG GG+R + +R MG+ + L+D+++VT Sbjct: 345 TLIIDYAHNALSMENVLETLRQYNPHRLITMFGAGGNRPKVRRYEMGETSGRLSDLSVVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +DN R ED I +I G+ ++ NR +AI+ ++ D++V+AGKGHE Sbjct: 405 EDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAGKGHEDY 464 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + G K + +II +IL Sbjct: 465 QEIK-GVKYHMDEREIIADILN 485 >gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M04-240196] Length = 492 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] Length = 481 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 140/481 (29%), Positives = 233/481 (48%), Gaps = 25/481 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++N++ DSR + G +F+A G DGHL++ +AI GA+AI+ FS Sbjct: 11 GNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIICE------GFS 64 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + + V + + L++ AS Y + VTGT+GK+++AS + Q+ ++G Sbjct: 65 FDRKEGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAG 124 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + + + TTP + + + L + GV + +E SSHG+ Q R + Sbjct: 125 YKVGLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTE 184 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++ G FTNL DH+DYH+ Y N K + F++ LPK + A+ DD +++ Sbjct: 185 GLQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDD-LPKSAFALTNIDDKNGNYMLQNT 243 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + + + + L G F +YN Sbjct: 244 KAKKYSYALKTLADFKAKILEKQLSGTLISID------NTEVWTKLIGVFNIYNLTAIIA 297 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +G++ +L + +L V GRFE+V + G VDYAHT ++L+ +L+ I I Sbjct: 298 TAELLGLEKLDILTIVSQLESVNGRFEYV-VSEDGVTAIVDYAHTPDALKNVLETINDIR 356 Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 + ++I V GCGGDRD+ KRP M IA L++ AI T DNPR+EDP+ I E+ GI Sbjct: 357 TNNEKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEAGISP 416 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + NR +AI+TA ++ + D++++AGKGHE+ + NG + D + + Sbjct: 417 EHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEI-NGVRSHFNDLEEVTNCF 475 Query: 494 G 494 Sbjct: 476 N 476 >gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] Length = 487 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 191/496 (38%), Positives = 276/496 (55%), Gaps = 15/496 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ + + +I + D R + G +F A G++ +G FI Sbjct: 1 MRLTDLLA-------GFPATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+A GA AIV + ++ + +V D R+ + A+R + P+ +AV Sbjct: 54 AQAVADGAAAIVSAPGVAV----GSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + +G + IG T + LTTP + ++ L Sbjct: 110 TGTNGKTSTVELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRK 169 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH T +AYF AK+RLF E++ Sbjct: 170 EGVTHAAFEASSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVD 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ A+++ADD S EV+ G R+LSVG G+ I L + Q + + +EGK Sbjct: 230 QDGAAVVWADDPRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKA 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G +Q NALVAAGL +A G + L L +L+++ V GR E + G IY Sbjct: 290 REVKLPLIGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIY 349 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE ++ +R T R+I VFG GGDRD GKRP+MG+++ L+D IVTDDN Sbjct: 350 VDYAHTPDGLEAAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDN 409 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG- 478 PRSEDP IR +++ G G IE G R EAI AI D++++AGKGHE IV G Sbjct: 410 PRSEDPAAIRRDVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGD 469 Query: 479 --EKKMSVDCDIIREI 492 D + RE Sbjct: 470 QMRVLPFDDVTVAREC 485 >gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] Length = 487 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 147/500 (29%), Positives = 232/500 (46%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++ + + EL+ + ++++V DSR AG +FV + G D H FI Sbjct: 1 MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P I +GA+ +V A T+ +L V N R LSL ++ +G + + Sbjct: 54 PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ I + +G + IG I S TTP L + + + Sbjct: 107 GVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++ +E SS HR+DGI F N+ DHI + A F + + L Sbjct: 167 VEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 L ++ DD + +E+++ A K H+ + +E Sbjct: 225 LQNSRVCLVNRDDGHFREIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + +PG F VYNA+ AAG+C +G+ V LE + V GR E V S Sbjct: 285 DYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVD-GRMEIV-YKSAKC 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH + S+E +L +R R++VVFGCGG+R + +R MG+I LAD++I+T Sbjct: 343 TVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DN R E I A+I G+ FIE +R EAI ++ D++ + GKGHE Sbjct: 403 ADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDIIAIIGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREI 492 + G + +D +++E Sbjct: 463 QEIE-GVRHPFLDRTVVQEA 481 >gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] Length = 492 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP AIA GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266 TNL RDH+DYH T +AY ++ AII DD Y E++ K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--TIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR ++E D++++AGKGHE + G K D ++ + L Sbjct: 440 DRAAAIRYSVERAAANDIILIAGKGHENYQDMQ-GVKHHFSDFEVAEKAL 488 >gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 505 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 146/505 (28%), Positives = 227/505 (44%), Gaps = 24/505 (4%) Query: 1 MK--LQDLIYKDFPE-LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK +++L F + ++ E +I E+S DSR + G +F + G K G Sbjct: 1 MKVSIKELADFLFRRRCLKKIIEAGTNCLENEILEISIDSRQVGEGALFCCLEGTKRKGV 60 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 F A +GA A++ S P L+V + + L ++ LYG Sbjct: 61 EFAQDAQRRGAVAVLTSERVDDLA--------IPQLIVKDAGEACGLASAYLYGLPTSKL 112 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 ++ VTGT+GKS+ ++ I + IG +D TTP + L Sbjct: 113 LMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIGTIVYNDGKSHEDADRTTPQAPLIQSLL 172 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + +EASSHG++Q R+ G FTNL +H+DYH + YF AK LF Sbjct: 173 NKMVDNRCHACVMEASSHGIEQKRIFGCLYDRAVFTNLTPEHLDYHGDMENYFCAKRDLF 232 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + + + A I DD Y +++ + + + IS Sbjct: 233 IKYMRGDWKASINTDDPYGEKIANEFAPHVLGFSLRQKADNAFYGSIRRSSIRGIIMDIS 292 Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + PL GE+ V NAL A+ + ++ D+ ++ + LE VPGR E Sbjct: 293 FPDGSTLENVTLPLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVE 352 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G +DYAHT ++LE +L ++ + SGR+ +VFG GG+R + RPI+G IA AD Sbjct: 353 D-GPVCIIDYAHTPDALEKVLSTVKPLCSGRVWLVFGHGGERFKENRPILGSIAARFADC 411 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +VT DNPRSEDP I +I GI + +R EA+ A++ K DV++V G Sbjct: 412 IVVTMDNPRSEDPRDIALQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTG 471 Query: 467 KGHETVHIVTNGEKKMSVDCDIIRE 491 KG E I+ D + ++E Sbjct: 472 KGPER-QIIFKDRTIPYNDFEALKE 495 >gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M0579] gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240149] gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis NZ-05/33] Length = 492 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 221/470 (47%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M6190] gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis ES14902] Length = 492 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 541 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 156/545 (28%), Positives = 243/545 (44%), Gaps = 57/545 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++ LI ++ + E ++ V++DSR G +FVA+ G++ DGH F+ Sbjct: 1 MKVRQLIKAA---AVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ QG ++ L +TR + L G + + + Sbjct: 58 AAAVKQGCRVVLCQPGC---RLPTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMI 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ + +R+G IG + TTP P L L + Sbjct: 115 GITGTNGKTTASYLLEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREM 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV+HV +E SSH L+Q R+ GI A FTNL +H+DYH ++YF K LF Sbjct: 175 AEAGVSHVIMEVSSHALEQQRVAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRY 234 Query: 238 LPKESPAII-----YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---- 288 L + A++ DDA +R + + + +V Sbjct: 235 LKPGAAAVVLSGRAEQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCGAAGN 294 Query: 289 -------------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + + L G+F + N L AG+ +A+G+ A + Sbjct: 295 ELRLLRRRLSLAGIEAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAA 354 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 L PGR E + RG + VDYAHT ++L +LK +R + +GR++VVFGCGGDRD Sbjct: 355 LADAAPPPGRLERFR-SRRGVEVLVDYAHTPDALGHVLKALRRLATGRLVVVFGCGGDRD 413 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-------------------- 435 + KRP+MG++A LADI ++T DNPRSE P I A+I G Sbjct: 414 RAKRPLMGEVAAALADIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLN 473 Query: 436 ----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R +AIR I DV++V GKGHET I+ D +RE Sbjct: 474 RRTTCQGYDLVVSRRQAIRDTIYHARSGDVVLVCGKGHETSQIIAGSCLD-FDDRREVRE 532 Query: 492 ILGLI 496 L ++ Sbjct: 533 QLAVL 537 >gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM 273] gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium luteolum DSM 273] Length = 523 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 162/502 (32%), Positives = 243/502 (48%), Gaps = 27/502 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++++ + + Q + +++DSR ++ G +FVA+ G DG FI Sbjct: 15 LREILRG-----MGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKD 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AIA+GA A+V + P + V + R+ LSL A+ YG + I+ V Sbjct: 70 AIARGASAVVSE-----DFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGV 124 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ A + I +G+S IG + I TTP L + + Sbjct: 125 TGTNGKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVD 184 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G VS+E SSH L+ R+ GI A FTNL DH+D+H + ++Y AK +LF++ L Sbjct: 185 GGCRAVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQ-LA 243 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI------ 293 I +D + + R S+ G + ++ + Sbjct: 244 PGGIGIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVA 303 Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 EG + F L G F V N L AA +G+ + V L L V GR E V Sbjct: 304 LSFPEGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEG 363 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G VDYAHT ++L L +R + GR++VVFGCGG+RD+ KRP MG+IA+++ Sbjct: 364 PGFEGTAIVDYAHTPDALHQSLGTLRELLPPDGRLLVVFGCGGNRDRQKRPEMGRIAIEM 423 Query: 410 ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD +++T DNPR EDPE I E G + +R EAIRTA+ ML D+L+VAGK Sbjct: 424 ADFSVITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAGK 483 Query: 468 GHETVHIVTNGEKKMSVDCDII 489 GHE T+G ++ D +++ Sbjct: 484 GHECYQE-THGRREHFSDREVL 504 >gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] Length = 508 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 157/505 (31%), Positives = 237/505 (46%), Gaps = 18/505 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + K+ L + +I ++ +++ + SDSR I AG +F+A+ G+ DG +I Sbjct: 2 MAINE--QKNSVILGDLTAIEDQRYAAIELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+A GA A++V A D N PI+ V+N LS A R Y I+ Sbjct: 60 AQAVANGAAAVLVERAGHSAD--KLNYPNVPIIAVENLNLKLSEIAGRFYNNPSHELSIV 117 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S QI G S IG I + TTP I + K L+ Sbjct: 118 GVTGTNGKTSCTQLYMQIANLLGRSCGVIGTLGAGIDGQLNEGLNTTPDAISIQKILAEW 177 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + ++E SSHGL+Q R+ ++ FTNL RDH+DYH + AY K RLF + Sbjct: 178 RDHELAVAAMEVSSHGLEQGRVADVQFELALFTNLSRDHLDYHGSMLAYGETKARLFRQP 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 K A+I DD + ++ G + + + V + Sbjct: 238 GLKC--AVINIDDHFGCALVDEMPATTDVIRYGVEPDARTNHSADVWVDNVRFHPSGVNA 295 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + + PL GEF + N + G + + + KL VPGR E + Sbjct: 296 RLHSDWGSVEINSPLLGEFNLSNLVAVICCFGLQGFALSSIANVIPKLMTVPGRMERI-V 354 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 +S + VDYAHT + LE L +R T G++ VFGCGG+RD GKRP+MG + AD Sbjct: 355 SSADITVVVDYAHTPDGLEKALLAMRQHTDGKLWCVFGCGGNRDHGKRPLMGALVQRHAD 414 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DNPR+E +I EI+ G+ + + +R AI+ AI D +++AGKGHE Sbjct: 415 HVVVTSDNPRNESAAEIIDEILGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKGHE 474 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 ++ + + D R L + Sbjct: 475 DHQLIGD-FRVPFSDITQARLALAV 498 >gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] Length = 509 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 149/472 (31%), Positives = 230/472 (48%), Gaps = 18/472 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR G +FVA+ G DG F+ QA+ G EA++ + ++ + Sbjct: 37 VTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLCEAEA---LPTSVPEQEARV 93 Query: 93 LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 L V R L ++ ++ VTGT+GKSSV ++ + + G + IG Sbjct: 94 LAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAALSEALGTPAAVIGTLG 153 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + RLTTP P+ L AL LS++GV V++E SSH L+Q R+ G + A +T Sbjct: 154 VGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVTGCRFHAAVYT 213 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+DYH + AY AK RLF+ + + A++ DD S ++ + + Sbjct: 214 NLSRDHLDYHGSMAAYAAAKARLFQH--RELALAVVNGDDRLSPLMLAGLAKGVRVLATG 271 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + Q+ I+ + + L G F + N L+A +G + Sbjct: 272 TQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAIATLYGMGAELN 331 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIV 386 + +L VPGR + + + + VDYAHT ++L L+ +R ++ Sbjct: 332 ALFSAAARLAPVPGRMQRLVAENAPT-VVVDYAHTPDALRNALEALRAHLPSSDGAKLWC 390 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIE 441 VFGCGGDRD+GKRP+M + A LAD +++DDNPR E IR EI G+ Sbjct: 391 VFGCGGDRDRGKRPLMAQAAEALADRLVISDDNPRGEPAAAIRDEIAAGLSTDGRARAEC 450 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 G R EAI ++ + D++++AGKGHET + GE+ D DI RE L Sbjct: 451 MGGRREAIEWTLDAAGEHDIVLIAGKGHETYQEIA-GERHPFSDIDIAREAL 501 >gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas atlantica T6c] gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas atlantica T6c] Length = 530 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 142/512 (27%), Positives = 225/512 (43%), Gaps = 22/512 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L+ K + L F +Q + I + DSR + F+A+ G+ DG FIP Sbjct: 18 QLKRAHSKTAQSIKPLLLEFGIQAGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIP 77 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119 QAI+ GA+ I+ + ++R + I+ + LS A+ YG ++ Sbjct: 78 QAISLGAKVIIAECETQAEHGHTSMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIG 137 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-------SSFAQDNRLTTPSPIYLAK 172 VTGT+GK+S Q+ + IG + + + TTP I + K Sbjct: 138 VTGTNGKTSTVQLTSQLAALLNKRAASIGTLGSGVIDQSGACASHNETANTTPDAISMHK 197 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + V V++E SSH L Q R+ +K TNL RDH+DYH T QAY AK Sbjct: 198 LMAQFAQDQVKQVALEVSSHALVQQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRE 257 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAI 285 L ++ + + + + + + K V Sbjct: 258 LLKQP-ELRFAVLNGNEIESKHWLAQLPSAVTPVIYGIADESLMLTDAEHQCLAKDVVYS 316 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + + + D L G F ++NAL A + +G + +H L V GR Sbjct: 317 NQGCRFKLVSSWGECDIQLSLLGRFNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGR 376 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E G + VDYAHT ++L+ L +R + GR+ V+FGCGGDRD GKR +MG++ Sbjct: 377 MERFG-GDNSPTVVVDYAHTPDALKQALVALRQHSQGRLSVIFGCGGDRDTGKRSLMGEV 435 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVL 462 A AD +T+DN RSEDP I +I+ G +R AI A+ D++ Sbjct: 436 AETYADDMTITNDNSRSEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDII 495 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +VAGKGHE I+ N + + ++++ Sbjct: 496 LVAGKGHEDYQIIGNQTVAY-DEREYVQQMFE 526 >gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] Length = 499 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 145/488 (29%), Positives = 226/488 (46%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ S DSR + +G IF+A+ K F A+A GA AI+ + Sbjct: 13 IDAQWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132 + + V + R+ + + R P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVRSDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V ++ +G T + TT + L AL + QG T S+EASS Sbjct: 121 VAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T +AY AK LF K + + + A Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEHA 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A ++L+ ++ + + F PL G Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G + ++ + +L PGR + + R VDYAHT ++L Sbjct: 301 FNVENLVAALIATEQAGFNLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ + D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 +R + Sbjct: 478 VVEVRSAI 485 >gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] Length = 516 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 153/487 (31%), Positives = 236/487 (48%), Gaps = 26/487 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I +S DSR + G +F+A+ G + +G +I QA+ QGA A+++ + D + Sbjct: 28 TPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETAD---HGQ 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ V +F+S A Y + A+TGT+GK++ A + + + G + Sbjct: 85 LSVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAG 144 Query: 146 QIGPTST-----------------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 +G + A + LTTP + + + L+ L G V++E Sbjct: 145 CVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAMQRILAELRDAGARRVAIE 204 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGL Q R+ G+++ FTNL RDH+DYH +Y AK RLF K + + Sbjct: 205 ASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAKSRLFAMSGLKHAVINLD- 263 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D+ + S IH ++ + + PL G Sbjct: 264 DNVGRLILANLDPAVDGITYSFENHTADIHCDRIELGASTLSAELVTPWGRGRLTSPLLG 323 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F + N L G G +L KL VPGR E V ++R + VDYAHT ++ Sbjct: 324 KFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIVDPSARPL-VVVDYAHTPDA 382 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ L+ +R SG+++VVFGCGGDRD+GKR MG++A LAD+ +VT DNPRSE PEKI Sbjct: 383 LDKALRALRLQCSGKLVVVFGCGGDRDRGKRAEMGRVADQLADLVVVTSDNPRSESPEKI 442 Query: 429 RAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +++ GI + +R +AIR AI D++++AGKGHE IV + ++ D Sbjct: 443 IDQVLLGISRKVLAVADRRDAIRAAINAAAVDDIVLIAGKGHEAYQIV-DAKRLPFSDLA 501 Query: 488 IIREILG 494 R L Sbjct: 502 EARLALR 508 >gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 556 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 157/550 (28%), Positives = 252/550 (45%), Gaps = 60/550 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L L ++S R+++ V++DSR +FVA+ G + DGH +I Sbjct: 1 MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57 Query: 61 PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 A+A+G I+ Q + L +TR+ L + L G ++ Sbjct: 58 ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 + +TGT+GK++ A ++ + G IG + TTP P L L+ Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + GVTHV +E SSH L Q R+ G++ FTNL R+H+DYH ++YF AK RLFE Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237 Query: 236 ELLPKESPAIIYAD-----------------------DAYSKEVMKRAHNAG-------C 265 + L + A++ A ++ + ++ G Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R+ G+ + L + N + ++ +++ PL G+F + N L A +A+ Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 + + L PGR E + RG +++VDYAHT +LE +L+ +R + R+I Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 415 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437 V+FGCGGDRD+GKR MG+IA LADI ++T DNPR+E+P I A I G+ Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475 Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G+ +R AI I + DV+V+ GKGHET + + + D Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 534 Query: 487 DIIREILGLI 496 + E L ++ Sbjct: 535 REVAEGLAVV 544 >gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis Z2491] gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis Z2491] gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240013] Length = 492 Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 552 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 157/550 (28%), Positives = 252/550 (45%), Gaps = 60/550 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L L ++S R+++ V++DSR +FVA+ G + DGH +I Sbjct: 1 MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57 Query: 61 PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 A+A+G I+ Q + L +TR+ L + L G ++ Sbjct: 58 ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 + +TGT+GK++ A ++ + G IG + TTP P L L+ Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + GVTHV +E SSH L Q R+ G++ FTNL R+H+DYH ++YF AK RLFE Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237 Query: 236 ELLPKESPAIIYAD-----------------------DAYSKEVMKRAHNAG-------C 265 + L + A++ A ++ + ++ G Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R+ G+ + L + N + ++ +++ PL G+F + N L A +A+ Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 + + L PGR E + RG +++VDYAHT +LE +L+ +R + R+I Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 415 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437 V+FGCGGDRD+GKR MG+IA LADI ++T DNPR+E+P I A I G+ Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475 Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G+ +R AI I + DV+V+ GKGHET + + + D Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 534 Query: 487 DIIREILGLI 496 + E L ++ Sbjct: 535 REVAEGLAVV 544 >gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] Length = 482 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I + TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] Length = 482 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] Length = 501 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 147/488 (30%), Positives = 223/488 (45%), Gaps = 25/488 (5%) Query: 27 ERKINE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + ++ + +DSR IQ G +F+A G DG +I AI +GA + + Q Sbjct: 17 QHTVSGCQLLHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQ--- 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ--R 139 P + + + + A++ YG I+ VTGT+GK+S+ ++ Q Sbjct: 74 WQPEWRVPNQGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQAIDNLE 133 Query: 140 SGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 S IG Q TTP P+ + + QG +++E SSHGL Q+R Sbjct: 134 QAPSCAIIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYAD 249 ++G+ FTNL RDH+DYH + Y AK RLF + + A+ Sbjct: 194 VNGVPFHTAVFTNLTRDHLDYHGSMAEYGAAKERLFYWQGLQNAIINSDDAFGAALAAEL 253 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +S + N + I + A ++++ + L G Sbjct: 254 KQHSGSLKTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEGSAQTRLLGR 313 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G A G D L L ++ GR + + VDYAHT ++L Sbjct: 314 FNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMD-CIIQPDKPLVVVDYAHTPDAL 372 Query: 370 EMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 E L +R I R+ VFGCGGDRD+GKRP+MG++A LAD A+VT DNPR+EDP+ Sbjct: 373 EKALTTLREIQQPESRLWCVFGCGGDRDRGKRPLMGEVAARLADKAVVTSDNPRTEDPQA 432 Query: 428 IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 I A+I+ +P + + +R AI I QD++++AGKGHET V G K D Sbjct: 433 IIADILPAVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKGHETYQDVQ-GVKHHFSDF 491 Query: 487 DIIREILG 494 ++ ++ LG Sbjct: 492 EVAQDALG 499 >gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA2] gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL044PA1] gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA3] Length = 499 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 147/492 (29%), Positives = 228/492 (46%), Gaps = 23/492 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L I ++ DSR ++ G ++V + G G F A GA A++ Sbjct: 1 MASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTD 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASF 132 + + + P+++VD+ R +++ A+R++G + +TGT+GK++ A Sbjct: 61 EHGA----KLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFL 116 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVE 188 V+ + +G IG + +TTP L + + +G + V +E Sbjct: 117 VEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVME 176 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG +FTNLGRDH+D+H+T YF AK RLF L + Sbjct: 177 VSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVIN--V 234 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD +++++R G R ++ + A ++ + LP Sbjct: 235 DDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLP 294 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GEF V NA +A + G+ V + L V PGR E V + VD+AHT Sbjct: 295 GEFNVRNAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQ 353 Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++ L R++ SGR+I V G GGDRD KR MG++A + ADI ++TDDNPR+EDP Sbjct: 354 AIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPA 413 Query: 427 KIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 IRA ++ G I + R EAI A+ M DV+ V GKGHET + + E Sbjct: 414 VIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS-E 472 Query: 480 KKMSVDCDIIRE 491 D ++IR Sbjct: 473 VLPFDDREVIRN 484 >gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] Length = 482 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I + TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA6140] Length = 492 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] Length = 499 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 145/499 (29%), Positives = 231/499 (46%), Gaps = 26/499 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +N + ++ + + SDSR + FVA G++ DG FI QAI +GA +++ Sbjct: 1 MNAFNPDGLKLLGVNVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWE 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 F + P L V + R L A +YG+ + ++ +TGT+GK+S++ + Sbjct: 61 E----HGFKWNPTWSVPNLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHW 116 Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + G S IG + TTP + + L+ QG +E SS Sbjct: 117 LAKSFGALGRKSALIGTLGNGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSS 176 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H L Q R++G+ TNL RDH+D+H Q+Y AK RLF+ A++ DD Sbjct: 177 HALTQGRVNGVHFDVALLTNLTRDHLDFHGDMQSYAAAKKRLFDW--ASLKYAVLNLDDM 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDF 300 + E+ ++ +A V+ G + ++ + + Sbjct: 235 FGAELAEQLQDASVEVIGYGLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAA 294 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G F N L A + +A + L V GR + +G + V Sbjct: 295 ALCSRLIGSFNASNLLGALAVLLASEVRIDDAARELGLQKAVAGRMQTLGGKGLPT-VVV 353 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 DYAHT ++L+ +L +R +T G++I VFGCGGDRD+GKRP+MG +A LAD+ I+T Sbjct: 354 DYAHTPDALDKVLTTVREVTESAGGKVICVFGCGGDRDRGKRPMMGTVASKLADVRIITS 413 Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DNPRSE+ +I +EI G+ G + +R +AI AI D +++AGKGHE + Sbjct: 414 DNPRSEEAAEIVSEIAAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKGHENYQEIK 473 Query: 477 NGEKKMSVDCDIIREILGL 495 G + D +I L + Sbjct: 474 -GVRYPFSDSEIAHRALSM 491 >gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 492 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citromicrobium bathyomarinum JL354] Length = 495 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 183/497 (36%), Positives = 263/497 (52%), Gaps = 22/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E + + + D R + G +F A G K +G FI Sbjct: 1 MKLNRLLEQAGRE--------DRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A + A ++ + + RK + A++ + P+ I+AV Sbjct: 53 DAAVA--------AGAIAVVVRPGAKVEGALQIADEAPRKAFAEIAAQYFTPAPDTIVAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + G + IG T + LTTP + LS L+ Sbjct: 105 TGTNGKTSTVEMTRQLWRMLGERAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH++ EASSHGLDQ+R G +++AG+FTN RDH+DYH++ QAYF AKMRLF+E++ Sbjct: 165 EGVTHIAYEASSHGLDQYRNYGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIA 224 Query: 240 KESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+I+AD ++ + RA G R+ +VG QG I L Q V I+ G Sbjct: 225 DGGTAVIWADGGEWADKARTRAEKRGLRIFTVGPQGDDICLIGQEPSQLGQSVEIARNGD 284 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G++Q NAL AA L +A G D A + + + +L V GR E G + Sbjct: 285 RRTIRLPLIGQYQAANALTAAALALASGADEARLWDAVGRLQPVRGRLERAVITQSGAPV 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAHT ++LE + +R +GR+IVVFG GGDRD GKR MG++A LAD+ IVTDD Sbjct: 345 YVDYAHTPDALEAAIAALRPHVNGRLIVVFGAGGDRDTGKRGPMGEVASRLADVVIVTDD 404 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NPR EDP IR ++ G E R EAI AIE++ + D++++AGKGHE I+ + Sbjct: 405 NPRGEDPADIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKGHEEGQIIGS 464 Query: 478 G---EKKMSVDCDIIRE 491 G D + RE Sbjct: 465 GDTMRVLPFNDVQVARE 481 >gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M13399] Length = 492 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] Length = 499 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 143/488 (29%), Positives = 225/488 (46%), Gaps = 30/488 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76 QW ++ + + DSR ++AG IF+A+ K F A+ GA A++ + Sbjct: 13 IDAQWPQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETE 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + + V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 71 LGVANE----------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L L + G T S+EASS Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--AD 249 HGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ K + + Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFNSLKVAVINLDDAHA 240 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D K S+ ++ + + + F PL G Sbjct: 241 DLMIKSAKNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGH 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N + A G D ++ + KL PGR + + + R VDYAHT ++L Sbjct: 301 FNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ GI E +R EAI+ + D++V+AGKGHE + NG + D Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477 Query: 486 CDIIREIL 493 +R + Sbjct: 478 VVEVRSAI 485 >gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Leptospirillum sp. Group II '5-way CG'] Length = 509 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 159/497 (31%), Positives = 245/497 (49%), Gaps = 19/497 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +N ++ +R + ++ DSR ++ G +F+ G F+ +A+ +GA +V Sbjct: 15 LNLPPPVCGRFPDR-VLNLTDDSRQVEEGALFLIRPGEGFR-WEFVNEALDRGAFYLVAD 72 Query: 75 SAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 S S+ IR + + +V+N + + AS +G ++ VTGT+GK+ Sbjct: 73 RNAFPEIDSRPALSSRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKT 132 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + +C+ GL IG + + TTP I + + G+ VS Sbjct: 133 TSSFLTRSVCRAGGLPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVS 192 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPA 244 +E SSH LDQ RL G FTNL RDH+DYH+T +AYF AK + ++E A Sbjct: 193 MEVSSHALDQDRLAGTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVA 252 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +++ D Y + K G RVL+ G I V + + T+ + Sbjct: 253 VVHTGDEYGARLAKELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSID 312 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G + + N L A G A+G+ + + E + L VPGRFE V + G + VDYA Sbjct: 313 SSLSGHYNLQNILGAVGCGEALGLSTEKIAEGIHSLSGVPGRFERV-DSPAGFSVIVDYA 371 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L +L +R +T G++I VFGCGGDRD+GKRP MG +A L+D ++T DNPR+E Sbjct: 372 HTDDALSNLLSAVRPVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTE 431 Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +PE I EI G+ ++ +R AI AI D +V+AGKGHE I+ E Sbjct: 432 NPESILDEIEPGLRETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKGHENYQILG-KE 490 Query: 480 KKMSVDCDIIREILGLI 496 K D ++ R L I Sbjct: 491 KIHFDDREMARLALAEI 507 >gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] Length = 482 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 141/492 (28%), Positives = 220/492 (44%), Gaps = 35/492 (7%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 +++ + V+ DSR +Q G+++VA+ G + DGH FIP A+ +GA AIV Sbjct: 12 ALYRAPGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDAVQRGAVAIVGEEP-- 69 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI 136 + P L V + R+ LS A+ YG ++ VTGT GK++ + V + Sbjct: 70 -------LEPGVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDGKTTTSCLVHHL 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 R+G + I + TTP + AL+ + +G+TH +E SSH Sbjct: 123 LTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGLTHAVLETSSHA 182 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L QHR+ + +TNL +H+D+H + +AYF AK L A Sbjct: 183 LAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVNRAGFSILNAGCPY----- 237 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + G Q +V + + T+ G + P+ G + V Sbjct: 238 -----AMRLTHRPHTTYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGEAFLPMIGRYNVE 292 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A G+ L L + VPGR + + + R VD+AHT +L L Sbjct: 293 NALAALAAAHRAGVPLEEALPALARFSGVPGRMQIL--QAHPIRAVVDFAHTPKALAKAL 350 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R T GR+IVV G G+RD KR +G+ A+ LAD A+ T+++ RSED I E+ Sbjct: 351 TALRPTTPGRLIVVIGAAGERDPAKRAPLGRTAVTLADFAVFTEEDARSEDVHAILQEME 410 Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G + K +R +AIR A+ + D +V AGKGHE + E + Sbjct: 411 RGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTVVFAGKGHERTLERAD-ETLPWDE 469 Query: 486 CDIIREILGLIL 497 + +R+ LG+ + Sbjct: 470 AEEVRKALGIAI 481 >gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M01-240355] Length = 492 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis N1568] Length = 492 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVCRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + L G F N L A G Sbjct: 263 YGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] Length = 488 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 137/505 (27%), Positives = 223/505 (44%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + E++ E ++ +++DSR +++G +FV I G DGH ++ Sbjct: 1 MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A + + ++ +NTR L+L ++ +G E + + Sbjct: 54 SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106 Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G V +E SS GL HR I G FTNLG+DHI + + + + Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAEIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L ++ I D E + R + + ++ V Sbjct: 224 LFQQCKLGIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG+F VYN+L A +C G+ S + E L+ HV GR E + + Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ VFGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 + G K + +I E+L I Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485 >gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] Length = 482 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 154/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ P + +I V+ DSR ++AG +F+A+ G + DGH +I Sbjct: 1 MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P AIA+GA AI+ D + + V ++ + A+ YG + + Sbjct: 54 PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+++A+ + + G I + I TTP PI L L + Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +G +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPK + ++ DD + + + + + + Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNIRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + G+F N L G + +G VL L LH V GRF+ V + +G Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+ Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399 Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR E+P+ I +++ G + + +R EAIRTA + K DV++VAGKGHE Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G K D ++++EI Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481 >gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis 8013] Length = 492 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP AIA GA + F+ N P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGK---FTWNPEWNVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] Length = 495 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 218/472 (46%), Gaps = 18/472 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ VS S ++ G ++VA+ G + G F+ +A+ +GA A++ S A + Sbjct: 33 VEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVAVLSDS----WGVEAAVE 88 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L + R + +S +YG+ + ++ +TGTSGK+S A V+ + +G + Sbjct: 89 HGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTG 148 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + + TTP L +Y QGVT + +E SSH L HR +GI Sbjct: 149 LIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVSSHALTLHRAEGISF 208 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FT G DH+D+H T YF AK +LF+ + D KR Sbjct: 209 AVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDG----RCRVEVVNADDA---WAKRLVTPD 261 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ + + Q ++ LPG + NAL+A G A Sbjct: 262 TVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRLPGRHNIANALLAYGCLTA 321 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ + + VPGR E V + VDYAH +++ +L+ +R ITSG + Sbjct: 322 VGVPVETAIAGVADCAGVPGRMELV-SEDNPVHGVVDYAHKPDAITAVLEALRPITSGSL 380 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442 I V G GGDRD KR +MG A AD+ IVTDDNPR+EDP +RA ++ G+ +E Sbjct: 381 IAVIGAGGDRDPSKRTLMGDAAARAADLVIVTDDNPRTEDPAAVRAGVLAGVGDRPHLEV 440 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R AI A+ D + + GKGHE+ + + D ++ + L Sbjct: 441 ADRATAIDEAVARAKPGDTIALLGKGHESGQELAD-RVLPFDDRRVLADALS 491 >gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] Length = 490 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 152/499 (30%), Positives = 227/499 (45%), Gaps = 23/499 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ L+ P ++ + DSR++ G +F+A+ G DG FI Sbjct: 2 MTLQQLLPDV---------TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA+ A V+ + F P + + + + A+R YG+ N++ Sbjct: 53 SQAV----AAGAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+ F++ G +G Q TTP PI L L+ + Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARV 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V++E SSH LDQHRL + F+NL RDH+DYH +AY AK LF Sbjct: 169 RDAGADCVAMEVSSHALDQHRLGSTPVPVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTR- 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD + ++ + V G + V + + ++V G Sbjct: 228 -DGVKLAVINCDDPAAYSLIGCLADGVRCVTFGDQPGATVRCAAVTFTADGMRAELTVGG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 PL G F + N + AG+ GI +A + L + VPGR E V Sbjct: 287 DPLTVTLPLFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQQPGCPT- 345 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE L+ R GR+ + GCGGDRD GKRP M +A AD ++T Sbjct: 346 VIVDYAHTPDGLEKALQACRAHFHGRLFCIVGCGGDRDTGKRPQMAAVAERGADRVVLTS 405 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSEDP++I ++ G+ R +A+ ++ + DV+++AGKGHE Sbjct: 406 DNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKGHEDYQE 465 Query: 475 VTNGEKKMSVDCDIIREIL 493 V +G + S D D+ R+ Sbjct: 466 V-DGVRYPSDDRDLARKAF 483 >gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei Ss046] gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046] Length = 497 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 172/507 (33%), Positives = 253/507 (49%), Gaps = 27/507 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 QAIAQG AI+ + + D P++ + + LS A R Y + +N+ Sbjct: 54 QAIAQGVAAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ + Q Q G +S +G TT S + + L+ Sbjct: 114 VGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAG 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E Sbjct: 174 LVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 AII ADD + + + +A ++ G+++ V + + Sbjct: 234 --HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIR 291 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 S D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 292 FSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TA 350 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+ Sbjct: 351 PGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADV 410 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 A+VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VAGKGH Sbjct: 411 AVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGH 470 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 E IV N D + +LG+I Sbjct: 471 EDYQIVGNQRLDY-SDRVTVARLLGVI 496 >gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella denitrificans OS217] gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella denitrificans OS217] Length = 502 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 135/508 (26%), Positives = 217/508 (42%), Gaps = 34/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L D++ F + + + +S DSR + G +F+A+ G++ DG +I Sbjct: 2 MRLSDILAPWFHYAGVESA-----------SSMSLDSRKVTQGCLFIALPGHQVDGRAYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDN---TRKFLSLFASRLYGKHPEN 116 QA AQGA A +V + + S V N LS A++ Y P+ Sbjct: 51 EQAKAQGAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKA 173 + + +TGT+GK+SV+ + Q+ G + +G D+ TT + + Sbjct: 111 MALIGITGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQ 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L +G ++E SSHGL Q R+ + FTNL RDH+DYH +Y A + Sbjct: 171 LHDFDVKGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASY--ASAKK 228 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 P A++ DD + + + SV K + + Sbjct: 229 RLFQFPSLKYALLNLDDDTGAQWFEELAATKRKGFSVSPNAKACYYTDKLHFDDAGVQGD 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAA---------GLCIAIGIDSALVLEHLEKLHVVPG 344 + V L A G+ A +L KL V G Sbjct: 289 FYYHDFGENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAG 348 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + +G + VDYAHT +++E LK +R G++ VFGCGGDRD+GKRP+M + Sbjct: 349 RMERF-SLPQGASLVVDYAHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQ 407 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 A AD +VT DN RSEDP I +++ G+ + + +R+ A++ + D+ Sbjct: 408 AAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDI 467 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDII 489 +++AGKGHET + + + Sbjct: 468 VLLAGKGHETYQEIAGQRLDY-DERALA 494 >gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] Length = 498 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 225/479 (46%), Gaps = 24/479 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++++DSR G +F A G + DG F+ A+ GA A++ D Sbjct: 18 DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDG----DGFCAPALAV 73 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P V R+ A L+G+ + + VTGT+GK++V+ + + G +G Sbjct: 74 PGFGVRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVG 133 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP + L + + +QG ++E SS GLDQ R++G + Sbjct: 134 TLGCGFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY AK RLFE DD + + +R G V Sbjct: 194 IFTNLSRDHLDYHGTMEAYAAAKARLFERPELSACVIN--IDDPWGLALARRLVVEGRAV 251 Query: 268 LSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++ ++ A + T+ EG++ + + F V N + Sbjct: 252 IACTLYAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAV 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG +A GI + L +L GR + VG + +DYAH+ ++L +L+ +R Sbjct: 312 AGALLARGIAFDELPPVLGRLAPPQGRMQLVG-GVCEPLVVIDYAHSPDALAKVLEALRG 370 Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 GR++ VFGCGGDRD GKRP+MG+IA +AD ++T DNPRSEDP++I I G Sbjct: 371 TVHSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAG 430 Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E +R +AI A+ DV+++AGKGHE + G++ D + + L Sbjct: 431 AGAAAECVVDRAQAITRAVGEARADDVVLIAGKGHEPYQEIL-GQRLPFSDLEQAKRAL 488 >gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] Length = 951 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 159/483 (32%), Positives = 241/483 (49%), Gaps = 26/483 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR I+ G +FVA G DG L+I +A+A GA A++ + + + ++ P Sbjct: 30 HLKLDSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDAVAAVADQA--P 87 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V R L A YG+ ++AVTGT+GK+S ++ R+ IG Sbjct: 88 MLPVTGLRALLGELADTWYGRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147 Query: 150 TSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + LTTP + + + L+ + G V++EASS G++Q R+DG+++ Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 207 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAG 264 +FTNL RDH+DYH T + Y AK RLF P + A+I ADD + ++ G Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLFRW--PGLTAAVINADDEAGRRLIAGLPAGMAMG 265 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + + + + A Q T+ + + L G V N L+ AG+ Sbjct: 266 YSLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLYQ 325 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSR--------GGRIYVDYAHTSNSLEMILKNI 376 +G+ A + L V GR + V + G + VDYAHT ++L L + Sbjct: 326 LGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVDYAHTPDALARALSAL 385 Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + SGR+I +FGCGG+RD GKRP MG+IA DLAD +V+ DNPR+E PE I +I+ Sbjct: 386 RAVATARSGRLICLFGCGGERDPGKRPEMGRIAADLADHVVVSSDNPRTESPEAIVEQIL 445 Query: 434 HGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GIP + + +R AI I DV+++AGKGHET + GEK D + R Sbjct: 446 AGIPDSVRPDVQVDRARAIMQTIWAAAPDDVVLLAGKGHETYQDIG-GEKLPFDDREWAR 504 Query: 491 EIL 493 L Sbjct: 505 LAL 507 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 75/423 (17%), Positives = 146/423 (34%), Gaps = 32/423 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55 L+ E + + + +R+ I VS+D+R I G +FVA+VG D Sbjct: 478 LLAGKGHETYQDIGGEKLPFDDREWARLALLVPQIKGVSTDTRRIGQGELFVALVGENFD 537 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H ++ QA A+G A + A + P LV+ +TR L + + Sbjct: 538 AHNYLDQAEARG--------ACAAVVAHAVPDAKLPQLVLGDTRIALMRIGAAWRAQFAL 589 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++AVTG++GK++ + + + ++ +++ + L Sbjct: 590 PVVAVTGSNGKTTTKEMISAMLAEWQGEAGRLATAGNLNNDIGVPLT----LLRLRPEHR 645 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + E + + TN R+H ++ + +A A Sbjct: 646 AAVFELGMNHPGEIAQLAAIAAPTVAL------VTNAQREHQEFMHSVEAV--AHENGAA 697 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 E +Y D + + G ++ +++ A + + + Sbjct: 698 IAALPEDGVAVYPGDEPYSAIWDALAEPRRVLRFGLQPGLDVYAEQILADVHATRCRVVT 757 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D P+PG + NAL A IA G + L V GR + + Sbjct: 758 PMGVADLTLPVPGLHNLRNALAAIASAIAAGAPLEGAVRALSGFSPVAGRMQHKHMSDGT 817 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413 I Y +S+ + + + + R++V+ G GD +G A + A Sbjct: 818 LLIDDTYNANPDSVRVAVDVLARMAGKRVLVLGDMGEVGDNGPAMHVEVGNYAREQGLDA 877 Query: 414 IVT 416 +T Sbjct: 878 FIT 880 >gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 528 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 160/534 (29%), Positives = 255/534 (47%), Gaps = 72/534 (13%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L +++ + +S +S+ ++ +F AI G DG+ FI A+ Q A ++ + Sbjct: 2 LPNLKQLFQQHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKK 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ V++ + L Y K P+N+ AVTGT+GKSSV S++ Q Sbjct: 62 NIVIDK--------VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTY 113 Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + IG + LTT + K L+ G+ +++ EASSH Sbjct: 114 SLLGKKTASIGTIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------- 239 GLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L Sbjct: 174 GLDQARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTE 233 Query: 240 ------------------------------------KESPAIIYADDAYSKEVMKRAHNA 263 AI+ +D + V HN Sbjct: 234 RRTAAYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNH 293 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + ++VG +G + ++ + Q + + ++++F P+ G FQ N L+AA Sbjct: 294 NIKFITVGKKGDLE-ITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVH 352 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382 G D ++E L ++ V GR E I+VDY+HT ++LE L ++ I Sbjct: 353 YTGFDFNKIIEILTQVKPVKGRMER----IDNTNIFVDYSHTPDALEKALTELKNIKLRD 408 Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439 ++ VVFGCGG+RD+ KR IMG+IA LAD I+TDDNPR+E+P+ IR EII GI + Sbjct: 409 SKLSVVFGCGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADY 468 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E NR EAI+ I L + D+L++AGKGHE I+ + +K D +++R+ + Sbjct: 469 TEIANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEVVRKCI 521 >gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] Length = 492 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + L G F N L A G Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA 1090] gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] Length = 492 Score = 291 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] Length = 498 Score = 291 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 137/488 (28%), Positives = 230/488 (47%), Gaps = 35/488 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAI-----VGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 W ++ DSR ++ G IF+A+ F +A+ QGA A++ + Sbjct: 15 ADWMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKTV---QFAQKALEQGALAVISETEP 71 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----ENILAVTGTSGKSSVASFV 133 + P LVV + R + + + ILAVTGT+GK++++ V Sbjct: 72 DVS----------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNGKTTISRLV 121 Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + G + +G T + + TT + L AL + G S+EASSH Sbjct: 122 AEFIMLQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEFASIEASSH 181 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RL+G + ++NL RDH+DYH T QAY A+ + A+I DD + Sbjct: 182 GLEQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAY--AEAKSGLFRFESLKVAVINIDDEH 239 Query: 253 SKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ ++ K + Q ++ + + + ++ PL G Sbjct: 240 AQIMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTASAEYIVNSPLLGH 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F + N + + + G + ++ + +L PGR + + R VDYAHT ++L Sbjct: 300 FNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVLRDGER--LFVVDYAHTPDAL 357 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L ++ S + VFGCGGDRD+GKRP+M + ALD +DIA++T DNPR+EDP +I Sbjct: 358 TQVLVTLKRHVSQNLWAVFGCGGDRDRGKRPLMTQAALDGSDIAVLTSDNPRTEDPAQIF 417 Query: 430 AEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A++ +GI + E +R EAI+ A++ D++V+AGKGHE + +G + D Sbjct: 418 ADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIAGKGHENYQEI-DGVRHWFDD 476 Query: 486 CDIIREIL 493 ++ + Sbjct: 477 VIEVQAAI 484 >gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] Length = 501 Score = 291 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 153/481 (31%), Positives = 229/481 (47%), Gaps = 25/481 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++DSR + G +F A G+ DG +I AI +GA A++ P Sbjct: 21 GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELP----VP 76 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V R+ A +Y + + VTGT+GK++V ++ + G +G Sbjct: 77 GFAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVGT 136 Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + L TTP + L L+ L +G ++E SS GLDQ R++G++ Sbjct: 137 LGSGFPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDVAV 196 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH+T AY AK RLF LP S A+I DDA+ +R AG + Sbjct: 197 FTNLTRDHLDYHRTMDAYAEAKARLFA--LPGISRAVINLDDAFGLTQARRLVAAGQVDV 254 Query: 269 SVGYQ----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + ++ A + Q ++ G+ D + F V N L Sbjct: 255 IGYTCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNLLAV 314 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377 G + G+ L + +L+ GR + VG I +DYAHT ++L +L+ +R Sbjct: 315 IGALVMRGVAVEEALAVVGRLNPPEGRMQLVGGIGEPL-IVIDYAHTPDALAKVLEAVRG 373 Query: 378 --TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 GR++ VFGCGGDRD GKRP+MG++A LAD +VT DNPRSEDP KI I G Sbjct: 374 TVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAIAAG 433 Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R EAIR A+ DV+V+AGKGHE + +G++ D + + L Sbjct: 434 AGASADCIVDRAEAIRIAVGEAGPDDVVVLAGKGHEPYQEI-HGQRLPFSDVEQAKAALA 492 Query: 495 L 495 + Sbjct: 493 V 493 >gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] Length = 488 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 149/503 (29%), Positives = 239/503 (47%), Gaps = 32/503 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L ++ +I + + E+ DSR + G +FVAI G + DGH + Sbjct: 1 MKQLTTILTNLS--IIKTIG----DAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSY 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I Q G IV + N ++V++ L + AS Y +N+ Sbjct: 55 IEQVTEIGVSVIVCE------VLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQL 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ S + ++ + G +S + + + TTP + L + Sbjct: 109 VGITGTNGKTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQ 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +G + +E SSHG+ Q+R+ G+ +FTN+ DH+DYH T Q Y AK + F+E Sbjct: 169 AVDKGCEYAFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDE 228 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP + A++ DD + +++ + G + + Sbjct: 229 -LPASTKALVNLDDRNGRVMLQNTVASKHFFTLKGDAEFKGKILESRFDGMLL------N 281 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +F L G+F YN L+ G+ +G + VL L L V GRF+ Sbjct: 282 FNQQEFWTNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEGRFQ-TFHTQGDR 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT ++LE +L I I + I V GCGGDRD+ KRP M IA +D+AI Sbjct: 341 VIIVDYAHTPDALENVLDTIGGIRTKNEQLITVVGCGGDRDKTKRPEMADIAARKSDLAI 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E+PE I A++ G+ ++ +R EAI+TA++M K D++++AGKGH Sbjct: 401 FTSDNPRTENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKGH 460 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 ET + NG + D ++ +E+ Sbjct: 461 ETYQEI-NGVRNHFSDVEVAKEL 482 >gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] Length = 488 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 147/466 (31%), Positives = 233/466 (50%), Gaps = 14/466 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR + +F A+ G +G ++ I G + VV + LQ R + + Sbjct: 29 LETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQ------RDDIEL 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + K L +GK P ++AVTGT+GKSS+ ++ Q+ + G SS +G Sbjct: 83 VSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTFGV 142 Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + TTP + + +AL ++ +GV V+ EASSH LDQ R++G+ F+N Sbjct: 143 GPLDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRIEGVPFQTAVFSN 202 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH +Y A + S +I DD Y+ + + A + C S Sbjct: 203 LSRDHLDYHGDMNSY--ALAKRRLFSFECVSHSIFCLDDGYAGFMAEGAARSSCHYYSEQ 260 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++K++ + + + G D PL G F V NAL A D A Sbjct: 261 DSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYGVDDKAT 320 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 ++ L L PGR + V + + VD+AHT+++LE+ L+ ++ T+GR+I VFGCG Sbjct: 321 LIRGLSTLTGAPGRMDKVQLPNAPL-VVVDFAHTADALEVALQAVKEHTNGRLICVFGCG 379 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEA 448 GDRD+GKRP+M A+ AD +T DNPR+E E+I ++++ F + +R A Sbjct: 380 GDRDRGKRPLMMAAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAFSFELDRRMA 439 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I AI +DV+++AGKGHET + G K D + + L Sbjct: 440 IHQAILSAGPEDVILIAGKGHETYQDIQ-GVKYHFNDKEEALKALE 484 >gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 220/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR + G FVAI G G F+ QA A GA A++ + Sbjct: 19 DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ ++ VTGT+GK+S + Q G + Sbjct: 74 PVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + + Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGFGRTLFASRDPVLR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN ++++G+ PL G F V N L AG Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485 >gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 492 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] Length = 488 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 158/471 (33%), Positives = 251/471 (53%), Gaps = 16/471 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V++DSR +G +FVA+ G+++DG ++ A+ +G +V + + L + Sbjct: 24 DVAADSRRATSGGVFVAMAGSRDDGARYVADALEKGVAFVVAAPGHDLPAGTTAR----- 78 Query: 92 ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VD+ + L A+ +G ++AVTGT+GK++V+ ++++ Q +G + +G Sbjct: 79 LVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGT 138 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D LTTP + + + L+ ++ G T +EASSH LDQ RL G+ A + Sbjct: 139 VAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAA 198 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH+ YF AK +LF L + A+ DDA+ +++ A L Sbjct: 199 FTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGL 258 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIG 326 +V G L H ++ I D + PLPG N L A G+ +A+G Sbjct: 259 TVPPTGFGRLLSGHVQHHGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGVALALG 318 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + H PGR E + N G ++VDYAHT ++LE +L R T+GR+ V Sbjct: 319 WPAETFAALADC-HGAPGRLERIP-NPSGRAVFVDYAHTPDALENVLSAAREFTAGRLFV 376 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443 VFGCGG+RD+ KRP+MG LAD+A++T DNPR EDP I ++ G+ I + Sbjct: 377 VFGCGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARRAILEP 436 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R AI A+ + +DVLV+AGKGHET + + K D ++RE+ G Sbjct: 437 DRRRAIELALSEMRPEDVLVIAGKGHETYQQIGD-VKYPFSDAVVVRELTG 486 >gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha710] gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis OX99.30304] Length = 492 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 219/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxidans DMS010] gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxydans DMS010] Length = 513 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 251/494 (50%), Gaps = 20/494 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGHLFIPQAIAQGAEA 70 L+ + ++ +E + ++S DSR + AG +F+A+ ++ + QA+ +GA A Sbjct: 14 LLQDVVAEGVELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQ---KHLHQALDKGAFA 70 Query: 71 IVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 +++ + L + + + V N + A+R Y + +++ +AVTGT+GK Sbjct: 71 VLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIAVTGTNGK 130 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV+ F+ Q+ + G IG S + +TTP P+ + + L+ +G +V Sbjct: 131 TSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYV 190 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +EASSH L+Q RL+ + + TNL RDH+DYH T Y AK + + S A+ Sbjct: 191 VLEASSHALEQGRLNSVDINVAVLTNLSRDHLDYHHTMADY--AKAKQRLFEMGSVSRAV 248 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I A D++ + +M + + + + + Q +++ G+ P Sbjct: 249 INACDSFGRTLMNALRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLP 308 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G F V NAL G+ ++IG + + L + V GR E G + + + +DYAHT Sbjct: 309 VLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQPM-LVIDYAHT 367 Query: 366 SNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++LE L+ +R G++ VFGCGGDRD+GKRP+MGKIA AD I+TDDNPR+E Sbjct: 368 PDALEQALRTLRGHLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEIEADEIIITDDNPRTE 427 Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 D + I +I+ G + +R AI AI D+++VAGKGHE + + K Sbjct: 428 DHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLVAGKGHEAYQEI-DHIK 486 Query: 481 KMSVDCDIIREILG 494 D II+E+LG Sbjct: 487 FPFSDTVIIKEMLG 500 >gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiobacillus denitrificans ATCC 25259] gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus denitrificans ATCC 25259] Length = 506 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 153/504 (30%), Positives = 235/504 (46%), Gaps = 34/504 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + P ++ +L + P + + +DSR G +FVA G+ DG FIPQA+AQ Sbjct: 18 IRESVPHILERLGLAPGE--------LVNDSRRAAPGKVFVAYPGDARDGRDFIPQAVAQ 69 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA+ ++ + + P V + + A+ +YG+ +++ VTGT+ Sbjct: 70 GADGVLWEAD----HYQWDPALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTN 125 Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-------TSTISSFAQDNRLTTPSPIYLAKALSYL 177 GK+SVA ++ Q G + IG T + TTP I L + L+ Sbjct: 126 GKTSVAHWIAQALSALGRKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARY 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G ++E SSHGL Q R++G + TNL RDH+DYH +Y AK RLF Sbjct: 186 RGEGAVACAMEVSSHGLAQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFNWP 245 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A++ DDA+ + + RV G+Q + + + + + + Sbjct: 246 DLEW--AVLNVDDAFGQRL--EGETRPARVAGYGFQRGAVVARGLQLSQAGMHLALQTDW 301 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D + PL G F N L A + + L ++ GR + +G + Sbjct: 302 GDAEIDAPLLGRFNAANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQTLGGEAHPL- 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDY+HT ++LE +L +R I G R+I VFGCGG+RD+GKRP+MG A AD VT Sbjct: 361 VVVDYSHTPDALEKVLATLREIAGGGRLICVFGCGGNRDKGKRPLMGAAAGRGADEIWVT 420 Query: 417 DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPR EDP I +I G+ + R AI A+ + DV+++AGKGHE Sbjct: 421 SDNPRHEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKGHE 480 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 V GE+ D + R+ L Sbjct: 481 DYQEVA-GERLPFSDIAMARKALE 503 >gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] Length = 493 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 155/468 (33%), Positives = 224/468 (47%), Gaps = 16/468 (3%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR +Q G +FVA G DG +IP AIA GA + S F+ L Sbjct: 29 MDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSG---DGFAWRPEWQIANLG 85 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V + ++ L A++LYG + VTGT+GK+S++ ++ Q IG Sbjct: 86 VPHLKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGN 145 Query: 153 ISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ TTP+P+ + L QG V++E SSHGLDQ+R+ G + FTN Sbjct: 146 GFWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTN 205 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH + AY +K +LF + AII DD + +E+ + G Sbjct: 206 LTRDHLDYHGSMAAYGASKAKLFYWQSLQH--AIINTDDEFGRELAAGLRADRPNLNVYG 263 Query: 272 YQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 Y + + A QV + L G F N GL A G Sbjct: 264 YGFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYS 323 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL L ++ GR + + + + VDYAHT ++LE L +R I + Sbjct: 324 LPDVLRVLAQIRPATGRMD-CISRAGRPLVVVDYAHTPDALEKALATLREIKPQGASLWC 382 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445 VFGCGG+RD+GKRP+MG A+ AD ++T DNPR E+P+ I A+I+ +P + + +R Sbjct: 383 VFGCGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEADR 442 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI+TAI QD++++AGKGHET V GEK D +I L Sbjct: 443 RVAIQTAIRRAAPQDIVLIAGKGHETYQDVQ-GEKHHFSDFEIAEAAL 489 >gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris TIE-1] gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris TIE-1] Length = 485 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 205/491 (41%), Positives = 274/491 (55%), Gaps = 21/491 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL + ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDLFSAEADIAAPAAALAIGGLA--------VDSRAVKPGDLFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ + + P + + N R L+ A+R Y + PE I AV Sbjct: 53 A-------AAVATGAVAVAGEHRPEGDLAVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G +S IG + + LTTP PI L ++L ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T Y NAK+RLF L+ Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296 A+I AD S +V++ A G R++++G G I L QQ+T+ Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDATVEGFAQQLTVEHA 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK PL GEFQ+ NALVAAGL I G D+A LE L PGR + VG G Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVG-ARNGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD+ I+T Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IR+ I+ PG E G+R EAIRTAI L D LV+AGKGHET IV Sbjct: 405 DDNPRSEDPATIRSAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464 Query: 477 NGEKKMSVDCD 487 + D D Sbjct: 465 D-RVLHFSDHD 474 >gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] Length = 492 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] Length = 488 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 211/498 (42%), Positives = 281/498 (56%), Gaps = 18/498 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + FPE + P + +++DSR ++ G++FVA+ G DG F Sbjct: 1 MSMATTLGALFPEAAGPEAGIP-------VTGLTADSRRVRPGFVFVAVPGTTMDGRSFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A+V + + L V + R+ L+L A+RL+ + PE I+AV Sbjct: 54 TAAAAAGAVAMVTEGP-----RPEALPAEVAYLAVPDARRALALAAARLFARQPETIVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGKSSVA FV+Q+ R G S +G A LTTP P+ L + L L+ Sbjct: 109 TGTSGKSSVADFVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAG 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+T +++EASSHG++Q RLDG++L A +FTNLG DH+DYH T +AY AK+RLFE LLP Sbjct: 169 DGITDLAMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + AI+ AD + V G +++ G G+ + L V Q +TI EG+ Sbjct: 229 DAATAIVNADGPMADRVAASVRARGLPLVTTGLSGETLRLSAVETRGFAQALTIKAEGRA 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G FQV NALVAAGL +A V+ L L VPGR E V G Sbjct: 289 YQVDLPLVGGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVA-THNGA 347 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH +L +L+ +R T+GR++ V GCGGDRD+ KRP+MG+IA+ AD IVT Sbjct: 348 LCVVDYAHKPEALAGVLQALRPFTTGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVT 407 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRAEI+ PG E G+R EAIRTA+ L DVLVVAGKGHET I+ Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKGHETGQIIG 467 Query: 477 NGEKKMSVDCDIIREILG 494 N D D + + Sbjct: 468 N-RTLPFSDRDAVLSAIE 484 >gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] Length = 509 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 155/496 (31%), Positives = 235/496 (47%), Gaps = 21/496 (4%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 DF +LI+ I I+ V DSR ++ G+ F+A+ G+ DG+ +I +AI GA Sbjct: 2 DFFQLIDGAEILSCSG-NAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAV 60 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 AIV SA + R + + R+ LS ++ Y E I VTGT+GK+ Sbjct: 61 AIVTDSATEIP------RPGVAWAICAHGRRALSRLSANFYKHPAEKLAITGVTGTNGKT 114 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + + +G + IG + TTP P+ L + ++G T Sbjct: 115 TTTYILDSLLRHAGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEAV 174 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R+ GI FTNL RDH+D+H T ++YF +K LF+ + I Sbjct: 175 MEVSSHALAQERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVGI 234 Query: 247 YADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D ++ MK A+ +V + G+ H + + + P Sbjct: 235 INRDDEWAEKFMKVANKHCDKVYTYGFAAGDFHAENAEMTSTGTRFDLVTPEGRVPIFSP 294 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+ V N L AA + GI + E + + PGRFE V + VDYAHT Sbjct: 295 LIGKVNVLNLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERVSAGQ-PFTVIVDYAHT 353 Query: 366 SNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 ++L + K R GR+I +FGCGGDRD+ KRP+MGK A + +D+ ++T DNPR Sbjct: 354 DDALRNVTKLARDFVQQAGGGRVITLFGCGGDRDKTKRPLMGKAAGEGSDLVVLTSDNPR 413 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 SEDP+ I +++ G+ FI + +R +AI A+ DV+++AGKGHE Sbjct: 414 SEDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKGHEKTQTTRE 473 Query: 478 GEKKMSVDCDIIREIL 493 G D + E L Sbjct: 474 GV-FPFDDAQVALETL 488 >gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID18] gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] Length = 492 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida W619] gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619] Length = 496 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 152/491 (30%), Positives = 225/491 (45%), Gaps = 24/491 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +F R+ I E++ DSR ++AG +F+A+ G K DG I A+ + AY Sbjct: 7 SKLFAHASRDPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDAL----ARGAAAVAY 62 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 Q ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 63 EQQGTHVLPITDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122 Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G IG T Q RLTTP PI + L L G V++E SSH L Sbjct: 123 ALDALGQRCGLIGTLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHAL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ ++ TNL RDH+DYH + +AY AK +LF + D Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLRCQVV---NLDDGFG 239 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---------GKDFDFLFP 305 + V + + L+ A ++ + + Sbjct: 240 RRLAADFARRPSVDHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQ 299 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F + N L A +A+ +L+ +L GR + +G + + VDYAHT Sbjct: 300 LLGRFNLSNMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQRLGGGEKPL-VVVDYAHT 358 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+EDP Sbjct: 359 PDALEKVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDP 418 Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + I +I G R EAI I DV+V+AGKGHE + NG++ Sbjct: 419 QAIFNDIRPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKGHEDYQEI-NGQRHD 477 Query: 483 SVDCDIIREIL 493 D + L Sbjct: 478 FSDLVEAEKAL 488 >gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis CU385] gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] Length = 492 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 144/470 (30%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + V GT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R A+R A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAVRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 519 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 245/505 (48%), Gaps = 28/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +DL+ ++ E++ + + I +V+ DSR + G +FVAI G DGH F+ Sbjct: 26 MNYRDLLTEE--EILEVRNGDRTEA----ITDVAYDSRRVGPGAMFVAIFGFATDGHRFV 79 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 AI QGA IV + + + L V + R+ L ASR +G E I Sbjct: 80 EAAIEQGAAVIVHQADLARYH------DDVVYLKVTDCRRLLGHIASRFFGHPSEKITVT 133 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSY 176 +TGT+GK+S F+ I + +G ++G + TT ++ Sbjct: 134 GITGTNGKTSSTYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAE 193 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + + +EASS LD RL + FTNL +DH+DYH+T +AYF AK RLF++ Sbjct: 194 AVAAGCSDLVMEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQ 253 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTI 293 E AII DD + ++++ R ++ + Y ++ A+ T+ Sbjct: 254 ---TEKAAIINRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTL 310 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G F VYNA+ GID A + L VV GR E + TN Sbjct: 311 QAGDEKETIFLDVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNL 370 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I VDYAHT ++LE +LK ++ + GR+I VFGCGGDRD GKRP+MG IA AD + Sbjct: 371 -DFDIVVDYAHTPDALENLLKTVKELARGRVIAVFGCGGDRDHGKRPLMGAIAAKEADFS 429 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 ++T DN RSEDPE I +I + + +R EA A+ K DV++ AGKGH Sbjct: 430 VLTSDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKGH 489 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E NG + + +I +++ Sbjct: 490 EKTETSRNGVRPYY-EKAVILDVIE 513 >gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA2] Length = 499 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + +TGT+GK++ A V+ + +G I Sbjct: 72 VPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483 >gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL074PA1] gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA2] gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA1] gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA2] gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA1] gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA2] gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA1] gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA2] gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL007PA1] gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL056PA1] gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA3] gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA2] gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA1] gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA1] gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL045PA1] gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA2] gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA1] gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA2] gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA3] gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL078PA1] gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA2] gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA3] gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA1] gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL038PA1] gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA2] gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL097PA1] gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA3] gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA2] gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA2] gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA1] gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL020PA1] gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL099PA1] Length = 499 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + +TGT+GK++ A V+ + +G I Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483 >gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] Length = 492 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] Length = 498 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 150/502 (29%), Positives = 238/502 (47%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ PE++ + P E I ++ +S+ + +FVAI G K DGH +I Sbjct: 6 MKLNCILED--PEIVEVRNNNP----EIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI++GA ++ + + + V N R L +SR YG E +I Sbjct: 60 GDAISRGAILVIYEHDLDE------YQDDIMYVKVKNARHMLGTMSSRFYGHPSEALSIT 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176 VTGT+GK+++ ++ I Q+ G IG + + TTP + + + +S Sbjct: 114 GVTGTNGKTTITHMLKSIFQKDGRKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G ++ +E SSH LD R++G+ G F+NL +DH+DYH+T + YF AK +LF Sbjct: 174 MVEAGCQNLVMEVSSHALDLDRVNGVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTY 233 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 DD + K++ R + + + + T+ Sbjct: 234 TSKANII---NCDDVWGKKLYDRCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLV 290 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + + +PGE VYN++ A + GI ++ E L + V GR E + Sbjct: 291 TKDGEEEIFISIPGEVMVYNSMAAIINALLEGISIEVIKEALASMSGVEGRMERL-DLDT 349 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I +DYAH+ +SLE +LK+++T+ G++ +VFGC GDRD+ KRPIMG+IA + AD I Sbjct: 350 EFDIIIDYAHSPDSLERLLKSVKTMYDGKVYLVFGCNGDRDKEKRPIMGRIAGEFADHVI 409 Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNP SEDP+ I + + R +AI A + DVLV+AGKGHE Sbjct: 410 VTSDNPASEDPQSIIDTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKGHE 469 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 E + + E Sbjct: 470 K-QETMKDENLYYNEWETAEEA 490 >gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 486 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 145/459 (31%), Positives = 219/459 (47%), Gaps = 19/459 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V SDSR + G IFVA+ G K G+ FIP+A+ +GA +V S + Sbjct: 17 VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQDR----------V 66 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L +N L A +G + ++ VTGT+GK++ + ++ I G + +G Sbjct: 67 LHHENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTV 126 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TTP + L + L+ + + GV V +EASSH LDQ RL GI + F Sbjct: 127 NYRWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGIDIHVAVF 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T L RDH+DYH + YF AK +LF P+ + D + Sbjct: 187 TGLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEAPRVMGYGL 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + + S +G+ + LPG N L A G I +G++ Sbjct: 247 QKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGICLGLEP 306 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L+ L +PGR E V G IYVDYAHT ++LE + ++ ++ R+ V+FG Sbjct: 307 E-HFDCLKDLGPIPGRLEKVP-APEGINIYVDYAHTPDALENVCLALKELSFSRLAVLFG 364 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRI 446 CGGDRD+GKRP M + AD +T DNPR E+P +I +I + G P + +R Sbjct: 365 CGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPGLAGHPCVEVEPDRR 424 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +AI+ A+ +L + L+VAGKGHE + G + D Sbjct: 425 QAIQKAVSLLAPGEALLVAGKGHEDYQEI-RGVRHDFSD 462 >gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alistipes sp. HGB5] Length = 485 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 228/502 (45%), Gaps = 31/502 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L++L+ ++ + + DSR + G F A+ G + DGH F Sbjct: 1 MKTLKELLRNTPVTALHGDDSAA-------VAGLVYDSRAVGPGDCFFAVRGTQNDGHDF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 IP ++A + ++ + V + L+ A+ Y + Sbjct: 54 IPA------AVAKGAAAVVCERLPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ + + + + G + I + TTP P+ L + Sbjct: 108 VGITGTNGKTTTVTLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMRE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G + +E SSH + Q R G+ G F+N+ DH+DYH+T Y AK LF + Sbjct: 168 MADEGCEYCFMECSSHAIVQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAKK-LFFD 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L KE+ A+ ADD + +++ A + ++ ++ Sbjct: 227 SLSKEAFALTNADDKNGRVMVQNTAAAIHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEV 286 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F YN L G + +G D L LH V GRFE V ++ G Sbjct: 287 WVGLVGRFN------AYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVR-SANGV 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +++ I I + ++IVV GCGGDRD+ KRP M +IA+ AD A+ Sbjct: 340 TAVVDYAHTPDALENVIRTIEEIRTPAQKLIVVCGCGGDRDRTKRPEMAQIAVRYADTAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E PE I ++ G+ F+ +R EAIRTA+ + D+L+VAGKGHET Sbjct: 400 FTSDNPRHESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKGHET 459 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 IV + K D + +R+ Sbjct: 460 YQIVGD-VKHPFDDREEVRKAF 480 >gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] Length = 509 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 161/520 (30%), Positives = 240/520 (46%), Gaps = 43/520 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL P I R+IN + DSR +++G +F A+ G DGH FI Sbjct: 1 MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A +GA A+V+ + V + R +S A+ YG+ + ++ Sbjct: 54 ASARERGAVAVVLEDE-------TRAPCGMEWIRVGDARLAMSRMAALFYGQPTDGVPVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ I R+G+ + +G S S TTP + L + L Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 +G V +E SSH L+Q R+D + FTNL RDH+DYH+ ++YF +K RLF Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226 Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 K A D + A + + V + T+ Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETAVAPVISYGLAADAAV-RAENVVFSVDGIAGTL 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 F L G F +YN L A + +G+ ++L +E VPGR E V N Sbjct: 286 VTPFGTAPFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH-NE 344 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++LE +LK + + +GRII VFGCGGDRD+GKRP+M +I+ + + Sbjct: 345 RGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLT 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAIE 454 IVT DNPR+E+P I E++ GI GF +R +AIR A Sbjct: 405 IVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAAT 464 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + D++++AGKGHE I+ EK D + Sbjct: 465 VAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEAIAAFR 503 >gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] Length = 488 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 232/476 (48%), Gaps = 17/476 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++DSR +QAG +F+A G DG +I QA+ GA A+V + + Sbjct: 8 NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQV 67 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + L V + ++ + A+ Y ++ VTGT+GK+SV+ ++ Q G + Sbjct: 68 SN----LAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKT 123 Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G AQ + TTP I L L+ Q V++E SSHGLDQ R++G+ Sbjct: 124 AVLGTIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVA 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TNL RDH+DYH+T +AY AK +LF AI+ DDA+ K ++ + Sbjct: 184 FDVAVLTNLSRDHLDYHETMEAYAAAKQKLFAW--EGLITAIVNTDDAFGKSLVSALNAQ 241 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L+ G + + + I+ P+ G F YN L + Sbjct: 242 DKPCLTYGLTSADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLL 301 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 A+ + LE + K+ V GR + G + +DYAHT ++LE +L ++ Sbjct: 302 ALKVSLPDSLEAIAKIKPVLGRMQQFGGGDLPL-VVIDYAHTPDALEKVLSTLKEQIDLA 360 Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 ++I VFGCGGDRD GKRP+MG IA LAD VT DNPRSE+P I A ++ + Sbjct: 361 ASSVKLICVFGCGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPAAIIAAVVSEMKA 420 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 G++ +R AIR AI+ N D+++VAGKGHE + +G K D I + L Sbjct: 421 GYVVDADRANAIRAAIQGANSGDIVLVAGKGHENYQEI-SGVKYPFDDALIAQAAL 475 >gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 506 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 134/514 (26%), Positives = 220/514 (42%), Gaps = 35/514 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + K E + + ++ ++ DSR I +FV +VG DGH +I Sbjct: 1 MKLSKICEKIKYECLQGS-------MDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ +GA IVV + +A I +L V++ R L+L ++ L+ E ++ + Sbjct: 54 PDAVEKGASVIVVERD----EEAAQIPGTITVLKVESARYALALMSAALFDYPAEKLITI 109 Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 GT GK++ ++ + + +G IG + ++ TTP L + + + Sbjct: 110 GLTGTKGKTTTTYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SS GL R GI G FTNL DHI + + + + Sbjct: 170 VEAGCEYAVMEVSSQGLKMDRTAGIMFDYGVFTNLSPDHIGP---NEHASFEEYLECKSM 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----------VCAIH 286 L ++ I D E + H V + L K + Sbjct: 227 LFRQCKIGILNADDEHSEAVAANHTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENG 286 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D + +PG F VYN+LV +C GI +L+ L K+ V GR Sbjct: 287 KLGMYFHVKGCMDCEARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDGLNKVQV-KGRV 345 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E + + + +DYAH S +L + R+I V+G GG+R + +R MG++ Sbjct: 346 EMLPVSK-DYYLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVT 404 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 ++AD+ ++T DNPR E+ I +I G+ +IE +R EAI + D++ Sbjct: 405 GEMADLCVLTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQPGDMI 464 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 V+ GKGHE + G K + + + EIL I Sbjct: 465 VLLGKGHEDYQEI-RGVKYHFDEREAVAEILEEI 497 >gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis WUE 2594] Length = 492 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID332] gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] Length = 492 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N GL A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 502 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 154/500 (30%), Positives = 236/500 (47%), Gaps = 17/500 (3%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 L DL ++ L + P I ++ S + G +FVAIVG++ DG + Sbjct: 5 NLCDLFASTPWEQQIKEALRLVP-----ITIKGITLKSDEVTTGDLFVAIVGHETDGRHY 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 IPQA++QGA AI+ + + D S PI+ + N ++LS A Y N Sbjct: 60 IPQALSQGAGAILAEAEGVVNDDVSVDQIQGVPIVYLFNLNQYLSQLAGEFYHHPASQLN 119 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175 ++ +TGT+GK++ + Q G S +G N+ TT S I + + LS Sbjct: 120 LVGITGTNGKTTNTQLLAQWTMALGEVSAVLGTLGNGLLRQLSSNQNTTASAIEVQQILS 179 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + T ++E SSH L QHR+ + A F+NL RDH+DYH Y AK LF Sbjct: 180 NMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMANYEIAKKSLFL 239 Query: 236 ELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + K + + E+ + + G QG ++ +K+ N + Sbjct: 240 DHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSAQKIQYHENGALIFF 299 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + PL G F V N L+ +A+ +L+ KL +PGR E Sbjct: 300 DSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQPIPGRMEVFKKVG 359 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R + VDYAHT ++L+ L R G++ +FGCGGDRD+GKRP+MGKIA LAD Sbjct: 360 RPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQM 418 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++TDDNPR+E P+ I A+I+ G+ +R EAI + +DV+++AGKGHE Sbjct: 419 VITDDNPRTESPKMITADILKGVLKTDRASVIQDRTEAITHILNQAMPEDVILIAGKGHE 478 Query: 471 TVHIVTNGEKKMSVDCDIIR 490 + + + S + R Sbjct: 479 VYQFIEHQKLDYSDRATVAR 498 >gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] Length = 487 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 238/503 (47%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ + + P I + E+++++++SDSR G +FVA+ G DGH +I Sbjct: 1 MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 PQA QG A VV D + V +T + L+ AS YG ++ + Sbjct: 54 PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + ++ ++ G + + + + ++ TTP P+ L + Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH Q R+ + G FTNL RDH+DYH + Y AK F + Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKK-SFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ A++ ADD +++ C + + + Sbjct: 227 LGAQAFALVNADDKNGLVMVQNTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVF 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F YN L G +G D VL L +L V GRF+ T+ G Sbjct: 287 VRLVGDFNA------YNLLCVYGASCELGQDREEVLRILSELTSVDGRFQ-TFTSKDGYV 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L +L IR + S ++I V G GG+RD+GKRPIM K A ++ I+T Sbjct: 340 AIVDYAHTPDALVNVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR E+P++I E+ G+ + +R EAIRTA + K D +++AGKGHET Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K D +++ + + Sbjct: 460 YQEI-RGVKHHFDDREVVCDAMS 481 >gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha153] Length = 492 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 217/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis XB6B4] Length = 516 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 139/523 (26%), Positives = 228/523 (43%), Gaps = 44/523 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ E + + I ++ S ++ G +FV I G DGH +I Sbjct: 1 MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105 A+ GA A+VV + ++ ++ V +TR+ L+ Sbjct: 54 MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113 Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL 162 ++ Y + I+ +TGT GK++ A I + +G + +G T + + Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP L + L+ + S G +E SS G+ R++GI G F N+ DHI Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273 + A+ + L ++ A I D + E + H S G + Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 + + ++ + + +FL +PG F V NAL A + I +V Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVK 350 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + L++ VPGR E V + VDYAH SL +L +R GR++V+FGCGG+ Sbjct: 351 DALQR-QTVPGRCENVRISD-KFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGN 408 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 R + +R MG+ A LAD I+T DNPR EDPE I +I GI G +I +R A+ Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 A + + D++V+AGKGHE + G + D +++++ Sbjct: 469 AYAFDHAREGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 510 >gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis W83] gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas gingivalis W83] Length = 487 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 238/503 (47%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ + + P I + E+++++++SDSR G +FVA+ G DGH +I Sbjct: 1 MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 PQA QG A VV D + V +T + L+ AS YG ++ + Sbjct: 54 PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++VA+ + ++ ++ G + + + + ++ TTP P+ L + Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH Q R+ + G FTNL RDH+DYH + Y AK F + Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKK-SFFDG 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L ++ A++ ADD +++ C + + + Sbjct: 227 LGAQAFALVNADDKNGLVMVQNTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVF 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F YN L G +G D VL L +L V GRF+ T+ G Sbjct: 287 VRLVGDFNA------YNLLCVYGASCELGQDREEVLRILSELTSVDGRFQ-TFTSKDGYV 339 Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L +L IR + S ++I V G GG+RD+GKRPIM K A ++ I+T Sbjct: 340 AIVDYAHTPDALINVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR E+P++I E+ G+ + +R EAIRTA + K D +++AGKGHET Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G K D +++ + + Sbjct: 460 YQEI-RGVKHHFDDREVVCDAMS 481 >gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] Length = 497 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 224/503 (44%), Gaps = 31/503 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL DL+ K + + +++I ++ DSR + G +F I G DGH + Sbjct: 10 KLADLLEKLEYQCLQGT-------MDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAK 62 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +GA ++V + + ++ V+N+R ++ ++ +G E + + Sbjct: 63 DVAEKGAAVLIVQDKVEVPE-------EVTVIQVENSRYAMACISAAWFGHPAEKLKTIG 115 Query: 122 GTSGKSSVASFVQQICQRS--GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 T K + G + IG TI + TTP + K + + Sbjct: 116 ITGTKGKTTTTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G V +E SS GL HR G + G FTN+ DHI + A + LL Sbjct: 176 EAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP---NEHKDFADYLHCKALL 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ I+ DA + + H + + + K + I+ + K Sbjct: 233 FKQCKVGIFNADADHLDEILEGHTCQVETFGFSEKADL-RAENTKLVTGKGTLGIAYDVK 291 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +F LPG F VYN+L A +C G+ + + L++ V GR E V + Sbjct: 292 GLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDE- 349 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 350 FTLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTII 409 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I GI ++E +R EAI AI D++V+AGKGHE Sbjct: 410 TSDNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHED 469 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G+K + +I+EIL Sbjct: 470 YQEIK-GKKYPMDERVLIQEILE 491 >gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 495 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR + G FVAI G G F+ QA A GA A++ + Sbjct: 19 DVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ ++ VTGT+GK+S + Q G + Sbjct: 74 PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFASLDPVLR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + + HN +++ G+ PL G F V N L AG Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485 >gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens KN400] Length = 509 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 161/520 (30%), Positives = 240/520 (46%), Gaps = 43/520 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL P I R+IN + DSR +++G +F A+ G DGH FI Sbjct: 1 MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A +GA A+V+ + V + R +S A+ YG+ + ++ Sbjct: 54 ASARERGAVAVVLEDE-------TRAPCGMEWIRVGDARLAMSRMAALFYGQPTDGVPVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ I R+G+ + +G S S TTP + L + L Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235 +G V +E SSH L+Q R+D + FTNL RDH+DYH+ ++YF +K RLF Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226 Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 K A D + A + + V + T+ Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETAVAPVISYGLAADAAV-RAENVVFSVDGIAGTL 285 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 F L G F +YN L A + +G+ ++L +E VPGR E V N Sbjct: 286 VTPFGTALFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH-NE 344 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++LE +LK + + +GRII VFGCGGDRD+GKRP+M +I+ + + Sbjct: 345 RGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLT 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAIE 454 IVT DNPR+E+P I E++ GI GF +R +AIR A Sbjct: 405 IVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAAT 464 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + D++++AGKGHE I+ EK D + Sbjct: 465 VAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEAIAAFR 503 >gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] Length = 514 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 161/507 (31%), Positives = 231/507 (45%), Gaps = 31/507 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQ 62 I +++ L + ++SD+R ++AG +FVA V DG IPQ Sbjct: 12 IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119 AI GA A++ + + A +R IL VD+ + A++ Y ++ Sbjct: 67 AIEAGASAVLAEAHGYVVPADAPLR----ILPVDDLAELAGPLAAQWYAVPGPDALRVIG 122 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S + ++ Q R G +G T TTP I L +L+ L Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLAELH 182 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237 G V++E SSHGL+Q R DG + FTNL +DH+DYH T Y AK RLF Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242 Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + ++ A + + + + G ++ V Sbjct: 243 LRAAVINRDDAAGVRLLTGLRAGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFD 302 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I P+ G F V N L G+ + G+ + LEKL V GR E G Sbjct: 303 IDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-G 361 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G + VDYAHT ++LE L+ + IT GR+ VFGCGGDRD GKRP MG IA L Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIAERL 421 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A ++T DNPRSEDP++I I G+ + +R AI A+ + DV+VVAG Sbjct: 422 AQHVVLTSDNPRSEDPQQILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAG 481 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE+ + G K+ D + +R L Sbjct: 482 KGHESTQEIG-GRKRPFSDQEHVRLAL 507 >gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas europaea ATCC 19718] gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas europaea ATCC 19718] Length = 521 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 143/493 (29%), Positives = 226/493 (45%), Gaps = 32/493 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + K+ + +DSR ++ G F+A G + D IPQAIA+G AI+ Q FS Sbjct: 23 DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEK----QGFSWKP 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 P L V R AS YG ++ +TGT+GK++ + + Q G + Sbjct: 79 EWKIPNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKT 138 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + TTP +YL + ++ QG + + +EASSHGL Q RL G + Sbjct: 139 AVIGTLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSE 198 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---------IYADDAYSK 254 TNL RDH+DYH + AY AK +LF + + Sbjct: 199 FAVAVLTNLTRDHLDYHDSMDAYAAAKAKLFFWEGLQYAVLNLDEVLGVELSQQLAGKDL 258 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ + K ++ + + + + + G + YN Sbjct: 259 SIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRYASLQCNVTGRYNAYN 318 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L +A ID + L ++ +PGR E +G ++ + VDYAHT ++L +L Sbjct: 319 LLAVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQPV-VIVDYAHTPDALNEVLT 377 Query: 375 NIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 +R +G ++I V GCGGDRD+GKRP++G+IA LAD I+T DNPR+ Sbjct: 378 GLRETLAGTRIKKRIRKNQAKLICVIGCGGDRDRGKRPLIGEIASRLADEVIITSDNPRN 437 Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E+P I +E++ G + +R AI AI K D++++AGKG ET + G+K Sbjct: 438 ENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVLIAGKGAETSQEIQ-GKK 496 Query: 481 KMSVDCDIIREIL 493 D +++R++L Sbjct: 497 YPYDDREVVRQVL 509 >gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] Length = 491 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 152/485 (31%), Positives = 225/485 (46%), Gaps = 12/485 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + +++ + DSR ++AG FVAI G G F+ QA A GA A++ Sbjct: 3 LSQLLPDVPLLHDVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + + + V R L A + +G+ + ++ VTGT+GK+S Sbjct: 63 PPAPAELPAPADA-----IAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQL 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q G+ + +G + TTP + L+ L +G V++E SS Sbjct: 118 LAQALTLLGMPTGTLGTLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSS 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+D + FTNL RDH+DYH Y AK +LF K + + D Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDDFG 237 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + V S + + + HN +++ G+ PL G F Sbjct: 238 RTLFAALDPALRAIGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFN 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L AG A+ I A + E L +L + GR +G + VDYAHT ++LE Sbjct: 298 VDNLLAVAGALYALDIAPAQIAEVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQ 357 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L ++R+ R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+ Sbjct: 358 ALASLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVAD 417 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G I + +R AI AI M + D++++AGKGHE V D + Sbjct: 418 ILRGFARPDAAIVQRDRAAAIHQAISMASASDIVLIAGKGHEPYQEVAGVW-HAFNDAIV 476 Query: 489 IREIL 493 + L Sbjct: 477 AAQAL 481 >gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] Length = 493 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 141/500 (28%), Positives = 221/500 (44%), Gaps = 27/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ + + ++I+ + ++ +V DSR + +FV G K D H FI Sbjct: 5 MKFREWLEELEYDVISG-------NLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + G +A+VV + D + V ++R+ L+L ++ +G+ E ++ + Sbjct: 58 PDVVKAGVKALVVERQAEIPD-------GVTAIRVHSSREALALLSAARFGRPQEKMITI 110 Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T K ++ I + G IG T I S TTP L ++ + Sbjct: 111 GVTGTKGKTTTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++ +E SS HR+DGI+ G FTN+ DHI + A F + +L Sbjct: 171 VQAGCEYMVMEVSSQAFKMHRVDGIRFDYGLFTNISPDHIG--PDEHADFAEYLYYKSQL 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296 L + I+ DD + +E++K + V Sbjct: 229 LSRCRIGIVNRDDEHYREIIKDTACELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTG 288 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + +PG+F VYNAL A +C + + V LE L V GR E V +S+ Sbjct: 289 RYKLEARVNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLSV-NGRMEIV-YSSKKC 346 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH + S+E +LK +R R++ VFGCGG+R + +R MG A LAD I+T Sbjct: 347 TVIVDYAHNAVSMESLLKTLREYHPKRLVCVFGCGGNRSKDRRYSMGDSAGRLADFTILT 406 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DN R E I A+I I FIE +R EAI ++ D++ V GKGHE Sbjct: 407 ADNSRFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMIAVIGKGHEDY 466 Query: 473 HIVTNGEKKMSVDCDIIREI 492 V NG + D +++ EI Sbjct: 467 QEV-NGVRHHFSDREVVLEI 485 >gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis FAM18] gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis FAM18] Length = 492 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 144/468 (30%), Positives = 215/468 (45%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANDYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] Length = 494 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 139/496 (28%), Positives = 231/496 (46%), Gaps = 25/496 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ ++ S E I +V+ DSR ++ +FV I G+ DG L++ Sbjct: 1 MKLTNLLRPIKYSILQGES-------EPDIEKVTHDSREVERDTLFVCIKGSATDGALYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A+ +GA AI+ + ++V+N R+ L+ AS YG+ + + + Sbjct: 54 GEAVEKGAVAILADRRIE-------VPREVTFILVENVRETLAKIASVFYGEPSKEMTVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ A + I ++SG IG I + T+P + + + L + Sbjct: 107 GITGTKGKTTTAYMIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q +E SS GL HR D I+ G FTNLG+DHI + + + Sbjct: 167 VLQKCDIAVMEVSSQGLKLHRTDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFS 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + + + + + + ++ + Sbjct: 227 QSDFGIANMDSPYWREMFLRANCDVETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKD 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + D + + G F +YN+L A +C +G+ + + L K V GR E + TN G Sbjct: 287 R-GDIVLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCK-TQVKGRVEQISTNK-GTI 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +DYAH + SL+ IL+ + + RII +FGCGG+R + +R MGK++ LAD I+T Sbjct: 344 ILIDYAHNAMSLQSILEMVHSYRPHRIICIFGCGGNRAKERRYEMGKVSGALADFTIITS 403 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR E+P +I +EI G+ ++E NR EAIR I+ D++V+AGKGHE Sbjct: 404 DNPRYENPLQIMSEIREGVEDGNGNYLEICNREEAIRYGIKYAGAADIIVIAGKGHEEYQ 463 Query: 474 IVTNGEKKMSVDCDII 489 + G + D +++ Sbjct: 464 EIE-GIRYHMTDREVV 478 >gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL001PA1] gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA2] gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA3] gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA4] gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL060PA1] gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA2] gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL103PA1] Length = 499 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 226/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ ++ A Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEA----G 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G + +TGT+GK++ A V+ +G I Sbjct: 72 VPIIVVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQSIGS-EVLPFDDREVIR 483 >gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris HaA2] gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris HaA2] Length = 485 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 210/491 (42%), Positives = 279/491 (56%), Gaps = 21/491 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL D +Q + ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDLFSDDTA--------ITVQAAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI + D P + + N R+ L+L A+R++ + P+ I AV Sbjct: 53 A-------AAIEAGAVAVAGDHPPAGDLAVPFVRLTNPRRALALAAARMFPQQPQTIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G +S IG + + LTTP PI L ++L ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDAIAR 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH Y NAK+RLF +L+ Sbjct: 166 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVV 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296 A+I AD S EV+ A G R++SVG G I L Q++T+ Sbjct: 226 DGGAAVISADHDCSAEVIDAARARGLRLISVGRNGDAGAGIRLIAAAVDGFAQRLTLDHA 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+++ PL GEFQ+ NALVAAGL I G D A V L+ L PGR E VG G Sbjct: 286 GRNYQVHLPLVGEFQIENALVAAGLVIGTGGDPAAVFAALDHLEGAPGRLELVG-ERNGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD IVT Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAESADAVIVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPR EDP IRA I+ PG E G+R EAIRTAI L D LV+AGKGHET IV Sbjct: 405 DDNPRREDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464 Query: 477 NGEKKMSVDCD 487 + D + Sbjct: 465 D-TVLPFSDHE 474 >gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei 53G] Length = 492 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 169/493 (34%), Positives = 250/493 (50%), Gaps = 16/493 (3%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L+ + R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + Sbjct: 3 DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62 Query: 76 AYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131 + D P++ + + LS A R Y + +N+ + VTGT+GK++ Sbjct: 63 KAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 122 Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q Q G +S +G TT S + + L+ L QG T ++E S Sbjct: 123 LLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVS 182 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL QHR+ +K A FTNL RDH+DYH + Y AK L+ E AII ADD Sbjct: 183 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADD 240 Query: 251 AYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + +A ++ G+++ V + + S D + L Sbjct: 241 EVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHL 300 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L+A +A+G A +L+ +L V GR E T + VDYAHT Sbjct: 301 MGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTP 359 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P Sbjct: 360 DALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPR 419 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 420 AIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY- 478 Query: 484 VDCDIIREILGLI 496 D + +LG+I Sbjct: 479 SDRVTVARLLGVI 491 >gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] Length = 497 Score = 289 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 135/503 (26%), Positives = 226/503 (44%), Gaps = 31/503 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL DL+ K + + +++I +++ DSR + G +F I G DGH + Sbjct: 10 KLVDLLEKLEYQCLQGT-------MDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAK 62 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + +GA ++V + + ++ V+N+R ++ ++ +G E + + Sbjct: 63 EVAEKGAAVLIVQDKVEVPE-------EVTVIQVENSRYAMACISAAWFGHPAEKLKTIG 115 Query: 122 GTSGKSSVASFVQQICQRS--GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 T K + G + IG TI + TTP + K + + Sbjct: 116 ITGTKGKTTTTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G V +E SS GL HR G + G FTN+ DHI + A + LL Sbjct: 176 EAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP---NEHKDFADYLRCKALL 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ I+ DA + + H + + + K + I+ + K Sbjct: 233 FKQCKVGIFNADAEHLDEILEGHTCEVETFGFSEKADL-RAENTKLVTGKGTLGIAYDVK 291 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +F LPG F VYN+L A +C G+ + + L++ V GR E V + Sbjct: 292 GLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDE- 349 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 350 FTLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTII 409 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P++I +I GI ++E +R EAI AI D++V+AGKGHE Sbjct: 410 TSDNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHED 469 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G+K + +I+EIL Sbjct: 470 YQEIK-GKKYPMDERVLIQEILE 491 >gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis 053442] gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis 053442] Length = 492 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 217/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPERVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] Length = 511 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 131/508 (25%), Positives = 222/508 (43%), Gaps = 26/508 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ + + EL+ + ++ EV DSR G +FV + G + D H F+ Sbjct: 1 MILRTWLNELDYELVRGS-------LDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN 116 P + G +V + ++ + + IL R+ L+L ++ +G Sbjct: 54 PDVLRAGVRVLVTERDIEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASK 113 Query: 117 ILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 ++ + T K ++ I + +G IG T T I+ TTP L ++ Sbjct: 114 MITIGVTGTKGKTTTTHMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQS 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + ++ G ++ +E SS G+ HR+DG+ G FTN+ DHI + A F + Sbjct: 174 FAKMAEAGCQYMIMEVSSQGIKMHRVDGLAFDYGIFTNISPDHIG--PDEHADFAEYLCC 231 Query: 234 FEELLPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LL ++ +D + KE++K R + + + + + Sbjct: 232 KSRLLSMCRIGLVNLNDGHFKEIVKDASCRLYTYCVKEDGETKADFEASNVRYVSRPDFV 291 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 V G + + +AA + + H + V GR E V Sbjct: 292 GTEFDVTGNLDMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIRVNGRMEIV 351 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T+SR + VDYAH + S+E +L +R R++VVFGCGG+R + +R MG+I L Sbjct: 352 YTSSR-CTVLVDYAHNAVSMESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRL 410 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD++I+T DN R E E I A+I I F+E +R +AIR++I D++ V Sbjct: 411 ADLSIITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMIAVI 470 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE + NG + +D ++I E + Sbjct: 471 GKGHEDYQEI-NGVRHHFLDREVIEETI 497 >gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] Length = 483 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 152/503 (30%), Positives = 243/503 (48%), Gaps = 34/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ R+ +I V+SDSR ++ G +FV I G + DGH + Sbjct: 1 MRLYELLDGLDA---------ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA AI+ A L++ +V +T + YG + + Sbjct: 52 VKAAEAGAAAILCERAIGLENE----------IVCHDTHYAYGIVCGNWYGNPARRLRLV 101 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V+ V+ I + +G + IG + I + TTP P+ L L+ + Sbjct: 102 GVTGTNGKTTVSYMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARM 161 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +E SSH LDQ RL G++ + FTNL +DH+DYH ++Y++AK +LF Sbjct: 162 ADAGCEYVVMECSSHALDQQRLAGLRFASVGFTNLTQDHLDYHGDMESYYHAKKKLFSM- 220 Query: 238 LPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 A + DDAY + + H S K + + + I + Sbjct: 221 ---CDAAAVNMDDAYGERLAAEVRHICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGK 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G P+PG+F V NA+ AA +C+A+G+ + L V GR E + T + Sbjct: 278 GAIARVRLPIPGDFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIEVLPTGT-DY 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + DYAH+ + LE I+ ++ GR++ +FGC G+RD+ KR M +I L+D I+T Sbjct: 337 VVIRDYAHSPDGLEKIITTMKKFARGRVVTLFGCAGNRDRTKRKKMAEIVARLSDFVILT 396 Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR ED +I + G+ + +R AI A+ K DVL++AGKGHE Sbjct: 397 SDNPRDEDEMQIIEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKGHED 456 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 ++ +GE + I+ E+L Sbjct: 457 YQVL-HGETICFDERQIVLELLE 478 >gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 496 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 221/474 (46%), Gaps = 20/474 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+AG IF+A G DG +IP AIA GA + + Q N P Sbjct: 26 LHSDSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQ---WNPEWNVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGK------HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + + + A+RLYG P I VTGT+GK+S+ ++ Q G + Sbjct: 83 QGIKDLKHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAI 142 Query: 147 IGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG +D TTP+P+ + L QG T ++E SSHGLDQ R++G+ Sbjct: 143 IGTVGNGFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQ 202 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHN 262 FTNL RDH+DYH T +AY ++ A+I +DD Y E++ K Sbjct: 203 TAVFTNLTRDHLDYHGTMEAYG--AIKSRLFYWRGLKHAVINSDDPYGAELIGRLKADRP 260 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + I + A + +V + L G F N G+ Sbjct: 261 DLAVYSYGFGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVL 320 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A G VL LEK+ GR + S + VDYAHT ++LE L ++ I Sbjct: 321 CADGHPLDKVLAALEKIRPATGRMD-CIIESGKPLVVVDYAHTPDALEKALATLQEIKPQ 379 Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I A+I+ +P Sbjct: 380 GAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPE 439 Query: 441 -EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI A++ D++++AGKGHET V G K D + + L Sbjct: 440 CVEADRKAAIGFAVKNAASDDIILIAGKGHETYQDVA-GVKHHFSDFETAQAAL 492 >gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis M50/1] Length = 516 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 139/523 (26%), Positives = 228/523 (43%), Gaps = 44/523 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ E + + I ++ S ++ G +FV I G DGH +I Sbjct: 1 MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105 A+ GA A+VV + ++ ++ V +TR+ L+ Sbjct: 54 MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113 Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL 162 ++ Y + I+ +TGT GK++ A I + +G + +G T + + Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP L + L+ + S G +E SS G+ R++GI G F N+ DHI Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273 + A+ + L ++ A I D + E + H S G + Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 + + ++ + + +FL +PG F V NAL A + I +V Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVK 350 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + L++ VPGR E V + VDYAH SL +L +R GR++V+FGCGG+ Sbjct: 351 DALQR-QTVPGRCENVRISD-KFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGN 408 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 R + +R MG+ A LAD I+T DNPR EDPE I +I GI G +I +R A+ Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 A + + D++V+AGKGHE + G + D +++++ Sbjct: 469 AYAFDHAREGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 510 >gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis 961-5945] gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis G2136] Length = 492 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 218/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TNL RDH+DYH T +AY ++ A+I DD Y E+ +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] Length = 488 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 224/467 (47%), Gaps = 16/467 (3%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR ++ G +FVA+ G+ G F PQA+ +G ++ + S +V Sbjct: 26 IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRG-----AAAVVAAPGTLPATLSQQNCVV 80 Query: 95 VDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ R+ L A +G + ++ VTGT+GK++V ++ QR G IG + Sbjct: 81 HDDPREALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIAN 140 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + LTTP L LS +++ GV V +E SSH L Q R G++ A TN Sbjct: 141 RWPGHEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVLTN 200 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + +DH+DYH+ ++YF AK LF E+ + D ++ Sbjct: 201 VSQDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHS 260 Query: 272 YQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + L + ++ + +G+ + PL G N + A +A+G Sbjct: 261 EKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALGFG 320 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A + VPGR E V N+ G I+VDYAHT ++LE +L+ + + R++VVF Sbjct: 321 PADAAVLSD-APPVPGRLERV-ENAAGLDIFVDYAHTPDALENVLQAMTALDGNRLLVVF 378 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNR 445 GCGGDRD+ KR MG+ AD+AI+T DNPR EDPE I A++ G P +E+ +R Sbjct: 379 GCGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRVVEESDR 438 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 AI A++ + D+LVV GKGHET + + S I +I Sbjct: 439 KAAIALALQEMVPGDILVVTGKGHETYQDIGGVRVEFSDIRAICEQI 485 >gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] Length = 492 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ LEK+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha275] Length = 492 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 215/468 (45%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + VTGT+GK+S+ ++ Q G + +G Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELVGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + L G F N L A G Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] Length = 1035 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 234/494 (47%), Gaps = 19/494 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI +L ++ + R I V DSR + G +FVA+ G + DGH ++ Sbjct: 1 MKLATLIQ----DLAELAAVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYL 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P I GA A+VV A +A ++V + L + A+R+ G+ E + + Sbjct: 57 PAVIDAGAAAVVVERAIEDPALAAR----VTQVIVPEGARALGVLAARMAGRPGERMRLV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ I + + IG S + TTP+ + L +AL + Sbjct: 113 GITGTNGKTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEM 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + TH +E SS L RL G + +FTN +DH+D H + AY AK RLF + Sbjct: 173 VAASCTHAVLEVSSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKERLFRDH 232 Query: 238 LPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 L + A+I DD + ++ +R + + Sbjct: 233 LAENGVAVIDVDDKAAPHMIAAAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEF 292 Query: 294 SVEGKDFDFLFPLP-GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + F P G + V N VA +C A+ + A + +E + VPGR E V N Sbjct: 293 ATPRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERVA-N 351 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G I VDYAHT ++L +L +R +T R++ VFGCGGDRD KRP MG A AD+ Sbjct: 352 DAGLDILVDYAHTPDALASVLAALRPLTQRRLLCVFGCGGDRDADKRPKMGAAAAAGADL 411 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +VT DNPRSE P I +I+ G+P F +R I A+ D++++AGKGHET Sbjct: 412 VVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVLIAGKGHET 471 Query: 472 VHIVTNGEKKMSVD 485 I+ + + D Sbjct: 472 YQILGD-DTVHFDD 484 Score = 86.9 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V D R + G ++VAI G + DGH F QA GA A++V + +D +A Sbjct: 522 SRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGACALMVERGRAPRD-AAGNALKL 580 Query: 91 PILVVDNTRKFLSLFASRLYGK 112 ++ VD+TR L A + Sbjct: 581 AVIEVDDTRLALGSVARWHRAR 602 >gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] Length = 487 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+ + AY Sbjct: 8 LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ V Q Sbjct: 64 EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A ++ R TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGERCCIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + FTNL RDH+DYH + +AY AK +LF + + DD + + + Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ S+ F++ ++ + + + PL G F + N L Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G +L L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+I G Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI I DV+++AGKGHE + +G + D + L Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 225/470 (47%), Gaps = 25/470 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +++DSR ++ +F+A G DG +I AIA+GA ++ S Q F Sbjct: 385 PVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDS----QGFDWKPEW 440 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + + + + AS+ Y E + VTGT+GK++V ++ Q + S Sbjct: 441 QVHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAV 500 Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + Q + TTP P+ L K L+ V V++E SSHGLDQ R++G+ Sbjct: 501 IGTLGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAFD 560 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+ RDH+DYH T +AY AK +LF+ A++ ADD + +++ G Sbjct: 561 VAVLTNITRDHLDYHLTMEAYQAAKRKLFDWQTLSA--AVVNADDPFGLALIEDLRKQGK 618 Query: 266 RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +VLS G + + V ++ + D G+F VYNAL + Sbjct: 619 KVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLV 678 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + L+ + L V GR + G + VDYAHT ++LE L +R+ G++ Sbjct: 679 NEVALPAALQAVSGLVPVAGRMQMFGGGDLPL-VVVDYAHTPDALEKALHTLRSQARGKL 737 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKG 443 VFGCGGDRD GKR MG+IA +LAD I+T+DNPRSE+P I A I G+ + Sbjct: 738 ACVFGCGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGMAREATVET 797 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI A+ KGHE + G + D D ++ L Sbjct: 798 DRAKAIALAVS------------KGHEDYQEIQ-GIRYPFSDADWVQNAL 834 >gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] Length = 492 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 215/468 (45%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+ GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 149/507 (29%), Positives = 231/507 (45%), Gaps = 34/507 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L D++ + I ++ P + + V DSR + G IFVA G + G FIP Sbjct: 19 RLGDVLRE-----IPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIP 73 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 +A+A+GA A++V+ SA + V + L+ A+ +YG ++ Sbjct: 74 EAVARGARAVIVAR------GSAADTLGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVG 127 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT+GK++ A VQ R G + +G T+P LA+ + + Sbjct: 128 ITGTNGKTTTAHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAMV 187 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++G TH+ +E SS L R+D ++ FTNL +DH+DYH T +AY AK RLF + Sbjct: 188 ARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFVD-- 245 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------------GYQGKFIHLKKVCAIH 286 A+I DD + +++++ G + G I ++ Sbjct: 246 LGPGAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHSA 305 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + + L G N L A + +G D L V GR Sbjct: 306 SGTFIRARTPAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGRL 365 Query: 347 EFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + + VDYAHT ++L +L ++R + GR++ VFGCGGDRD KRP MG+ Sbjct: 366 ERCDAPGADDVIVLVDYAHTPDALARVLASVRALGGGRVLCVFGCGGDRDPLKRPQMGEA 425 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 +AD+AIVT+DNPRSEDP I I+ G + + +R AI A+ DV Sbjct: 426 VGRVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGDV 485 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDI 488 +++AGKGHE I+ G D D Sbjct: 486 VLIAGKGHEPYQIIG-GVTLPFDDRDE 511 >gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] Length = 532 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 156/476 (32%), Positives = 226/476 (47%), Gaps = 18/476 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + VS DSR I+ G ++ A+ G G F+ A A GA A++ A + +A Sbjct: 64 EVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTA-- 121 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+LVV + R L A+ +YG+ + +L +TGT+GK++ + + + +R G ++ Sbjct: 122 --GLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPAA 179 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + I + +TTP L + + QGV ++E SSH L + R+DG + Sbjct: 180 LVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARY 239 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H+T + YF AK LF + D + Sbjct: 240 SVAGFTNLSQDHLDFHKTFEQYFAAKASLFTPERCDLAVV---NIDDKYGRRLAAQTVVP 296 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +S + + H + I G+ LPG+F V NAL+A + Sbjct: 297 LVTVSTTRDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDFNVANALLAVAMLRQ 356 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + + + + L V PGR E G + VD+AHT +++E+ L+ R T GR+ Sbjct: 357 VDVPADEIAAGLRTARV-PGRME-TFLRPDGLAVIVDFAHTPDAVELALRAARGATKGRL 414 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------G 438 V GCGGDRD GKRP MG A AD IVTDDNPR EDP IRA + G Sbjct: 415 YAVVGCGGDRDPGKRPAMGAAAARAADTVIVTDDNPRGEDPATIRAAAVEGARAAVPDVE 474 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E G+R AIRTAIE+ D +VV GKGHET V G D +RE+L Sbjct: 475 LREVGDRRAAIRTAIELAGPGDTVVVLGKGHETGQDVG-GVIHPFDDRQTVRELLE 529 >gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] Length = 506 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 137/502 (27%), Positives = 229/502 (45%), Gaps = 19/502 (3%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +++ + I + + I +S DSR+I+ G F+ I G++ DGHLF+ A Sbjct: 14 NMLAGELLSYIK-VKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAK 72 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA + S + + + P++ V +T K ++L ++ LYGK E ++ +TG Sbjct: 73 KNGAGLFIASKDIADKAG------DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITG 126 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK++ + + I + L + IG I + TTP L L ++++ Sbjct: 127 TNGKTTTSYLINHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEK 186 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240 +E SSH L R+ G FTNL +H+D H+T Y + K LF +L Sbjct: 187 CDACVMEVSSHALALDRVIGCDFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNL 246 Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + D E K A + + + K+ K + + G Sbjct: 247 KNGKLKTAVLNIDDKYSEEYKAHTPAEVITYGIDDKTADFYADKIFFDDWKMRFDLHFLG 306 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F VYN L A A GI +E L+ V GR E V T+ + + Sbjct: 307 DVYKVETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHTD-KNYK 365 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT 416 I +D+AHT + L +L+ + + RII + G G+RD RP +G+IAL+ +D + T Sbjct: 366 IIIDFAHTPDGLMKVLETLNKVPHNRIITLIGHSGGNRDSSMRPDLGRIALENSDEVVFT 425 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+E E I ++ + +R EAI A + + D++++AGKG E + Sbjct: 426 ADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKGAEPYQV 485 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + + E + + ++EILG I Sbjct: 486 IGD-EYLPYSEIETVKEILGRI 506 >gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sp. M21] gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21] Length = 505 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 161/523 (30%), Positives = 247/523 (47%), Gaps = 48/523 (9%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL L+ + PE+ +I + DSR + G +F A+ G K DG F Sbjct: 1 MKLAQLLNCLEAPEVAGDAG--------IEIESLCYDSRKVAPGALFFALRGVKSDGTEF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + A+ GA AIV + ++VV + R +SL A+ YG + Sbjct: 53 VEAAVKGGAVAIVADRPCACP--------GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ V+ I +++G+ S +G S ++ TTP + L + L Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRE 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L G +E SSH L+Q R+DG FTNL RDH+DYH ++YF +K+RLF + Sbjct: 165 LVDLGARGAVMEVSSHSLEQRRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTD 224 Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL A++ DD + + ++A G + + + + Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKASAPVLTYSMTGKADI--SVAEAEFTVDGIRC 282 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + + L G F +YN L A G +A+G + +E VPGR E V Sbjct: 283 RLDTPVGEISLVSELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-E 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDYAHT ++LE +L + + + RII +FGCGGDRD+GKRP+MG+IA +D Sbjct: 342 SEEGITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSD 401 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452 +A++T DNPR+E+P I ++ GI GF +R AIR A Sbjct: 402 LAVITSDNPRTEEPSAILDDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRAA 461 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + D++++AGKGHE IV EK D + L L Sbjct: 462 LLAARPGDIVILAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503 >gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris CGA009] gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rhodopseudomonas palustris CGA009] Length = 485 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 205/491 (41%), Positives = 278/491 (56%), Gaps = 21/491 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+D+ + + + I ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDIF--------SAEADIAAPAADLTIGGLAVDSRAVKPGDLFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ + + + P + + N R L+ A+R Y + PE I AV Sbjct: 53 A-------AAVAAGAVAVAGEHRPEGDLSVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G ++ IG + + LTTP PI L ++L ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T Y NAK+RLF L+ Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296 A+I AD S +V++ A G R++++G G I L QQ+T+ Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHA 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK PL GEFQ+ NALVAAGL I G D+A LE L PGR + VG G Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVG-ARNGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD+ I+T Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRA I+ PG E G+R EAIRTAI L D LV+AGKGHET IV Sbjct: 405 DDNPRSEDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464 Query: 477 NGEKKMSVDCD 487 + D D Sbjct: 465 D-RVLHFSDHD 474 >gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] Length = 485 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 210/491 (42%), Positives = 277/491 (56%), Gaps = 21/491 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL + +R I ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDLFSAETE--------IAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI + + P + + N R L+ A+R Y + PE I AV Sbjct: 53 A-------AAIAAGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G +S IG + + LTTP PI L ++L ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T Y NAK+RLF L+ Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQ 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296 A+I AD S EV++ A G R++++G G I L Q +T++ Sbjct: 226 DGGAAVIAADHDCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTVAHA 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + PL GEFQ+ NALVAAGL I G DSA LE L PGR + VG RG Sbjct: 286 GRRYSIKLPLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVG-AHRGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD IVT Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAEHADTVIVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRA I+ PG G+R EAIRTAI L D LV+AGKGHET IV Sbjct: 405 DDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464 Query: 477 NGEKKMSVDCD 487 + D D Sbjct: 465 D-RVLPFSDHD 474 >gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 487 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+ + AY Sbjct: 8 LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ V Q Sbjct: 64 EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A ++ R TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + FTNL RDH+DYH + +AY AK +LF + + DD + + + Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ S+ F++ ++ + + + PL G F + N L Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G +L L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+I G Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI I DV+++AGKGHE + +G + D + L Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479 >gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] Length = 487 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 233/480 (48%), Gaps = 14/480 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+ + AY Sbjct: 8 LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ V Q Sbjct: 64 EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A ++ R TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + FTNL RDH+DYH + +AY AK +LF + + DD + + + Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVVNL--DDDFGRRL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S+ F++ ++ + + + PL G F + N L Sbjct: 242 AGEEQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G +L L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+I G Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI I DV+++AGKGHE + +G + D + L Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479 >gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA1] gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA1] gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA4] gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA1] gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA3] gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL067PA1] gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA1] gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA2] gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA1] gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA3] gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA2] gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA1] gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA2] Length = 499 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + +TGT+GK++ A V+ + +G I Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483 >gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium intracellulare ATCC 13950] Length = 514 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 150/497 (30%), Positives = 225/497 (45%), Gaps = 19/497 (3%) Query: 11 FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P L + P + V+ ++ ++ G +F A+ G+ G + AI +G Sbjct: 17 LPALAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERG 76 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A A++ + + + + + P+LV + R L A+ +YG E + + VTGTSG Sbjct: 77 AVAVLTDAGGVAEMGA--LGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSG 134 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ + +G ++ IG A + LTTP L L+ ++ QGV Sbjct: 135 KTTTTYLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDT 194 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V +E SSH L R+DG + G FTNL RDH+D+H T YF AK LF+ P + Sbjct: 195 VVMEVSSHALTLGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARR 254 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303 ++ D + M V + G + Q+ T Sbjct: 255 VVVCVDDDAGRAMAARAGDAITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGARHQLG 314 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 LPG + V N LVA + A+G+ L + V PGR E + VDYA Sbjct: 315 VRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQARV-PGRMEEIDAGQ-DFLALVDYA 372 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +L +L + R+ VVFG GG+RD GKR MG A +LAD+ +VTDDNPR E Sbjct: 373 HKPGALRAVLTTLAR-PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGE 431 Query: 424 DPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 432 DPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKGHETGQS-AG 490 Query: 478 GEKKMSVDCDIIREILG 494 G + D + + L Sbjct: 491 GHTRPFDDRVELAQALR 507 >gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA1] gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA2] gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA1] gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL086PA1] gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA1] gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA2] gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA1] gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL092PA1] Length = 499 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + +TGT+GK++ A V+ + +G I Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483 >gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter sp. K31] gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31] Length = 485 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 201/477 (42%), Positives = 277/477 (58%), Gaps = 16/477 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR ++ G++F A+ G+K DG FI AIA S A ++ Sbjct: 16 DPVITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIA--------SGAAAILAPDDVE 67 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++ + R+ +L A++ + + P +AVTGT+GK+SVA F +QI R G + Sbjct: 68 GLSVPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAAS 127 Query: 147 IGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G LTTP +A+ ++ L+ GVTH++VEASSHG+DQ RL Sbjct: 128 MGTLGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRL 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG++L A FTN +DH+DYH T Y AK+RLFE LLP+ A++ AD Sbjct: 188 DGVRLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASA 247 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A +G +LSVG++G+ + L + Q++ I+ + + FD L PL G+FQ N LVAA Sbjct: 248 AVTSGQTILSVGHEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAA 307 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 GL +A G D + LE L GR + VGT +RGG YVDYAHT + LE +L +R Sbjct: 308 GLVLATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYVDYAHTPDGLETVLAALRPH 367 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 T G++IVVFG GGDRD+GKRP+MG+IA LAD+AIVTDDNPRSE+P IRA I+ PG Sbjct: 368 TRGKLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSEEPASIRAAILAAAPGA 427 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 E G+R EAIR +L DVLVVAGKGHE +V G D + L + Sbjct: 428 QEYGDRREAIRAGAALLADGDVLVVAGKGHEQGQLVA-GVNHPFDDVTETAQALEAV 483 >gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 515 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 135/522 (25%), Positives = 220/522 (42%), Gaps = 37/522 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D + E I + +++EV DSR G +FV + G + D H F+ Sbjct: 1 MVLRDWLKGLEYECIRGS-------LDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSN--------TPILVVDNTRKFLSLFASRLYGK 112 P + G +V + A +L + R L+L ++ +G Sbjct: 54 PDVLKAGVRVLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGY 113 Query: 113 HPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169 ++ + T K ++ I + +G IG T T I TTP Sbjct: 114 PATKMVTIGVTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQ 173 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L +A + ++ G ++ +E SS G+ HR+DGI G FTN+ DHI + A F Sbjct: 174 LHQAFAQMADSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIG--PDEHADFAE 231 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLK 280 + LL ++ +D++ ++++K A G G Sbjct: 232 YLYCKSRLLNMCRIGLVNRNDSHFEDIIKDADCELYTYSVTEERGGLHGSGESGADFTAS 291 Query: 281 KVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 V + V+G+ + + +AA + + + Sbjct: 292 DVRYVSQPDFVGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALE 351 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V T++R + VDYAH + S+E +L +R R++VVFGCGG+R + + Sbjct: 352 HIRVNGRMEIVHTSAR-CTVLVDYAHNAVSMESLLTTLRQYHPKRLVVVFGCGGNRSKDR 410 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454 R MG+I LAD++IVT DN R E E I A+I I F+E +R EAI +I Sbjct: 411 RYTMGEIGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSIS 470 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 D++ V GKGHE + NG + +D ++I E++G + Sbjct: 471 HAMPGDMIAVIGKGHEDYQEI-NGVRHHFLDREVIEEVVGKL 511 >gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] Length = 484 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 226/482 (46%), Gaps = 27/482 (5%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + + V+ ++ ++ G IFV + G + DGH + +++GA IV Sbjct: 15 KAGTQNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCGK 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139 LV DNTR L+ + YGK E + LAVTGT+GK++ A FV+ I Sbjct: 75 ----------QLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTT 124 Query: 140 SGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G +G + +Q T P L L + S G + +EASS L Sbjct: 125 LGKKCGCVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQAL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ+R+ ++ FTNL RDH+DYH T + YF AK R+F A+I DD Y K Sbjct: 185 DQYRIGDERIAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTM----CKTAVINIDDEYGK 240 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + + + + G ++ A + E + G + V N Sbjct: 241 RLAQEFSDIAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQN 300 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A + A+G D + L L V GR V + DYAHT ++L +L Sbjct: 301 SLCAIAMVTALGFDMTECAKALSDLDGVDGRMNVVYRG--DFTVITDYAHTDDALIKVLS 358 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ +T GR+I VFG GDRD+ KRP+M K A D ADI ++T DNP E+P++I E++ Sbjct: 359 TLKPLTKGRLICVFGAAGDRDKEKRPMMAKAAEDNADILVITSDNPAHENPDEIIREVMT 418 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 GI +R EAI A++ K DV+ + GKGHET I+ + E + +I+++ Sbjct: 419 GISGKKPCRCITDRREAIAYALDTARKDDVIALCGKGHETYQIIGD-EYLPFSEKEIVKD 477 Query: 492 IL 493 I+ Sbjct: 478 IM 479 >gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] Length = 484 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 227/502 (45%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + +++ ++++++ DSR +Q +FV I G DGH FI Sbjct: 1 MKLKQLLNEMNYQVL-------QGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 Q I +GA IVV Q+ + V R L+L + + + + Sbjct: 54 DQVINRGARVIVVEHDVPFQE-------GITYIRVKEARLALALLSCAFFEHPSRQMTVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ + ++ I +++ IG +I + Q + TTP L + + + Sbjct: 107 GITGTKGKTTTSYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SS GL +R+ GI G FTNL DHI H + + +++ Sbjct: 167 VECGCEYCVMEVSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEH---EHHSFEHYMACKKM 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + I+ D E M + + S+ Q + + Sbjct: 224 LFQMCKVGIFNRDDEHYEDMIKGAKCDIKTYSLHQQSDLKASQIHLSQGTGTLGVSFQTS 283 Query: 298 K--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D +F +PG F VYN+LVA LC +GI++ + E L+K+ V GR E V + Sbjct: 284 GLIDANFETDIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKV-RVRGRVEIVPVG-QK 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + S E IL+ I RI+ V+G GG RD +R +G+I +I+ Sbjct: 342 YTVMIDYAHNALSFESILQTIMDYQPHRILCVYGAGGHRDVKRRYDVGEIVAKYKAFSIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+ +I +I+ GI ++ +R EAI A+E DV++ GKGHE Sbjct: 402 TADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVILCLGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 I+ N E + II + Sbjct: 462 YQILQN-EPLPFSEKQIIEDYF 482 >gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 491 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 149/502 (29%), Positives = 240/502 (47%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L+Y ++++ ++ I D+ + G ++VA+ G++ G Sbjct: 1 MKLSELLYGHDHQVLHG-------DQDTPITSGPCLDADRVTPGSLYVALPGHRAGGPEA 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENI 117 + +A+A+GA A++V A + ++ V + R +L ++R +G+ ++ Sbjct: 54 LGEALARGAAAVLVEGPDPAGHRPA--DTGACVVRVPDARIATALVSARYHGEPGRAMDV 111 Query: 118 LAVTGTSGKSSVASFVQQICQR-SGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +AVTGT+GK+SV+S + + G IG + L+TP L Sbjct: 112 VAVTGTNGKTSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + +G V +EA+S GL HR+DG + G FTNL +DH+D H T ++Y AK Sbjct: 172 LLACMRDRGGDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAK-- 229 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD + G + + + Sbjct: 230 -MLLFQGMCRRAVVNADDPVGAAIPALMP--GAVTTYAVDADADYRATDLVVDSSGTRFV 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P+PG F V NAL A C +G D +++ L+++ +PGRFE G Sbjct: 287 LHHDGRKYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHFG-T 345 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAH+ +SL+ +L IR R++ VFGCGGDRD KR MG+IA +D+ Sbjct: 346 PEGVSVIVDYAHSPDSLDKVLCTIRGFAPRRVLTVFGCGGDRDTTKRARMGEIAATYSDL 405 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T DNPR EDPE I ++ GI G+R AI A+ DV++VAGKG Sbjct: 406 CVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIR 490 ET V G+ D ++R Sbjct: 466 SETHQSVG-GDLVPFDDMTVVR 486 >gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2] Length = 485 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+ + AY Sbjct: 6 LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 61 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ V Q Sbjct: 62 EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 121 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A ++ R TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 122 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 181 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + FTNL RDH+DYH + +AY AK +LF + + DD + + + Sbjct: 182 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 239 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ S+ F++ ++ + + + PL G F + N L Sbjct: 240 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G +L L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 300 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 358 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+I G Sbjct: 359 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 418 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI I DV+++AGKGHE + +G + D + L Sbjct: 419 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 477 >gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAb1] gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] Length = 487 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+ + AY Sbjct: 8 LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ V Q Sbjct: 64 EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A ++ R TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + FTNL RDH+DYH + +AY AK +LF + + DD + + + Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ S+ F++ ++ + + + PL G F + N L Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G +L L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+I G Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI I DV+++AGKGHE + +G + D + L Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479 >gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 522 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 157/511 (30%), Positives = 230/511 (45%), Gaps = 30/511 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +LI L R + + ++H++ G +F A+ G + G F Sbjct: 5 QLAELIGARI------LRAPGQGPSGRPVTGATLRAQHVRPGDLFAALPGTRVHGADFAA 58 Query: 62 QAIAQGAEAIVVSSAY----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115 A+ GA A++ A L D +LV D+ R L A+++YG+ + Sbjct: 59 TALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQL 118 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174 IL VTGTSGK++ ++ +G ++ +G T + D+ TTP L L Sbjct: 119 RILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRIAGERLDSAFTTPEAPDLQALL 178 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + GVTHV +E SSH L R+ G + G FTNL +DH+D+H+ YF AK LF Sbjct: 179 AVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLF 238 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + E + K V + G + ++ Sbjct: 239 DGRSEHEVVCT------DTDWGRKLVKPGTITVSTTGDASWTATDVEAFPTGEQEFTAHG 292 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G LPG F + NAL+A G+ A + + + L ++ V PGR E V Sbjct: 293 PGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIERGLAEVDV-PGRMERVALGQ- 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDY+H ++ +L R GR+IVV GCGGDRD KRP+MG+ A + + I Sbjct: 351 DFTAVVDYSHKPGAVSAVLDAARAQAEGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLI 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 VTDDNPRSEDP IRA ++ G IE+G+R EAI A+ + D++VVAG Sbjct: 411 VTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDRREAIAEAVARASSGDIVVVAG 470 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 KGHET V G D + + L L Sbjct: 471 KGHETGQEVA-GVVHPFSDREELAAALRRRL 500 >gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 495 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 217/473 (45%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ + DSR + G FVAI G G F+ QA A GA A++ Sbjct: 19 DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAPNGMPVPAD 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ ++ VTGT+GK+S + Q G + Sbjct: 79 A-----IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDAFGRTLFASLDPALR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + HN ++++G+ PL G F V N L AG Sbjct: 254 AIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 ALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPRSED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAVIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485 >gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS) gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 497 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 236/504 (46%), Gaps = 27/504 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ + + I+ + DSR + G +F+A+ G K+DG FI Q Sbjct: 6 LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI + A AI+ + + N ++ + +SL A+R Y + + I+ + Sbjct: 55 AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V + Q G + +G + Q TT SPI++ LS + Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V++E SSHGL QHR+ + FTNL +DH+DYH+ + Y +AK LF Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLFS--TH 232 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 K I+ ADD Y K +K+ N Y K+I+ + +N +T Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITF 292 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L G F V N L++ + +G + ++ EK+ V GR E Sbjct: 293 ESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVK 352 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +DYAHT ++L+ L I + I +FGCGG+RDQ KRPIMG IA ++D Sbjct: 353 KPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKV 411 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T+DNPR+E +KI +I++G + +R +AI A ++++AGKGHE Sbjct: 412 IITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHE 471 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 I+ N D I+ +LG Sbjct: 472 EKQIIQNRSINY-SDKKIVLNLLG 494 >gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 227/502 (45%), Gaps = 20/502 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + K+ +L+ + +++++ DSR + +F I G DGHLF +A Sbjct: 1 MFAKELADLL-VIKRVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 GA V S Q ++P++ V + + ++LFA+ YG E N++ VTGT Sbjct: 60 LGANVFVASKPIKEQVG------DSPVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGT 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++V V + + G + IG I + R TTP + + + L + G Sbjct: 114 NGKTTVTHMVDYLLEELGKPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGG 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239 +E SSH L R+ GI FTNL +H+D H+T + Y +AK Sbjct: 174 DTCIMEVSSHALQLGRVWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSK 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 E P + + + + + I ++ + ++V G+ Sbjct: 234 NEKPRVAILNRDQEYFGQFAYSTSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEK 293 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P+ G F VYN L A G+ + GI +E + K V GR + + + ++ Sbjct: 294 IPVMVPMIGLFNVYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQKG-QPFQVI 352 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDD 418 +D+AHT + LE +L + + R+I + G G+RD RP +G+IA + +D I+T D Sbjct: 353 IDFAHTPDGLENVLSTLEEVKINRVITIMGHSGGNRDSSMRPELGEIAFEKSDYVILTAD 412 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR E EKI +EI+ G + +R +AI A+E+ + D+L+ AGKG E + Sbjct: 413 NPRQESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKGVEPYQV 472 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + E + + + + L + Sbjct: 473 IGE-EYIPYNEVETVVQALEKL 493 >gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] Length = 499 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 136/481 (28%), Positives = 222/481 (46%), Gaps = 30/481 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + S DSR ++ G IF+A+ K F A+ GA A++ + + + Sbjct: 20 QPFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVTNE- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQR 139 V + R + + + P +AVTGT+GK++++ + ++ Sbjct: 77 ---------WVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAELISS 127 Query: 140 SGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G +G T + TT + L AL + G V++EASSHGL+Q R Sbjct: 128 QGKGCAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGR 187 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L+G L ++NL RDH+DYH T +AY AK RLF+ K + A Sbjct: 188 LNGCDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKAVVINLDDAYAQLMLDAA 247 Query: 259 RAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A+ + ++L+ H+ + + T+ + PL G F V N L Sbjct: 248 KANPSQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLL 307 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + G D A ++E + +L PGR + + VDYAHT ++L +L + Sbjct: 308 ASLIAAECAGFDLADLVEFVPQLQGAPGRMQVIQDA--NRLFVVDYAHTPDALIQVLTTL 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + +G++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+ED +I A++ G+ Sbjct: 366 KRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFADMKQGM 425 Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 E +R EAI+ + D++V+AGKGHE + +G + D ++ Sbjct: 426 NFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVVEVQSA 484 Query: 493 L 493 + Sbjct: 485 I 485 >gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] Length = 499 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 222/489 (45%), Gaps = 20/489 (4%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + ++ DSR + G +F+ + G + DG F PQA+A GA A+++ + Sbjct: 13 VPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAAAVLIGEQAAAS 72 Query: 81 DFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 A +LV+ + + AS + + + + VTGT+GK++ ++ + Sbjct: 73 HPPAF---GDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGVTGTNGKTTTTHLIEHLS 129 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q G + G + + TT L L+ G ++E SSH LDQ Sbjct: 130 QACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAMEVSSHALDQ 189 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSK 254 HR+ G + FTNL +DH+DYH + +AYF A ++ L+ + A++ DD + + Sbjct: 190 HRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRAVVNTDDPWGR 249 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ R + + + + + F PL G F + N Sbjct: 250 QLADRLGERCWSSSLETHADLTM--GDLRMTSAGVDGLLVTPLGEGRFHSPLVGRFNLMN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNSL 369 + A G + G+ L+L + VPGR E + VDYAHT + L Sbjct: 308 LMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPSVIVDYAHTPDGL 367 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L R T GR++ +FGCGGDRD+GKRP M IA LAD ++T DNPR+E+P +I Sbjct: 368 RNALLASRPFTKGRLVCLFGCGGDRDRGKRPQMASIAASLADRVVITSDNPRTENPNQIL 427 Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I+ G+P F NR AI AI D+L++AGKGHE I+ G K D Sbjct: 428 EDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKGHEDYQILDIG-KIHFDDR 486 Query: 487 DIIREILGL 495 + + L L Sbjct: 487 EEAEKALRL 495 >gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] Length = 497 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 137/500 (27%), Positives = 238/500 (47%), Gaps = 22/500 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI ++ S P + ++ I +S++S +++ +F+ G+K D H Sbjct: 1 MKLGKLIETIEKFVVK--SNIPPELIDKDIEHISNNSNNLKENTLFICRKGSKFDSHTIA 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + +G +V I + P + V ++R + A+ Y ++++ Sbjct: 59 ERLYNEGMVIALV--------TEEEINTKLPHVQVYDSRLAEAYLAAEFYSHPYQHLITF 110 Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT+GK++ A I Q+ GL+ G + I TTP I + +S Sbjct: 111 GVTGTNGKTTCAHLFHHIMQQFGLNGSLSGTVLNDILGDKFYVHNTTPDAITIMDNMSKT 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++ S+E SSH LDQ R++ I+ TN+ RDH+DYH T + Y N+K+ LF+ L Sbjct: 171 HKNGGSYYSMEVSSHSLDQGRVETIRFDIAGLTNITRDHLDYHPTFEHYVNSKLHLFDLL 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 I + +++ V ++ + + N + Sbjct: 231 KKDGIAVI----NEEYVQLLNGKKVPNLVTFGVNENAQY-KISDITTGWNGTNFILRTPY 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + GE+ +N + + IG + V+ ++ V GRFE + R G Sbjct: 286 GTKKVYTQMIGEYNAFNVTLVLAGLVEIGYEIDEVISYISSFRGVDGRFEPIPEARRLGI 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +D+AH+ ++LE ++ + R + GR+IVV+G GG D+GKRP+M ++ LADIAI+T Sbjct: 346 EVVIDFAHSPDALEKVISSARKLAKGRVIVVYGAGGQADKGKRPMMAEVVTRLADIAILT 405 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR E+PE+I E+ G+ + +R EAI TAI + N+ DV+++ G+GHE Sbjct: 406 TDDPRGENPEEIINEVEKGVRPNSLSLTVLDRKEAIDTAITLANRGDVVLITGRGHEPYQ 465 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I ++ K D D+ +I+ Sbjct: 466 IFSDTLKIPFKDRDVALDII 485 >gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 498 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 140/496 (28%), Positives = 232/496 (46%), Gaps = 17/496 (3%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L LS + ++ IN + DSR ++ IF+A+ G K+DGH FI +A+++ A+ Sbjct: 4 NNLKYFLSPWIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + Q +N PI+ K LS + R Y + ++ +TGT+GK++V Sbjct: 64 LSEVSERKQHGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTV 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +G + TT S I + L + ++ + ++E Sbjct: 124 TQLINQWSELLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSV-TIE 182 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R+ I A FTNL +DH+DYH+ + Y AK LF + + I+ A Sbjct: 183 VSSHGLVQNRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHT--VNKIILNA 240 Query: 249 DDAYSKEVMKRAHNAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 +D Y++ +K+ N Y K+++ + K V Sbjct: 241 NDKYAQNWLKKFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSWGHGIL 300 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F + N L+A + + + +++ ++ + GR + + +DY Sbjct: 301 STYLIGTFNIKNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPICIIDY 360 Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 AHT ++LE L I+ +I +FGCGG+RD+ KRP+MG+IA +A+ ++T+DNPR Sbjct: 361 AHTPDALEKSLNAIKIQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIANKVVITNDNPR 420 Query: 422 SEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 ED KI EII G I NR +AI N D++ +AGKGHE I+ + Sbjct: 421 HEDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQIIGDQ 480 Query: 479 EKKMSVDCDIIREILG 494 D +I+ +L Sbjct: 481 YTS-HSDQEIVLNLLE 495 >gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 499 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 228/473 (48%), Gaps = 41/473 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ D R I+AG +F A+ G DG F +A+ +GA A++ + + Sbjct: 51 VTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTA--------GQPVAVG 102 Query: 90 TPILVVD--NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P LVV + R + A R++G +++ VTGT+GK++ S V Q+ +R G Sbjct: 103 VPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLGEGVG 162 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G +RLTTP LA+ L+ G V++E SS + R++G+ + Sbjct: 163 VLGTL--------WSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAMERIEGLHVR 214 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTNL +DH+D+H + + YF AK RLFE DD + + Sbjct: 215 VGVFTNLSQDHLDFHGSMEDYFAAKARLFEPERTAIGVIN--VDDPWGARLAASVRVPVV 272 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V I + N + + L GE + N L+A + + Sbjct: 273 PVSISAVTDIEIDAAGIRFRRNGR-----------WYRSRLVGEHNLRNILLAVSVLEQV 321 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383 G D L+ L ++ GR + + + VDYAH+ ++L +L+ R + GR Sbjct: 322 GFDPDLLRGVLGEVESPRGRMQRILGPRG--LVVVDYAHSPDALAAVLRAARLLVGPRGR 379 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFI 440 ++VVFG GG+RDQ KRP+MG +A LAD+AIVT DNPRSEDP I A+I+ G G Sbjct: 380 LLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAAIAAQIVAGWRDRRGVR 439 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI A+ M+ DVLVVAGKGHE V ++ +G D D++ L Sbjct: 440 VVLDRRAAIEEAVAMMAPGDVLVVAGKGHERVQVI-DGVATPFDDIDVVHAAL 491 >gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 492 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 156/504 (30%), Positives = 256/504 (50%), Gaps = 25/504 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ DF + I+ ++ +S+ ++ +F A+ G K DGH FI Sbjct: 1 MILKELLRSDFN---------VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI +GA+A+V + F + ++ + V+++R LS +S+ YG E I+ Sbjct: 52 EEAIKKGAKAVVYETG----HFMPSEYADVTWIGVNDSRDALSWISSKFYGNPSERLKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 +TGT+GK++ + +++I +R + IG + + TTP + L + Sbjct: 108 GITGTNGKTTTSYLIREILKRYDKKTGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV +V E SSH L R+D K FTNL RDH+D+H+ + YFNAK RLF EL Sbjct: 168 LVKGVEYVITEVSSHALALKRVDYTKFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTEL 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L E A+I DD Y + + ++ + Q + + Sbjct: 228 LKNEGVAVINFDDVYGRRLAEQLNTKKITYSIENPQADIYVKNYRLNFKETEINLHIKKE 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ L G +YN + A + +A+ I ++ + H GRFE V + Sbjct: 288 KELVVKTHLLGIPNIYNVISAVSVAVALNIPFDIIESAISDAHSPDGRFERV-DEGQDFL 346 Query: 358 IYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 ++VDYAH+ ++LE +L ++R + +G+I+ VFGCGG+RD+GKRP MGKIA +L+D Sbjct: 347 VFVDYAHSPDALERLLISVRKLKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSDY 406 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPR E+P +I EI GI +I +R ++ ++ K D+L+VAGKGHE Sbjct: 407 VILTSDNPRWEEPREIIKEIEEGILKDNYIVVPDRTMSLYIGTKICKKGDILIVAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G++ D +I+ + L Sbjct: 467 DYQEIK-GKRYPFSDREILVKALR 489 >gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prosthecochloris vibrioformis DSM 265] gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 159/478 (33%), Positives = 240/478 (50%), Gaps = 23/478 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +SSDSR I+ G +FVA+ G + DGH F+ A+++GA A++ + + Sbjct: 32 ISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICE-----EFPGGDVPPGVCF 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + R L+ A LYG E ++ V+GT+GK++ A + + +G+ IG Sbjct: 87 IKAPDARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGYIGTG 146 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + I TTP L + L + +G V++E SSH L R+ G++ F Sbjct: 147 RAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHGVRFRVAVF 206 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265 TNL DH+D+H + +AY +AK RLF + L E A+ DD + + + A C Sbjct: 207 TNLTVDHLDFHGSMEAYASAKQRLFRQ-LLPEGRAVFNMDDPRAPFMAEGLPPASCSGCS 265 Query: 266 -----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R G++ + + +S FD LPG F V NAL+AA Sbjct: 266 LSGVERRADRSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPGRFNVMNALLAAA 325 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 C A+G+ L V GR E V R VDYAHT ++L+ +L+ + + Sbjct: 326 TCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGRVRAIVDYAHTPDALQRVLQTLARLK 385 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 GR+ VVFGCGGDRD KRP+MG+IA ++AD+ I+T DNPRSEDPE+I +I G+ Sbjct: 386 PAGGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVILTSDNPRSEDPERILDDIEQGMSC 445 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 G +R AI TA+ L + D+L+VAGKG E+ + G++ D + + LG Sbjct: 446 IGHRRIADRGTAISTAVAELGELDILLVAGKGRESYQE-SMGKRVFFSDREFLLNSLG 502 >gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 153/497 (30%), Positives = 232/497 (46%), Gaps = 16/497 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + + +P +R+ +I V+ ++ +Q G +F A+ G+ G +AI + Sbjct: 22 LAAQTGAVPDGAADYPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIER 81 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ + + ++ P+LV R L A+ +YG+ E ++ +TGTS Sbjct: 82 GAVAVLTDADGVAAMGA--HAASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTS 139 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + G + IG A + LTTP L L+ +S +GV Sbjct: 140 GKTTTTYLVEAGLRAGGRVAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVD 199 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G FTNL RDH+D+H T + YF AK LF+ + Sbjct: 200 TVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAG 259 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302 ++ D + M V + + + V Q+ T Sbjct: 260 TVVVCVDDDAGRAMAERAGDAITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGVQHRV 319 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N L+A + +IG+ L + V PGR E V VDY Sbjct: 320 RIGLPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARV-PGRLEQVDRGQ-DFLALVDY 377 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + + R+ VVFG GG+RD GKR MG +A +LAD+ +VTDDNPR Sbjct: 378 AHKPGALRAVLTTLTS-PDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRG 436 Query: 423 EDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV++VAGKGHET Sbjct: 437 EDPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKGHETGQ-RG 495 Query: 477 NGEKKMSVDCDIIREIL 493 GE + D + E L Sbjct: 496 AGEVRPFDDRVELAEAL 512 >gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] Length = 516 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 143/482 (29%), Positives = 238/482 (49%), Gaps = 18/482 (3%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +++DSR + +G +FVAI G + DG F+P+A+ GA+ IV S ++ Sbjct: 36 EAGTSPSVEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEK 95 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 + + + + V + + L+ A L+ + ++ VTGT+GK+S A+ + ++ +R Sbjct: 96 ALFEQVDASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNGKTSTATMLHRLFERL 155 Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S IG + I + TTP PI LA+ L + G +HV +E SSH Q R+ Sbjct: 156 GYKSGLIGTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHVFMEVSSHAAHQRRI 215 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 ++ + G FTNL RDH+DYH T Q Y AK F++ L + A++ ADD +++ Sbjct: 216 GSLEFVGGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQ-LSPNAFALVNADDRNGSVMLQN 274 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + + + + + + + + AA Sbjct: 275 TSAKKYTYGLKSFADFKAKVVE----GDFRGTELLLNDRSVWIPLVGAFNAYNITLVYAA 330 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + ++ ++L+ L + GRFE + G VDYAHT ++L +L+ IR + Sbjct: 331 ARLLLPDLEQDVLLQALSTIETAEGRFEV--ISEGGRIGIVDYAHTPDALIKVLETIRPL 388 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR+I V G GG+RD+GKRPIM + A +D+ I+T DNPR EDP+ I E++ G+ Sbjct: 389 VPQGGRVITVVGAGGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEMMAGLT 448 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R AI TA + +DV++VAGKGHET + +G + D + +R Sbjct: 449 PEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKGHETYQEI-HGVRHHFDDREELRLA 507 Query: 493 LG 494 L Sbjct: 508 LR 509 >gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 495 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 217/473 (45%), Gaps = 12/473 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ + DSR + G FVAI G G F+ QA A GA A++ Sbjct: 19 DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAPNGMPVPAD 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R L + A + +G+ ++ VTGT+GK+S + Q G + Sbjct: 79 A-----IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH Y AK +LF K + + + Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDAFGRTLFASLDPALR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V S + + + HN ++++G+ PL G F V N L AG Sbjct: 254 AIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ R Sbjct: 314 ALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 +I VFGCGG+RD GKRP M IA AD+AIVTDDNPRSED + I A+I+ G I Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAI 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI M + D++++AGKGHE V G + D + + L Sbjct: 434 VQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485 >gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila abortus S26/3] gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila abortus S26/3] Length = 483 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 135/502 (26%), Positives = 229/502 (45%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++S ++ ++ DSR++ G IF+A G DG+ F Sbjct: 1 MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ GA A+ S ++ + + + A++ YG + ++ Sbjct: 54 HLAVENGAIAVASS--------IYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ ++ + + IG I + + TTP L K L+ + Sbjct: 106 GITGTNGKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ +E SS GL +RL + G TNL DH+D+H + + Y AK++LF L Sbjct: 166 VKSHLSAAVMEVSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSML 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + + Q V + +G Sbjct: 226 PSSGLAVVNNDLCDAAQFIEA---TQAQPITYGIEQHADYQASHVRFSPFGTDFDLLYKG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F PL G+ +YN L A + D ++ + + GR E S Sbjct: 283 ETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLE--PIFSGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ + + ++ + GR+IVVFGCGGDRDQ KR IM ++ A+ Sbjct: 341 PIYIDYAHTPDALDNVCQTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKYG-FAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR EDPEKI EI G F + +R +AI A+ + + +D+++VAGKGHET Sbjct: 400 VTTDNPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I + D +I+ +L Sbjct: 460 QIFKHQTIA-FDDKEIVLGVLS 480 >gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] Length = 485 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 205/498 (41%), Positives = 280/498 (56%), Gaps = 23/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + + E + ++ DSR ++ G +F A+ G K DG F Sbjct: 1 MKLRELFGDD--------AAMDARTGELAVTGLAVDSREVKPGDLFFALAGTKTDGARF- 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A + + A ++ A + P + N R+ L+L A++ Y + P I AV Sbjct: 52 -------IDAAIAAGAVAVVGDHAPAGACVPSVATSNPRRALALAAAKFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG + S A +TTP PI L + L L Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVAPSRAVYGSVTTPDPISLHRELDQLVG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+RLDG+++ A FTNL RDH+DYH T Y + K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISV 295 + A+I AD S V++ A R++ VG +G H L Q+VT+ Sbjct: 225 PDGVAVISADHDCSGTVIEAASARNVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D+ V LE L GR E VG G Sbjct: 285 AGRERIIRLPLVGEFQIENALVSAGLVIGTGGDADQVFAALEHLEGAKGRLELVG-ERNG 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VDYAH ++L L+ +R S +++VVFG GGDRD GKRP+MG++A AD+ IV Sbjct: 344 APVFVDYAHKPDALAKALQALRPYASRKLVVVFGAGGDRDAGKRPLMGEVAAANADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSE+P IRA I+ G E G+R EAIRTAI L D L++AGKGHET IV Sbjct: 404 TDDNPRSENPAAIRAAILAAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKGHETGQIV 463 Query: 476 TNGEKKMSVDCDIIREIL 493 + D D L Sbjct: 464 GD-RVLPFSDHDAAIAAL 480 >gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] Length = 491 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 211/474 (44%), Gaps = 20/474 (4%) Query: 30 INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + +DSR +Q G F+A G DG F+ QA+ GA +V L A Sbjct: 20 VTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVE----LDGVEAFGFE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + + + + A + + ++A TGT+GK+S A + Q R G Sbjct: 76 DARVATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGV 135 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + LTTP P+ L A QG ++EASS G+ +HRLD ++ Sbjct: 136 MGTLGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEID 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN RDH+DYH T AY+ AK RLF A + D + A Sbjct: 196 VALFTNFTRDHLDYHGTMAAYWEAKRRLFAW---PGLKAAVINVDDEQGARLAAEPLALD 252 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + V + T+ + L GE+ V+N L G A+ Sbjct: 253 VWTYAVNGAARLVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSG 382 G+ A + L VPGR + V + VDYAHT ++LE +L+ +R + G Sbjct: 313 GVALADAAAVVPALTPVPGRMQRVPGEHV--EVVVDYAHTPDALEKVLQALRPLAAARGG 370 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 R+ VFGCGG+RD KRP+MG IA LAD + T DNPR E P I ++I+ G+ Sbjct: 371 RLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAGHDEV 430 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI A+ DV+++AGKGHE + G ++ D R L Sbjct: 431 DVIEDRHEAIAYAVANAAPGDVVLLAGKGHEDYQEIK-GVRRPFSDETEARAAL 483 >gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] Length = 490 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 134/496 (27%), Positives = 225/496 (45%), Gaps = 23/496 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + ++ + + +I+ +S+ + ++ G +F+ G K D H IP+ I Sbjct: 1 MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G + + P ++V ++R F + AS + ++ L T Sbjct: 61 KG---------AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGT 111 Query: 126 KSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + + + + + +TTP I + A+ G Sbjct: 112 NGKTTTTLMIYHMLTSMGVKGSALTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGG 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++E SSH L Q R++G++ G FTN+ RDH+D+H T + Y AK+ LF+ L Sbjct: 172 RFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGF 231 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + + H +V + L + + Sbjct: 232 AVLNES-------LSDALHRRVRKVTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLKV 284 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVD 361 G+F YNA A +G D + E LE V GRFE V G + VD Sbjct: 285 FTRAIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVD 344 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++ +LAD+ I+T D+PR Sbjct: 345 FAHSPDALEKLLKNVRKISKGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDDPR 404 Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EDPE+I ++I G+ ++ +R EAI TA+ + N+ D +VVAG+GHE I+ + Sbjct: 405 GEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAGRGHERYQIIDDE 464 Query: 479 EKKMSVDCDIIREILG 494 +K D ++I EIL Sbjct: 465 KKIPFHDREVIEEILR 480 >gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] Length = 485 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 219/498 (43%), Positives = 287/498 (57%), Gaps = 23/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DLI D + ++ V+ DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRDLIGND--------AAIEPAVAALEVTGVALDSRVVRPGDLFFALAGSKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A + A ++ A P + V N R+ L+L A+R + P I AV Sbjct: 53 DAAVA--------AGAVAIVGDHAPDGCKVPFIAVANPRRALALAAARFFPAQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +R G +S IG +S LTTP PI L + + ++ Sbjct: 105 TGTSGKTSVAAFTRQIWERLGHASASIGTIGLVSPKRTVYGSLTTPDPIALHRQMDEIAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T Y AK+RLF EL+P Sbjct: 165 EGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVP 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295 A+I AD S E + A G RV++VG G I L +V Q++T+ Sbjct: 225 PGGAAVISADHDCSAEAIDAAKARGLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 GK + L PL GEFQV NALV+AGL I G D+A V LE L GR E VG G Sbjct: 285 RGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVG-ERNG 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I+VDYAH ++L L+ +R R++VVFG GGDRD GKRPIMG+IA + AD I+ Sbjct: 344 APIFVDYAHKPDALAKALQALRPYAKRRLVVVFGAGGDRDAGKRPIMGEIAAENADGVII 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSE PE IRA I+ G E G+R AIR AIE L + D L++AGKGHET IV Sbjct: 404 TDDNPRSEQPEAIRAAILATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKGHETGQIV 463 Query: 476 TNGEKKMSVDCDIIREIL 493 + E D + + L Sbjct: 464 GS-EVLPFSDHEAVAAAL 480 >gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] Length = 514 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 155/482 (32%), Positives = 225/482 (46%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V DG IPQAI GA A++ ++ Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAE----AHGYTMPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + IL VD + A++ YG ++ VTGT+GK+S + ++ Q + G Sbjct: 88 APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L+ L G +++E SSHGL+Q R+DG Sbjct: 148 AVVGTLGTGFVDALAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTC 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + ++ Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + +++ V A + P G F V N L Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G + G+ + HLEKL V GR E G G + VDYAHT ++LE L+ + Sbjct: 328 VLGALLTAGVPWPDAIAHLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I EI Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D + +R Sbjct: 447 GMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] Length = 497 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 148/476 (31%), Positives = 224/476 (47%), Gaps = 11/476 (2%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ V+ + Q G +F A+ G++ G + +A+ +GA A++ +A + ++ Sbjct: 17 PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAE-IASR 75 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 + P+LV + R L AS +YG+ + ++ VTGTSGK++ V+ + +G Sbjct: 76 GAPDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRV 135 Query: 144 SFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG Q LTTP L L+ + QGV V +E SSH L R+DG+ Sbjct: 136 AGLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGRVDGV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL RDH+D+H T + YF+AK RLF+ + + D M Sbjct: 196 SFAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARAR 255 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V + G + + V + G LPG + V N L+A L Sbjct: 256 RPVTVSTTGPADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLAIALL 315 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+G+ + V PGR E V VDYAH +L +L+ +R +G Sbjct: 316 DAVGVSPEQAAPGVRDATV-PGRLESVDRGQ-PFLALVDYAHKPGALRAVLQTLREQCTG 373 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIPG 438 R+ VVFG GG+RDQGKR MG++A +LAD+ +VTDDNPR EDP I A Sbjct: 374 RLAVVFGAGGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRAAILAGAAGARAE 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R AI A D++++AGKGHE + G+ + D D + L Sbjct: 434 VVEIGDRRAAIGHAAGWARAGDIVLIAGKGHEAGQT-SGGQTRPFDDRDELAAALE 488 >gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI18] gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID1] gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID24-1] gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] Length = 492 Score = 286 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 217/470 (46%), Gaps = 16/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+ GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266 TNL RDH+DYH T +AY ++ AII DD Y E++ K+ Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAV 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + I + A + + + L G F N L A G Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + Sbjct: 380 WCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 535 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 39 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 99 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 512 GGRVRPFDDR 521 >gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN 4207] gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] Length = 517 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 21 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 81 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 375 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 376 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 434 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 435 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 493 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 494 GGRVRPFDDR 503 >gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 517 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 21 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 81 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 375 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 376 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 434 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 435 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 493 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 494 GGRVRPFDDR 503 >gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Rv] gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis AF2122/97] gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Ra] gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis F11] gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat e ligase MurE [Mycobacterium tuberculosis H37Rv] gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis AF2122/97] gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE [Mycobacterium tuberculosis H37Ra] gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis F11] gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis W-148] gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 4207] Length = 535 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 39 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 99 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 512 GGRVRPFDDR 521 >gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 210] gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN R506] gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN V2475] gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis CDC1551A] Length = 521 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 25 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 85 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 261 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 262 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 321 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 322 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 379 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 380 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 438 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 439 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 497 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 498 GGRVRPFDDR 507 >gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing bacterium SSC/2] gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 485 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 137/501 (27%), Positives = 233/501 (46%), Gaps = 25/501 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L+ + L+ + +I+ + DSR I+ G +FV I G DGH F+ Sbjct: 1 MILKELLERSEYTLVQGS-------EDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 QA GA A+VV + + N ++ DNTR L+ ++ +G E + Sbjct: 54 AQAAELGAAAVVVEKDVEVPE-------NLTVIKFDNTRLALAEMSAAYFGYPAEELTTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ + + +G + IG TI + TTP + ++ + Sbjct: 107 GITGTKGKTTTTYMIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+ +V +E SS L HR G + G FTNL DHI ++ + + Sbjct: 167 ADAGLKNVVMEVSSQALMLHRTSGFEFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFK 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K+ DD + + + ++ ++ Sbjct: 227 QCKQGIVNGD-DDYVERIIKDHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGK 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++++ +PG+F VYN+L A LC +GI VL L + V GR E + Sbjct: 286 QEYNVHVDIPGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQV-KGRLEIIK-TPGDYT 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH + SLE +L IR +I +FGCGG+R + +R MG+++ LAD+ +VT Sbjct: 344 LMIDYAHNAMSLESLLTTIRKYNPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTS 403 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+P I +I+ G+ ++ +R EAI+ +E D++++AGKGHE Sbjct: 404 DNPRNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKGHEDYQ 463 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + G K + D+I+EI+ Sbjct: 464 EIK-GVKHHMDERDLIQEIIE 483 >gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679] gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] Length = 492 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA DG +IP A+A GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] Length = 581 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 85 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 144 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 145 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 201 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 202 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 261 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 262 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 321 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 322 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 381 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 382 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 439 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 440 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 498 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 499 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 557 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 558 GGRVRPFDDR 567 >gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp Length = 535 Score = 286 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 147/490 (30%), Positives = 219/490 (44%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 39 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 99 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF A LF+ + Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRAR 275 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ V PGR E + G VDY Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511 Query: 477 NGEKKMSVDC 486 G + D Sbjct: 512 GGRVRPFDDR 521 >gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] Length = 497 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 134/498 (26%), Positives = 223/498 (44%), Gaps = 21/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ ++ +I Q + +I+++ DSR IFVAI G DGH +I Sbjct: 1 MKLKDLLK----DIEYISNIKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A +G+ +++ ++D + ++V ++R+ LS ++ + + + ++ Sbjct: 57 KGAYDKGSRVFIINHDLEIEDDAIK-------IIVPDSRRVLSRMSAIFFSEPTKKLKVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 +TGT GK++++++++ + +SG+++ IG + + L TTP L K + + Sbjct: 110 GITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS GL R+D I G +TNL DHI + + + Sbjct: 170 LDAGVECVAMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFG 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L K + ++A + G + I L + A + Sbjct: 230 LCKYGIINVDDENAQYMVDHAKCPTCGFSIDKESNIKAGNIELTRSSASLGVDFDYKLKD 289 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 PGEF +YNAL G+C GID +LE L V GR E + Sbjct: 290 QDTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAKVD-GRVEVIPVL-DNA 347 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH SLE +L + R+I V+G G R +R +G +A L D++I+T Sbjct: 348 TVILDYAHNGLSLENVLDTLLKYDHNRMICVYGSIGGRAAIRRKELGDVAARLCDVSIIT 407 Query: 417 DDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNP EDP KI EI + +R EAI A+EM D+++V GKGHE Sbjct: 408 TDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLVTGKGHEKY 467 Query: 473 HIVTNGEKKMSVDCDIIR 490 + ++I+ Sbjct: 468 QYIHGQRVFYDEKAEVIK 485 >gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] Length = 495 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 223/490 (45%), Gaps = 16/490 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ Sbjct: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + V R L A R +G + ++ VTGT+GK+S Sbjct: 67 PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q G+ S G TTP + L + L+ L +G V++E SS Sbjct: 122 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD Sbjct: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDP 239 Query: 252 YSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++ V G+ + + + + + PL G Sbjct: 240 FGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGR 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N L AG+ A+ + + L L + GR +G + VDYAHT ++L Sbjct: 300 FNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 359 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ VTDDNPR ED + I Sbjct: 360 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIV 419 Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 A+I+ G + +R AI AI + + +DV+++AGKGHE V G + D Sbjct: 420 ADILAGFARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDT 478 Query: 487 DIIREILGLI 496 ++ R +L + Sbjct: 479 EVARRVLAAM 488 >gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] Length = 491 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 135/502 (26%), Positives = 219/502 (43%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ + E++ + +I + +DSR ++ G +FV I G DGH ++ Sbjct: 1 MILKQLLERLEYEVVQGSD-------KIEITTLINDSRKVEEGSVFVCISGAVSDGHQYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +GA+A++V + ++ V++TR L+L ++ +G E + + Sbjct: 54 ADVAKKGAKAVIVQQDVEA-------PAGMTVIRVEDTRYALALASAAYFGYPAEKLHII 106 Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I TTP + + + + Sbjct: 107 GITGTKGKTTTTYMIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLG+DHI + + + L Sbjct: 167 VEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKGL 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295 L ++ I D + + + + + + V Sbjct: 224 LFQQCRVGIANADDRYFKDVFKNATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVA 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG F VYN+L A +C + + L+K V GR E V + Sbjct: 284 GVMDFDVEIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAKV-KGRIEMVKVSDE- 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTII 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +I GI ++E +R EAIR AI +V+V+AGKGHE Sbjct: 402 TSDNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKGHED 461 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K + +I EIL Sbjct: 462 YQEIE-GVKHPMDERVLIAEIL 482 >gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] Length = 518 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 144/512 (28%), Positives = 234/512 (45%), Gaps = 34/512 (6%) Query: 7 IYKDFPELINQL----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 I +L+ + + K++ VS D+R + AG +F+A+ G+K DG FI + Sbjct: 4 IEITIAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEK 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 + A AI+ + D + P++ + ++ +S A+ YG I+ + Sbjct: 64 CDSATA-AILAEADTFGVDLTGA----VPVVHIPQLKQKISRVAANFYGHPSRSLTIIGI 118 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKA 173 TGT+GK++ A + Q+ + S +G D LTTPS + K Sbjct: 119 TGTNGKTTCAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKI 178 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ Q V V++E SSHGL Q R+ + FTNL RDH+DYH + + Y A + Sbjct: 179 LAE-LQQQVGAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRDHLDYHASLEEY--AATKA 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---------YQGKFIHLKKVCA 284 + S +I ADDA ++ S I + Sbjct: 236 ALFAREELSFVVINADDAVGVNILTNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEW 295 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 ++ + + L G + + N L A+G V+ ++ L PG Sbjct: 296 GSSQTVAQLHTPWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPG 355 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R + V ++ + ++VDYAHT ++LE +L + T G++ VV GCGG+RD GKRP+M + Sbjct: 356 RLQRVNSSEQPLAVFVDYAHTPDALEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAE 415 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461 +A LA+ ++T DNPR E+PE I +++ G+ + +R AI A+ + D Sbjct: 416 VAERLANCVVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDA 475 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +V+AGKGHE +V GEK D I +E L Sbjct: 476 IVIAGKGHENYQLVK-GEKLPFDDALIAKEFL 506 >gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] Length = 506 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 142/495 (28%), Positives = 225/495 (45%), Gaps = 22/495 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +QL + ++ DSR ++ G ++ A+ G + G F+ QA + GA A Sbjct: 17 LAELADQLGAAQPDRT-ADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAVA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+L V++ R + A+ LYG+ + + +TGTSGK++ Sbjct: 76 VLTDPGGAER----AAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + + + I + TTP L + + +GV V++E Sbjct: 132 TAYLVEGGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG FTNL +H+++H + YF AK +LF + A Sbjct: 192 VSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGIVN--A 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307 DD Y + + + A + G+ + V T++ PLP Sbjct: 250 DDEYGRRLAEEATVPVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPLP 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A A G+D+ + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +L+ +R +T GR+ VV GCGGDRD+ KR MG LAD A++T DNPRSEDP Sbjct: 369 AVESVLRALRKVTKGRVHVVLGCGGDRDRTKREPMGAAVARLADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G R E + A+ D ++VAGKGHE + G Sbjct: 429 ILAAMLQGAASV-PAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-G 486 Query: 479 EKKMSVDCDIIREIL 493 + D ++RE + Sbjct: 487 VVRPFDDRQVLREAI 501 >gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] Length = 486 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 205/492 (41%), Positives = 269/492 (54%), Gaps = 22/492 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + + ++ ++ DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLHDLL--------GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI + + P + + N R L++ A+R Y + P I AV Sbjct: 53 A-------AAIAAGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI Q+ G SS IG +S LTTP PI L + + ++ Sbjct: 106 TGTSGKTSVAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQ 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH Y NAK+RLF +L+P Sbjct: 166 DGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVP 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295 A+I AD S +VM A R+++VG G I L QQ+ + Sbjct: 226 PGGAAVISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQH 285 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ + PL G FQV NALVAAGL I G D V E LE L GR E VG G Sbjct: 286 CGRMYTIRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGRLELVG-EHNG 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I++DYAH ++L L+ +R + +++VVFG GGDRD GKRP+MG IA AD IV Sbjct: 345 APIFIDYAHKPDALAKALQALRPYAARQLVVVFGAGGDRDTGKRPLMGAIAAAEADRVIV 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ PG E G+R EAI+ AI L D LV+AGKGHE I+ Sbjct: 405 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKGHEVGQII 464 Query: 476 TNGEKKMSVDCD 487 G D + Sbjct: 465 G-GTTLHFSDHE 475 >gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] Length = 499 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 227/484 (46%), Gaps = 30/484 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 W + N DSR + +G IF+A+ K F +A+ GA A++ SA L+ Sbjct: 17 WVSQPFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLK 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQI 136 + V R + + + +AVTGT+GK++++ V ++ Sbjct: 75 NE----------WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAEL 124 Query: 137 CQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 GL +G T + TT + L AL + QG V++EASSHGL+ Sbjct: 125 ISSQGLGCAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLE 184 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q RL+G + ++NL RDH+DYH T AY AK LF+ K + A Sbjct: 185 QGRLNGCDIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKAVVINLDDQYASIML 244 Query: 256 VMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + + ++L+ H+ + + T+ + PL G+F V Sbjct: 245 KAAKNNPSQPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVE 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L + G D A +++ + +L PGR + VDYAHT ++L +L Sbjct: 305 NLLASLIAAEYAGFDLADLVKFVPELKGAPGRMQV--IQDHERLFVVDYAHTPDALIQVL 362 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++ +G++ VFGCGGDRD+GKRP+M + ALD A+ ++T DNPR+E+PE+I A++ Sbjct: 363 TTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFADMK 422 Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 HG+ E +R EAI+ ++ D++V+AGKGHE + +G + D + Sbjct: 423 HGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVVEV 481 Query: 490 REIL 493 + + Sbjct: 482 QSAI 485 >gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] Length = 499 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 238/492 (48%), Gaps = 30/492 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSA 76 ++W + + DSR +QAG IF+A+ + +F A++QGA I+ S Sbjct: 11 GNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSHSNKTRIFAENALSQGALGIISESD 70 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132 + T V R+++ + + + ILAVTGT+GK++++ Sbjct: 71 LGV----------TTAWVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTISRL 120 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + ++ +G T + TT + L AL SSQG V++EASS Sbjct: 121 IAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEASS 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RLDG ++ ++NL RDH+DYH T AY +AK LF+ + A+I DD Sbjct: 181 HGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFKFATLRS--AVINLDDD 238 Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 Y+ +++ A R S+ + + + + + ++ PL Sbjct: 239 YAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLL 298 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+F + N + + G + +L + +L PGR + + R VDYAHT + Sbjct: 299 GQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDVER--LFVVDYAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L +L ++ ++ +FGCGGDRD+GKRP+M + AL+ AD I+T DNPR+E PE+ Sbjct: 357 ALTQVLVTLKRHVQNQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQ 416 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A++ +G+ E +R EAI+ A++ D++V+AGKGHE + +G + Sbjct: 417 IFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRHWF 475 Query: 484 VDCDIIREILGL 495 D ++ L + Sbjct: 476 DDVVEVQSALEV 487 >gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] Length = 488 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 153/484 (31%), Positives = 235/484 (48%), Gaps = 13/484 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 F + E+ +N + DSR +QAG +F+ ++G++ DG F QA+A GA +++ S Sbjct: 7 YFAISLLEQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQ 66 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 N P + V LS A Y + + + VTGT+GK++VA+ + Q Sbjct: 67 DQARIEWHDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWT 126 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S +G + TT S + + + L+ + V++E SSHGL Q Sbjct: 127 HLLGKKSAVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQ 186 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+D ++ A FTNL RDH+DYH T QAY +AK LF ADD K+ Sbjct: 187 HRVDALQFAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRIIN--ADDEVGKQW 244 Query: 257 MKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ + + +++ + +T+ F L GEF V Sbjct: 245 LQQMDDAIEVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVC 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A +++G + + + + +L V GR E T VDYAHT ++L+ L Sbjct: 305 NLLLATATLLSLGYSLSCLSDSVNQLQGVCGRME-CFTAEGRPTAIVDYAHTPDALDKAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R G++ VFGCGGDRD+GKRP M KIA LAD ++TDDNPR+ED I +I+ Sbjct: 364 RAARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIINDIV 423 Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ R +A+ A N DV++VAGKGHE I+ + K D +I+ Sbjct: 424 QGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKGHEDYQIIGH-TKHHFSDREIVS 482 Query: 491 EILG 494 ++L Sbjct: 483 QLLN 486 >gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 537 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 230/502 (45%), Gaps = 25/502 (4%) Query: 11 FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL +QL + + E + ++ DSR ++ G ++ A+ G + G F QA GA Sbjct: 17 LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A++ A + + + P+L VDN R + A+ +YG+ + + +TGTSGK+ Sbjct: 77 AVLTDPAGAER----AAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKT 132 Query: 128 SVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 + A ++ + + G T+ + D R+ TTP L + + + V Sbjct: 133 TTAYLIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDV 192 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V +E SSH L R+DG F NL +H+++H + YF AK +LF + + Sbjct: 193 HSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAG 252 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFD 301 DD Y + +++++ + G+ V T + G+ Sbjct: 253 VINY--DDEYGRRLIEQSEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESVR 310 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PLPG F V NAL A GID + + + VPGR E V VD Sbjct: 311 AAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDVGQ-PYLAVVD 369 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++E +L+ +R +T G++ V GCGGDRD+ KR MG +D A++T DNPR Sbjct: 370 YAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGAAVARYSDTAVLTSDNPR 429 Query: 422 SEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 SEDP I A ++ G + + +R AI A+ D ++VAGKGHE Sbjct: 430 SEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVIVAGKGHELGQ 489 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 + G + D ++RE + L Sbjct: 490 DIA-GVIRAFDDRQVLREAIEL 510 >gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae MS11] gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] Length = 492 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 214/468 (45%), Gaps = 12/468 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR I+ G IFVA G DG +IP A+ GA + F+ P Sbjct: 26 LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 83 QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142 Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + F Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY K RLF K + A +K+ Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELIGRLKKDCPDLAVYS 262 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + I + A + + + L G F N L A G Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 VL+ L K+ GR + NS + VDYAHT ++LE L ++ I + Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445 VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ +P + +R Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488 >gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA1] Length = 499 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + +TGT+GK++ A V+ + +G I Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +TTP L + ++ +G + V +E SSH L R+DG Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNLGRDH+D+H T YFNAK RLF L + DD +++++R Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249 Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + A +S + LPGEF V NA +A + Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381 A G+ V + L V PGR E V VD+AHT ++ L R+ + Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA ++ G Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428 Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G I R EAI A+ M DV+ V GKGHET + + E D ++IR Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLSFDDREVIR 483 >gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] Length = 502 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 222/496 (44%), Gaps = 29/496 (5%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L + +I+ ++ S ++ G +F + G + G + E V + A Sbjct: 12 LHKKISGSPDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRY--------VEEAVAAGAV 63 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ A + ++ ++ V + R L+L ++ Y +P LA+ G +G + + I Sbjct: 64 AVVSDMAELETSATVVTVPDVRMALALVSACFYD-YPSRELAMIGVTGTNGKTTTTYLID 122 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 S G T+ + TTP L L + +GVT+ ++E SSH Sbjct: 123 ALLQNSGAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHA 182 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE------SPAIIY 247 L HR G TN+ DH+D+HQT Y +K +LF A+I Sbjct: 183 LAWHRTIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVIN 242 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + G +L + V + + + + Sbjct: 243 GDDKHWQHFADQTP--GEVMLYGLSNHCHVRANDVKVERDAVNFRLETPVGGTEITLKMT 300 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F VYN+L A + + GID A + +E + VPGRFE V + VDYAHT + Sbjct: 301 GLFSVYNSLAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDAGQ-NFTVIVDYAHTPD 359 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 LE +L+ R R++ VFGCGGDRD+ KRP+MG+ A +D IVT DNPRSEDPEK Sbjct: 360 GLENVLQAAREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEK 419 Query: 428 IRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I EI+ G+ + + +R AIR A+E+ K DV+++ GKGHET + + Sbjct: 420 IIDEILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITGKGHETTQVFRDHTIT 479 Query: 482 MSVDCDIIREILGLIL 497 D I E++ L Sbjct: 480 -FDDRQIAGELIRRRL 494 >gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] Length = 490 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 130/503 (25%), Positives = 220/503 (43%), Gaps = 26/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ K E++N + I + DSR A +FV + G DGH +I Sbjct: 1 MKLSKLLEKLEYEVLNG-------NVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +G AIVV + + + ++ +TR L+L ++ + + + + Sbjct: 54 SDVAGKGVLAIVVQKDIEVTEEL----KDITLIKTADTRYALALMSAAFFDYPAKKLKTI 109 Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 T K + ++ + + IG TI ++ TTP + K S + Sbjct: 110 GITGTKGKTTTTFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + V +E SS L +R GI G FTN+ DHI + + + Sbjct: 170 VEAGCSCVVMEVSSQALMLNRTAGILFDIGVFTNIEPDHIGP---NEHASFEEYMECKSR 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISV 295 L K+ I D+ + + H + + +++ + N + Sbjct: 227 LFKQCVHGIGNADSEYFDKIMEGHTCTLETYGIKNKADLKAENIRYIHEGGNITTSYNTT 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 ++ + LPGEF VYN+L A + +D +L V GR E V + Sbjct: 287 GTRELNIKLTLPGEFSVYNSLCAIAVSEHFNVD-DKLLLDALYNTRVAGRVEPVKVSD-D 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L +R RI+ +FGCGG+R + +R MG+++ +AD+ I+ Sbjct: 345 FIVMIDYAHNAMSLESLLSTLREYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTII 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR EDP I +I GI ++ +R EA++ AIE K D++V+AGKGHE Sbjct: 405 TSDNPRDEDPVLIMQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKGHED 464 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + G + D +++++ + Sbjct: 465 YQEIK-GVRYHQTDKELVQKAME 486 >gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] Length = 508 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 140/507 (27%), Positives = 232/507 (45%), Gaps = 22/507 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ + F ++ +RKI + ++S+ I G +F+ + G G F Sbjct: 5 LSSLLKATNLK-------FGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYS 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AV 120 A+ GA + + D + T + SL A+ + + ++ V Sbjct: 58 ALDSGAITALGRKIAVISDLPLVANTLTN--ADKQIAHWTSLLATNFWQQPSRWMILLGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V ++ + SG S G + ++ + TTP L L+ Sbjct: 116 TGTNGKTTVTHLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVE 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL- 238 G ++E SSH L+Q+R+ G + FTNL +DH+DYH + +AYF +K LFE L Sbjct: 176 AGSQIGAMEVSSHALNQYRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLL 235 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + D + + + C S+ + ++ + N I Sbjct: 236 ANHGPLAVINSDDLWGARLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLG 295 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355 + F P+ G F + N L A G+ I + +L+ ++ +PGR E + Sbjct: 296 EGYFSSPMVGYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLD 355 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +DYAHT + LE L R+ G +I VFGCGG+RD+ KRPIMG+ A LAD Sbjct: 356 LSPSVIIDYAHTPDGLEKALIAARSFVKGSLICVFGCGGNRDKRKRPIMGETAARLADEI 415 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IVT DNPR+E+PE+I +I+ GIP + + +R AI +++ + D++++ GKGHE Sbjct: 416 IVTSDNPRTENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVGKGHE 475 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 I + + D + + L L Sbjct: 476 DYQIFRD-DSVYFEDREEAEKSLRARL 501 >gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] Length = 490 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 210/491 (42%), Positives = 278/491 (56%), Gaps = 16/491 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL D P P + + ++ DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLRDLFSDDAP---IDAQGSPRGAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI + D + P + + N R+ L+L A+R Y + P I AV Sbjct: 58 A-------AAIAAGAVAVAGDHAPDGELAVPFVPLGNPRRALALAAARFYSRQPRTIAAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F + I QR G ++ IG + + LTTP PI L ++L ++ Sbjct: 111 TGTSGKTSVAAFTRHIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH Y NAK+RLF +L+ Sbjct: 171 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVI 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296 A+I AD S +V+ A G R+++VG G I L + Q++TI Sbjct: 231 DGGAAVISADHDCSAQVIDAARARGLRLITVGRNGDAGEGIRLIEASIDGFAQKLTIEHA 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ PL GEFQ+ NALVAAGL I G D A L+ L PGR +FVG RG Sbjct: 291 GRRTAVHLPLVGEFQIENALVAAGLVIGAGGDPAAAFAALDHLEGAPGRLDFVG-ERRGA 349 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA AD IVT Sbjct: 350 PVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAGNADSIIVT 409 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRA I+ PG E G+R EAIRTAI L D L++AGKGHET IV Sbjct: 410 DDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKGHETGQIVR 469 Query: 477 NGEKKMSVDCD 487 + D + Sbjct: 470 D-TVLPFSDHE 479 >gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] Length = 493 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 31/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ Q E +I + DSR + I+ + G DGH F+ Sbjct: 8 MKLSEMF---------------EQAPEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 IA+G +AIV + + V+N + L+ AS Y + Sbjct: 53 EDVIAKGVKAIVHAKPIEHMH------KGVAYIQVENVNRTLNRIASLFYQHPSRYMKVF 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKS++ S +Q + + LTTP PI + K+++ + Sbjct: 107 GVTGTNGKSTITSIIQDVYSHFHPCGYIGTIAIRYGDVELPPSLTTPDPILIHKSMADMR 166 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+ ++E SSHGL+ R+ + F+NL DH+D+H T + Y AK +LF L Sbjct: 167 AAGMEACALEVSSHGLELGRVMSVDFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTN-L 225 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A++ DDAY + G V + + Q T+ K Sbjct: 226 KSDGVAVLNRDDAYYQAFAD--CTNGRLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEK 283 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L + +YN L A GI +L +L + + GR E + + Sbjct: 284 SYTIKTNLVAMYNIYNLLGAIAGMCEAGIAIEDMLPYLASIKQIEGRMERIDEGQL-FNV 342 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT + LE + + + IT II VFG G RD KR + G+IA D I+T Sbjct: 343 IVDFAHTPDGLEKVFEYAKDITKEGHSIIAVFGSAGKRDTKKRKVFGEIASKYCDSIILT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+PR ED +I EI GI I +R AIR AIE D +++ GKG E Sbjct: 403 EDDPRDEDAREIANEIKEGIKDTKNIFIEDRYNAIRQAIESAGAYDTVLILGKGDEVFMY 462 Query: 475 VTNGEKKMSVDCDIIREILG 494 G + D ++ RE + Sbjct: 463 REFGREPWLGDHNVARECIR 482 >gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] Length = 514 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V GN + DG IPQAI GA A++ + Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + IL VD + A++ Y + VTGT+GK+S + ++ Q R G Sbjct: 88 APVRILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L+ L G V++E SSHGL+Q R DG + Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGTR 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + ++ Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + ++ V A + P+ G F V N L Sbjct: 268 AVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L+ + Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I I Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ ++ +R AI A+ + DV+VVAGKGHE+ + G K+ D + +R Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] Length = 514 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 156/482 (32%), Positives = 227/482 (47%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V GN + DG IPQAI GA A++ + Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + IL VD + A++ Y ++ VTGT+GK+S + ++ Q R G Sbjct: 88 APVRILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L+ L G V++E SSHGL+Q R DG + Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGTR 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + ++ Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + ++ V A + P+ G F V N L Sbjct: 268 AVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L+ + Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I I Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ ++ +R AI A+ + DV+VVAGKGHE+ + G K+ D + +R Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] Length = 502 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 151/500 (30%), Positives = 229/500 (45%), Gaps = 17/500 (3%) Query: 11 FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ + + P + +I V+SDSR G +FV + G++ DG LF QA+ Sbjct: 5 LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALN---A 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENI--LAVTGTSGK 126 + + ++VV + L A+ + + E + L VTGT+GK Sbjct: 62 GAAAAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ + G S+ G + S + TT L L+ +S G Sbjct: 122 TTTTYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLA 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH L QHR+ G + FTNL +DH+DYH + + YF AK LF E L + PA Sbjct: 182 AMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPAR 241 Query: 246 -IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + D + A C S+ + ++ +C + + + F Sbjct: 242 AVVNGDDPWGAKLAERLGAQCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGAFQS 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----VGTNSRGGRIYV 360 PL G F + N L A G+ + + +L + VPGR E + + V Sbjct: 302 PLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTTLPTVLV 361 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + LE L R G++I VFGCGGDRD+GKRP M IA LAD +VT DNP Sbjct: 362 DYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNP 421 Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+EDP +I +++ GIP + +R AI I + D+++VAGKGHE I+ Sbjct: 422 RTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKGHEDYQILG- 480 Query: 478 GEKKMSVDCDIIREILGLIL 497 EK D + ++ L L Sbjct: 481 IEKVHFDDREEAQKALRRRL 500 >gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae LPCoLN] Length = 483 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 132/501 (26%), Positives = 218/501 (43%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++ ++ ++ DSR + G IF+A G + DG+ F Sbjct: 1 MDLKELLHGVQAKIYGKVRPL-------EVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+A GA AI S + ++ N + + +++ Y + Sbjct: 54 ADALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++ + S +G I + TTP+P L K L+ + Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q V +E SS GL R+ TN+ DH+D+H T +AY AK +LF + Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLV 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P I S+ + + + + + T+ Sbjct: 226 PPSGMVVINTDSPYASQCIESA---KAPVITYGIESAADYRATDIQLSSSGTKYTLVYGD 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + G++ VYN L A A D +LE + PGR Sbjct: 283 QKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRL--DPVLMGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ +L + + GR+IVVFGCGGDRD+ KR +M ++ A+ Sbjct: 341 PVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERYG-FAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPRSE PE I EI G + + +R +AI A+ + + +D++++AGKGHE Sbjct: 400 VTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEAY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D + E+L Sbjct: 460 QIFKHQTVA-FDDKQTVCEVL 479 >gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 498 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ + + I+ + DSR + G +F+A+ G K+DG FI Q Sbjct: 6 LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI + A AI+ + + N ++ + +SL A+R Y + + I+ + Sbjct: 55 AINKKAVAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V + Q G + +G + Q TT SPI++ LS + Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V++E SSHGL QHR+ + FTNL +DH+DYH+ + Y +AK LF Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K I+ ADD Y K +K+ N R +N +T Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L G F V N L++ + +G + ++ EK+ V GR E Sbjct: 293 FESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + +DYAHT ++L+ L I + I +FGCGG+RDQ KRPIMG IA ++D Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T+DNPR+E +KI +I++G + +R +AI A ++++AGKGH Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ N D I+ +LG Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495 >gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] Length = 499 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 138/486 (28%), Positives = 223/486 (45%), Gaps = 29/486 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYS 78 ++WR++ DSR+IQ +F+A+ K +F A+AQGA I+ Sbjct: 16 IEWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAETALAQGALGIISEQPLG 73 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQ 134 L+ V + R + + K + I+AVTGT+GK++++ V Sbjct: 74 LERE----------WVCADVRHRMGQWQKNYLQKTEPVNAARIIAVTGTNGKTTISRLVA 123 Query: 135 QICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ +G T + TT + L AL +G S+EASSHG Sbjct: 124 ELLTLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVKEGARFASLEASSHG 183 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAY 252 L+Q RL+G + ++NL RDH+DYH T AY AK RLF K + A Sbjct: 184 LEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFAFKSLKVAVINQDDAYAEL 243 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K V + + Q +K++ + + + ++ PL G F V Sbjct: 244 MKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGPKGEYLVESPLLGHFNV 303 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N + A G +++ + +L PGR + + + VDYAHT ++L + Sbjct: 304 ENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVIRD--QDRLFVVDYAHTPDALNQV 361 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK +R ++ VFGCGGDRD+GKRP+M + AL+ A+ I+T DNPR+E+P++I A++ Sbjct: 362 LKTLRRHVQQQLWAVFGCGGDRDRGKRPLMTQAALNGANPVILTSDNPRTENPKQIFADM 421 Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 GI E +R EAI+ ++ D++V+AGKGHE + G + D Sbjct: 422 KTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVIAGKGHENYQEIQ-GVRHWFDDVTE 480 Query: 489 IREILG 494 ++ + Sbjct: 481 VQSAIN 486 >gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 516 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 227/501 (45%), Gaps = 20/501 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + ++ L+ + + V+ ++ ++ G +F A+ G+ G + +AI + Sbjct: 15 LPALAAQVGAVLADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIER 74 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A++ +A + ++ P LV R L A+ +YG E + +TGTS Sbjct: 75 GAVAVLTDAAGVAEMGASASA--VPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTS 132 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G ++ IG A + LTTP L + ++ +GV Sbjct: 133 GKTTTTYLVEAGLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVD 192 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG G+FTNL RDH+D+H T YF AK +LF+ P + Sbjct: 193 TVVMEVSSHALALGRVDGTGFAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRAR 252 Query: 244 AIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGK 298 ++ D + + A +S Q V +Q I G Sbjct: 253 RVVVCVDDEAGRAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGV 312 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 LPG + V N LVA + A+G+ L VPGR E + Sbjct: 313 RHRVGIRLPGHYNVANCLVALAILDAVGVSPEQAAPGLLD-TRVPGRMEEIDCGQ-DFLA 370 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH +L +L ++ R+ VVFG GG+RD GKR MG A +LAD+ +VTDD Sbjct: 371 LVDYAHKPGALRAVLTSLAR-PGRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDD 429 Query: 419 NPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 NPR EDP IR EI+ G +E G+R AI A+ DV++VAGKGHET Sbjct: 430 NPRGEDPAAIRREILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKGHETG 489 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 GE + D + + L Sbjct: 490 Q-RAAGEVRPFDDRLELADAL 509 >gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] Length = 505 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 155/509 (30%), Positives = 231/509 (45%), Gaps = 32/509 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ F EL +I + V DSR G +FVA+ G DGH ++ Sbjct: 4 LHDLLSDLFAELRGDDAIM--------VTRVVYDSRQATPGSLFVALRGTHTDGHCYLAD 55 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A ++GA A VV + S + I V +TR L+ A+R YG ++ + V Sbjct: 56 AASRGAVAAVVE-----EWPSQDVPGLRTIARVSDTRVALAAIAARFYGHPASDLGLIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ + I + +G + IG + A D R TTP + + L+ + Sbjct: 111 TGTDGKTTTTFLIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + GV VEA+SHGL+ HRLD TN+ ++H+D+H T + Y AK RL E + Sbjct: 171 RATGVAWAVVEATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFV 230 Query: 238 LPKESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + A D + R + + + + + Sbjct: 231 RDRPERAYPRGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRL 290 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D L G + V NAL AAG I +GI V+ L++L VPGRF + Sbjct: 291 RYGDQAADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDCGQ 350 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R+ VDYAHT S E +L R++ GR+IVVFG G+RD+ KR + G IA LA+ A Sbjct: 351 -PFRVIVDYAHTPKSFERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAIAARLAEFA 409 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + T ++PR EDP+ I AEI G F+ +R AIR A D++++ Sbjct: 410 VFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVLLL 469 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKGHE + + + + R+ L Sbjct: 470 GKGHEQCILYGDERRPW-NEEAEARQALR 497 >gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] Length = 500 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 140/497 (28%), Positives = 242/497 (48%), Gaps = 16/497 (3%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K L + ++ I ++ +S +++ IF+A G++ DGH FI A +G Sbjct: 6 NKLLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A I+ + + ++V++ +K + + +L+ P+ IL VTGT+G Sbjct: 66 ASLIIAQDEEKIP-----TNDSLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 KS+ S V I Q+S S I ++ TTPS + L+K L + Sbjct: 121 KSTTVSLVHHILQKSDKDSTLISTVEIKIKDEVVKEPYNTTPSILELSKILKNSKENNIE 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +++E SSH + Q R++G+K SFTN+ RDH+DYH+ + Y + K+ L L + Sbjct: 181 FINMEVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDEGKI 240 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I V + + + + + E K ++ Sbjct: 241 VINLDRLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTK---EHKSYEIR 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDY 362 L G+F VYN A + G++ ++ + V GRF+ V G+ S G +D+ Sbjct: 298 SHLIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDF 357 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++L +LK +IT GRII VFG GG+ D+GKR +MG++ + +D+ ++T+D+P+ Sbjct: 358 AHTPDALNEVLKTASSITEGRIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTNDDPKD 417 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP++I ++ GI FI +R AI TA+ NK D++++AG+GHE + NG+ Sbjct: 418 EDPDQIIEDVSKGIDQDKHFIVIPDRETAIDTALRFANKGDIVIIAGRGHEKYQLFANGK 477 Query: 480 KKMSVDCDIIREILGLI 496 K D ++ ++++ I Sbjct: 478 KVKFNDYEVTKKLIDKI 494 >gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas entomophila L48] gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas entomophila L48] Length = 487 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 152/492 (30%), Positives = 225/492 (45%), Gaps = 34/492 (6%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI----------AQG 67 +F R+ I E++ DSR ++ G +F+A+ G K DG I A+ QG Sbjct: 6 SKLFAHASRDPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A + P++ V LS A R YG+ + + VTGT+G Sbjct: 66 ASV--------------LPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV + Q G IG T Q RLTTP PI + L+ L G Sbjct: 112 KTSVTQLLAQALDALGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKA 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++E SSH L+Q R+ + TNL RDH+DYH + AY AK +LF + Sbjct: 172 VAMEVSSHALEQGRVAALDFDIAVMTNLSRDHLDYHGSMGAYEAAKAKLFAWSSLRARVV 231 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD + + + + + S+ + K+ + + I + Sbjct: 232 NL--DDDFGRRLAEAHGQSRLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRS 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F + N L A +A+ +L+ +LH GR + +G + + VDYAH Sbjct: 290 RLLGRFNLSNMLAAVATLLALDYPLDEILKVTPQLHGPIGRMQRLGGGDKPL-VVVDYAH 348 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE +L+ +R G+++ +FGCGGDRD GKRP+M +A LAD +VTDDNPR+ED Sbjct: 349 TPDALEKVLEALRPHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTED 408 Query: 425 PEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P +I +I G + R EAI I DV+V+AGKGHE + NGE+ Sbjct: 409 PLRIFDDIRPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKGHEDYQEI-NGERH 467 Query: 482 MSVDCDIIREIL 493 D + L Sbjct: 468 DFSDLVEAEKAL 479 >gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 498 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ + + I+ + DSR + G +F+A+ G K+DG FI Q Sbjct: 6 LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI + A AI+ + + N ++ + +SL A+R Y + + I+ + Sbjct: 55 AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V + Q G + +G + Q TT SPI++ LS + Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V++E SSHGL QHR+ + FTNL +DH+DYH+ + Y +AK LF Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K I+ ADD Y K +K+ N R +N +T Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L G F V N L++ + +G + ++ EK+ V GR E Sbjct: 293 FESSWGTGRISSCLIGHFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + +DYAHT ++L+ L I + I +FGCGG+RDQ KRPIMG IA ++D Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T+DNPR+E +KI +I++G + +R +AI A ++++AGKGH Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ N D I+ +LG Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495 >gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] Length = 458 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 142/464 (30%), Positives = 227/464 (48%), Gaps = 23/464 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR ++ G F+AI DGH +I QAIA GA I+ + ++ Sbjct: 7 TDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEHGSYKVET----------II 56 Query: 95 VDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 V++TR++L L+ + ++ +TGT+GK++ QI + + +G Sbjct: 57 VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L L GV + +E SSH LD+ R+ G++ +FTN Sbjct: 117 YYGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH+T + Y NAK LF + + AII DD + + + ++N G Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNIII----G 231 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + ++ H ++ + G + +YN L+A L +G+ Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L +KL GR E + + I+VDYAHT +++ +LK+ +GRII + GCG Sbjct: 292 ILALNDKLKAPAGRMELLKYGTNS--IFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449 GDRD KRPIMGK AL+ +D I T DNPRSEDP+ I +I +G+ F + +R +AI Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ L D+L++ GKGHE I G K D + + + + Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452 >gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 498 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ + + I+ + DSR + G +F+A+ G K+DG FI Q Sbjct: 6 LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI + A AI+ + + N ++ + +SL A+R Y + + I+ + Sbjct: 55 AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++V + Q G + +G + Q TT SPI++ LS + Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V++E SSHGL QHR+ + FTNL +DH+DYH+ + Y +AK LF Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K I+ ADD Y K +K+ N R +N +T Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L G F V N L++ + +G + ++ EK+ V GR E Sbjct: 293 FESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + +DYAHT ++L+ L I + I +FGCGG+RDQ KRPIMG IA ++D Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T+DNPR+E +KI +I++G + +R +AI A ++++AGKGH Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ N D I+ +LG Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495 >gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] Length = 486 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 145/496 (29%), Positives = 238/496 (47%), Gaps = 24/496 (4%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ELI + ++ + +++ ++ DSR I G F A+ G + DGH +I Sbjct: 2 KQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDA----- 56 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 ++A Q + + +VV +T ++ A+ YG ++ +TGT+G Sbjct: 57 -AVTAGAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ + + + + G I I + ++ TTP I L + ++ + G + Sbjct: 116 KTTTVTLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEY 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSH + Q R+ G+ G F+N+ DH+DYH+T Y AK LF + LPKE+ A Sbjct: 176 CFMEVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKK-LFFDNLPKEAFA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +I DD + +++ + + + + + ++G++ Sbjct: 235 LINIDDRNGRVMVQNTRATVKTLSLQSMADFRCKI----LETHPDGMELRIDGREVWVH- 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 G F YN L + +G D VL+ + LH V GRFEFV G VDYAH Sbjct: 290 -FLGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAAD-GTTAIVDYAH 347 Query: 365 TSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++LE +L+ + I ++ V+ GCGGDRD+ KRP M +IA+ A AI+T DNPR Sbjct: 348 TPDALEKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDNPRH 407 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP+ I +++ G+ ++ +R EAIRTA + D+L++AGKGHET IV + Sbjct: 408 EDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKGHETYQIVGD-V 466 Query: 480 KKMSVDCDIIREILGL 495 K D + L Sbjct: 467 KNHFDDKEEALRAFAL 482 >gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 514 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 130/478 (27%), Positives = 218/478 (45%), Gaps = 22/478 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V+ S +Q G ++V + G + G F A A GA A++ + S Sbjct: 40 TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDG----LAEARDSGL 95 Query: 91 PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++ + R L A+ ++ ++P + VTGT+GK+SV + + ++ G+ + Sbjct: 96 PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTS 155 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + +RLTTP L L+ + V V++E S+ L +HR+DG+ Sbjct: 156 TAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDVA 215 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +F NL DH+D + + YF AK F+ + + + + +++++ + Sbjct: 216 AFINLSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSLDTV--WGQRIVEQSRIPMTTI 273 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326 + + + + + P+PG F NA +A + + G Sbjct: 274 SAQPGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLVESG 333 Query: 327 IDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 D V L++ +PGR E V + G +VDY HT ++ E L+ +R T G Sbjct: 334 YDLDAVAHVLDRDGGIQAYIPGRAERV-SGDTGPLFFVDYGHTPDAFEQTLQALRPFTPG 392 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-- 440 ++++VFG GDRD KR MG IA LAD+ ++TD +PR EDP IRA +I G + Sbjct: 393 KLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGARAAVPD 452 Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E + AIRTA+ ++ + D ++VAG GHE H V G+K D R L Sbjct: 453 REIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GKKIPFSARDDARAALR 509 >gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum centenum SW] gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodospirillum centenum SW] Length = 491 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 195/482 (40%), Positives = 268/482 (55%), Gaps = 9/482 (1%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL D++ ++ L++ R+ I +++DSR I G +F A+ G + DG FI Sbjct: 3 KLSDIMASRTEIAVSALALE----RDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIA 58 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA+ A + + ++ N R+ L+L A+ YG P+ I AVT Sbjct: 59 QAV----AAGASAVLAPKGTVLPPGCEHVALIEDLNPRRRLALLAAAFYGAQPQRIAAVT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQ 180 GT+GK+S A F +QI G S +G ++ + LTTP P+ L + L+ L+ Sbjct: 115 GTNGKTSTAQFTRQIWSGLGHRSGAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARG 174 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVTH+++EASSHGLDQ RLDG+ + FTNL RDH+DYH+T +AYF AK LFE ++P+ Sbjct: 175 GVTHLAMEASSHGLDQFRLDGVLVTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQ 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ AD + + + V+ G +G+ + L + + QQV I V G Sbjct: 235 GAVAVLNADTPQFEALAALCRSRKQTVIGYGERGRELALHSARPLPHGQQVEIEVFGTRH 294 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G FQ++NAL A GL I G D A L +L V GR + V G +YV Sbjct: 295 SLELPLVGNFQLWNALCALGLVIGSGEDPAAATAQLARLEGVRGRLDLVARLKNGAAVYV 354 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + LE +LK +R T GR++ VFG GGDRD GKRP+MG++ LAD AIVTDDNP Sbjct: 355 DYAHTPDGLETVLKALRPHTVGRLVAVFGAGGDRDPGKRPLMGEVVARLADRAIVTDDNP 414 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 RSE P IRA I+ P E G+R EAI AI L + DVLVV GKGHE IV + Sbjct: 415 RSEVPAVIRAAILAACPDATEIGDRAEAIEAAIAGLEQGDVLVVCGKGHEQGQIVGTEVR 474 Query: 481 KM 482 Sbjct: 475 PF 476 >gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2tet1] gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 483 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 137/501 (27%), Positives = 240/501 (47%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR + G IF+A G +G+ + Sbjct: 1 MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+A GA A++ S + ++ ++ + A+R Y ++ ++ Sbjct: 54 SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSKHLDVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+++ +RSG+ + IG I + TTP I L K + + Sbjct: 106 GITGTNGKTTVSCLVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ +E SS G+ R+ + +AG TN+ DH+D+H + + Y AK + F Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP++ A++ D Y+ + + ++ + I +G Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K F L GE VYN L + + G D A ++ + L GR Sbjct: 283 KVFPCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRL--DPILLGPF 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ + + + + GR+I+VFGCGGDRD+ KRP+M K++ + Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKYGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M + +D+++VAGKGHE Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D +++ E L Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479 >gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] Length = 530 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 132/483 (27%), Positives = 215/483 (44%), Gaps = 24/483 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-- 89 ++ +DSR I G IF AI+G+ +DG +I QAI QGA+ +V + T S+ Sbjct: 32 DLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFASSDN 91 Query: 90 -TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ + L Y +N+ + +TGT+GK++ + + Q+ + Sbjct: 92 TVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQKTCAV 151 Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG S TTP L + S + ++V++E SSH L Q+R+ Sbjct: 152 IGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFD 211 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK---EVMKRAHN 262 FTNL RDH+DYH + +Y +K ++F + + A ++ Sbjct: 212 IAIFTNLSRDHLDYHGSMASYGESKKQIFSADSNQVAVVNFDDQQAKKWLENWPKQQTLW 271 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R F+ K + + T+ D D PL G+F + N L A + Sbjct: 272 LYSRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAISVL 331 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + GI + + + ++ + GR E + VDYAHT ++LE L+ R +G Sbjct: 332 LIQGIPLSEIPHLVTQVSAIAGRMEATSAKNL-ATAVVDYAHTPDALEKALQACRQHCAG 390 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----P 437 + VVFGCGGDRD+GKRP+M + A AD +VT+DNPRSED + I +I+ G Sbjct: 391 ELYVVFGCGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVAGFTCPDAE 450 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI---------VTNGEKKMSVDCDI 488 R +A+ + D++++AGKGHE I + +K + + Sbjct: 451 QISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVIVAKHDEKGGIVGTQKLAYNERLV 510 Query: 489 IRE 491 ++ Sbjct: 511 VKN 513 >gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 573 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 144/496 (29%), Positives = 230/496 (46%), Gaps = 22/496 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +L P + + + ++ DSR ++ G ++ A+ G + G F QA + GA A Sbjct: 66 LGELAARLGAAPQESGD--VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVA 123 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ A + + + P+LV ++ R + A+ +YG+ + + +TGTSGK++ Sbjct: 124 VLTDPAGAER----AAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTT 179 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G S+ IG + TTP L + + +GV V++ Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAM 239 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF + Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPRRSRLGVVNF- 298 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306 DD Y + ++ A + G+ V + T+ + PL Sbjct: 299 -DDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N L A G+D + + + VPGR E V VDYAH + Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDVTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476 Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G E+G+ AI A+ D ++VAGKGHE + +G Sbjct: 477 AILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-HG 535 Query: 479 EKKMSVDCDIIREILG 494 + D ++RE + Sbjct: 536 VVRPFDDRQVLREAIE 551 >gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] Length = 480 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 192/495 (38%), Positives = 269/495 (54%), Gaps = 16/495 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L LI + +L S+ + ++ + D+R + G +F A G + +G FI Sbjct: 1 MRLGSLIEEQDAKLGAGASL------DVPVSGFAIDNRKVAPGTVFGAFQGARMNGEDFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ + A ++ + DN R+ + A+R + PE +AV Sbjct: 55 PAAVQ--------AGAVAVVARPEARVEGAIHIAHDNPRRLFAQLAARYFAPFPEMTVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + G S IG T S LTTP + +S L Sbjct: 107 TGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLKR 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G+TH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH +YF AKMRLF+ ++ Sbjct: 167 EGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDGVVA 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+++ADD +S +V++RA G RVLSVG QG+ + L Q + + VEGK Sbjct: 227 PDGAAVVWADDEWSDKVIRRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLEVEVEGKP 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G +Q NAL AA L IA G D VLE L ++ V GR E G +Y Sbjct: 287 YKVSLPLIGAYQAANALTAAALVIAGGEDVGKVLELLGRVQPVRGRLERAVITRAGAPVY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L ++ +R T GR+I +FG GGDRD GKRP MGK+A DLAD IVTDDN Sbjct: 347 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLADHVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE+P IRA ++ G PG E G R AI AI D++++AGKGHE I+ + Sbjct: 407 PRSEEPSSIRAAVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 465 Query: 480 KKMSVDCDIIREILG 494 D + RE G Sbjct: 466 VLPFDDVTVARECAG 480 >gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] Length = 522 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 34/513 (6%) Query: 8 YKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + PELI L I + + + ++ + R Q G+IFVA G + DGH FIP AI Sbjct: 6 RRTLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAI 65 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122 +G A+V + P L V N+R+ L+ ++ Y + + VTG Sbjct: 66 ERGIVAVV--------GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTG 117 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS 179 T GK++ ++ + QI +G S+ + + + +TTP + + LS + + Sbjct: 118 TDGKTTTSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRA 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--- 236 G+THV +EA+SHGL+QHR+ G + G TN+ +H+DYH + +AY AK RLF Sbjct: 178 AGLTHVVLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSE 237 Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + D S E ++ + G + + + ++ + I Sbjct: 238 TPEKPHGNPRLAVLNRDDQSYEYLQSLVRVPAVSYGLAE-GADLRAENIRYEADRLRFDI 296 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L GE+ V N L A A + +GIDS + + + VPGR E + Sbjct: 297 VGRDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIHMG 356 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VD+AHT N+L+ L R IT GR+I VFG G RD+ KR +M +++ LADI Sbjct: 357 QS-FHAIVDFAHTPNALKQALLTARQITRGRVIAVFGSAGLRDREKRRLMAEVSAQLADI 415 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +I T ++PR+E E I E+ G F +R +AIR A++M D+++ Sbjct: 416 SIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDDLVIA 475 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 GKGHE + D +R L +L Sbjct: 476 CGKGHEQSMCFGE-TEYPWDDRVAMRAALAELL 507 >gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] Length = 506 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 159/494 (32%), Positives = 238/494 (48%), Gaps = 15/494 (3%) Query: 11 FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL + + ER ++ V+ ++ ++ G +FVA+ G + G FI A +GA Sbjct: 15 ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A++ A + + +LV R L + +YG ++ VTGT+GK+ Sbjct: 75 AVLTDEAGAACLGGTDAMA---VLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKT 131 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ + + +G ++ IG T S + + TTP L+ ++ GV V Sbjct: 132 TTTYLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVL 191 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LD R+DG + AG FTNL DH+D+H ++YF AK +LF+ + + Sbjct: 192 MEVSSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAV 251 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305 D + M R V + + L++ QQV + + F F Sbjct: 252 ICVDDSWGQRMSRVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLG 311 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G NA++A GL A G+ L VPGR E V VDYAH Sbjct: 312 LLGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQAGQ-DFLAVVDYAHK 370 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 SL +L+ +R T+GRI VV G GGDRDQGKRP+MG+++ A++ +VTDDNPRSEDP Sbjct: 371 PESLAKVLQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSEDP 430 Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 IRA+++ G G E +R EAI A+ D ++VAGKGHET V NG K Sbjct: 431 AAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQEV-NGVK 489 Query: 481 KMSVDCDIIREILG 494 D +I+ + Sbjct: 490 SHFDDREILARAIR 503 >gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] Length = 520 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 140/492 (28%), Positives = 223/492 (45%), Gaps = 32/492 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 KI +++DSR ++ G F+A G + D IPQAIA G A++ Q FS Sbjct: 23 VKIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEK----QGFSWKPE 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L + R AS++Y ++ +TGT+GK++ + + Q G + Sbjct: 79 WKIPNLGISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTA 138 Query: 146 QIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG A ++ TTP +YL + ++ G + +EASSHGL Q RL G + Sbjct: 139 IIGTLGHGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEF 198 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---------IYADDAYSKE 255 TNL RDH+DYH + AY AK +LF + + Sbjct: 199 SIAVLTNLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHAVLNLDEVLGVELSQQLAWKDVS 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ K ++ + + + + G + YN Sbjct: 259 IIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNL 318 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L +A +D + L+++ +PGR E +G + + VDYAHT ++L +L Sbjct: 319 LAVLATLLASNVDLDDAITALQQVQPIPGRMEKLGGGDQPI-VIVDYAHTPDALNEVLTG 377 Query: 376 IRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +R +G +++ V GCGGDRD+GKRP++G+IA LAD I+T DNPR+E Sbjct: 378 LRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIGEIASHLADEVIITSDNPRNE 437 Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +P I EI+ G + +R AI AI K D++++AGKG ET + G+K Sbjct: 438 NPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKGAETHQEIQ-GKKY 496 Query: 482 MSVDCDIIREIL 493 D +++R++L Sbjct: 497 PFDDREVVRQVL 508 >gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] Length = 491 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 131/500 (26%), Positives = 227/500 (45%), Gaps = 28/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+++++ + +N + + + + +SS+S+ I+ +F+ G D H + Sbjct: 1 MKIKEIL-----KALNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 GA + P ++V ++R S+ A + K E ++ Sbjct: 56 DDVARNGA----------EIFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITF 105 Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT+GK++ I + G+ G + I + TTPS I + K + Sbjct: 106 GVTGTNGKTTSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKT 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + ++E SSH L Q+R++ I+ TN+ RDH+D+HQT + Y AK+ + L Sbjct: 166 VIEDGKYYAMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLL 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P + + + V + ++ + + + Sbjct: 226 KPNGIAIVNHEL------IHDIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTPF 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356 + + L G+F +N + + IG D V+ + V GR E + + G Sbjct: 280 GEKKVVSQLLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +D+AHT ++LE + +IR +T GRII VFG GG D GKRP+MG+IA +DI I+T Sbjct: 340 EIVIDFAHTPDALEKAILSIRKLTKGRIITVFGAGGQSDVGKRPMMGEIASKYSDICIIT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+PR EDP KI +I G+ + +R EAI TAI + N+ D++++AG+GHE Sbjct: 400 TDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAGRGHEPYQ 459 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + K D D+ +I+ Sbjct: 460 VFDENYKVPFKDRDVAIDII 479 >gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] Length = 515 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 158/499 (31%), Positives = 240/499 (48%), Gaps = 21/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL++ + P + + ++ DSR + G ++VA+ G + G F QA A GA A Sbjct: 15 LVELLSAQADGP-GLAKVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAAAAGAVA 73 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 I A + + P+LV D+ R L AS +YG ++ + VTGTSGK++ Sbjct: 74 IWTDPAGRHR----AAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGKTT 129 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + +G+ + IG + LTTP L + + GV ++ Sbjct: 130 TVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAM 189 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L Q R+ G FTNL +DH+DYH T YF AK +LF + Sbjct: 190 EVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVVN-- 247 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306 DD Y +E+ + A + G + V + + G + D L Sbjct: 248 VDDGYGRELTRIAQVPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQL 307 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V NAL A + G+ + + L VPGR E + + VDY+H Sbjct: 308 PGPFNVANALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPI-DEGQDFTALVDYSHKP 366 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++E +L ++R +T+GR+IVV GCGGDRD+GKRP+MG+ A LAD+A++TDDNPRSEDP Sbjct: 367 GAVEAVLTSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPL 426 Query: 427 KIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G+ + + +R AI A+ + DV+V+AGKGHE V G Sbjct: 427 AILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHEQGQYVA-G 485 Query: 479 EKKMSVDCDIIREILGLIL 497 D +++R L ++ Sbjct: 486 RVLPFDDREVVRAELRRLV 504 >gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] Length = 495 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 134/514 (26%), Positives = 223/514 (43%), Gaps = 39/514 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + E+I+ + ++ + +E+ ++++I +FV I G K D H I Sbjct: 1 MKLIENAEGLDIEIISG------ELQD-EFSELVFNTKNIVKDCLFVCIKGAKFDAHDAI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + + QGA+A+VV R + ++ V +TR L+ ++ + HP + + Sbjct: 54 DEIVKQGAKAVVVQKDIK--------RDDICVIKVSDTRVALARLSAAYFS-HPAKKMKI 104 Query: 121 TGTSGKSSVASFVQQICQRSGL--SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 G +G + + + G IG TI + TTP L K Sbjct: 105 IGITGTKGKTTSSYMLQKLLGQNAKVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKEC 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +V +E SS + R++GI G FTN+ DHI + F+ + Sbjct: 165 LDANCEYVVMEVSSQAVMLKRIEGICFDIGIFTNISHDHIG--PDEHKDFDEYLMYKSLF 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----------AIH 286 + I+ +D ++ V+K + + G +++ + Sbjct: 223 FKQCKNTIVNIEDEHANYVLKTSDSKQKYTFGKGGDFDIKNIEYISNKDFLGTRIDIKCR 282 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + SV + D +PGEF VYNAL A I G+ A + L+ V GR Sbjct: 283 EEIAEKYSVNNEISDIYVGIPGEFNVYNALSALSAAIICGVKEADLKNALKD-SRVNGRM 341 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E S + +DYAH + S E ++ +R R+++VFG GG+R + +R MG+I Sbjct: 342 EVA-YTSHDFNVVIDYAHNAISTESLIHTLRNYKPKRLVIVFGSGGNRSKDRRYSMGEIC 400 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +AD +IVT DN R E E I A+II + +I +R EAI +IE K D++ Sbjct: 401 GKMADFSIVTADNSRFEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLI 460 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + GKGHE + NG + +D +++ E L I Sbjct: 461 AIIGKGHEDYQEI-NGVRHHFLDREVVDECLEKI 493 >gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] Length = 499 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 149/498 (29%), Positives = 226/498 (45%), Gaps = 26/498 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL K+ L + + + + DSR + G IF +VG DGH FI Q Sbjct: 9 LEDL--KNAGLLTDIGGDWNKIPADCTLKS---DSRTVGPGDIFACVVGLHADGHRFIEQ 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 + G +++ S P + V + R + A+ L + E + AV Sbjct: 64 VLKAGVSYLLIQRPVSGLP--------IPWIQVTDVRAAMGYVAAALNEEPSEKMKMFAV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GKS+ + V+ I Q G+ +G S + TTP + + L + Sbjct: 116 TGTQGKSTTSYMVRSILQNCGVKCGLLGTIVYDDGSKSVLADRTTPEGSEIQQFLKNMVD 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G S+E SSHG+ Q RL G FTNL +H+D+H T + Y+ AK LF + L Sbjct: 176 NGCQACSMECSSHGIAQGRLSGCLYDGAVFTNLTPEHLDFHGTMENYYEAKAALFRKYLK 235 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A + + + ++ + I + I K Sbjct: 236 PGAAVAPNAASEHGRRLAAEFPQ--AMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKM 293 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G V NAL AA +C+A G D V+ L + VPGR E + G R+ Sbjct: 294 GRVHIPLSGRHNVENALGAAAVCLAEGCDEKKVVAGLALMPQVPGRMERL-NLDNGVRVV 352 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAHT++SL+ +L+ +R +T GR++ +FG GGDR G R ++G+ A AD VT DN Sbjct: 353 IDYAHTADSLKALLETLRPLTEGRLVSLFGHGGDRFAGHRSLLGRAAAQKADRIFVTMDN 412 Query: 420 PRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR+EDP KI +I+ GI + R AI A++ + D+LV++GKG E Sbjct: 413 PRTEDPLKIAEQIVAGIEEVRADGCWSIELPRDAAICKALDWCRRGDLLVLSGKGPEPYL 472 Query: 474 IVTNGEKKMSVDCDIIRE 491 + NG K D ++ + Sbjct: 473 EI-NGVKYPYSDRAVVEK 489 >gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidiphilium cryptum JF-5] gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Acidiphilium multivorum AIU301] gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidiphilium cryptum JF-5] gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Acidiphilium multivorum AIU301] Length = 481 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 192/473 (40%), Positives = 265/473 (56%), Gaps = 16/473 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E + +++DSR ++ G IF A+ G + DG FI +A+ +A L Sbjct: 17 PETVFSGITADSRAVRKGMIFAALPGARADGRDFIA-------QAVAQGAAAVLAPSGTR 69 Query: 86 IRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P ++ R+ L+ A+ L G PE IL VTGT+GK+S F++Q+ SG Sbjct: 70 WPPGVPPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAVASGR 129 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G I+ FA LTTP P+ L+ L+ L + G+ V++EASSHGLDQ RL G Sbjct: 130 PAASLGTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQFRLHG 189 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKR 259 ++L AG F+NL RDH+DYH +Y AK+RLF++LL +PA+ AD + Sbjct: 190 LRLAAGGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAALRDI 249 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A + +VG G L+ + A + Q +TI+ G + PLPG FQV NAL+AA Sbjct: 250 AQARRLDLATVGAGGDLFDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNALLAA 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 GL A G+ L+ L L V GR E G YVDYAHT ++LE +L +R Sbjct: 310 GLARAAGVS--DPLDRLPGLAPVRGRLERAAVLPNGAAAYVDYAHTPDALERLLMALRPH 367 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +GR+++VFG GGDRD+GKR +MG +A LAD+AIVTDDNPRSEDP IRA I+ PG Sbjct: 368 AAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAACPGA 427 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 E G+R AI ++ L DVL VAGKGHE+ IV + D +IRE+ Sbjct: 428 REIGDRRAAIAAGLDALRAGDVLAVAGKGHESGQIVGDAV-LPFDDAAVIREL 479 >gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 491 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 157/506 (31%), Positives = 235/506 (46%), Gaps = 28/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DLI + + V+ D+ + G +F A+ G+ G Sbjct: 1 MKLSDLIAGQDHHALRGTPDR------TNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A+A+GA A++V + +L V + RK ++ ASR +G+ + Sbjct: 55 VAPAVARGAVAVLVDEQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +A+TGT+GK+SV+ + + + IG + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK+R Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF A++ ADD + K A G + + + T Sbjct: 232 LF---QGLCRRAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLAVDASGSRFT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P PG F V NAL C +G A +++ LE++ +PGRFE + Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL-QI 345 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA +D+ Sbjct: 346 PGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDL 405 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T DNPR EDPE I +I GI F +R AI A+ DV+++AGKG Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E V GE D +RE++G Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490 >gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] Length = 494 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 169/497 (34%), Positives = 245/497 (49%), Gaps = 13/497 (2%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L + L+ + ER + E++ DSR AG +FVA+VG+K DG +IPQAIAQG Sbjct: 2 TDRNLRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVA 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A+V + + D + T P++ + + + LS A R Y + ++ VTGT+GK+ Sbjct: 62 AVVAQADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKT 121 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + Q Q G +S +G + TT S + + + LS L QG + Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAA 181 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + A FTNL RDH+DYH Y AK RLF E + Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKVIN- 240 Query: 247 YADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ADD + + R +A + + +++ + + V Sbjct: 241 -ADDEVGRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAIN 299 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L GEF V N L+A +++G ++E L V GR E + R + VDYA Sbjct: 300 SRLMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGRPT-VVVDYA 358 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSE Sbjct: 359 HTPDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418 Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP+ I +I+ G+ R EA+ +A+ DV++VAGKGHE +V N Sbjct: 419 DPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478 Query: 481 KMSVDCDIIREILGLIL 497 D + +LG+I+ Sbjct: 479 DY-SDRITVARLLGVIV 494 >gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9902] gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9902] Length = 502 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 227/501 (45%), Gaps = 15/501 (2%) Query: 9 KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + EL+ + + P +I V+SDSR G +FV + G + DG LF QA+ Sbjct: 3 QLLDELLRDVGLTPPAGGTNPQIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNA- 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 A + + ++V + L AS + + E + L VTGT+G Sbjct: 62 -GAAAAVIGPAAAASDPPGDHDQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ ++ + G S+ G + + TT L LS +S G Sbjct: 121 KTTTTYLIEHLALACGRSTALFGTLVNRWPGHSVTATHTTAFADRLQAQLSEAASAGSQL 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSH L QHR+ G + FTNL +DH+DYH + Q YF AK LF E L + PA Sbjct: 181 AAMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPA 240 Query: 245 I-IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + + C S + ++ + + + F Sbjct: 241 RAVVNGDDPWGAKLAERLGSQCWRSSFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQ 300 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----VGTNSRGGRIY 359 PL G F + N L A G+ + + +L + VPGR E + + Sbjct: 301 SPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLPTVL 360 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE L R G++I VFGCGGDRD+GKRP M IA LAD +VT DN Sbjct: 361 VDYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDN 420 Query: 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR+EDP++I +++ GIP + + +R AI I + D+++VAGKGHE I+ Sbjct: 421 PRTEDPQRILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKGHEDYQILG 480 Query: 477 NGEKKMSVDCDIIREILGLIL 497 EK D + ++ L L L Sbjct: 481 T-EKVHFDDREEAQKALRLRL 500 >gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 491 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 230/476 (48%), Gaps = 17/476 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-AT 85 + +I ++ DS+ +F A++G DGH +I A + GA V+S LQ+ Sbjct: 20 DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 I N+ ++V++TR L+ ++ +G + I+ +TGT GK++V+ +++ + S +S Sbjct: 80 IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139 Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + TTP + K + + GV +++E SS G+ +R+ GI Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL DHI + F L +II DD SK +++++ + Sbjct: 200 EFDYAIFTNLSHDHIGEKE--HPTFEHYRECKSMLFAMSKYSIINIDDENSKVMIEKSKD 257 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + K + N + E + ++ G+F VYNAL LC Sbjct: 258 YKTYSI---DSSSDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIMLC 314 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+ + LEK HV GR + + ++ +DYAH SLE +L+ ++ + Sbjct: 315 EQLGLSYQSIYTGLEKAHV-KGRLQVI-DGFTDIKVIIDYAHNEVSLENVLQTVKELKPK 372 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PG 438 R+IV+FG G R Q +R + +A D+ IVT DNP +E+P+KI EI+ I Sbjct: 373 RLIVLFGSVGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIIDEIVSHISQDKKK 432 Query: 439 FIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI+ AIEM K DV+V+AGKGHE ++ NG ++ D + +++ + Sbjct: 433 YTYCYADRAVAIQKAIEMSQKGDVIVLAGKGHEEYQLI-NGVREHFSDEEEVKKYI 487 >gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70] gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70s] gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D(s)2923] gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis Sweden2] gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/150] gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/11023] Length = 483 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 137/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR + G IF+A G +G+ + Sbjct: 1 MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+A GA A++ S + ++ ++ + A+R Y + ++ Sbjct: 54 SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+++ +RSG + IG I + TTP I L K + + Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ +E SS G+ R+ + +AG TN+ DH+D+H + + Y AK + F Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP++ A++ D Y+ + + ++ + I +G Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K F L GE VYN L + + G D A ++ + L GR Sbjct: 283 KVFLCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRL--DPILLGPF 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ + + + + GR+I+VFGCGGDRD+ KRP+M K++ + Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M + +D+++VAGKGHE Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D +++ E L Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479 >gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas albilineans GPE PC73] gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate ligase protein [Xanthomonas albilineans] Length = 494 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 154/489 (31%), Positives = 225/489 (46%), Gaps = 12/489 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL RE +++ ++ DSR ++ G FVAI G G F+ QA A GA AI+ Sbjct: 7 LSQLLPDVALPREVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFE 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 ++ + V R + A +L+G + ++ VTGT+GK+S+ Sbjct: 67 PPAPADLPASADA-----IAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQL 121 Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q G S IG TTP + L L+ L G V++E SS Sbjct: 122 LTQAWHVLGTCSGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSS 181 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+D + FTNL RDH+DYH+ AY AK RLF + + + Sbjct: 182 HALDQGRVDAVHFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFAMPGLRAAVVNLDDTFG 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 V S G G + + + + V + PL G F Sbjct: 242 RQLLHALDPALRRIGVSSRGRDGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFN 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L AG A+ + + L +L + GR +G + VDYAHT ++LE Sbjct: 302 VDNLLAVAGALYALDVPPVRIAATLAQLQPIRGRMNRLGGRDAQPLVVVDYAHTPDALEQ 361 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+++R GR++ VFGCGG+RD GKRP M IA L+D VTDDNPR ED E+I A+ Sbjct: 362 ALQSLRDHAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVAD 421 Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G G R +AI AI M +D++++AGKGHE + G K D ++ Sbjct: 422 ILAGFDGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKGHEPYQEIA-GIKHPFDDTEV 480 Query: 489 IREILGLIL 497 + L + + Sbjct: 481 AAQTLRVRV 489 >gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL S4-171] Length = 440 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 132/450 (29%), Positives = 204/450 (45%), Gaps = 24/450 (5%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 F +A GA A+V + P++ V +T++ +++ A+ YG + Sbjct: 1 FAKKAEELGAVAVVAEKPVDVT---------IPVIYVRDTKRAMAMLANYFYGSPTQALK 51 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175 ++ +TGT+GK++V+ V+QI + SG + IG I + + TTP + L + Sbjct: 52 LVGITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFR 111 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK----- 230 + +GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y AK Sbjct: 112 EMLLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFA 171 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 A++ ADD S + + + Sbjct: 172 QLGNSYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGST 229 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ F + G F VYN L A A+ I + +E + V GRFE V Sbjct: 230 FNLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV- 288 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDY+HT + L +L+ I + R+ VV GCGGDRD+GKRP M KIA+ A Sbjct: 289 NAGQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYA 348 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 + T DNPRSE+P I ++I G+P ++ NR +AI+ AI DV+++AGK Sbjct: 349 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 408 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLIL 497 GHE I+ + E D R + L Sbjct: 409 GHEDYQIIGD-EVINFDDRLEARLAIEKRL 437 >gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D/UW-3/CX] gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276] gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276s] gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia trachomatis D/UW-3/CX] gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9768] gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11222] gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11074] gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9301] gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-EC] gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-LC] Length = 483 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 136/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR + G IF+A G +G+ + Sbjct: 1 MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+A GA A++ S + ++ ++ + A+R Y + ++ Sbjct: 54 SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+++ +RSG + IG I + TTP I L K + + Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ +E SS G+ R+ + +AG TN+ DH+D+H + + Y AK + F Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP++ A++ D Y+ + + ++ + I +G Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F L GE VYN L + + G D A ++ + L GR Sbjct: 283 QVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRL--DPILLGPF 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ + + + + GR+I+VFGCGGDRD+ KRP+M K++ + Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M + +D+++VAGKGHE Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D +++ E L Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479 >gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] Length = 909 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 149/481 (30%), Positives = 233/481 (48%), Gaps = 25/481 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR IQ G +FVA G+K DG F+ AI GA AI++ + + TP Sbjct: 17 HLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDI------VVLQTP 70 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +LVV N R+ L A YG I +A+TGT+GK+S A ++ + + IG Sbjct: 71 VLVVKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGT 130 Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 TI ++ LTTP + + + L+ L ++G+ V++EASS G++Q RLD +++ Sbjct: 131 LGTILPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIA 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL DH+DYH++ Q Y AK LF + + + D A + K + Sbjct: 191 GFTNLTLDHLDYHKSMQEYEEAKTSLFLRDGLECAIFNLD-DMAGVRMYEKSKASRNLGY 249 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + I ++ I + + L G +YN L+ AG+ + + Sbjct: 250 SILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLNV 309 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVDYAHTSNSLEMILKN---IR 377 ++E + + VPGR + V +YVDY+HT ++L +K ++ Sbjct: 310 SVEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVVK 369 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 I G++ VFGCGGDRD+ KRP+M K+A + AD +T DNPR+E+ I +I+ G Sbjct: 370 NIRGGKMACVFGCGGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKGAK 429 Query: 438 GF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R I AI +K D +++AGKGHE + NG K D +GL+ Sbjct: 430 KYSFSHIDRAYTILHAILNASKNDTILIAGKGHEDYQEI-NGVKHHFDDSHWA--GIGLM 486 Query: 497 L 497 L Sbjct: 487 L 487 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 66/386 (17%), Positives = 140/386 (36%), Gaps = 27/386 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR +++ IF+AI G DGH F+ I +VS ++ Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLET-ID--CIGAIVSKPNP--------KAKVRQ 541 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VD+T + A + ++AV G++GK++ + I + Sbjct: 542 FIVDDTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGN 601 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +++ + + + ++ +E S GL K TN Sbjct: 602 LNNHIGVPK--SLLSLTDNHRIAVFELGMNHPGEIEYLS-GLA-------KPTIAVVTNA 651 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H ++ ++ +A +F+ L + AI YS +++ + Sbjct: 652 QREHQEFMKSVEAVARENGSVFQS-LDADGVAIYPRSSPYSYIWDEQSRHCKSITFG--- 707 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + ++ + T+ VE + + + G+ + NAL A ++ GID + Sbjct: 708 EAGSVNATNISYDSEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYI 767 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 L + V GR + + Y +S+ + ++T+ + R +V+ G Sbjct: 768 ESGLAEFKAVKGRLQKHILKDGTVILDDTYNANPDSVIAAIDILKTLATPRTLVLGDMGE 827 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416 G +G A + ++T Sbjct: 828 VGVDGVQMHEEIGTYARENGIDNLLT 853 >gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] Length = 488 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 157/470 (33%), Positives = 244/470 (51%), Gaps = 12/470 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNT 90 V SDSR + G IFVA+ G EDG FIP A+ GA +V ++ Sbjct: 19 VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78 Query: 91 PILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ ++ R+ L A G IL VTGT+GK++ ++++ +G +G Sbjct: 79 RVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVLG 138 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 S ++ LTTP P+ + L+ + + GV +E SSH +DQ R+ G+ Sbjct: 139 TVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCGVPFAGA 198 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL +DH+D+H+ ++YF K RLF EL E + ADD + + +++ A Sbjct: 199 AFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCPRALSFG 258 Query: 268 LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G + ++ A ++ + +EG+ ++ PL G F N L L + G Sbjct: 259 LQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLTVQALALETG 318 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +D LE V GR E V NS+G ++VDYAHT ++L +LK +R RII Sbjct: 319 LDPGQFK-ALESFTGVCGRLERV-ENSQGLNVFVDYAHTPDALVNVLKALRGAGFKRIIT 376 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKG 443 VFGCGG+RD+ KRP+MG+ AD+A++T DNPR E+PE I +++ G+ + + Sbjct: 377 VFGCGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLPGLKEAREVLVEV 436 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R A A++ML K D L++AGKGHE I+ G K D +++RE+L Sbjct: 437 DRHAATARALDMLGKDDALLIAGKGHEDYQIIQ-GVKHHYSDQEVVRELL 485 >gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae CWL029] gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae J138] gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae TW-183] gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae CWL029] gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae J138] gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae TW-183] Length = 483 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 131/501 (26%), Positives = 217/501 (43%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++ ++ ++ DSR + G IF+A G + DG+ F Sbjct: 1 MDLKELLHGVQAKIYGKVRPL-------EVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+A GA AI S + ++ N + + +++ Y + Sbjct: 54 VDALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V ++ + S +G I + TTP+P L K L+ + Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q V +E SS GL R+ TN+ DH+D+H T + Y AK +LF + Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLV 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P I S+ + + + + + T+ Sbjct: 226 PPSGMVVINTDSPYASQCIESAK---APVITYGIESAADYRATDIQLSSSGTKYTLVYGD 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + G++ VYN L A A D +LE + PGR Sbjct: 283 QKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRL--DPVLMGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ +L + + GR+IVVFGCGGDRD+ KR +M ++ A+ Sbjct: 341 PVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERYG-FAV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPRSE PE I EI G + + +R +AI A+ + + +D++++AGKGHE Sbjct: 400 VTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEAY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D + E+L Sbjct: 460 QIFKHQTVA-FDDKQTVCEVL 479 >gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida KT2440] gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas putida KT2440] Length = 496 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 151/490 (30%), Positives = 228/490 (46%), Gaps = 22/490 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +F R+ I E++ DSR ++ G +F+A+ G K DG I A+ + AY Sbjct: 7 SKLFAHASRDPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAY 62 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 Q + ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 63 EEQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G IG T Q RLTTP PI + L+ L G V++E SSH L Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHAL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ ++ TNL RDH+DYH + +AY AK +LF + + DD + + Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDDFGR 240 Query: 255 EVMKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + ++ + + T+ + L Sbjct: 241 RLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQL 300 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N L A +A+ +L+ +L GR + +G + + VDYAHT Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL-VVVDYAHTP 359 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+EDP Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPS 419 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I +I G R EAI I DV+V+AGKGHE + NGE+ Sbjct: 420 RIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDF 478 Query: 484 VDCDIIREIL 493 D + L Sbjct: 479 SDLTEAEKAL 488 >gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] Length = 496 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 151/500 (30%), Positives = 227/500 (45%), Gaps = 42/500 (8%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI----------AQG 67 +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ QG Sbjct: 7 SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQG 66 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A ++ P++ V LS A R YG+ N++ VTGT+G Sbjct: 67 ASV--------------LPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV V Q G IG T Q RLTTP PI + L+ L G Sbjct: 113 KTSVTQLVAQALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKA 172 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++E SSH L+Q R+ ++ TNL RDH+DYH + +AY AK +LF + Sbjct: 173 VAMEVSSHALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVV 232 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVE 296 + DD + + + + ++ + + T+ Sbjct: 233 NL--DDDFGRRLAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTA 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F + N L A +A+ +L+ +L GR + +G + Sbjct: 291 QGERILRSQLLGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL 350 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VT Sbjct: 351 -VVVDYAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVT 409 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DDNPR+EDP +I +I G R EAI I DV+V+AGKGHE Sbjct: 410 DDNPRTEDPSRIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQ 469 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + NGE+ D + L Sbjct: 470 EI-NGERHDFSDLTEAEKAL 488 >gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] Length = 491 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 126/501 (25%), Positives = 216/501 (43%), Gaps = 27/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ L+ I E++++ V DSR ++ +F+ I G DGH F+ Sbjct: 1 MKVSTLLEGLKY-------ICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P I +GA+ + + + ++ V +TR ++ ++ +G E + + Sbjct: 54 PDVIRKGAK-------TLVVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTI 106 Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 T K + G IG + I + TTP + + + Sbjct: 107 GITGTKGKTTTTYMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR G G FTN+ DHI ++ + +R L Sbjct: 167 VDAGCDCVVMEVSSQGLMLHRTQGFVFDYGIFTNIEPDHIGPNEHKDFDDY--LRCKSML 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296 L + I+ DD + + +++ + V Sbjct: 225 LQQCRVGIVNRDDEHFERIIEGHTCQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +F +PG+F +YN+L A +C + +++ L+ + V GR E + + Sbjct: 285 LMEFPVEIDIPGKFSIYNSLTAIAICRHFNVSQENIIKALK-VARVKGRIEVIKVSDE-F 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + +LE +L +R R++ +FGCGG+R + +R MG+++ LAD+ I+T Sbjct: 343 TLMIDYAHNAMALESLLTTLREYHPHRLVCLFGCGGNRAKSRRYEMGEVSGRLADLTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I GI ++E +R EAI AI D++V+AGKGHE Sbjct: 403 SDNPRFEEPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G+K + +I EIL Sbjct: 463 QEIK-GKKYPMDERVLIAEIL 482 >gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 458 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 140/464 (30%), Positives = 227/464 (48%), Gaps = 23/464 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 ++SR ++ G F+AI DGH +I +AIA GA I+ + ++ Sbjct: 7 TNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEHGSYKVET----------II 56 Query: 95 VDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 V++TR++L L+ + ++ +TGT+GK++ QI + + +G Sbjct: 57 VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L L GV + +E SSH LD+ R+ G++ +FTN Sbjct: 117 YYGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH+T + Y NAK LF + + AII DD + + + ++N G Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNIII----G 231 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + ++ H ++ + G + +YN L+A L +G+ Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L +KL GR E + + I+VDYAHT +++ +LK+ +GRII + GCG Sbjct: 292 ILALNDKLKAPAGRMELLKYGTNS--IFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449 GDRD KRPIMGK AL+ +D I T DNPRSEDP+ I +I +G+ F + +R +AI Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ L D+L++ GKGHE I G K D + + + + Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452 >gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri A1501] gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas stutzeri A1501] Length = 487 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 228/482 (47%), Gaps = 14/482 (2%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + P + I E++ DSR ++ G +F+A+ G + DG + AI + AY Sbjct: 7 HLLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----ARGAAAVAYE 62 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI 136 + + ++ V + LS A R YG+ N+ + VTGT+GK+SV+ + Q Sbjct: 63 SEGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQA 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 R G IG T + R TTP I + L+ L +G V++E SSHGLD Sbjct: 123 LDRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLD 182 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ ++ FTNL RDH+DYH T +AY AK RLF + DD + + Sbjct: 183 QGRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGVPGLSCRVINL--DDGFGRA 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + S+ +++ + + + + PL G F V N Sbjct: 241 LAGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNV 300 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G + + +L L +L GR + +G R + VDYAHT ++LE +L Sbjct: 301 LAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPL-VVVDYAHTPDALEKVLTA 359 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R GR++ +FGCGGDRD GKRP+M ++A LAD +VTDDNPR+E PE+I ++ G Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILEDVRSG 419 Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 R +AI I N DV+V+AGKGHE + GE+ D + Sbjct: 420 FVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEI-RGERLPFSDIEEACTA 478 Query: 493 LG 494 L Sbjct: 479 LS 480 >gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] Length = 495 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 133/503 (26%), Positives = 218/503 (43%), Gaps = 21/503 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ L + Q +E +I+ + DSR + IFVAI G DGH ++ Sbjct: 1 MKLSELLTG----LEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A +G A VV+ + + +++VD++R LS ++ +G + ++ Sbjct: 57 DSAYQKGCRAFVVNDNMD-------LAEDAIMIIVDDSRNCLSHISANFFGNPSKELKVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK+++ ++++ + +SGL++ IG + + TTP L K + + Sbjct: 110 GVTGTKGKTTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV V++E SS GL R++ + G +TNL DHI + + Sbjct: 170 VDAGVKCVAMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFS 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + I D A + +G Sbjct: 230 LCRHGIINIDDDHASYMIDKATCDIETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDG 289 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PGEF VYNAL +GID +L L V GR E + + Sbjct: 290 QASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQVD-GRVEVIP-SIPDIT 347 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH SLE +L+ + R+I VFG G R +R +G +A L DI+I+T Sbjct: 348 VVLDYAHNGVSLENVLETLLKYKPRRLICVFGSIGGRSVLRRKELGDVAAKLCDISILTT 407 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNP EDP I +I ++ +R +AI IE+ D+++VAGKGHE Sbjct: 408 DNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKGHEKYQ 467 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 I+ +GE+ + + + + ++ Sbjct: 468 II-HGERVFYDEKAEVLKAIEIV 489 >gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/Jali20/OT] gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/Jali20/OT] Length = 483 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 136/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR + G IF+A G +G+ + Sbjct: 1 MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+A GA A++ S + ++ ++ + A+R Y + ++ Sbjct: 54 SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++V+ V+++ +RSG + IG I + TTP I L K + + Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ +E SS G+ R+ + +AG TN+ DH+D+H + + Y AK + F Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFAS- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP++ A++ D Y+ + + ++ + I +G Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F L GE VYN L + + G D A ++ + L GR Sbjct: 283 QVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRL--DPILLGPF 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +Y+DYAHT ++L+ + + + + GR+I+VFGCGGDRD+ KRP+M K++ + Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M + +D+++VAGKGHE Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I + D +++ E L Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479 >gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] Length = 487 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 235/472 (49%), Gaps = 14/472 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P I E++ DSR ++ G +F+A+ G ++DG + I A+ + A+ Sbjct: 8 LLPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAV----ARGAAAVAFEA 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + + + ++ V LS A R YG+ +++ VTGT+GK+SV+ + Q Sbjct: 64 EGAAPMHAESAVLVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T A + + TTP P+ + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGERCGIVGTLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ ++ FTNL RDH+DYH + +AY AK +LF + + DDA+ +E+ Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAWPNLRCRVINL--DDAFGREL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++AH++ S+ F++ + + + + + L G F + N L Sbjct: 242 AQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + + +L+ L +L GR + +G + + VDYAHT ++LE +L+ + Sbjct: 302 AVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAM 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR++ +FGCGGDRD+GKRP+M +A LAD+ VTDDNPRSEDP +I A+I G Sbjct: 361 RPHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGF 420 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R +AI I DVLV+AGKGHE + G + D Sbjct: 421 CAPEQVQFIHGRGDAIARLIAQAEAADVLVLAGKGHEDYQEI-TGVRHPFSD 471 >gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase [Staphylococcus pseudintermedius ED99] Length = 494 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N++++DSR +AG IFVA G D H F + QG + +VV+ A LQ Sbjct: 20 DIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + S LYG + + VTGT+GK+S+A+ + I ++ G S Sbjct: 75 --DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK + L ++ II ADD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFSTYLKSVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 Q + + P G F + N + A Sbjct: 253 PYESLTYGI--EQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRFNIANLMAAML 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 G V + + L V GR E + + + +DYAHT++ + ++ + Sbjct: 311 GVWVKGAPLETVTKVVADLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMAKLIDAVEPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPANDDPKMLTAELAKGATHDR 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AIE+ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri DSM 4166] Length = 487 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 228/481 (47%), Gaps = 14/481 (2%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + I E++ DSR ++ G +F+A+ G + DG + AI + AY Sbjct: 8 LLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----ARGAAAVAYES 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 + + ++ V + LS A R YG+ N+ + VTGT+GK+SV+ + Q Sbjct: 64 EGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 R G IG T + R TTP I + L+ L +G V++E SSHGLDQ Sbjct: 124 DRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ ++ FTNL RDH+DYH T +AY AK RLF + DD + + + Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGVPGLSCRVINL--DDGFGRAL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S+ +++ + + + + PL G F V N L Sbjct: 242 AGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + + +L L +L GR + +G R + VDYAHT ++LE +L + Sbjct: 302 AAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPL-VVVDYAHTPDALEKVLTAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR++ +FGCGGDRD GKRP+M ++A LAD +VTDDNPR+E PE+I ++ G Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSGF 420 Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +AI I N DV+V+AGKGHE + GE+ D + L Sbjct: 421 VNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEI-RGERLPFSDIEEACTAL 479 Query: 494 G 494 Sbjct: 480 S 480 >gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 486 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 217/472 (45%), Gaps = 24/472 (5%) Query: 41 QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTPILVVD 96 + G +F A+ G + G F A+ GA A++ A L D +LV D Sbjct: 2 RPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHD 61 Query: 97 NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI- 153 + R L A+++YG+ + IL VTGTSGK++ ++ +G ++ +G T Sbjct: 62 DPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRI 121 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + D+ TTP L L+ + GVTHV +E SSH L R+ G + G FTNL Sbjct: 122 AGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLS 181 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 +DH+D+H+ YF AK LF+ E + K V + G Sbjct: 182 QDHLDFHRDLDDYFQAKALLFDGRSEHEVVCT------DTDWGRKLVKPGTITVSTTGDA 235 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 + ++ G LPG F + NAL+A G+ A + + + Sbjct: 236 SWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIE 295 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 L ++ V PGR E V VDY+H ++ +L R GR+IVV GCGGD Sbjct: 296 RGLAEVDV-PGRMERVALGQ-DFTAVVDYSHKPGAVSAVLDAARAQAEGRVIVVLGCGGD 353 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNR 445 RD KRP+MG+ A + + IVTDDNPRSEDP IRA ++ G IE+G+R Sbjct: 354 RDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDR 413 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 EAI A+ + D++VVAGKGHET V G D + + L L Sbjct: 414 REAIAEAVARASSGDIVVVAGKGHETGQEVA-GVVHPFSDREELAAALRRRL 464 >gi|187479354|ref|YP_787379.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella avium 197N] gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bordetella avium 197N] Length = 939 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 237/474 (50%), Gaps = 19/474 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR + G +F+A G + DG +I A+ GA ++ S + ++ +++ Sbjct: 29 HLRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDA----LTQSVVADSR 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V R L A YG+ +LAVTGT+GK+S ++ + R G IG Sbjct: 85 VLPVAGLRGMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGT 144 Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + LTTP I L + ++ + G V++EASS GL+Q R+D ++LIA Sbjct: 145 LGGLLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAA 204 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +TNL RDH+DYH T + Y AK LF P A+I ADDA + ++ + Sbjct: 205 GYTNLTRDHLDYHGTMEQYEAAKALLFNW--PGLQAAVINADDAAGRRLLAKLPVGLASA 262 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + + + A + Q T++ + L G V N L+ AGL + +G Sbjct: 263 YAIDHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGW 322 Query: 328 DSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI- 384 A V + V GR + V +++G + VDYAHT ++LE L +R + R Sbjct: 323 PLAAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVDYAHTPDALERALLALRPVAQARNG 382 Query: 385 --IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439 + +FGCGGDRD GKRP MG+IA +LAD IV+ DNPRSE P+ I +++ G+ Sbjct: 383 ALVCLFGCGGDRDPGKRPEMGRIAGELADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLAL 442 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI +DV+++AGKGHET + G + D + R L Sbjct: 443 RAESDRALAILHAIWDSWPEDVVLLAGKGHETYQEIA-GRRLAFDDREWARAAL 495 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 80/423 (18%), Positives = 152/423 (35%), Gaps = 32/423 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55 L+ E +++ + + +R+ + VS+D+R + A IFVAI G D Sbjct: 466 LLAGKGHETYQEIAGRRLAFDDREWARAALLLPHVAGVSTDTRSVAADEIFVAISGENFD 525 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH ++ + A + S+ P LV+ TR L A+ + Sbjct: 526 GHRYL--------AQAQAAGACAAVVAHRVSDSSLPQLVLGETRHALGRLATAWRARFSL 577 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++AVTG++GK++ + I + ++ + ++ P+ L Sbjct: 578 PVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNFNNDI-------GLPLTLL---R 627 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 V + + G + + N R+H ++ +A A+ Sbjct: 628 LREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGVEAV--ARENGAV 685 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 E +Y D + A + G ++ +K+ + + Sbjct: 686 LSALPEDGVAVYPGDDVYTPIWDELAGARRVLRFGLQPGLDVYAQKIRPDASGTLCQVVT 745 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D + P+PGE + NAL A +A G A + LE V GR + T++ Sbjct: 746 PMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAVKGRMQRKETSNGT 805 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413 I Y +S+ + ++ + + R++V+ G GD +G A D A Sbjct: 806 ILIDDTYNANPDSVRVAIEVLAQLPGPRVLVLGDMGEVGDEGPAMHREVGGYARDQGIDA 865 Query: 414 IVT 416 +VT Sbjct: 866 MVT 868 >gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 497 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 144/506 (28%), Positives = 244/506 (48%), Gaps = 24/506 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L Y FP + N ++K + +S DSR + + +F+AI G K+DG+ FI Sbjct: 1 MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ + AI+ + + +N PIL + +S A+R+Y + + I+ Sbjct: 53 FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V + Q + G +G + + TT S I + L Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + V++E SSHGL Q+R+ I G FTNL +DH+DYH+ + Y +AK F Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFS-- 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQQV 291 K I+ A+D Y+K+ +++ + Y K+I+ + N V Sbjct: 231 QHKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDV 290 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 L G F + N L++ + + + ++ +L + GR + Sbjct: 291 EFESSWGQGILSTCLIGYFNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKF-D 349 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 ++ +DYAHT ++L+ L I++ +I +FGCGG+RDQ KRP+MG I+ +AD Sbjct: 350 VFGKPKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGCGGERDQTKRPLMGSISEKIAD 409 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T+DNPR+E+ KI EI+ G I NR +AI + N D++ ++GKG Sbjct: 410 RVIITNDNPRNENQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANIDDIIFISGKG 469 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HE I+ N + D ++ ++L Sbjct: 470 HENQQIIKN-KIINYSDQKVVIKLLE 494 >gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] Length = 555 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L QL ++ ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 66 LADLAGQLGAEQPGSA-AEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVA 124 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + +A P LVVD+ R + A+ +YG+ + + +TGTSGK++ Sbjct: 125 VLTDPSGAERAAAA----GLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTT 180 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + + + TTP L + + +GV V +E Sbjct: 181 TAYLVEGGLRTVRSTGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVME 240 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG F NL +H+++H + YF AK +LF + + Sbjct: 241 VSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNL-- 298 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307 DD Y + ++ A + G+ + V T+ + PLP Sbjct: 299 DDEYGRRLVDEATVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPLP 358 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A GID + + + VPGR E V VDYAH ++ Sbjct: 359 GSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 417 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +LK +R +T GR+ +V GCGGDRD KR MG L+D A++T DNPRSEDP Sbjct: 418 AVESVLKALRKVTEGRLHIVLGCGGDRDTTKRAPMGAAMARLSDTAVLTSDNPRSEDPLA 477 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G + +R AI + D ++VAGKGHE + G Sbjct: 478 ILATMLEGAASVPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKGHEQGQDIA-GV 536 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 537 VRPFDDRQVLREAI 550 >gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] Length = 533 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 220/474 (46%), Gaps = 18/474 (3%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ ++ ++ +F A+ G++ G + QA+ +GA A++ A + + + T + Sbjct: 23 TGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAAVLTDRAGA-ELLAGTDLGSV 81 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +LVV+ R+ L A +LYG ++ VTGTSGK++ ++ G S IG Sbjct: 82 ALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTTCYLLEAALAADGSRSAVIG 141 Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + LTTP L L+ + +GV V++E SSH L R+ G + G Sbjct: 142 TVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFAVG 201 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL +DH+D+H + YF AK LF+ D Y + A Sbjct: 202 AFTNLSQDHLDFHHDMEDYFRAKAMLFDGRAGAHVI---DVDTEYGARLAAEHPEALTVS 258 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + A + V + +PG F V NA VA A+G Sbjct: 259 DRPGAADWSVEMVTLAANGVQHVVLSGPGKRQVTLDLAIPGAFNVGNAAVALACVDALGR 318 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D + L + V PGR E V VDYAH ++ +L I +G +IVV Sbjct: 319 DVQQAADALATVVV-PGRMERVDAGQ-DFLAVVDYAHKPGAVAAVLDAIGQGLAGPLIVV 376 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GF 439 G GGDRD GKRP+MG + AD+ IVTDDNPRSE P IRA+++ G Sbjct: 377 LGAGGDRDTGKRPMMGAESAARADVLIVTDDNPRSERPADIRAQVLAGAAPVADRRPCQV 436 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E G+R AIR A+++ +V+AGKGHE + +G D D +R L Sbjct: 437 LEIGDRRAAIRRAVQLAGTGGAVVIAGKGHEQGQEI-DGVVHPFSDRDELRAAL 489 >gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1] Length = 496 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 152/490 (31%), Positives = 229/490 (46%), Gaps = 22/490 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ + AY Sbjct: 7 SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAY 62 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 Q + ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 63 EEQGANVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G IG T Q RLTTP PI + L+ L G V++E SSH L Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHAL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ ++ TNL RDH+DYH + +AY AK +LF + + DD + + Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDDFGR 240 Query: 255 EVMKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + ++ + + TI + L Sbjct: 241 RLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQL 300 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N L A +A+ +L+ +L GR + +G + + VDYAHT Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL-VVVDYAHTP 359 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+EDP Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPL 419 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I +I G R EAI I DV+V+AGKGHE + NGE+ Sbjct: 420 RIFDDIRPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDF 478 Query: 484 VDCDIIREIL 493 D + L Sbjct: 479 SDLTEAEKAL 488 >gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12D] gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D] Length = 514 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 228/482 (47%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V GN + DG IPQAI GA A++ ++ Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYTMPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + IL VD + A++ YG ++ VTGT+GK+S + ++ Q + G Sbjct: 88 APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L+ L G +++E SSHGL+Q R+DG Sbjct: 148 AVVGTLGTGFVDGLAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTC 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + ++ Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + +++ V A + P G F V N L Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +A G+ + HLEKL V GR E G G + VDYAHT ++LE L+ + Sbjct: 328 VLGALLAAGVPWPDAIAHLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G + VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I EI Sbjct: 387 PITEARGGNLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D + +R Sbjct: 447 GMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] Length = 514 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 156/482 (32%), Positives = 224/482 (46%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V GN + DG IPQAI GA A++ + Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +L VD + A++ Y ++ VTGT+GK+S + ++ Q R G Sbjct: 88 APVRVLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L L G V++E SSHGL+Q R DG + Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGTR 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + ++ Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + ++ V A I P+ G F V N L Sbjct: 268 AVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVSNQLG 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L + Sbjct: 328 VLGVLLMAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLCALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I I Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ ++ +R AI A+ + DV+VVAGKGHE+ G K+ D + +R Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQETA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] Length = 491 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 231/476 (48%), Gaps = 15/476 (3%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L + I + DSR ++ G +F+A+ G+ +DG F+ QA A GA A +V Sbjct: 16 LEGLAAEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDEL 75 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135 L+ P++V+ N R L A R + + + AVTGT+GK++V+ + Sbjct: 76 PLRLSP------LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTNGKTTVSQLFAR 129 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + G IG + TTP I L + L+ + Q V VS+E SSH L Sbjct: 130 LVRSVGYDCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHAL 189 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 Q R++ + + FTNL RDH+DYH Q+Y AK RLF AI+ ADD +S+ Sbjct: 190 HQGRVNTLDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFAF--ESLRTAILNADDPFSR 247 Query: 255 EVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +R + + L + + + PL G+F Sbjct: 248 HLAQRVPTGVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAV 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A + G+ V+E +E L VPGR E + G + +DYAHT ++L +L Sbjct: 308 NLLAALTAALQAGLPFKAVMEAVESLASVPGRMEPLRVAG-GPLVVIDYAHTPDALRQVL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R G +I VFGCGGDRD+GKRP+M + AD A++T DNPRSE+P I A+I Sbjct: 367 LTLREQCQGSLIAVFGCGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIADIQ 426 Query: 434 HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + ++ +R EAIR AIE +D +++AGKGHE IV E+ D + Sbjct: 427 ASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKGHEDYQIVG-QERLPFSDTAV 481 >gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] Length = 544 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 151/501 (30%), Positives = 239/501 (47%), Gaps = 26/501 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + Q E + V D R I +F A+ G + G F A+ +GA AI+ Sbjct: 37 LEWVGLPGSQSSEVVVKGV--DLRAQGIVTDDLFAALPGARTHGAQFAVDALGRGATAIL 94 Query: 73 VSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 A +A + P+LV N R L ++ +YG+ E + + +TGTSGK++ Sbjct: 95 TDEAGLELIEAADKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTT 154 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ +G +G T + LTTP L + ++ QG+ V + Sbjct: 155 TSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVM 214 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246 E SSH L R+DGI+ G+FTNL +DH+D+H+ + YF AK RLF+ + A++ Sbjct: 215 EVSSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVV 274 Query: 247 YADDAYSKEVMK-----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 DD + + + + + S + +V ++ + +G+ + Sbjct: 275 CVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWP 334 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 LPG + V NA +A + A G+D + L + V PGR + + VD Sbjct: 335 VSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDV-PGRVQRIDRGQS-FLAVVD 392 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH +LE ++ +R GR+ VV G GGDRD GKR +MG+ AD+ IVTDDNPR Sbjct: 393 YAHKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRALMGEAGARGADLLIVTDDNPR 452 Query: 422 SEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +EDP KIRA ++ G E G+R AI A+ DV++VAGKGHE Sbjct: 453 TEDPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKGHEVGQ 512 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + +G K D +++ E++G Sbjct: 513 EI-DGVKHPFDDREVLGEMIG 532 >gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M12] gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Xylella fastidiosa M12] Length = 491 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 148/488 (30%), Positives = 217/488 (44%), Gaps = 12/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ Sbjct: 3 LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + V R L A R +G + ++ VTGT+GK+S Sbjct: 63 PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q R G+ S G TTP + L + L L G V++E SS Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+DG+ FTNL RDH+DYH + Y AK RLF + + + Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDLFG 237 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 V G+ + + + + + PL G F Sbjct: 238 LRLLHGLAKGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L AG+ A+ + + L L + GR +G + VDYAHT ++L Sbjct: 298 VDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 357 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED + I A+ Sbjct: 358 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 417 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G + +R AI A+ + + +DV+++AGKGHE V G + D ++ Sbjct: 418 ILAGFVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDTEV 476 Query: 489 IREILGLI 496 +L + Sbjct: 477 AMRVLAAM 484 >gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] Length = 495 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 133/484 (27%), Positives = 213/484 (44%), Gaps = 10/484 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++ + + + +S DSR +AG +F+ + G+ D H IP+ + +G VV Sbjct: 8 LSEAKVLRGDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVE 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASF 132 R + I+ V+N RK L+ ++ + + +L + T K AS Sbjct: 68 KNLPDLPKEMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGKTTTASM 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V+ I +G + IG T + + R TTP L + + +G V +EASS Sbjct: 128 VRAILTEAGYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVVMEASS 187 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G HR DGI G FTN+ DHI ++ + + K + AD + Sbjct: 188 QGFKMHRTDGILFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIFTQSKTGLVNLDADFS 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + +D++ LPG + Sbjct: 248 EEFMENAECPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDWEIWNHLPGRYN 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYNAL A L +GI +V L K+ V GR E V G + VDYAH + ++ Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQV-NGRMEVVLQRG-GYTVLVDYAHNAMGMKN 365 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ ++ R+IVVFGCGG+R + +R MG++A ++AD I+T DN R E I ++ Sbjct: 366 LLETLKAYKPKRLIVVFGCGGNRAKERRYGMGEVAGEMADFTILTADNSRYEKTMDIISD 425 Query: 432 II----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I +++ +R EAIR A+E + D++ V GKGHE + V NG VD + Sbjct: 426 IESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKGHEEYNEV-NGTFTRFVDRE 484 Query: 488 IIRE 491 +I E Sbjct: 485 VILE 488 >gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Azotobacter vinelandii DJ] gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii DJ] Length = 487 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 230/470 (48%), Gaps = 14/470 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E++ DSR ++ G +F+A+ G ++DG IP A+ + AY + Sbjct: 18 IRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDAL----ARGAAAVAYEAAGAPSFADGG 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + LS A R YG+ ++ VTGT+GK+SV+ + Q G I Sbjct: 74 VPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDLLGERCGII 133 Query: 148 GPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G Q R TTP PI + AL+ L G VS+E SSH L Q R+ + Sbjct: 134 GTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAVSMEVSSHALAQGRVSALDFDV 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH + AY AK RLF + + DD + + + A+ + Sbjct: 194 AIFTNLSRDHLDYHGSMDAYGAAKARLFAWPGLRCRVLNL--DDPFGRLLAGEANASRLI 251 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S+ + +H ++ + ++ + PL G F + N L G + + Sbjct: 252 GYSLESRSAQVHCRRAHFDEQGVRAEVATPQGEGLLHSPLLGRFNLSNLLAVVGALLGLD 311 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +L + +L GR + +G ++ + VDYAHT ++LE +L+ +R GR++ Sbjct: 312 YALDEILRVVPQLQAPAGRMQRLGGGAKPL-VVVDYAHTPDALEKVLEALRPHVRGRLLC 370 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443 +FGCGGDRD+GKRP+M +A LAD ++TDDNPRSE PE+I A+I GI Sbjct: 371 LFGCGGDRDRGKRPLMAAVAERLADALLITDDNPRSESPEQIFADIRSGIGVPEKVTCLH 430 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +AI I + DVL++AGKGHE + NG ++ D + + L Sbjct: 431 GRGQAIARLIAGADASDVLLLAGKGHEDYQEI-NGVRQPFSDIEEAAKAL 479 >gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M23] gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23] gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 491 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 216/488 (44%), Gaps = 12/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ Sbjct: 3 LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + V R L A R +G + ++ VTGT+GK+S Sbjct: 63 PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q R G+ S G TTP + L + L L G V++E SS Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+DG+ FTNL RDH+DYH + Y AK RLF + + + Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFG 237 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 V G+ + + + + + PL G F Sbjct: 238 LRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L AG+ A+ + + L L + GR +G + VDYAHT ++L Sbjct: 298 VDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 357 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED + I A+ Sbjct: 358 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 417 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G + +R AI AI + + DV+++AGKGHE V G + D ++ Sbjct: 418 ILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTEV 476 Query: 489 IREILGLI 496 +L + Sbjct: 477 AMRVLAAM 484 >gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12J] gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J] Length = 514 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 157/482 (32%), Positives = 228/482 (47%), Gaps = 26/482 (5%) Query: 32 EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA V GN + DG IPQAI GA A++ ++ Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAE----AHGYAMPAD 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + IL VD + A++ YG ++ VTGT+GK+S + ++ Q + G Sbjct: 88 APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T TTP I L ++L+ L G +++E SSHGL+Q R+DG + Sbjct: 148 AVVGTLGTGFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTR 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYH T Y AK RLF + ++ A + +V Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWQGLRAAVINRDDAAGVRLLQNARADVE 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + +++ V A + G F V N L Sbjct: 268 TIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +A G+ + LEKL V GR E G G + VDYAHT ++LE L+ + Sbjct: 328 VLGALLAAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386 Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I EI Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D + +R Sbjct: 447 GMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505 Query: 492 IL 493 L Sbjct: 506 AL 507 >gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] Length = 495 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 216/488 (44%), Gaps = 12/488 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ Sbjct: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + V R L A R +G + ++ VTGT+GK+S Sbjct: 67 PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q R G+ S G TTP + L + L L G V++E SS Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 181 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+DG+ FTNL RDH+DYH + Y AK RLF + + + Sbjct: 182 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFG 241 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 V G+ + + + + + PL G F Sbjct: 242 LRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L AG+ A+ + + L L + GR +G + VDYAHT ++L Sbjct: 302 VDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 361 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED + I A+ Sbjct: 362 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 421 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G + +R AI AI + + DV+++AGKGHE V G + D ++ Sbjct: 422 ILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTEV 480 Query: 489 IREILGLI 496 +L + Sbjct: 481 AMRVLAAM 488 >gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured marine microorganism HF4000_APKG2M17] Length = 492 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 216/473 (45%), Gaps = 25/473 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + DSR + + FVA+ G DGHLFI +A+ GA AIV S ++ + Sbjct: 27 FDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGPDIAL--- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V ++R+ L+ AS + + AVTGT+GK++VA+ V + + S I Sbjct: 84 -----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFI 138 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + + TTPS + + + L + + G +H S+E SSH +DQ R+ + Sbjct: 139 GTTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRDVDV 198 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH T + YF AK +LF+E LP + A++ DD K + + Sbjct: 199 ALFTNLTRDHLDYHSTFELYFAAKKKLFDE-LPDGAVAVVNVDDPRGKGIAADTTGSVIT 257 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S + ++ +TI + F + L ++ Sbjct: 258 FGSDDHSDVSFSIEGNELSGL--DLTIDGHRRRFQLAGTYNASNLAAAYAASRALGLSAL 315 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRI 384 + V GRFE + G + VDYAHT ++L+ +L+ + Sbjct: 316 ESIDALSSS----PPVEGRFERMQFEG-GTMVIVDYAHTPDALKNVLEATLESMRPGSTL 370 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441 +FGCGGDRD GKR MG IA LA IVT DNPR+EDP+ I +I G+ Sbjct: 371 WCIFGCGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDIRQGLLKPEDAFW 430 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R +AI A + D LV+AGKGHET ++ D + R Sbjct: 431 EIDRRDAISRAAASMVSGDTLVLAGKGHETYQVIGT-TNIHFDDREEARLAFS 482 >gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 492 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 226/482 (46%), Gaps = 18/482 (3%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 ++ P ++ + I ++D+R ++ G +F AI G G + A+A GA A++ + Sbjct: 16 IASCPAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDTDG 75 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQ 135 + + ++ P++++ + + + A+ +YG + AVTGT+GK++ A + Sbjct: 76 AD-----FVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDH 130 Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G ++ IG + I+ +LTTP P L L+ L +G T + +E SSH + Sbjct: 131 ILNTLGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAI 190 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 Q R++ I FTNL +DH+DYH T YF AK LF E + AI + + Sbjct: 191 AQGRIESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAITDT--PWGE 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E++KR + + S Q + L Sbjct: 249 ELVKRGNERVAALASQPDQPAGWRFTGQADGTLTLRGENWGTITTSTNLPGDFNIANAAL 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 A+ + L ++ PGR E V R I VD+AH ++L + Sbjct: 309 AIAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPR---IVVDFAHNEDALTKAI 365 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R T G +IV+ G GDRD KRP+M K + AD+ ++TDD+P SEDP IRA++I Sbjct: 366 EALRPSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPHSEDPAHIRADLI 425 Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GIP +IE +R EAI + +D +++AG+GHET+ + NG D ++ R Sbjct: 426 AGIPTDTNWIEIADRREAITAMVTDACAEDTILIAGRGHETIQDM-NGTLVNLDDREVAR 484 Query: 491 EI 492 E Sbjct: 485 EA 486 >gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 494 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N++++DSR +AG IFVA G D H F + QG + +VV+ A LQ Sbjct: 20 DIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + S LYG + + VTGT+GK+S+A+ + I ++ G S Sbjct: 75 --DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK + L ++ II ADD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFSTYLKSVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 Q + + P G F + N + A Sbjct: 253 PYESLTYGI--EQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRFNIANLMAAML 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 G V + + L V GR E + + + +DYAHT++ + ++ + Sbjct: 311 GVWVKGAPLETVTKVVADLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMAKLIDAVEPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPANDDPKMLTAELAKGATHDR 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AIE+ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIGL 480 >gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acaryochloris marina MBIC11017] gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acaryochloris marina MBIC11017] Length = 499 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 139/499 (27%), Positives = 230/499 (46%), Gaps = 16/499 (3%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+ L+ + + + + +I ++++S +Q G++F+ + G + DG F Sbjct: 5 KLRTLLA-ELSTHLWETPPTDHPALDAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFWK 63 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 AI GA A +VS D +L + + + + A+ Y + + + + Sbjct: 64 SAIEAGAAAALVSDQVDRADVGTH-----CVLALKDMPRACAEVAATFYDQPSQKLKLVG 118 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT+GK++ ++ + + + G + TTP + L + LS Sbjct: 119 MTGTNGKTTTTHLIEYLLTTAQAPTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLSDAV 178 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E SSH L Q R+ G + F+NL +DH+DYHQ + YF AK LF Sbjct: 179 AAQCQFGVMEVSSHALAQKRVLGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFSPDY 238 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + I D + + ++ + + + Sbjct: 239 LQGRAII--NIDDVYGQRLVDQIGPNQCWTYSIEGPADLYTSGLSYETAGVKGQLHTPKG 296 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGR 357 +F L G+F V N L A G + +G+ + L + VPGR + + + + Sbjct: 297 TVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDIS 356 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +SLE +LK R G++ VFGCGGDRD+ KRP+MG+IA L+D AIVT Sbjct: 357 VIVDYAHTPDSLENLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQAIVTS 416 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP++I +++ GIP I + +R AI+ AI D +++AGKGHE I Sbjct: 417 DNPRTEDPQQILQDVLAGIPMEVKPIVEVDRRVAIQAAIAQAKPGDTILIAGKGHEDYQI 476 Query: 475 VTNGEKKMSVDCDIIREIL 493 + EK D + + L Sbjct: 477 LGT-EKIHFDDREEAQAAL 494 >gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 486 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 204/500 (40%), Gaps = 28/500 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ I + +I ++ DSR G +FV +VG DGH F Sbjct: 1 MKLNELVR----------HIDHTGASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFA 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A QG A +V + ++ +V +TR L++ + YG E +I+ Sbjct: 51 RSAYDQGCRAFLVEHTLD-------LPADVAQIVTQDTRAALAVIGADFYGNPAEQLHII 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYL 177 +TGT GK++ A I +GLS IG + + TTP + L + + Sbjct: 104 GITGTKGKTTTALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKM 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V HV +E SS L HR+DGI +FTNL DHI + + Sbjct: 164 LDANVHHVVLEVSSQALRHHRVDGIPFEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFA 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISV 295 + ADDA S + + T Sbjct: 224 EYNARVMVYNADDAVSDYMRAGFAGQQVSFGIGHDADYRAVDLAQYRSETALGIDFTCEH 283 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ PG F +AL A LC A G+ + L V GRFE V G Sbjct: 284 GGEATPVRVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAH-TPVEGRFEVV-EGLPG 341 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDY+H +L LK +R R+I VFG G R Q +R + + A AD +I+ Sbjct: 342 RTFIVDYSHNGLALTSALKTLRAYQPRRLICVFGSVGGRTQVRRRELAEAASAWADYSIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNP EDP I +I + + +R EAIR A+ M D+++ AGKGHE Sbjct: 402 TSDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKGHEDY 461 Query: 473 HIVTNGEKKMSVDCDIIREI 492 ++ G+K V+ D+IRE Sbjct: 462 QLIQ-GKKVPFVERDLIREA 480 >gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 514 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 145/514 (28%), Positives = 224/514 (43%), Gaps = 38/514 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K F EL+ ++ I+ V+ DSR + G +FVAI G DGH +I A+ QGA Sbjct: 2 KSFAELLLHVTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A+V D + P +V + + LS A+ Y +P L V G +G Sbjct: 62 VAVVYD------DPHQAPPATIPSALVADAKVALSPIAAAFYD-YPAQQLEVVGITGSKG 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + S +G ST +A R +TP + + L + G Sbjct: 115 KTTTTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGC 174 Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----- 235 + VE++SHGL +RL TN+ +H+DYH T + Y K +LF+ Sbjct: 175 RYAVVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATS 234 Query: 236 --------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + P E AI+ ADD ++ + A + + + ++ + Sbjct: 235 PSQKSILGQPTPVEKVAIVNADDPHAAQFRAAAGEQVRHLSYAIHAEADLRATEIVSTSK 294 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + T +F L G F VYN L A +C+A G+D A ++ LE + + GR E Sbjct: 295 GLRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRME 354 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + + VDYAH +S E ++ +R +T GR+I VFG G+RD KRPI G+IA Sbjct: 355 QV-ELGQPFSVLVDYAHNPDSFEQVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQGQIAA 413 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQ 459 D+ +TD++PR+ED +I EI G +R AI A+ Sbjct: 414 KWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQALATAQAG 473 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV+++ GKGHE I +G+ + + L Sbjct: 474 DVVLLLGKGHEGNIIYASGDIEW-NEHAEAERAL 506 >gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Weiss] gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum MopnTet14] gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 483 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 239/504 (47%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR G IF+A G +G+ + Sbjct: 1 MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+ GA AI+ S + +V ++ + A+R Y + ++ Sbjct: 54 GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V++ +++ + G + +G I + TTP I L K + + Sbjct: 106 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ VE SS GL R+ + +AG TN+ DH+D+H + + Y AK +LF Sbjct: 166 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS- 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP+ A++ +D Y++ ++ + G + I +G Sbjct: 225 LPEHGVAVVNSDCEYAQSFLEISPARGVSYAVHQEADY--RAVNLKFSSLGSTFDILYQG 282 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F L GE VYN L A + I G D A ++ ++ L GR E S Sbjct: 283 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLE--PVLSGPC 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ + K + + GR+I+VFGCGGDRD KRPIM K+A ++ Sbjct: 341 PIYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETYG-FSV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M +D+++VAGKGHE Sbjct: 400 VTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVY 459 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I + D +++ E L I Sbjct: 460 QIFKHQTIV-FDDREVVCEALASI 482 >gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] Length = 486 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 147/504 (29%), Positives = 239/504 (47%), Gaps = 30/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ ++ ++ P + ++ DSR G IF+A G +G+ + Sbjct: 4 MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+ GA AI+ S + +V ++ + A+R Y + ++ Sbjct: 57 GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V++ +++ + G + +G I + TTP I L K + + Sbjct: 109 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q ++ VE SS GL R+ + +AG TN+ DH+D+H + + Y AK +LF Sbjct: 169 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS- 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP+ A++ +D Y++ ++ + G + I +G Sbjct: 228 LPEHGVAVVNSDCEYAQSFLEISPARGVSYAVHQEADY--RAVNLKFSSLGSTFDILYQG 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F L GE VYN L A + I G D A ++ ++ L GR E S Sbjct: 286 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLE--PVLSGPC 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IY+DYAHT ++L+ + K + + GR+I+VFGCGGDRD KRPIM K+A ++ Sbjct: 344 PIYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETYG-FSV 402 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I A+I G ++ + +R AI AI M +D+++VAGKGHE Sbjct: 403 VTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVY 462 Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496 I + D +++ E L I Sbjct: 463 QIFKHQTIV-FDDREVVCEALASI 485 >gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces bingchenggensis BCW-1] Length = 544 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 151/511 (29%), Positives = 234/511 (45%), Gaps = 32/511 (6%) Query: 11 FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 EL +QL I + + + ++ DSR ++ G ++ A+ G + G F QA Sbjct: 35 LRELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQA 94 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVT 121 GA A++ + + + P+LVV+N R + A+ +YG+ + + +T Sbjct: 95 ADLGAVAVLTDPGGADR----AAATGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGIT 150 Query: 122 GTSGKSSVASFVQQICQR-----SGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175 GTSGK++ A V+ + G + IG S I + TTP L + Sbjct: 151 GTSGKTTTAYLVEGGLKAAAAKGDGSLTGLIGTVESRIGDERIKSERTTPEATDLQALFA 210 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + +GV +++E SSH L R+DG FTNL +H+++H + YF AK +LF Sbjct: 211 VMRERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFT 270 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + A+I DD Y K ++ + + G+ V + TI Sbjct: 271 K--ARSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILG 328 Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + PLPG F V N L A GID + + + VPGR E V Sbjct: 329 PNGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQ- 387 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAH ++++E +L+ +R +T GR+ V GCGGDRDQ KR MG AD A+ Sbjct: 388 PYLAVVDYAHKTDAVESVLRALRKVTEGRLHAVLGCGGDRDQQKRGPMGAAVARYADTAV 447 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR------IEAIRTAIEMLNKQDVLVVAG 466 +T DNPRSEDP I A ++ G E+G+ +AI A+ D ++VAG Sbjct: 448 LTSDNPRSEDPLAILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPGDTVLVAG 507 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 KGHE + G + D ++RE + L + Sbjct: 508 KGHELGQDIA-GVVRPFDDRQVLREAIELAI 537 >gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] Length = 494 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 14/471 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++ G FVA+ G +I AI GA I++ S Q + RS Sbjct: 24 IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESE---QAGECSERSG 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I+ V + L A R + + + + VTGT+GK+SV ++ Q+ Q +G + Sbjct: 81 ALIVPVPELKVRLGKLADRFFEYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCGVL 140 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + Q TTP + + L+ + + G ++E SSH LDQ R+D + L A Sbjct: 141 GTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRIDRLTLTA 200 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH + AY AK +LF + +I DD + +++ + R Sbjct: 201 AVFTNLTRDHLDYHGSMAAYGEAKAKLFSR--EELRFVVINVDDPFGRKLYHQLEGKCDR 258 Query: 267 VLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + LK+ CA+ N + + +F PL G F N L A +A+ Sbjct: 259 LRFSLHEPQAELWLKEFCALDNGFRAVLDGRWGEFTIEAPLMGRFNASNVLAAVATVMAL 318 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+D V + +L GR + G R VDYAHT ++L L +R SGR+I Sbjct: 319 GVDVTQVQHGVRRLVPPAGRLQVFTAGD-GARAVVDYAHTPDALNNALAALRPHVSGRLI 377 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFGCGGDRD GKRP M + A + AD+ IVTDDNPR+E P I A+I+ G Sbjct: 378 CVFGCGGDRDSGKRPEMAQQAENGADLVIVTDDNPRTETPSAITADIMAGFIAPEKIQLI 437 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI A+ + D+++VAGKGHE + G K D + + + L Sbjct: 438 HSRAQAIAAALALAGPDDLVLVAGKGHEDYQDIA-GCKYPFSDSEQVTQAL 487 >gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] Length = 493 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 143/501 (28%), Positives = 231/501 (46%), Gaps = 29/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + +++ + +I E+++DSR + AG +FV I G DGH F+ Sbjct: 2 MKLTKLLERLEYKVVQGND-------DIEITELTNDSRRVCAGSVFVCISGAVVDGHEFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + + +GA+A++V + + ++ V++TR L+L ++ +G E ++ Sbjct: 55 KEVLEKGAKAVIVEKEVKAPE-------HVTVIKVEDTRYALALASAAYFGYPAEQLKVI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ V+ I + G IG + I + TTP + + + Sbjct: 108 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLG DHI + + + L Sbjct: 168 VDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISV 295 L K+ I D E + R + V Sbjct: 225 LFKQCRIGIANVDDPYFEDVFRGATCQIETFGFAQKADLRAADTKLVSRPGYLGVSYHVS 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 DFD +PG F VYN+L A +C + +++ K+ V GR E V + Sbjct: 285 GLMDFDVEIDIPGTFSVYNSLTAIAVCRHFDVPVE-MIKKALKVAKVKGRIEMVKVSE-D 342 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+ Sbjct: 343 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRAKARRYEMGEVSGKLADLTII 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+P+ I +I GI ++E +R EAIR A++ DV+V+AGKGHE Sbjct: 403 TSDNPRFEEPQDIIDDIKIGIGKTDGKYVEICDRKEAIRYAVDHAEVGDVIVLAGKGHED 462 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 + G K + +I E+ Sbjct: 463 YQEIK-GVKYDMDERVLIAEV 482 >gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 147/485 (30%), Positives = 228/485 (47%), Gaps = 34/485 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++SDSR + G +F A VG+ DG +I A+ +GA A+V +A F+ + + P Sbjct: 24 LTSDSRRVAPGDVFFAYVGD-ADGRSYIADAVERGAAAVVYEAAG----FTWPAQIDVPH 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG 148 L V + + A+ YG+ + +L AVTGT+GK+S A ++ ++ IG Sbjct: 79 LAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIG 138 Query: 149 PTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S TTP + L ++L L+ V +++EASS GL Q R++G+ Sbjct: 139 TLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNGM 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN RDH+D+H Q Y +AK +LF+ K A++ DD + ++ Sbjct: 199 HVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKH--AVVNLDDDMGQRLLPLLAE 256 Query: 263 AGCRVLSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V+ + ++ + H + L G F V Sbjct: 257 RKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVDSPFGSGQVKTQLVGRFNVS 316 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G+ + G+ V+ L PGR + G I +DYAHT ++L+ L Sbjct: 317 NVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFGGPDVPL-IVIDYAHTPDALDKTL 375 Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +R + + R + VFGCGGDRD GKRP MG+IA AD ++T DNPRSEDP+ I Sbjct: 376 STLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQ-ADQVVLTSDNPRSEDPQAIID 434 Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 +I G+ + +R AI AI K DV+++AGKGHE+ + G+K +D D Sbjct: 435 QIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIA-GKKLPFLDADH 493 Query: 489 IREIL 493 + L Sbjct: 494 VALAL 498 >gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] Length = 507 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 151/502 (30%), Positives = 230/502 (45%), Gaps = 23/502 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ + E + + + I+ V S ++ G +F + G K DGH F Sbjct: 1 MYLNDLLAR-LHEDPSSPKLLSPRGDNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFA 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ +GA A+ V A L + R+F+ A+ LYG+ + + Sbjct: 60 ASALDRGAVALCVERALDLPVPQVVVPDV---------RRFMGRLAAVLYGEPAQRLTHV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GKS+ ++ + Q +G+ + +G + TTP + L+ + Sbjct: 111 GITGTNGKSTTTYMLRSVLQSAGVKTGLLGTIVYHDGDKELEADRTTPENTDIQSFLARM 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S G +E SSHGL+Q R++G + G FTNL +H+DYH T++AYF AK LFEE Sbjct: 171 VSNGCGACVMETSSHGLEQGRIEGCRFDRGGFTNLSPEHLDYHGTEEAYFQAKKLLFEEY 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + DDAY + +++ G LK +T+ Sbjct: 231 MKPSWKGASNRDDAYGRRLLEAYPENLVGYTREEPRPGDLGATLKSFDLTGMCLDLTLPD 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + PL G + V NAL A L + ID + L + VPGR E + G Sbjct: 291 GRVLPEVHLPLIGTYNVENALACAALARTLDIDGETIRRGLASMPQVPGRLERY-SLPGG 349 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT + LE +L +R + G++ VFG GG+R R +G+ A LAD +V Sbjct: 350 VTCVIDYAHTPDGLEKVLSTLRHVCRGQLWSVFGHGGERTTSHRKALGEHAGRLADRVVV 409 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPRSEDP I +I+ GI G + +R EAIR A++ DV++V+GKG Sbjct: 410 TMDNPRSEDPGAIAEQIVGGIQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSGKGP 469 Query: 470 ETVHIVTNGEKKMSVDCDIIRE 491 E I + D ++ E Sbjct: 470 ERNIIFAD-RLVPFEDRAVVLE 490 >gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] Length = 454 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 227/464 (48%), Gaps = 26/464 (5%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR ++ G F+AI DGH +I QAIA GA I+ + ++ Sbjct: 7 TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEHGNYSVET----------VI 56 Query: 95 VDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 V+NTRK+L+ + + ++ VTGT+GK++ + Q+ +G Sbjct: 57 VENTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGF 116 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + ++ TTP L L + GV + +E SSH L + R+ G++ +FTN Sbjct: 117 YYGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVAFTN 176 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH+T + Y NAK +LFE+ + I D + +++ +N Sbjct: 177 LTQDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDDIHHQHFMLEGNNNIVI------ 230 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + ++ V H + + + G + +YN L A L +G Sbjct: 231 --DRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKIED 288 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L EKL GR E + N+ I+VDYAHT +++E +LK+ + G+II + GCG Sbjct: 289 ILLLNEKLKAPAGRMELIKYNTNS--IFVDYAHTPDAVENVLKSAQEFKKGKIITIIGCG 346 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449 G+RD KRPIMGKIA+D +D I T DNPR E+PE I +I + F R +AI Sbjct: 347 GNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFEIIVERQDAI 406 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ML++ D+L++ GKGHE +G++ D + + + + Sbjct: 407 YKGVKMLDENDILMILGKGHENYQETKDGKR-HFSDQEEVLKCI 449 >gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum GMI1000] gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum GMI1000] Length = 514 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 161/507 (31%), Positives = 229/507 (45%), Gaps = 31/507 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62 I +++ L + ++SD+R ++ G +FVA V GN + DG IPQ Sbjct: 12 IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119 AI G A++ + + A R IL VD + A++ Y ++ Sbjct: 67 AIEAGVSAVLAEAHGYVVPADAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S + ++ Q R G +G T TTP I L +L+ L Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237 G V++E SSHGL+Q R DG + FTNL +DH+DYH T Y AK RLF Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242 Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + ++ A + + + G ++ V A Sbjct: 243 LRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFD 302 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P+ G F V N L G+ + G+ L LEKL V GR E G Sbjct: 303 VDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG-G 361 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G + VDYAHT ++LE L+ + I G++ VFGCGGDRD GKRP MG IA L Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITGARGGKLWAVFGCGGDRDPGKRPQMGAIAERL 421 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A ++T DNPRSEDP+ I I G+ I+ +R AI A+ + DV+VVAG Sbjct: 422 AQHVVLTSDNPRSEDPQLILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAG 481 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE+ + G K+ D + +R L Sbjct: 482 KGHESTQEIA-GRKRPFSDQEHVRLAL 507 >gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] Length = 498 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 146/493 (29%), Positives = 211/493 (42%), Gaps = 23/493 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ + + + + DSR ++ G FVAI G G F+ Sbjct: 1 MLLSQLLPD-----------VALVGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA A GA AI+ + + + V R + A + +G + + Sbjct: 50 EQARAAGASAILFEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRAMAMV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S + Q G S IG + TTP + + L+ L Sbjct: 105 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V++E SSH LDQ R+D + FTNL RDH+DYH +Y AK RLF Sbjct: 165 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K + + A + S G + + + + ++G Sbjct: 225 GLKAAVVNLDDAFGRQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDG 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F V N L AG A G + E L L + GR +G Sbjct: 285 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPT 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L+ L ++ G + VFGCGG+RD GKRP M IA LA+ IVTD Sbjct: 345 VVVDYAHTPDALKQALDSLHGHLHGALFCVFGCGGERDTGKRPQMAAIAERLANQVIVTD 404 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR ED + I A+I+ G + +R AI A++ D++++AGKGHE Sbjct: 405 DNPRGEDGDVIVADILAGFQNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQE 464 Query: 475 VTNGEKKMSVDCD 487 V NG + D + Sbjct: 465 V-NGVRHDFDDTE 476 >gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] Length = 521 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL E P + ++ DSR ++ G I+ A+ G + G F Q Sbjct: 17 LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 71 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A + GA A + A + + + P+LVV + R + A+R+YG ++ + + Sbjct: 72 AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 127 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK++ A ++ + +G S+ IG I + TTP L + + Sbjct: 128 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 187 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GV V++E SSH L R+DG+ F NL +H+++H + YF AK +LF Sbjct: 188 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 247 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 + DD Y + ++ A + G+ + V T+ Sbjct: 248 RRGVVNH--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGS 305 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PLPG F V N L A G D + E + + VPGR E V + Sbjct: 306 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 364 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T D Sbjct: 365 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 424 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSEDP I A ++ G E+G+ AI + D +++AGKGHE Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 V NG + D ++++E + Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAIR 507 >gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 154/512 (30%), Positives = 236/512 (46%), Gaps = 38/512 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF- 59 M+L+ L+ +R + ++ DSR I+ G++FVA+ G++ G + Sbjct: 2 MRLRTLLQPWL---------DLTDADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYL 52 Query: 60 ------------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 A A + +A R+ P++ V + + L A+ Sbjct: 53 GDALAAGAGAVLWEPA---------GDVAPEPDERTAAERAGVPLIAVPDLGRRLGPIAA 103 Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTT 164 RLYG + + VTGT GK+SV ++ Q+ R +G + Q TT Sbjct: 104 RLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDREAHRCGLVGTLGSGFPDSLQPGTHTT 163 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 P + + L+ L QG V++E SSH LDQHR+ G++ TNLGRDH+DYH Sbjct: 164 PDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRVAGVRFHTAVLTNLGRDHLDYHGDLA 223 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 Y AK RLF + + + G+ + + + Sbjct: 224 GYAEAKSRLFGVPGLQWAVLNLDDAFGRQVHGALAGGTRALGYSLAGHPQAGVRGEGLVL 283 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 ++ +S E + PL G F N L A +++G+ +++E L L VPG Sbjct: 284 EPQGLRLRLSTEWGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPG 343 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E R + VDYAHT +L L +R G + +VFGCGGDRD+GKRP+MG+ Sbjct: 344 RMEPFTRPGRPS-VIVDYAHTPAALRGALAAVRAHYRGAVWLVFGCGGDRDRGKRPLMGE 402 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVL 462 A +LAD ++TDDNPR EDP++I +I G P + +R AIR A+E +DV+ Sbjct: 403 AAAELADRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGPEDVV 462 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +VAGKGHETV + + D + + + LG Sbjct: 463 LVAGKGHETVQQIGD-RCLPFSDREAVVQALG 493 >gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CMR15] Length = 514 Score = 279 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 160/507 (31%), Positives = 231/507 (45%), Gaps = 31/507 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62 I +++ L + ++SD+R ++ G +FVA V GN + DG IPQ Sbjct: 12 IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119 AI G A++ + + +A R IL VD + A++ Y ++ Sbjct: 67 AIEAGVSAVLAEAHGYVVPANAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S + ++ Q R G +G T TTP I L +L+ L Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237 G +++E SSHGL+Q R DG + FTNL +DH+DYH T Y AK RLF Sbjct: 183 RAGARAIAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242 Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + ++ A + + + G ++ V A Sbjct: 243 LRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFD 302 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P+ G F V N L G+ + G+ L LEKL V GR E G Sbjct: 303 VDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG-G 361 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G + VDYAHT ++LE L+ + IT G++ VFGCGGDRD GKRP MG IA L Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERL 421 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A ++T DNPRSEDP+ I I G+ ++ +R AI A+ + DV+VVAG Sbjct: 422 AQHVVLTSDNPRSEDPQLILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAG 481 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE+ + G K+ D + +R L Sbjct: 482 KGHESTQEIA-GRKRPFSDQEHVRLAL 507 >gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] Length = 499 Score = 279 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 142/493 (28%), Positives = 236/493 (47%), Gaps = 34/493 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAI----VGNKEDGHLFIPQAIAQGAEAIVVS 74 ++W + + DSR +QAG IF+A+ +K +F A++QGA I+ Sbjct: 11 GNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKT--RIFAENALSQGALGIISE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVA 130 S + T V R+++ + + + ILAVTGT+GK++++ Sbjct: 69 SDLGV----------TTAWVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGKTTIS 118 Query: 131 SFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + ++ +G T + TT + L AL SSQG V++EA Sbjct: 119 RLIAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL+G ++ ++NL RDH+DYH T AY +AK LF+ + A+I D Sbjct: 179 SSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFKFATLRS--AVINLD 236 Query: 250 DAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D Y+ +++ A R S+ + + + + + ++ P Sbjct: 237 DDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEYVVQSP 296 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+F + N + + G + +L + +L PGR + + R VDYAHT Sbjct: 297 LLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDAER--LFVVDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ ++ +FGCGGDRD+GKRP+M + AL+ AD I+T DNPR+E P Sbjct: 355 PDALTQVLVTLKRHVQHQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESP 414 Query: 426 EKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E+I ++ H G E +R EAI+ A++ D++V+AGKGHE + +G + Sbjct: 415 EQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRH 473 Query: 482 MSVDCDIIREILG 494 D ++ L Sbjct: 474 WFDDVVEVQSALE 486 >gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia K279a] gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Stenotrophomonas maltophilia K279a] Length = 502 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 146/494 (29%), Positives = 212/494 (42%), Gaps = 23/494 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ + + + + DSR ++ G FVAI G G F+ Sbjct: 5 MLLSQLLPD-----------VALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA A GA I+ + + + V R + A + +G ++ + Sbjct: 54 EQARAAGASVILFEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRSMAMV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S + Q G S IG + TTP + + L+ L Sbjct: 109 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V++E SSH LDQ R+D + FTNL RDH+DYH +Y AK RLF Sbjct: 169 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K + + A + S G + + + + ++G Sbjct: 229 GLKAAVINLDDAFGGQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDG 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F V N L AG A G + E L L + GR +G Sbjct: 289 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPT 348 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L ++ G + VFGCGG+RD GKRP M IA LA+ IVTD Sbjct: 349 VVVDYAHTPDALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMATIAERLANKVIVTD 408 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR ED + I A+I+ G + +R AI A++ D++++AGKGHE Sbjct: 409 DNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQE 468 Query: 475 VTNGEKKMSVDCDI 488 V NG + D ++ Sbjct: 469 V-NGVRHDFDDTEV 481 >gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] Length = 496 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 224/469 (47%), Gaps = 14/469 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + + +FVA+ G +G ++ +G VV Y + A+ ++ I Sbjct: 27 VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVV-PTYVAKGLIASNSTDLNI 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + D+ LS + G P +++ VTGT+GKSSV+ ++ Q+ GLS IG Sbjct: 86 IGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGV 145 Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ + TTP + + K L+ + GV V+ EASSH LDQ R+ GI++ FTN Sbjct: 146 GKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGIEIDTAVFTN 205 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH T ++Y A + L A+ + Y + + + G + Sbjct: 206 LTQDHLDYHGTMESY--ATAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSK--GDKSYYGE 261 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++ V + + + PL GEF V NA+ A + D Sbjct: 262 RPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVELPLMGEFNVDNAVAALASLWPLFDDKVA 321 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFG 389 ++ L L PGR E V + V DYAHT ++L + LK + + G I VFG Sbjct: 322 LISSLTSLKGAPGRMERVTLSEGANVPVVLVDYAHTPDALSVALKALAVHSKGPITCVFG 381 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGN 444 CGGDRD+GKRP M + ALDLAD ++T DNPRSE P +I + + G+ I + Sbjct: 382 CGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSEIPSEIMQDALSGVAECERQRVILDED 441 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R AI AI + ++++VAGKGHET + G K D + L Sbjct: 442 RRSAIEFAIATASINEIVLVAGKGHETYQEIG-GVKSHFDDREEALNAL 489 >gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium diphtheriae NCTC 13129] gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium diphtheriae] Length = 513 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 159/497 (31%), Positives = 238/497 (47%), Gaps = 19/497 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL + +I+ + DS + A IF A+ G K G + Q A A A Sbjct: 14 LTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAAAALA 73 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 ++ + + PI+ VD+ R+ L + ++ +YG + + VTGTSGK++ Sbjct: 74 VLSDHEGTQILVDSG--EKRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + +++ +GL IG T T + +LTTP L + S + ++GV+HV + Sbjct: 132 TSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHVVM 191 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAII 246 E SSH L R+ G + A FTNL +DH+D+H T Q YF AK F+ P +++ Sbjct: 192 EVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKSVV 251 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDF 302 +D + K + +RA V + V I Q + + D Sbjct: 252 CVNDLWGKNMAERAGADAITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQSTDV 311 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG F + N +VA L ++G+D+ + + + V PGR E + VDY Sbjct: 312 HLPLPGGFNIANTVVALALAESVGVDTDAFIRGIADVAV-PGRMERIDRGQE-FLAVVDY 369 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH ++ +++ +R GRI VV G GGDRD GKRPIMG A AD+ IVTDDNPRS Sbjct: 370 AHKPAAVAVVIDTVRDQVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTDDNPRS 429 Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP KIR ++ G E G+R EAIR A++ D ++VAGKGHE ++ Sbjct: 430 EDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEVGQLI- 488 Query: 477 NGEKKMSVDCDIIREIL 493 NG D + + L Sbjct: 489 NGVDHHFDDREEVAAAL 505 >gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] Length = 492 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 183/503 (36%), Positives = 263/503 (52%), Gaps = 23/503 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L I E + + D+R + G +F A G + +G FI Sbjct: 1 MKLSKL--------CVGAGIDCPSGAEINVTGFAIDNRKVAPGTVFGAFQGAQVNGEDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A + + A ++ +A + D RK + A+ + PE+I+AV Sbjct: 53 P--------AAIEAGAVAVVARAAAKVEGALHIASDIPRKCFAELAAGFFTPAPEHIVAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +QI + SG + IG T + LTTP + +S L+ Sbjct: 105 TGTNGKTSCVEMTRQIWRMSGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTHV+ EASSHGL Q+R +G+ + A FTN RDH+DYH + YF AKMRLF+E++ Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGVAVEAAGFTNFSRDHLDYHADMEDYFAAKMRLFDEVVS 224 Query: 240 KESPAIIYA---DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + A+I+ + ++ V+ A G V++VG QG+ I L Q +T+ Sbjct: 225 DGATAVIWMGAGESGWNARVVDHAKQRGLTVMTVGEQGEDIRLTHREPTQLGQSLTVEHA 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G + PL G +QV NALV+ GL +A GID++ V + + +L V GR E G Sbjct: 285 GTERTINLPLIGAYQVSNALVSGGLALATGIDASRVWDAVARLQPVRGRLERAVIAPSGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +Y+DYAHT ++LE + +R +GR+I VFG GGDRD GKR MG+ A +D+ IVT Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVTGRLITVFGAGGDRDHGKRAPMGEAAAKASDLVIVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPR EDP IR ++ G E R EAI AI K D++++AGKGHET I+ Sbjct: 405 DDNPRGEDPADIRRAVLEGAGEAREVAGRREAIHAAIAEAGKDDIVLIAGKGHETGQIIG 464 Query: 477 NGE---KKMSVDCDIIREILGLI 496 +GE D ++ RE LI Sbjct: 465 SGENMRVHPFDDVEVARECAALI 487 >gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster bacterium] Length = 495 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 148/491 (30%), Positives = 232/491 (47%), Gaps = 31/491 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +Y + + L+ + +IN + ++ + Q G +F+A+ G G I +AI + Sbjct: 29 LYNERMNITQLLADITPTKIDLEINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEK 88 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSG 125 G A++V S + P++ ++N +++L AS Y + + ++ VTGT+G Sbjct: 89 GCVAVLVDSH--------DLECAIPVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNG 140 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV F+ Q+ G+ + IG +S TTP L KAL + Sbjct: 141 KTSVGYFISQMLSELGIKNGFIGTLGISNSDVASA-NTTPDIFTLYKALHQYHLDNINTA 199 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSHGLDQ+R+ G+ FTNL +DH+DYHQT Y K++LF I Sbjct: 200 VLEVSSHGLDQNRVAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFSF--DSIQSVI 257 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I DDAY ++ + + S+ K + + +F F P Sbjct: 258 INQDDAYHQDFLDASKGKKQTTYSIKDFEKIT----------INEQGFLCQLDNFVFEIP 307 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+F + N L A +G ++ L +L GR + + +VDYAHT Sbjct: 308 LLGKFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKIKKAL----AWVDYAHT 363 Query: 366 SNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++L + ++ I +VFGCGG+RD+ KR MGKIA LAD ++T+DNPR ED Sbjct: 364 PDALANAITTLKEHHPEHKIRIVFGCGGNRDKSKRAKMGKIASKLADTIVLTNDNPRKED 423 Query: 425 PEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I +I+ GI E +R AI TAI LN+ + L++AGKGHE+ N Sbjct: 424 PQAIINDILSGIDDSFELDITLDRQLAIETAITTLNEGECLLIAGKGHESTQEFKNKTTA 483 Query: 482 MSVDCDIIREI 492 D +I + Sbjct: 484 -FNDVEIAQNA 493 >gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate ligase mure [Rhodococcus equi 103S] gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 547 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 25/513 (4%) Query: 7 IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + +L + ++ V ++ ++ G +F A+ G G F+ AIA Sbjct: 28 LTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEFVGVAIA 87 Query: 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 GA A++ A + ++ P+LV + R+ L ++ +YG E++ + +T Sbjct: 88 AGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGIT 147 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GTSGK++ + V+ +G + +G T + + LTTP L + + + Sbjct: 148 GTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRER 207 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ V +E SSH L R+DG++ G+FTNL +DH+D+H+ YFNAK RLF Sbjct: 208 GIDTVVMEVSSHALALGRVDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAV 267 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHNKQQVT 292 + + D M + N+ Sbjct: 268 CAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTL 327 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +G LPG + V NA +AA +C + G D L + + V PGR E V Sbjct: 328 TGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDV-PGRVERV-ER 385 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAH +LE ++ +R T GRI VV G GGDRD+GKRP+MG+ AD+ Sbjct: 386 GQDFLAVVDYAHKPAALEAVIATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADL 445 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +VTDDNPR+EDP IRA+++ G E G+R EAI A+ DV++V Sbjct: 446 LVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGAVREIGDRAEAIAAAVRWARTGDVVLV 505 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 AGKGHE+ V +G K D +++ + I+ Sbjct: 506 AGKGHESGQEV-HGVKHPFDDREVLAAAIARIV 537 >gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] Length = 485 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 194/481 (40%), Positives = 267/481 (55%), Gaps = 11/481 (2%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + ++++++DSR + G +FVA+ G K DG F Q A Sbjct: 5 LADLFPEAAGPAADLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAAQ-----AAQRGA 59 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ A + + V + R+ L+L A+RL G PE ++AVTGT+GKSSVA FV Sbjct: 60 AAVAGEGTRPADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI R G + +G AQ LTTP P+ L + L+ L+++GVT +++EASSH Sbjct: 120 RQILARLGRDAASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAEGVTDLAMEASSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G++Q RLDG++L A FTNLGRDH+DYH + + Y AK+RLF +LLP PAI+ AD AY Sbjct: 180 GIEQRRLDGVRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAY 239 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGE 309 ++ V+ A AG V +VG G+ + ++ V Q + G+ D P Sbjct: 240 AERVIAAAEAAGRPVRTVGRGGRDLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQV 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 A A A D V L+ L VPGR E +G G VDYAH +L Sbjct: 300 ENALVAAGLALATPAGAADPDGVFAALDHLTGVPGRMERIGEARGGLC-LVDYAHKPEAL 358 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L +R +GR++ VFGCGGDRD+GKRP+MG IA LAD+ IVTDDNPR+ED IR Sbjct: 359 ESVLTALRPFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLADVVIVTDDNPRTEDAAAIR 418 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 I+ PG E G+R EAI +A+ L DVLVVAGKGHET IV + D ++ Sbjct: 419 RAILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKGHETGQIVGD-RTLPFSDHAVL 477 Query: 490 R 490 R Sbjct: 478 R 478 >gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actG] Length = 521 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL E P + ++ DSR ++ G I+ A+ G + G F Q Sbjct: 17 LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 71 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A + GA A + A + + + P+LVV + R + A+R+YG ++ + + Sbjct: 72 AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 127 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK++ A ++ + +G S+ IG I + TTP L + + Sbjct: 128 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 187 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GV V++E SSH L R+DG+ F NL +H+++H + YF AK +LF Sbjct: 188 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 247 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 + DD Y + ++ A + G+ + V T+ Sbjct: 248 RRGVVNY--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGS 305 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PLPG F V N L A G D + E + + VPGR E V + Sbjct: 306 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 364 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T D Sbjct: 365 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 424 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSEDP I A ++ G E+G+ AI + D +++AGKGHE Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 V NG + D ++++E + Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAIR 507 >gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] Length = 513 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 147/506 (29%), Positives = 228/506 (45%), Gaps = 30/506 (5%) Query: 6 LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + F +LI L + + +V DSR + G +FVA+ G DGH F+ A Sbjct: 1 MTQSRFSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADAR 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 A+GA A +V S + + + V NTR L L A+ +G+ E I+ +TG Sbjct: 61 ARGAVAALVES------WEPDLANYPAYAAVPNTRAALPLVAATFFGRPAEALGIIGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS 179 T GK++ + V + + +G + IG + D R TTP + + + L+ + Sbjct: 115 TDGKTTTSYLVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMRE 174 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--- 236 V +EA+SHGL HRLD G TN+ +H+++H T + Y AK RL E Sbjct: 175 ARVDWAVLEATSHGLALHRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAG 234 Query: 237 --LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 P ++ DD ++ + + A A S + V + ++ Sbjct: 235 RGPRPYPGGVVLNRDDEGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLT 294 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 L G + V NAL AAG+ +G+ + LE L VPGR V Sbjct: 295 TPRGSVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDLGQ- 353 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT +SLE L+ +R++ GR+I VFG G+RD+ KRP+ G ++ LAD ++ Sbjct: 354 PYTVIVDYAHTPDSLEKSLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFSV 413 Query: 415 VTDDNPRSEDPE--------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 T ++PR EDP+ R ++ +R AIR A++ D +++AG Sbjct: 414 FTSEDPRFEDPDAIIAEIAAGARDAGAVEGRDYVCIEDRRAAIRAALDWARPGDGVLLAG 473 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KGHE I + D RE Sbjct: 474 KGHERCIIYGAERRPW----DEAREA 495 >gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actF] Length = 526 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL E P + ++ DSR ++ G I+ A+ G + G F Q Sbjct: 22 LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 76 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A + GA A + A + + + P+LVV + R + A+R+YG ++ + + Sbjct: 77 AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 132 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK++ A ++ + +G S+ IG I + TTP L + + Sbjct: 133 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 192 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GV V++E SSH L R+DG+ F NL +H+++H + YF AK +LF Sbjct: 193 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 252 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 + DD Y + ++ A + G+ + V T+ Sbjct: 253 RRGVVNY--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGS 310 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PLPG F V N L A G D + E + + VPGR E V + Sbjct: 311 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 369 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T D Sbjct: 370 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 429 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSEDP I A ++ G E+G+ AI + D +++AGKGHE Sbjct: 430 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 489 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 V NG + D ++++E + Sbjct: 490 QGQDV-NGVVRPFDDREVLKEAIR 512 >gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] Length = 503 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 233/470 (49%), Gaps = 18/470 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR + G +F+A+ G DG FI QA+ G A++ + + ++ + Sbjct: 34 LHLDSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLAHAE-----PGGSASADARV 88 Query: 93 LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + ++ L L+ ++ VTGT+GKSSV ++ + + G + +G Sbjct: 89 IHLEGLAGQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLG 148 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ RLTTP P+ L AL L+++GV V++EASSH L+Q RL G +L FT Sbjct: 149 HGRPGALREGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFT 208 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+DYH + AY AK RLF P+ A++ DD ++ ++ + Sbjct: 209 NLSRDHLDYHGSMAAYAAAKARLFRR--PELRLAVVNGDDPLARLMLAGLPAGVRVLAVG 266 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + V + Q+ I+ + L G F + N L+A +G D Sbjct: 267 DDEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLE 326 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVF 388 + +L VPGR + +G G + +DYAHT ++LE L+ +R GR+ +F Sbjct: 327 ALFAAAAELAPVPGRMQVLGDAR-GPTVVIDYAHTPDALENALQALRAHLPDQGRLWCLF 385 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKG 443 GCGGDRD GKRP+M A +D+ ++TDDNPRSE IR +I+ G+ G Sbjct: 386 GCGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARVLG 445 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R AIR I ++ +DV+++AGKGHET + G + D D + L Sbjct: 446 GRAAAIRETIAEVDAEDVILIAGKGHETYQEIE-GVRHPFSDLDEAQAAL 494 >gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] Length = 515 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 159/508 (31%), Positives = 240/508 (47%), Gaps = 26/508 (5%) Query: 2 KLQDL-IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 KL++L I F ELI+ I + DSR++ G +F+AI G+K DG L+I Sbjct: 15 KLRELVIPWVFNELISSA---------LVITALQLDSRNVTVGNLFIAIKGHKTDGRLYI 65 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHPEN 116 AI GA A+++ S + + I +N PI+ + +S A R YG N Sbjct: 66 KHAIKNGAVAVLLESTNNDNFLAQNIVNNVSSCVPIINFYKLNQAVSSIAGRFYGHPSRN 125 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKA 173 + + VTGT+GK++++ + + G S +G + TT S I + Sbjct: 126 LNLIGVTGTNGKTTISHLLANWVELLGEKSAVMGTIGYGMIGSMCVSNCTTFSAIDTQRI 185 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ G+ V++E SSHGLDQ+R+D + F+NL DH+DYH Y AK RL Sbjct: 186 LNQFIQSGIKFVAMEVSSHGLDQYRVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKWRL 245 Query: 234 FEELLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F EL + Y + + L ++G++I L K V Sbjct: 246 FSELCVTNYVINVDDYIGYEWLSYLPNSVAVTIQDNLPKFWKGEWIKLVKANYFVYGTDV 305 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + L GE V N L+A G + +G ++L ++L + GR E Sbjct: 306 FFHSSWGNGIIRSQLLGECNVSNLLLALGALLVLGYPLMVLLSIADQLKPICGRLEKFK- 364 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I VDYAHT ++LE IL+ + + G++ VFGCGG+RD+ KR MG +A Sbjct: 365 SFNKPTIIVDYAHTPDALEKILRFLGAQLCKKGKLWCVFGCGGNRDKLKRSRMGIVAERY 424 Query: 410 ADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +D ++TDDNPR+E+ + I NR++AI TAI + D +++AG Sbjct: 425 SDYVVITDDNPRTENSQSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILIAG 484 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHE+ IV N K D DI+R IL Sbjct: 485 KGHESYQIVGNDYLKY-SDQDIVRNILE 511 >gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 494 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 162/477 (33%), Positives = 241/477 (50%), Gaps = 19/477 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNK------EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +DSR + G +FVA+ G DG FI +A A GA A+V ++ A Sbjct: 20 IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVC-LPARVEAALADA 78 Query: 87 RSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + D+ R + L A P ++AVTGT+GK+++ + + G + Sbjct: 79 PEGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSALGRRA 138 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S FA D LTTP I L + GV +E SSH LDQ R+ GI+ Sbjct: 139 GVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRRVAGIR 198 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TNL +DH+DYH + Y+ AK RLF EL + + ADDA+ + ++ +A Sbjct: 199 FAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLGEVPHA 258 Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 L G +F+H + V + + ++ EG+ ++ L G N L Sbjct: 259 IGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNLLAVQA 318 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +C+ +G+ L VPGR E + N RG I+VDYAHT ++LE +L+ +R + Sbjct: 319 VCLGMGLAPQDFA-SLAGFTGVPGRLERI-VNPRGLDIFVDYAHTPDALENVLRALRAVG 376 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIP 437 RI+ VFGCGG+RD+ KRP+MG+ AD+A++T DNPR EDPE I A++ + G Sbjct: 377 FSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPGLAGAR 436 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI A+ +L DVL+VAGKGHE+ + + K D +IREILG Sbjct: 437 KVVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQIGD-RKVPYSDQQVIREILG 492 >gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] Length = 501 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 205/470 (43%), Gaps = 21/470 (4%) Query: 29 KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + +DSR + G F+A G DG ++ A+A GA A +V LQ F Sbjct: 18 RVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVE----LQGFEPRGP 73 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + + A+ + + + + AVTGT+GK+S ++ Q R G Sbjct: 74 DDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCG 133 Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + LTTP P+ L + + +G ++EASS GL + RLD + Sbjct: 134 VVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASSIGLVERRLDATTI 193 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN +DH+DYH + Q Y+ AK LF A + D + + Sbjct: 194 QVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSW---PGLKAAVINVDDGKGLELSASLAGS 250 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + H + + L G++ VYN L Sbjct: 251 DLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAAL 310 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+GI + L VPGR + + + +DYAHT ++LE +L ++ + Sbjct: 311 RAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPL-VVIDYAHTPDALEKVLTALQPVARS 369 Query: 383 R---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436 R + VFGCGGDRD GKRP+M +A AD +VT DNPRSE+P I +++ G+ Sbjct: 370 RGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRSENPLAIIDQVLRGLNHR 429 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 + +R AI A+ + DV+++AGKGHE+ V G K D Sbjct: 430 DAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQ-GVKLPFSDR 478 >gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 494 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 139/503 (27%), Positives = 230/503 (45%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L K + + + +R+I ++++DSR + G +FVA G D H F Sbjct: 1 MKANELFEKIKSKQV-------LGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFC 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + QG + IVV S ++ + ++V TR+ SL +LY E Sbjct: 54 QDVVNQGCKLIVVESEQEVEG-------DVTQVIVPKTRRVASLIVHKLYNYPSEQLTTY 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+A+ + QI ++ G S +G + TTP + L K + Sbjct: 107 GVTGTNGKTSIATMIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEA 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 G +++E SSHGL RL G++ F+NL +DH+D+H T +AY +AK Sbjct: 167 VEAGAESMTLEVSSHGLALGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQL 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E L KE A++ ADD +S+ + + +++ Sbjct: 227 GEDLRKEKFAVVNADDDFSEYLTSVTPYEVFTYGIH--RPAQFKAERIQESLTGASFDFV 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 F P G+F + N + A G +++ + +L V GR E + + Sbjct: 285 TPDGTFHVDSPYVGKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEGRLEVLDPS-L 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT++ +E ++ ++ ++I + G G+RD K P MGK A AD I Sbjct: 344 PIDLIIDYAHTTDGIEKLIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGKQASR-ADYVI 402 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNP ++DP+ + AE+ G ++E +R E IR AI++ D +V+A KG E Sbjct: 403 FTPDNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVLASKGREPY 462 Query: 473 HIVTNGEKKMSVDCDIIREILGL 495 I+ K D +++GL Sbjct: 463 QIMPGHVKVPHRD-----DLIGL 480 >gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 460 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 150/479 (31%), Positives = 226/479 (47%), Gaps = 36/479 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + F L+ I + +++ V DSR I+ G +F+ I G DGH F Sbjct: 1 MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 +A+ GA A+VV + N P ++V TR ++LFA+ YG H I+ Sbjct: 54 GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++QI + G + +G I S TT + + K L+ + Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + +E SSH LD R+ GI +G FTNL +DH+DYH+T Y AK +LF + Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224 Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 AI+ DD S+ + + + Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRLTSAEVITYGIEKECDV--RASNIRITAEGTE 282 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T++ + L G+F VYNAL A +A GI + + L ++ VPGR E V Sbjct: 283 FTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV- 341 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + + VDYAHT + LE L ++ G + VFGCGGDRD+ KRP+MGK+ + Sbjct: 342 SEGQDYLVLVDYAHTPDGLENTLSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462 D VT DNPR+EDP I +I+ GI F +R AI+ AIE+ + +DV+ Sbjct: 402 DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460 >gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] Length = 459 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 136/464 (29%), Positives = 220/464 (47%), Gaps = 25/464 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ DSR + G++F AI G K D + F+P +A+ +VVS + Sbjct: 14 DMVYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSENGF---------DDER 64 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + VD+ RK + L A + HP L V G +G + + + S Sbjct: 65 CIKVDDVRKCMGLAADHFF-NHPSKKLKVVGITGTNGKTTTTYLLRSIFDNSEIIGTTGW 123 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T+ TTP + L + L+ ++ + E SSH L +R++G+ FTN Sbjct: 124 TLKDERFKLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTN 183 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + +DH+D++ + Y K+ FE L PK A D ++ A Sbjct: 184 ISQDHLDFYDNLENYAKTKLSFFERLKPKVVNA-----DDSYGRMLIDAATISYGFSDFA 238 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + ++ + + ++V + PL G++ +YN + A G+ + G+D A Sbjct: 239 FIKPIVY----EYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFAR 294 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + E + K PGR EF + G VDYAHT +++ +L+ + I GRII VFG G Sbjct: 295 IEEGIAKSKGAPGRLEFFQKD--GAYAVVDYAHTDDAMRNVLEALNKIKKGRIITVFGAG 352 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEA 448 GDRD+ KRP MG IA L+D+ +VT DNPRSE+P I +I+ GI I + +R EA Sbjct: 353 GDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPDRFEA 412 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I+ A+ M K D++ + GKGHE I+ + + D +++R + Sbjct: 413 IKKALGMAEKGDLVTILGKGHEDYQILKD-KTIHFDDREVVRRL 455 >gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] Length = 544 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 152/501 (30%), Positives = 239/501 (47%), Gaps = 26/501 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + Q E + V D R I A +F A+ G + G F A+ +GA AI+ Sbjct: 37 LEWVGQPGSQSSEVVVKGV--DLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAIL 94 Query: 73 VSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 A +A + P+LV N R L ++ +YG+ E + + +TGTSGK++ Sbjct: 95 TDEAGLELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTT 154 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ +G +G T + LTTP L + ++ QG+ V + Sbjct: 155 TSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVM 214 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246 E SSH L R+DGI+ G+FTNL +DH+D+H+ + YF AK RLF+ + A++ Sbjct: 215 EVSSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVV 274 Query: 247 YADDAYSKEVMK-----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 DD + + + + + S + +V ++ + +G+ + Sbjct: 275 CVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWP 334 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 LPG + V NA +A + A G+D + L + V PGR + + VD Sbjct: 335 VSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDV-PGRVQRIDRGQS-FLAVVD 392 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH +LE ++ +R GR+ VV G GGDRD GKR +MG+ AD+ IVTDDNPR Sbjct: 393 YAHKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRTLMGEAGARGADLLIVTDDNPR 452 Query: 422 SEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +EDP KIRA ++ G E G+R AI A+ DV++VAGKGHE Sbjct: 453 TEDPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRWAQPGDVVLVAGKGHEVGQ 512 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + +G K D +++ E++G Sbjct: 513 EI-DGVKHPFDDREVLGEMIG 532 >gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Herminiimonas arsenicoxydans] gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Herminiimonas arsenicoxydans] Length = 508 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 230/482 (47%), Gaps = 32/482 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I G +F+A G++ DG +I AI +GA+AI+ +A D N P L + Sbjct: 28 DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEW----NVPHLAI 83 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 DN R A+ YG + +AVTGT+GK+S + ++ R G + IG Sbjct: 84 DNLRACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVG 143 Query: 154 SSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP + L + L + G T +++EASS GL Q RL G+ Sbjct: 144 IFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMA 203 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN RDH+DYH AY AK LF+ + A++ DDA +++R + Sbjct: 204 LFTNFTRDHLDYHGDMAAYEAAKTMLFDWPGLRH--AVVNLDDALGVRLVERLKRRQSGI 261 Query: 268 LSVGYQGKFI--------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 GY + + H ++ + L GEF V N L Sbjct: 262 GITGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGII 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ +A GI + V+ +E L VPGR + +G + +DYAHT ++LE L +R + Sbjct: 322 GILLAKGIALSNVVAAIEALTSVPGRMQQLGGAEAPL-VVIDYAHTPDALEKTLATLREV 380 Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + R + VFGCGGDRD GKRP MGK A+ AD IVT DNPR E+P I A+I+ G+ Sbjct: 381 ANERGGALWCVFGCGGDRDAGKRPQMGKAAMA-ADHIIVTSDNPRHEEPASIIAQIVAGM 439 Query: 437 PGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R +AI A KQDV+++AGKGHE + G K+ +D D Sbjct: 440 DVAKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKGHEAYQEIK-GRKQPFLDADHAALA 498 Query: 493 LG 494 L Sbjct: 499 LS 500 >gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae TN] gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae Br4923] gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase [Mycobacterium leprae] gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae] gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae Br4923] Length = 530 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 141/504 (27%), Positives = 218/504 (43%), Gaps = 17/504 (3%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +L+ + L + + + V+ ++ + +G +F A+ G G + Sbjct: 20 RLPELVAQVGAVLADGPGQ-AATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAG 78 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 A+ +GA A++ A + S+ PIL+ R L A+ YG + + Sbjct: 79 VALERGAVAVLTDVAGVAE--LTAQASSVPILIHPEPRSVLGGLAAAAYGHPSNRMTVVG 136 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLS 178 +TGTSGK++ V+ + G +G A LTTP L L+ + Sbjct: 137 ITGTSGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMV 196 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GV V +E SSH L R++G + FTNL RDH+D+H + YF AK LF+ Sbjct: 197 ERGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHS 256 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + V ++G + Q+ T Sbjct: 257 LLRARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRSPGVGAQEFTAVDPAG 316 Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + LPG + V N LVA + +G+ + + PGR E + Sbjct: 317 VQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRI-PGRLERIDCGQ-DFL 374 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH +L +L + R+ VVFG GG+RD GKR MG+IA +LAD+ +VTD Sbjct: 375 ALVDYAHKPGALHSVLTALLQ-PDHRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTD 433 Query: 418 DNPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR EDP IR +I+ G +E G+R AI+ A+ DV++VAGKGHET Sbjct: 434 DNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHET 493 Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495 E D + L + Sbjct: 494 GQ-RGAAETCPFDDRVELARALQV 516 >gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques L2-14] Length = 488 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 141/502 (28%), Positives = 233/502 (46%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + ++ ++ + +DSR ++ G +FV I G DGH + Sbjct: 1 MKLDKLLERLDYTVVQGSDST-------EVTTLINDSRKVEEGSVFVCISGAVSDGHKYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118 + +A + + + N ++ V++TR L+L ++ +G ++ Sbjct: 54 A-------DVAAKGAAAVVVEKDVEVPENVTVIKVEDTRYALALMSAAYFGYPADKMKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++ I + +G IG + I + TTP + K + + Sbjct: 107 GITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +E SS GL HR GI G FTNLGRDHI ++ + + + Sbjct: 167 VEAGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLFK 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-E 296 K A DD Y K+V K + ++ + V V Sbjct: 227 QCKLGIAN--VDDKYFKDVFKGSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 DFD +PG+F VYN+L A +C + ++ + L+K V GR E + + Sbjct: 285 VMDFDVEIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAKV-KGRIEMIKVSD-DF 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T Sbjct: 343 TLMIDYAHNAMSLESLLTTLKEYNPKRLVCLFGCGGNRSKDRRFEMGEVSGRLADLTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 403 SDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKGHEDY 462 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + G K + +I+E+L Sbjct: 463 QEIC-GVKHPMDERVLIKEVLE 483 >gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 547 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 149/513 (29%), Positives = 236/513 (46%), Gaps = 25/513 (4%) Query: 7 IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + +L + ++ V ++ ++ G +F A+ G G F+ AIA Sbjct: 28 LTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEFVSVAIA 87 Query: 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 GA A++ A + ++ P+LV + R+ L ++ +YG E++ + +T Sbjct: 88 AGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGIT 147 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GTSGK++ + V+ +G + +G T + + LTTP L + + + Sbjct: 148 GTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRER 207 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ V +E SSH L R+DG++ G+FTNL +DH+D+H+ YFNAK RLF Sbjct: 208 GIDTVVMEVSSHALALGRVDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAV 267 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHNKQQVT 292 + + D M + N+ Sbjct: 268 CAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTL 327 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +G LPG + V NA +AA +C + G D L + + V PGR E V Sbjct: 328 TGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDV-PGRVERV-ER 385 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAH +LE ++ +R T GRI VV G GGDRD+GKRP+MG+ AD+ Sbjct: 386 GQDFLAVVDYAHKPAALEAVIATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADL 445 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +VTDDNPR+EDP IRA+++ G E G+R +AI A+ DV++V Sbjct: 446 LVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGEVREIGDRADAIAAAVRWARTGDVVLV 505 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 AGKGHE+ V +G K D +++ + I+ Sbjct: 506 AGKGHESGQEV-HGVKHPFDDREVLAAAIARIV 537 >gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Nocardioidaceae bacterium Broad-1] gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Nocardioidaceae bacterium Broad-1] Length = 512 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 148/514 (28%), Positives = 217/514 (42%), Gaps = 57/514 (11%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---------------- 53 EL + + E ++ VS S+ + G ++ A+ G++ Sbjct: 23 TLAELAGEFGLDVRG--EARVTGVSLSSQRVLPGDLYAALPGSRAHGAGYAAGAVEAGAV 80 Query: 54 ---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 D A GA + P+L+V+ RK L ++R+Y Sbjct: 81 AVLTD---------AAGAAL-----------LESQGLGEVPVLLVEQPRKVLGALSARVY 120 Query: 111 GKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSP 167 G + + VTGT GK++ + SG + IG T LTTP Sbjct: 121 GNPSGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVIGTVGTRIGGRDVKTPLTTPEA 180 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 L + + +G ++E SSH L R+DG+ F NLGRDH+D+H+T + Y+ Sbjct: 181 PDLHGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHETVEDYY 240 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK LF + D + ++ + + Sbjct: 241 AAKADLFTPERAELGIV---NIDDEHGRRLAAEATIPILTYALHDDTADWRATDIELRPD 297 Query: 288 KQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---VP 343 T+ F PL G++ V N L A D +V + L VP Sbjct: 298 GSSFTVHGPDGLSFPAASPLAGDYNVSNTLAALASIHHAYGDETVVRDVATALAKGSGVP 357 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E + + + VDYAH +++E L +R +T R+IVV G GGDRD GKRPIMG Sbjct: 358 GRLERI-DEGQPFTVVVDYAHKPDAVEAALGTLRPLTESRLIVVIGAGGDRDTGKRPIMG 416 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459 +I+ LAD IVTDDNPR+EDP IR +++ G G E G+R AI AI + Sbjct: 417 EISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGGSASVEEIGDRRAAIERAIGLAQPG 476 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++VVAGKGHET + NG D ++RE L Sbjct: 477 DIVVVAGKGHETGQEI-NGVTHPFDDRQVVREAL 509 >gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] Length = 505 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 137/509 (26%), Positives = 229/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL D++ K +LI + + +I+ V+ S+ + G++F A+ G + DGH FI Sbjct: 4 KLNDVLLKLDQDLIKYVK----GSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI G+ IV S N + VD+ RKF+S F++ Y + + + Sbjct: 60 MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + GV + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS E + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFINEKIDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L + + GR + Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+I+ + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ ++ D++PR E+ I +I GI + +R +AI AI + D++VV Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498 >gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] Length = 502 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 225/498 (45%), Gaps = 17/498 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + K +++ + + + +I +++ S Q G++FVA+ G DGH ++ A ++ Sbjct: 4 LTKVLEDVVFTSNTDSKSFDDIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSR 63 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA V+ + D + ++V+++R LS ++ +G + I+ VTGT Sbjct: 64 GARVFVLQDDIEMADDAIK-------IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTK 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVT 183 GK+++ +++ ++ R+G+++ +G T + + TTP L + + GV Sbjct: 117 GKTTITNYISEVLNRAGINTGVVGTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVE 176 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 VS+E SS GL +HR++ + FTNL DHI + + + L K Sbjct: 177 CVSMEVSSGGLQRHRVEHVDFDVAIFTNLSPDHIGPKEHPTFQNYLECKAKLFTLAKHGI 236 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I + A + + + + ++ Sbjct: 237 INIDDEHAQEIIDIATCDIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAGNYY 296 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PG F +YNAL +C +G+ + E L + V GR E + I +DYA Sbjct: 297 ICSPGMFSIYNALAVIAVCKYLGVKKEITREALTEAKVC-GRVEVLSVLPY-ATIIIDYA 354 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H SLE ILK + R+I +FG G R + +R +G +A D++I+T DNP E Sbjct: 355 HNGVSLENILKTLEHYDHKRLICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFE 414 Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP +I +I +I + +R +A++ A+ M + D++V+AGKGHET ++ G Sbjct: 415 DPLEIIDDIAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLIK-GV 473 Query: 480 KKMSVDCDIIREILGLIL 497 K + +I++E IL Sbjct: 474 KVPFSEREIVKEEARKIL 491 >gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] Length = 505 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 137/509 (26%), Positives = 229/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL D++ K +LI + + +I+ V+ S+ + G++F A+ G + DGH FI Sbjct: 4 KLNDVLLKLDQDLIKYVK----GSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI G+ IV S N + VD+ RKF+S F++ Y + + + Sbjct: 60 MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + GV + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS E + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFIDEKIDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L + + GR + Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+I+ + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ ++ D++PR E+ I +I GI + +R +AI AI + D++VV Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498 >gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia R551-3] gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas maltophilia R551-3] Length = 502 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 150/493 (30%), Positives = 215/493 (43%), Gaps = 23/493 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L+ + + + + DSR ++ G FVAI G G F+ Sbjct: 5 MLLSQLLPD-----------VALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA A GA AI+ A + + + V R + A + +G + + Sbjct: 54 EQARAAGAGAIL-----FEPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S + Q G S IG + TTP + + L+ L Sbjct: 109 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V++E SSH LDQ R+D + FTNL RDH+DYH +Y AK RLF Sbjct: 169 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K + + A + S G + + + ++++G Sbjct: 229 GLKAAVINLDDAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDG 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F V N L AG A G A + E L L + GR +G Sbjct: 289 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMNRLGGEDGLPT 348 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L ++ G + VFGCGG+RD GKRP M IA LA+ IVTD Sbjct: 349 VVVDYAHTPDALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMAAIAERLANQVIVTD 408 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR ED + I A+I+ G + +R AI A++ N D++++AGKGHE Sbjct: 409 DNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKGHEPYQE 468 Query: 475 VTNGEKKMSVDCD 487 V NG + D + Sbjct: 469 V-NGVRHDFDDTE 480 >gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 520 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 152/479 (31%), Positives = 220/479 (45%), Gaps = 17/479 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + V+ ++ + G +F A+ G G +AI +GA A++ +A Q T Sbjct: 39 PDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQ---LT 95 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 TP L+ R L A+ +Y E ++ +TGTSGK++ V+ + +G + Sbjct: 96 GGRTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRT 155 Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG A + LTTP L L+ ++ Q V V +E SSH L R+DG Sbjct: 156 AGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGRVDGT 215 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL RDH+D+H T YF AK LF+ P + + D + M Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321 V + G + ++ QQ T+ LPG + V N LVA L Sbjct: 276 DAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLVALAL 335 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A+G+ L + VPGR E + VDYAH +L +L +++ Sbjct: 336 LDAVGVSPEQAAPGLLQ-TRVPGRMEEIDAGQ-DFLALVDYAHKPGALRAVLSSLKR-PD 392 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 R+ VVFG GG+RD GKR MG A +LAD+ +VTDDNPR EDP IR EI+ G+ Sbjct: 393 RRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGVTESGC 452 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R AIR A+ DV++VAGKGHET + D + E L Sbjct: 453 AAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQRTGEHTR-PFDDRVELAEALR 510 >gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. avium ATCC 25291] gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] Length = 520 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 153/479 (31%), Positives = 219/479 (45%), Gaps = 17/479 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + V+ ++ + G +F A+ G G +AI +GA A++ +A Q T Sbjct: 39 PDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQ---LT 95 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 TP L+ R L A+ +Y E ++ +TGTSGK++ V+ + +G + Sbjct: 96 GGRTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRT 155 Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG A + LTTP L L+ ++ Q V V +E SSH L R+DG Sbjct: 156 AGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGRVDGT 215 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL RDH+D+H T YF AK LF+ P + + D + M Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321 V + G + ++ QQ T+ LPG + V N LVA L Sbjct: 276 DAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLVALAL 335 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A+G+ L + VPGR E + VDYAH +L +L +++ Sbjct: 336 LDAVGVSPEQAAPGLLQ-TRVPGRMEEIDAGQ-DFLALVDYAHKPGALRAVLSSLKR-PD 392 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------ 435 R+ VVFG GG+RD GKR MG A +LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 393 RRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGATESGC 452 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 IE G+R AIR A+ DV++VAGKGHET + D + E L Sbjct: 453 AAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQRTGEHTR-PFDDRVELAEALR 510 >gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 486 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 137/500 (27%), Positives = 217/500 (43%), Gaps = 31/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + E +I + DSR +A ++ + G DGH FI Sbjct: 1 MKLSQMFEN---------------APEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 I +G + IV S ++ + V+N + L+ AS YG + Sbjct: 46 DDVIEKGVKCIVHSKPVD------DMKKGVAYIQVENVNRTLNRVASMFYGHPSRKMKVF 99 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKS++ S ++ + + + + LTTP + + K + + Sbjct: 100 GVTGTNGKSTITSIIRDVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAVLIHKTMKDMV 159 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ V++E SSHGL+ R+ + F+NL DH+D+H T + YF AK +LF L Sbjct: 160 EHGMQAVALEVSSHGLELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-L 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 KE A++ ADDAY ++ + + + + T+ + Sbjct: 219 KKEGVAVLNADDAYVDQLADATEASVVTYGIDN--HATYQAENIRIEKTGSRFTLVHGTE 276 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ L + +YN L A GI L +L + + GR E + + Sbjct: 277 RYEVSTNLVALYNIYNLLGAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDEGQL-FNV 335 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT + +E + + + IT II VFG G RD KR + G+IA D I+T Sbjct: 336 IVDFAHTPDGMEKVFEYAKDITEDGHSIIAVFGSAGKRDTKKRRVFGEIASRYCDSIILT 395 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+PR EDP +I EI GI I +R AIR AIE N +D +++ GKG E Sbjct: 396 EDDPRDEDPREIANEIKSGISDTNNIFIADRYAAIRQAIESANVKDTVLILGKGDEVFMY 455 Query: 475 VTNGEKKMSVDCDIIREILG 494 G + D ++ R + Sbjct: 456 REFGREPWMGDHNVARHCIR 475 >gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 498 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 128/506 (25%), Positives = 237/506 (46%), Gaps = 29/506 (5%) Query: 1 MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 M+L +L+ +++N ++ + + + + SDSR ++ +F+ I G D H Sbjct: 1 MRLSQVIELLGNSVLQVVNPGNV------DPEFDHIESDSRGLKERNLFICIKGTNFDSH 54 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPE 115 L + +GA A+V ++ PI+ V ++R + L + Sbjct: 55 LIARELQRKGAVALVAEMPIEDEEVV------VPIVYVKSSRLVEALLTMEEYCHPYRKL 108 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173 + VTGT+GK+++ + + + + IG + + + + TTP P+ LAK Sbjct: 109 TTIGVTGTNGKTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKL 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + + +E SSH L +R++G++ G +N+ RDH+D+H T Y+ +KM+L Sbjct: 169 LQLSTKLKSEYFIMEVSSHSLSMNRVEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKL 228 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L + + + ++ + TI Sbjct: 229 FSLLKTNGIAVVNGDKI----NIADIHISRNRITTYGFGDESDYRIENLDISRTGMDFTI 284 Query: 294 SVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351 ++ GE YN A ++ D + + + VPGRFEFV Sbjct: 285 QTPYGSSHRIYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEA 344 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G + VD+AHT ++LE +LK R +T GR+I+VFG GG D+GKRP+M +++ +D Sbjct: 345 TKYGFDVVVDFAHTPDALEKLLKTARRLTPGRLILVFGAGGSADKGKRPLMSEVSSKYSD 404 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I+T D+P+ +DP +I ++ G+ ++ +R EAI A+ + N+QD++++AG+G Sbjct: 405 VVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAGRG 464 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HE I+ ++ D ++++IL Sbjct: 465 HEDFQILGE-KRIPFNDKQVVKDILE 489 >gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 493 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 144/503 (28%), Positives = 224/503 (44%), Gaps = 29/503 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M++ +LI + + +I V D+ I G F+A GN G +I Sbjct: 1 MQIGELIKDWPCTMKGSIR--------VEIKRVEDDANLILPGDAFIARKGNNSSGISYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ +GA AIVV + PI+ V N F++ ++++Y E ++ Sbjct: 53 DSALEKGAAAIVVDDENYFNEADLP----VPIIWVPNCLSFIAYASAKIYNFPAEALTVI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKAL 174 AVTGT+GK++V F+ QI + + IG + + LTT + Sbjct: 109 AVTGTNGKTTVTHFIGQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLF 168 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 V +V +EASS GL++HRLD + G F N+ DHI+ H + + Y +K Sbjct: 169 KEAIRLDVPYVVLEASSIGLEKHRLDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQI-- 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L + I D + A G + + I Sbjct: 227 ---LSTLAKKNIINSDDSVCRSIGLATKGKRIFFGKGSH-VDYFFQTLVDGPASTTCCIQ 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + PL G++Q N L A + + + + L + GRFE N Sbjct: 283 HKKEKHIVNIPLVGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFE-HVENQL 341 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G I VDYAHT ++++MIL+ ++ T R+IV+F CGG+RD+ KRP MG IA AD I Sbjct: 342 GLSIVVDYAHTPDAMKMILQTLKKHTKRRLIVMFSCGGNRDKAKRPKMGMIASIYADYII 401 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T DN R+E+P++I +I G +IE NR EAI A+ K D +V+ GKGHE Sbjct: 402 LTTDNARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKGHEK 461 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 + + +K D +RE++ Sbjct: 462 TQQIGDKQK-YFSDLVFVREMIR 483 >gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] Length = 520 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 215/479 (44%), Gaps = 26/479 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 V+ S ++ G +FVA+ G K G F A+A+GA A++ D A + Sbjct: 37 LTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAVARGAVAVLTD-----DDGVAAVP 91 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSF 145 + P+LV + R AS G ++ V T FV + + Sbjct: 92 PDVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGKTTTTYFVDAALRAHHARTA 151 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G I A ++ TT L L+ +G ++ E SSH L R+ G + Sbjct: 152 VLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTTEVSSHALALGRVLGTRF 211 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL RDH+D+H + YF K RLF + + DDA+ + + + A Sbjct: 212 DVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV--VDDAWGRRLAEEAAIPV 269 Query: 265 CRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317 V + + V + + PLPG V NA + Sbjct: 270 ETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGARHVAHSPLPGLVNVSNAAL 329 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEMILKNI 376 A L A G+ A +E + H +PGR E V G + VDYAHT ++L + L+ + Sbjct: 330 AIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLCLVDYAHTPDALVLALEAV 389 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R IT GR+++VFG GDRD+GKRPIMG+IA LAD+ +VTD+NPRSEDP +RA I+ G+ Sbjct: 390 RPITPGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDENPRSEDPASVRAAILAGV 449 Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 E +R +AIR A+ + D ++V GKGHE + G D D+ Sbjct: 450 RDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHEPTQEIA-GVFHRYNDRDV 507 >gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] Length = 521 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 129/522 (24%), Positives = 226/522 (43%), Gaps = 44/522 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL+ + +I P + I ++ DSR ++ GW+FVAI G DGH ++ Sbjct: 5 LRDLL-------VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDH 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ A V+ ++ ++ P++ V ++R L+ A+ Y ++ + Sbjct: 58 ALK----AGAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYAHPAAHLRTIGI 113 Query: 123 TSGK------SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 T K V+ ++ R+G+ S R +TP + L Sbjct: 114 TGTKGKSTTTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNT-TRQSTPEAPEIQGLLHE 172 Query: 177 LSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY-------- 226 + G ++ +E++SH L +RL + F N+ +H+DYH + + Y Sbjct: 173 MLDAGCSYAVLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLF 232 Query: 227 ------FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + + + + AI ADD + + A + R+ + Sbjct: 233 AMLGEGQSEASCHQGDRVERPVWAIANADDPNCQFFLDAAPSYARRLTFGVRAAADVRAH 292 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + + + ++ + +PG F V NAL A + ++ G+ + LE + Sbjct: 293 AVASGPSGSHLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITALEAVP 352 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 + GR + + + VDYAH +S E +L +R +T GR+I VFG G+RD+ KR Sbjct: 353 GIRGRMQPIHLGQ-PFDVIVDYAHNPDSFEQVLSMLRPLTKGRMIAVFGSAGERDRAKRS 411 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTA 452 + G+IA AD+ ++TD++PR EDP I AEI+ G G+ NR EAI A Sbjct: 412 VQGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHVA 471 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I D++++ GKGHE I +G + D+ + L Sbjct: 472 IAAAQPGDLVLLLGKGHEGSIIYASGAIPW-DEADVACQALR 512 >gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] Length = 515 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 157/504 (31%), Positives = 239/504 (47%), Gaps = 23/504 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL + E E + V+ S+ ++ G ++ A+ G + G F+P Sbjct: 14 RLGDLADRLAAEPDAGTVNLRPGPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVP 73 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 A GA A++ A + SAT ++ P+LVV + R L AS +YG ++ Sbjct: 74 AAARAGAVAVLTDPAGA----SATAQAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIG 129 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S A V+ + +G + IG T A D+ TTP L L+ Sbjct: 130 VTGTAGKTSTAYLVESGLRAAGHVTGLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAAR 189 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GVT V +E SSH L R+ G++ G +TN G DH+D+H YF AK +LF+ Sbjct: 190 ERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG-- 247 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ DD + + ++A + G + V Q+ T+ Sbjct: 248 -RCEVEVLNHDDPALRPLYRQAT---VTYSAAGDRSATWWADAVGGEGYAQRFTLHGPDG 303 Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 LPG V NAL+A + +A G+D+ + VPGR E V R Sbjct: 304 LALPAGVALPGRHNVANALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVR-APGPVR 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH ++++ L +R +GR I + G GGDRD+GKRP+MG A + AD+ +VT Sbjct: 363 GVVDYAHKTDAIVAALAALREFGAGRRLICLLGAGGDRDRGKRPLMGIAAAEGADVVVVT 422 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPR+E+P +IRAE++ G +E R AI A+ + DV+ + GKGHE Sbjct: 423 DDNPRTEEPAEIRAEVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLGKGHE 482 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 V +GE + D + L Sbjct: 483 QGQEV-DGEVQPFDDRTELAAALR 505 >gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus opacus B4] Length = 524 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 155/524 (29%), Positives = 236/524 (45%), Gaps = 37/524 (7%) Query: 1 MKLQDLIY---------KDFPELINQLSIFPMQWRERKI-NEVSSDSRH--IQAGWIFVA 48 MK+ D + L P E I V D R I G +F A Sbjct: 1 MKVTDGLRPAQPVRTTVSALAALAGARVEAPSGTAEHVIVTGV--DLRAQGIVEGDLFAA 58 Query: 49 IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 + G + G F A+ +GA AI+ A + + ++ P+LV D+ R L ++ Sbjct: 59 LPGARAHGAEFAADALDRGATAILTDEAG--LALVSALGTDAPVLVHDDPRGVLGELSAT 116 Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTP 165 +YG+ E + + +TGTSGK++ + V+ +G ++ +G +S + LTTP Sbjct: 117 IYGRPSEKMQVIGITGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTP 176 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 L + + QG+ V +E SSH L R+DG++ G+FTNL +DH+D+H+ + Sbjct: 177 EAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLSQDHLDFHRDFED 236 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHNAGCRVLSVGYQGKFIH 278 YF AK RLF + + D M G Sbjct: 237 YFAAKARLFAAESSVHAQHAVICVDDVWGRRMAEVARGAHSIVTTVATTPETGGAVWTAG 296 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 V A +++ + EG D LPG++ V NA +A LC +G+D + + Sbjct: 297 PATVSASGSQKFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAVAGIAG 356 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 + V PGR + + VDYAH ++E ++ +R GR+ VV G GGDRD GK Sbjct: 357 VDV-PGRVQRIDRGQ-DFLAVVDYAHKPAAVEAVIATLREQARGRVAVVVGAGGDRDAGK 414 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIR 450 RP+MG A AD+ I+TDDNPR+EDP IRA I G E +R +AI Sbjct: 415 RPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESERGQVWEVADRAKAIA 474 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A+ DV++VAGKGHE + +G K D ++ + + Sbjct: 475 DAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRAVLGDAIE 517 >gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 464 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 147/496 (29%), Positives = 231/496 (46%), Gaps = 42/496 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + L+ I + +I + +++ Q G +F+A+ G G +I Sbjct: 1 MNISQLLANIVQTKI-----------DIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILA 119 QAI +G AI+V S I P + +DN ++L A+ Y NI++ Sbjct: 50 NQAIDKGCVAILVDSK--------EIECVIPSIRIDNLSQYLQTLANTFYKNAIKVNIIS 101 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TGT+GK+SVA F+ Q+ + G+ + IG Q + TTP + L + L Sbjct: 102 ITGTNGKTSVAYFISQLLTKLGIKNGLIGTLGIT-HSQQLSLNTTPDILTLYQVLDNYYQ 160 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + H +E SSH L Q R+ G+ + FTNL +DH+DYH T Y K +LF L Sbjct: 161 NNIHHAILEVSSHALTQDRIAGLNIKQAIFTNLTQDHLDYHHTLDKYQATKEKLFV--LD 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ DD++ K + + S+G + + V+ Sbjct: 219 TVESVILNQDDSHYKHFLNITKDKKRISYSLGDFDSIKTI----------EQGFLVQLDH 268 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F P GEF + N L A A+G ++ +L PGR + + Sbjct: 269 YVFEIPFLGEFNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQR----IEPHLAW 324 Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT +++ + ++ +I +VFGCGG+RD+ KR MGKIA +LAD I+T+D Sbjct: 325 IDYAHTPDAIGNAITTLKKHYPNFKIRIVFGCGGNRDKDKRAEMGKIASNLADTIILTND 384 Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSE+P+ I I+ GI NR AI TAI L + + L++AGKGHET+ Sbjct: 385 NPRSENPKTIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKGHETIQQF 444 Query: 476 TNGEKKMSVDCDIIRE 491 ++ + D +I + Sbjct: 445 SD-KTIYLNDLEIAQN 459 >gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] Length = 487 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 237/479 (49%), Gaps = 16/479 (3%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P I E++ DSR ++ G +F+A+ G ++DG + I A A ++ Sbjct: 8 LLPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIAD-----AIARGAAAVAFE 62 Query: 80 QDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 + +A++ +++ +LV V LS A R YG+ ++ VTGT+GK+SV+ + Q Sbjct: 63 AEGAASMHADSAVLVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQA 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G +G A + + TTP P+ + L+ L G V++E SSHGLD Sbjct: 123 LDLLGQPCGIVGTLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLD 182 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ ++ FTNL RDH+DYH + +AY AK +LF + + DDA+ +E Sbjct: 183 QGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAWPNLRCRVINL--DDAFGRE 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + H + S+ F++ + + + + + L G F + N Sbjct: 241 LAAQTHESRLIGYSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNL 300 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + + +L+ L +L GR + +G + + VDYAHT ++LE +L+ Sbjct: 301 LAVVGALLGLDYALDEILKVLPQLQGPAGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEA 359 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R GR++ +FGCGGDRD+GKRP+M +A LAD+ VTDDNPR+E+P +I A+I G Sbjct: 360 MRPHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTEEPAQIVADIRAG 419 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 R +AI + DVLV+AGKGHE + G ++ D + Sbjct: 420 FAAPERVQFIHGRGDAIARLVAQAEAADVLVLAGKGHEDYQEIM-GVRQPFSDLIEANK 477 >gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 492 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 134/502 (26%), Positives = 217/502 (43%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ L + +I+++ DSR G +FV IVG + D H F Sbjct: 1 MKLEQLLEGVPFTLAQGS-------LDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+G A+V+ L ++ V+++R ++L ++ L+G + + Sbjct: 54 ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGNPSRKMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG + TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ G+ G FTNL DHI + + + Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD ++ +++ ++ H+ V V G Sbjct: 229 RCDVGVVN--IDDENTEALLEGHTCKLITYGRAEQADYRETGFELLRTHDFLGVKFHVTG 286 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K + D +PGEF VYNAL A + +G+ + VV GR E V + Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGL-PDQAIHDGLGKCVVKGRVELVPISK-KF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +AD +I+T Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +DN R E E I A+I G+ F+E +R++A+ A++ + D++ V GKGHE Sbjct: 405 EDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G K ++ +++ E Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485 >gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] Length = 486 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 136/501 (27%), Positives = 222/501 (44%), Gaps = 27/501 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK L+ + + K+ V +DSR I+ G +F+ I G DGH F Sbjct: 1 MKCSQLLEHLEYTCLQGS-------TDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 EA +A + + + + ++ VDNTR ++L ++ +G E + Sbjct: 54 A-------EAAEKGAAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT GK++ V+ + + +G IG I TTP + + Sbjct: 107 AVTGTKGKTTTTYMVKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + V +EASS G R GI G FTNL DHI + F + +L Sbjct: 167 AEEDCDVVVMEASSQGFKLDRTAGIMFDYGLFTNLSPDHIG--PNEHKDFAEYLSCKAKL 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296 + DD + E+ K A + ++ + V ++ Sbjct: 225 FNQCRYGYANIDDEHFAEITKNATCPIETFGLNENADLVAYDVELTRDRDFLGVDFGLKG 284 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + +PG F V+NAL A + +G+ + + L V GR + V T Sbjct: 285 TCEGKISCGVPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFSV-KGRVQIVPTGY-DY 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + +LE IL +R R+I +FGCGG+R + +R MG+++ LAD I+T Sbjct: 343 TLIIDYAHNAVALESILNTLRAYDPPRLISLFGCGGNRSKLRRYEMGEVSGKLADFTIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +I+ G+ +I +R EAI A+ D++V+AGKGHET Sbjct: 403 SDNPRFEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G+K + +I++++L Sbjct: 463 QEIE-GKKYHMSEEEIVQDVL 482 >gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] Length = 497 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 144/468 (30%), Positives = 218/468 (46%), Gaps = 19/468 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + SDSR ++ G +F + G DGH FI + + G ++ D Sbjct: 32 SRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIERPTDGLDN-------- 83 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + V + R + A+RL G + ++AVTGT+GKS+ + ++ + G+ + IG Sbjct: 84 -WIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACGIKTGLIG 142 Query: 149 PT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 TTP L + + + G +E SSHGL Q R+ G Sbjct: 143 TVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQGRISGSTYDGA 202 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +H+DYH T + YF AK LF E L + + D + +++ R ++ Sbjct: 203 LFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLAARFPSSLTWG 262 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L G + + P+ G F V NAL AA LCI +G Sbjct: 263 LGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGRVALPMTGRFNVENALGAASLCIGLGC 322 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V++ LE + VPGR E + S G + VD+AHT +L +L +R + R+I V Sbjct: 323 SPEAVVKGLETMPQVPGRMERI-NLSNGVTVIVDFAHTEIALTNLLATLRPLA-KRLISV 380 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443 FG GG+R G RP +GKIA AD IVT DNPR+EDP +I I+ G+ G F Sbjct: 381 FGHGGERFAGARPELGKIAGQTADRVIVTMDNPRNEDPAEIARAIVAGLEGGKASFSTVL 440 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +R +A+ A++ + DV+V++GKG E + G K D D++ E Sbjct: 441 SRRDAVFAALDEAERGDVVVISGKGAEPYLEIK-GVKYPYSDRDVVGE 487 >gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 495 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 212/474 (44%), Gaps = 12/474 (2%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ ++ + DSR ++ G FVAI G G F QA GA AI+ + + Sbjct: 18 RDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPA 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143 + V R L A +G ++ VTGT+GK+S + Q GL Sbjct: 78 DA-----IAVPGLRSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLR 132 Query: 144 SFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + TTP + + L L G V++E SSH LDQ R+DG+ Sbjct: 133 GGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGV 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL RDH+DYH +Y AK RLF + + + + Sbjct: 193 HYDVAVFTNLTRDHLDYHGDMASYGEAKARLFLREGLRSAVLNLDDEFGRVLAGRLAEGV 252 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V S G +G + + + +S + PL G F V N L G+ Sbjct: 253 RLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVL 312 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+G A V L +L V GR +G + + VDYAHT ++LE L ++R Sbjct: 313 HALGDSVACVAAILSRLQPVAGRMNRLGGDGERPLVVVDYAHTPDALEQALASLRAHAGA 372 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 R+ VFGCGG+RD+GKRP+M +IA AD +VTDDNPR ED + I A I+ G Sbjct: 373 RLTCVFGCGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGFAAPEAV 432 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI QDV++VAGKGHE + G + D ++ R L Sbjct: 433 QVERDRALAIARAIARSGAQDVVLVAGKGHEPYQEIA-GVRHPFDDTEVARAAL 485 >gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanobacter sp. RED65] gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanobacter sp. RED65] Length = 490 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 143/490 (29%), Positives = 233/490 (47%), Gaps = 17/490 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + + + + + + +N + DSR ++ G + + D +I QA+ + Sbjct: 4 IGTSIVKWLGKQCPAELLGQAQTLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEK 63 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 A ++ YS + V + F + + G +++ + VTGT+ Sbjct: 64 RAVLVIGEIEYSAHN----------YCRVSDVMTFAASVLNHELGSPSQHMDVIGVTGTN 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GKSS+ +V Q+ S +G T P+ + Sbjct: 114 GKSSIVFYVAQLLTELRHSCAVMGTLGYGFWNDLKPTGMTTLPLPRLHQALADVKKDCKA 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +++E SSHGL Q RL G+ FTNL RDH+DYH T AYF+AK LF+E + A Sbjct: 174 IAMEVSSHGLHQKRLSGVAFNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKEPGLQW--A 231 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +I DD Y K+++ + + H QQ+ + G++ + Sbjct: 232 VINQDDDYGKKLLSEPVSYSSYSYGTDEKSDL-HFCITRTTDTGQQLALRFHGQEQEVFL 290 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GEF YNA + IA+G D + + + L V GR E + +N + VDYAH Sbjct: 291 PLLGEFNAYNAAASVLSVIAMGFDFSSACKAVTALRPVSGRMELIDSNDSQPNVLVDYAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +++E +LK+ R G ++ + GCGGDRD+GKRP+M + A++ AD ++T DNPRSE Sbjct: 351 TPDAVEQVLKSARKHCKGNLVCLVGCGGDRDRGKRPLMAQAAINFADSVLLTSDNPRSES 410 Query: 425 PEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 PE+I A+++ G+ + +R +AI++AI D++V+ GKGHE + +G K Sbjct: 411 PEQILADMVQGLKKEVPSELDRKQAIQSAILNAKSDDLIVIVGKGHEDYQEI-HGVKYPF 469 Query: 484 VDCDIIREIL 493 D + RE L Sbjct: 470 SDQETAREAL 479 >gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 176/481 (36%), Positives = 256/481 (53%), Gaps = 13/481 (2%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 P++ + + D R + G +F A G + +G FIP A + + A + Sbjct: 13 DPVPVECDGIDVTGFAIDHRKVAPGTVFGAFPGARVNGEDFIP--------AAIAAGAVA 64 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + + + R+ + A+ + PE ++AVTGT+GK+S +QI + Sbjct: 65 VVARPEAVVEGAVHIPDAEPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWR 124 Query: 139 RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G S IG T + + +TTP + +S L+ +G+TH++ EASSHGLDQ+ Sbjct: 125 MAGHRSASIGTLGVTTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQY 184 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R +G + AG+FTNL RDH+DYH + +AYF AKMRLF+E++ + A+++ADD +S + Sbjct: 185 RSEGPVVAAGAFTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAI 244 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A RVL+VG +G+ I L QQ+ + EG+ PL G +Q NALV Sbjct: 245 DHARRRALRVLTVGERGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALV 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +AGL +A G D + L +L V GR E G +YVDYAHT +++ +R Sbjct: 305 SAGLVLATGGDPTQTFDALGRLQPVRGRLERAAITRTGAPVYVDYAHTPDAITAACAALR 364 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR+IVVFG GGDRD GKR MG A AD+ IVTDDNPR EDP IRA ++ G Sbjct: 365 PHVEGRLIVVFGAGGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCT 424 Query: 438 GFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG---EKKMSVDCDIIREIL 493 G + G+R AI AI K D+++VAGKGHE ++ G D ++RE Sbjct: 425 GVARETGDRRAAIAEAIAQAGKGDIVLVAGKGHEQGQVIGRGDAARTLPFDDVAVVRECT 484 Query: 494 G 494 G Sbjct: 485 G 485 >gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] Length = 496 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 148/489 (30%), Positives = 216/489 (44%), Gaps = 13/489 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL Q R+ I+ + DSR +Q G FVA+ G FI A A+GA AI+ Sbjct: 7 LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFE 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + V R L A R +G + ++ VTGT+GK+S Sbjct: 67 PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121 Query: 133 VQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q R G+ S G TTP + L + L L G V++E S Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVS 181 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH LDQ R+DG+ FTNL RDH+DYH + Y AK RLF + + + Sbjct: 182 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAAVINVDDLF 241 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 V + G+ + + + + + PL G F Sbjct: 242 GLRLLHGLAKGVRRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRF 301 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L AG+ A+ + + L L + GR +G + VDYAHT ++L Sbjct: 302 NVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVVDYAHTPDALG 361 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED + I A Sbjct: 362 QVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVA 421 Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I+ G + +R AI AI + + DV+++AGKGHE V G + D + Sbjct: 422 DILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTE 480 Query: 488 IIREILGLI 496 + +L + Sbjct: 481 VAMRVLAAM 489 >gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 501 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 158/507 (31%), Positives = 247/507 (48%), Gaps = 35/507 (6%) Query: 1 MK--LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK L+D++ K ++ L I + I +S S+ IQ IFVA G DGH Sbjct: 1 MKKRLKDILKK-----VDVLKIVGKNTSKL-IERISMYSKIIQKNMIFVAKKGKTTDGHE 54 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 FI AI GA IV ++I ++V ++ L + +S Y + I Sbjct: 55 FITNAIQNGAHTIVCEK------IPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIK 108 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK+SVA+ + Q+ + G + I S TTP+ I + K L+ Sbjct: 109 LIGITGTNGKTSVATILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLN 168 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +G + +E SSHG+ Q R+ G+ G FTN+ DH+DYH++ Y + K FE Sbjct: 169 LSIRKGCKYAFMEVSSHGIHQKRIAGLLFQGGVFTNITHDHLDYHESFDHYLSTKKFFFE 228 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L K++ A+I +DD S +++K + G + ++ + Sbjct: 229 N-LSKKAFALINSDDENSYKIIKDIL---SKTYFYGLKKNANFKIQILKESIHGSQLLID 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 K F L G F VYN L I +G +L+ ++ + + GRFE +NS G Sbjct: 285 GHKIF---TKLIGTFNVYNLLAGYATAILLGKKKDNILKKIKNIKPIRGRFEQFISNS-G 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R+ VDYAH + L+ +L ++ I + G++I V GCGG+RD KR +MGKI + D++ Sbjct: 341 IRVIVDYAHNPDGLKTVLNTLKKIKNDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDVS 400 Query: 414 IVTDDNPRSEDPEKIRAEII-------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I T DNPR ED EKI ++ + NR +AI TAI++ K+D++++AG Sbjct: 401 IFTSDNPREEDREKILVDMKNFKSSIYKDKESILTFVNRKKAIETAIQIAKKKDIILIAG 460 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHET + G + D I + +L Sbjct: 461 KGHETYQEIK-GIRFPFNDMKIAQYLL 486 >gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 488 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 146/497 (29%), Positives = 232/497 (46%), Gaps = 30/497 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L+ E + I ++++S+ ++ G +F+AI G DGH FI Sbjct: 1 MLLRHLLDILEYEELYGSDA-------VDITGITNNSKTVKPGDLFIAIAGYSIDGHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 QAIA GA+A++ Q + P + V ++RK L+L A R Y + ++ Sbjct: 54 DQAIAAGAKAVIGEKEIGKQ--------SVPYIKVTDSRKALALAAKRFYKNEQNKAIMI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + ++ I + G + G TT + L K L+ Sbjct: 106 GITGTNGKTTTSYMLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAA 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V +E +SH L QHR+ GI+ G FTNL +DH+DYH + +AYF AK+RLFE+ Sbjct: 166 ---SNDQVVIMEVTSHALMQHRVYGIEFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQ 222 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L P I + + + ++G + L V Q T++ + Sbjct: 223 LAPAGKAVIQAQGEWGEAFLASLKQRDVPYIYTLGGAEATLQLSNVRI-ERPMQATLAED 281 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K +D PL GE VYNA +A +G+++ +L LEK VPGRFE + +G Sbjct: 282 HKAYDLKVPLLGEHNVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIHH-PKGA 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAHT ++ LK +++ RII VFG G+RD KR M ++ +D I+T Sbjct: 341 NIVIDYAHTEDAFYHCLKTAEELSARRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILT 400 Query: 417 DDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV-H 473 D+ E E++R ++ + + +R AI A E+ D + + GKGHE Sbjct: 401 MDDLNGESFERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITGKGHEAYRQ 460 Query: 474 IVTNGEKKMSVDCDIIR 490 D D ++ Sbjct: 461 SY---HLPTQSDKDTVQ 474 >gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter diazotrophicus PAl 5] gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 487 Score = 276 bits (705), Expect = 7e-72, Method: Composition-based stats. Identities = 194/490 (39%), Positives = 263/490 (53%), Gaps = 14/490 (2%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +++ + + I V++DSR + G +FVAI G + DG + A Sbjct: 5 LSQVLAAAGLSAPPGADPAITGVTADSRRVTPGMLFVAIPGTRADG--------SAFIPA 56 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 + + A ++ T P++ VD R+ L+L A+ L G P++++AVTGT+GK+S Sbjct: 57 AIAAGAAAIVAPRGTPAPGVPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTV 116 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 F++QI + IG I+ LTTP + LA L+ ++ GVT V++ Sbjct: 117 DFLRQIWGHQHRRAASIGTLGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAI 176 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAI 245 EASSHGLDQHRLDG++L A FTNL RDH+DYH T AY AK+RLF+ LLP + A Sbjct: 177 EASSHGLDQHRLDGLRLSAAGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAAN 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D A + A G + VG G I L + Q + I+ G D + Sbjct: 237 ADMDTATLDALRDIAARRGLDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLA 296 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG FQ NAL+AA L A ++ L L V GR E G YVDYAHT Sbjct: 297 LPGRFQADNALLAAALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAHT 356 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L +R SGR+I VFG GGDRD+GKRP+MG+ A ADIAIVTDDNPR+EDP Sbjct: 357 PDALARLLDALRPHASGRLIAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNPRTEDP 416 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 IR E++ G PG IE G+R AI + ML DVLVVAGKGHE + D Sbjct: 417 AFIRGEVLAGAPGAIEIGDRARAIAEGLSMLRAGDVLVVAGKGHEQGQTIGTAT-LPFDD 475 Query: 486 CDIIREILGL 495 +IR++ G+ Sbjct: 476 ASVIRDLAGV 485 >gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] Length = 476 Score = 276 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 181/494 (36%), Positives = 253/494 (51%), Gaps = 22/494 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L E + + + D R + G IF A G + +G FI Sbjct: 1 MKLNQLDQSITGE-----------GGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A+V + D R + A+ + P +AV Sbjct: 50 ADAVRSGAIAVVT--------RPGVTVEGAVHIASDEPRAAFAQLAAAFFAPFPATAVAV 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + +G + IG T + LTTP + ++ L+ Sbjct: 102 TGTNGKTSTVEMTRQLWRMAGHHAASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAR 161 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH++ EASSHGL Q+R +G+++ A +FTNL RDH+DYH AY AKMRLF E+L Sbjct: 162 EGVTHLAFEASSHGLTQYRTEGLEVSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLS 221 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+++ADD S V+ A G R+++VG +G + L + Q + I E Sbjct: 222 PTGTAVVWADDVQSGRVIDLARARGNRLMTVGTRGSTLKLVERHPTLLGQGLVIEDEHGT 281 Query: 300 FDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G +Q NALV+AGL +A G D L +L +L V GR E G + Sbjct: 282 IHKVQLPLIGAYQAANALVSAGLVLATGGDVTTTLANLSRLQPVRGRLERAAIARSGAPV 341 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAHT ++LE + ++ GR+IVVFG GGDRD GKR MG++A AD IVTDD Sbjct: 342 YVDYAHTPDALEAAIAALKPHAGGRLIVVFGAGGDRDPGKREAMGQVASMQADRVIVTDD 401 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 NPR+EDP IR +++ G G IE G+R EAI AI QD++++AGKGHE IV + Sbjct: 402 NPRTEDPAAIRTQVMRGATGAIEIGDRREAIAAAIAEAGGQDIVLIAGKGHEQGQIVGDL 461 Query: 479 EKKMSVDCDIIREI 492 D + RE Sbjct: 462 V-LPFDDVAVAREC 474 >gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 487 Score = 276 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 211/484 (43%), Gaps = 16/484 (3%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS+ + +I + +DSR IQ ++ + G DGH F+ + + +GA IV + Sbjct: 2 KLSLLFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKD 61 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134 + V+N + L++ AS+ YG + VTGT+GKS++ S ++ Sbjct: 62 IETMH------KGVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIK 115 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + + + LTTP PI + ++ + G+ V++E SSHGL Sbjct: 116 DVYSHFKPCGYIGTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGL 175 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + R+ + FTNL DH+D+H T + YF A L + A+I DD ++K Sbjct: 176 EMGRVQSVDFDVAVFTNLTYDHLDFHGTLENYFEA-KHKLFLQLKSDGVAVINVDDPFAK 234 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ + N + G+ + L + +YN Sbjct: 235 RMVAGCKAHIVSYGVTADAD--YRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYN 292 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+ ++ +L +L V GR E + + VD+AHT + +E + + Sbjct: 293 LLGAIAAMCESGVALKEIVPYLSELTQVDGRMERIDEGQA-FNVIVDFAHTPDGMEKVFE 351 Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +IT II VFG G RD KR + G+IA D I+T+D+PR E+P I EI Sbjct: 352 FANSITPDGNAIIAVFGSAGKRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANEI 411 Query: 433 IHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GI I +R AIR AIE N D +++ GKG E G + D R Sbjct: 412 KGGIKDTNNIFIEDRYSAIRQAIESANVNDTVLILGKGDEVFMYREFGREPWIGDHIAAR 471 Query: 491 EILG 494 ++ Sbjct: 472 HVIR 475 >gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 486 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 141/500 (28%), Positives = 224/500 (44%), Gaps = 31/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + +I + DSR +A ++ + G DGH FI Sbjct: 1 MKLSQIFEN---------------APDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 IA+GA+ IV S ++ + V+N + L+ AS YG N+ Sbjct: 46 EDVIAKGAKCIVHSKPVE------HMKKGIAYIQVENVNRTLNRVASLFYGHPSRNMKVF 99 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKS++ S ++ + + + + LTTP I + K + + Sbjct: 100 GVTGTNGKSTITSIIKDVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAILIHKTMKDMV 159 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ V++E SSHGL+ R+ + F+NL DH+D+H T + YF AK +LF L Sbjct: 160 DAGMQAVALEVSSHGLELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-L 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ A++ ADDAY ++ + + + T+ +G+ Sbjct: 219 KKDGVAVLNADDAYVDQLADATDARVVTYGI--DHHASYQAENIRIEKTGSRFTLVHDGE 276 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ + L + +YN L A GI A L +L ++ + GR E + + Sbjct: 277 HYEVVTNLVALYNIYNLLGAVAAMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQL-FNV 335 Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT + +E + + + IT II VFG G RD KR + G+IA D I+T Sbjct: 336 IVDFAHTPDGMEKVFEYAKDITEEGHSIIAVFGSAGKRDTKKRKVFGEIASRYCDSIILT 395 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+PR EDP +I EI GI I +R AIR AIE N +D +++ GKG E Sbjct: 396 EDDPRDEDPREIANEIKSGISDTNNIFIEDRYAAIRQAIESANMKDTVLILGKGDEVFMY 455 Query: 475 VTNGEKKMSVDCDIIREILG 494 G + D ++ R + Sbjct: 456 REFGREPWMGDHNVARHCIR 475 >gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] Length = 494 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 213/477 (44%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++++++DSR + G IFVA G D H F I QG +VV+ L+ Sbjct: 20 DKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELEG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++V +T + SL A L+ VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --EVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEFSHYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + +S D+ P G F + N + A Sbjct: 253 PYEVFTYGIDNEAQFM--AKNINESLQGVEFDLSTPFGDYRVKSPYVGRFNISNIMAAII 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G ++ + L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGASMEEIINAVTSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHDN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AIE+ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFDDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] Length = 482 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 182/511 (35%), Positives = 264/511 (51%), Gaps = 50/511 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + +P+ + + + D R + G +F A G + +G FI Sbjct: 1 MKLGAIL---------DAAGYPVAAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFI 51 Query: 61 --------------PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106 P+A+ +GA + + + + P+ Sbjct: 52 ADAVKAGAVAVVARPEAVVEGAVHV-ADAEPRRAFAALAAQFFQPV-------------- 96 Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTP 165 PE ++AVTGT+GK+S +QI + +G S+ IG T + + LTTP Sbjct: 97 -------PETVVAVTGTNGKTSTVEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTP 149 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 + ++ L+ +GVTHV+ EASSHGL Q R +G+++IAG+FTNL RDH+DYH T + Sbjct: 150 DIVTFLSNMTGLAREGVTHVAYEASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMED 209 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 YF AKMRLF+ ++ A+++ DD +S ++ G R+LSVG QG+ I L Sbjct: 210 YFAAKMRLFDHVVDDGGVAVVWMDDEWSGRAVEHVRRRGLRLLSVGEQGETIRLLARTPT 269 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q + ++ +G PL G +Q NALV+AGL IA GID+ V + L +L V GR Sbjct: 270 QLGQVLEVAFDGARRKISLPLIGAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGR 329 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E N G +YVDYAHT +++E + +R GR+I VFG GGDRD+GKRP MG+ Sbjct: 330 LERAAINRAGAPVYVDYAHTPDAIEAAIAALRPHVKGRLITVFGAGGDRDEGKRPEMGRA 389 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 A +D+ IVTDDNPR EDP IRA I+ G E G+R AI AI + D+++V Sbjct: 390 ACAGSDLVIVTDDNPRGEDPAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLV 449 Query: 465 AGKGHETVHIVTNG---EKKMSVDCDIIREI 492 AGKGHE I+ G D + RE Sbjct: 450 AGKGHEQGQIIGRGDAMRVLPFDDVQVAREC 480 >gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] Length = 494 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 129/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++++++DSR + G IFVA G D H F I QG +VV+ L+ Sbjct: 20 DINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELEG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + SL A L+ VTGT+GK+S+A+ + I ++ SS Sbjct: 75 --DVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKSS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGYLANVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + +S D+ P G F + N + A Sbjct: 253 PYEVFTYGIDNEAQFM--AKNINESLQGVEFDLSTPFGDYHVKSPYVGRFNISNIMAAII 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G ++ + L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGATMEEIINAVTSLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMNKLIDAVQPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHDN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFDDRAEGIRHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] Length = 506 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 137/502 (27%), Positives = 212/502 (42%), Gaps = 22/502 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 P + +++ F + + +S+ DSR + +F A G+ DG F+ +A QGA Sbjct: 7 PRTLQEVAAFLEEDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGA 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 AI+ P+L + FAS Y + + +TGT+GK Sbjct: 67 AAIICDYDKD-PSAEQLKDVTIPLLHLKKGMSV-GEFASWFYFSPSSKLRLIGITGTNGK 124 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 S+V + Q G + + TT S I L KAL+ +G + Sbjct: 125 STVTQLIAQYLALFNRKCAVFGTLGYGFLPNLKQSSNTTLSAIALQKALAEAVKEGADYA 184 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SS G+ + R+DG G+FTNL RDH+DYH+T + Y AK + P Sbjct: 185 ALEVSSIGVCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDHLCLN 244 Query: 246 IYADD-------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + + +++ + H+ ++ I Sbjct: 245 VDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSFG 304 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D L G F N L A + ++ +L+ +L + GR E R+ Sbjct: 305 KGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRME-CFYKEGKPRM 363 Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT + +E LK R+ T G ++ V GCGGDRD+GKRP+M A AD I T Sbjct: 364 IVDYAHTPDGVESALKAARSHTPGGKVWCVLGCGGDRDKGKRPMMAIKACVYADKVIFTS 423 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP +I ++ G+ + R +AI A + D +VVAGKGHE Sbjct: 424 DNPRTEDPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVVVAGKGHEDYQ 483 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ K D + + +L L Sbjct: 484 IIG-KVKHHYSDREFVMSLLDL 504 >gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] Length = 494 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 209/467 (44%), Gaps = 19/467 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++++++DSR + G +FVA G D H F + QG +VV+ L+ Sbjct: 20 DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N +VV +T + SL A LY VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + F P G F + N + A Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G + ++ + +L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHEN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +IE +R E IR AI++ D +V+A KG E I+ K D Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475 >gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 518 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 236/497 (47%), Gaps = 18/497 (3%) Query: 7 IYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 I F E ++ L + + ++ EV DSR G +FV + G+ D H F+ + I Sbjct: 21 IMAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVI 80 Query: 65 AQGAEAIVVSSAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 A+G EAIVV S L I ++ V ++R+ L+ ++ +G ++AVT Sbjct: 81 AEGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVT 140 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQ 180 GT GK++ A ++ I + +G S IG T + + + TTP L ++ + Sbjct: 141 GTKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADR 200 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G +V +EASS G +R D I G FTN+ DHI + + + ++ + + Sbjct: 201 GCGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGP---NEHKDFEEYKYYKSRIFR 257 Query: 241 ESPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +S + D+ E + C + ++ V + + Sbjct: 258 QSRVGLINRDSPYAEELIAGAKCRMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQVIGMA 317 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D LPG++ VYNA+ A +C IGI ++ +L+ L L V GR E N + Sbjct: 318 KLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKALR-LIRVNGRMELAFKNDT-MSV 375 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH + +E +L+ +R R++VVFGCGG+R + +R MG+ A LAD +++T D Sbjct: 376 IVDYAHNAMGMENLLETLREYHPKRLVVVFGCGGNRSKERRYGMGETAARLADFSVLTAD 435 Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 N R E E I ++I + + E +R EAI A++ K D++ V GKGHE + Sbjct: 436 NSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDIIAVIGKGHEDYNE 495 Query: 475 VTNGEKKMSVDCDIIRE 491 V NG + +D ++I E Sbjct: 496 V-NGARTHFLDREVIEE 511 >gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. FW1012B] gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. FW1012B] Length = 487 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 149/466 (31%), Positives = 236/466 (50%), Gaps = 16/466 (3%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 S + G +FVA+ G DG FIP A+A+GA +V L + ++V + Sbjct: 28 SAKVLPGGVFVAVAGPVADGERFIPDALARGAAHVVAGPGTVLPAGATAR-----LVVAE 82 Query: 97 NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153 N + L A+ YG + + A+TGT+GK+++ ++++ +G +G + Sbjct: 83 NPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGRKVGVLGTVAYRW 142 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 +++ LTTP + + + L+ + + G +EASSH + Q RL G+ AG FTNL Sbjct: 143 PGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRLAGLAFAAGIFTNLT 202 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 +DH+DYH+ ++YF AK LF L A++ DD + + +++ A L+ Sbjct: 203 QDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEEFPQALGYGLTAPPA 262 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G L H ++ + V D P+PG N L A G + +G+ +A Sbjct: 263 GFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALVLGLPAAA 322 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + H PGR E + N R ++VDYAHT ++LE +L R T G++ VFGCG Sbjct: 323 FAALADC-HGAPGRLERIA-NPRDLTVFVDYAHTPDALENVLGAAREFTKGKLFAVFGCG 380 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEA 448 GDRD+ KRP+M AD+A++T DNPR EDP I A+ + G + + +R A Sbjct: 381 GDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLAIMADARPGLAGARRAVAEPDRRRA 440 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I A+ + +DVLV+AGKGHET + + K D ++RE+ G Sbjct: 441 IGLALSEMGPEDVLVIAGKGHETYQQIGD-VKHPFSDAAVVRELTG 485 >gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia floridanus] gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia floridanus] Length = 499 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 151/504 (29%), Positives = 224/504 (44%), Gaps = 23/504 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +LI + ++ + DSR+I G +F+AI G DG L I Sbjct: 6 QLHELIVPWISGINVKIPYL---------TGLELDSRNINFGNLFIAIQGYNTDGRLHID 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPE--N 116 AI GA AI+ S F I +N PI+ + K +S A R Y Sbjct: 57 DAINNGAVAILSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLK 116 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175 ++ VTGT+GK+++ + G S +G S + TT S I K L Sbjct: 117 LIGVTGTNGKTTITHLLTNWTSLLGERSAVMGTLGNGVLSDINPSCCTTCSAIETQKILK 176 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 GVT V++E SSHGLDQ+R+D + F+N+ DH+DYH Y AK RLF Sbjct: 177 QFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLFN 236 Query: 236 ELLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 EL K + + + L + G++I L K ++ Sbjct: 237 ELRVKNYVINVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIVF 296 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + L GE V N L+A G + +G +L KL+ V GR E + + Sbjct: 297 KSSWGNGFIHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCGRLEVLSCLN 356 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++L+ IL + + + GR+ +FGCGG+RD+ KR +MG IA +D Sbjct: 357 HPT-VIVDYAHTPDALKKILIFAKHLCNKGRLWCIFGCGGNRDRSKRSLMGVIANRYSDY 415 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T+DNPR EDP+ I +II I +R+ AI + D +++ GKGH Sbjct: 416 VIITNDNPRVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVVSKACSDDFVLILGKGH 475 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + D DI++ I Sbjct: 476 EKYQNIGLNYIS-HSDQDIVKSIF 498 >gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cupriavidus metallidurans CH34] gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Cupriavidus metallidurans CH34] Length = 515 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 156/484 (32%), Positives = 221/484 (45%), Gaps = 28/484 (5%) Query: 33 VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ D+R +Q G +F A V GN DG I +AIA GA AIV + +F+ Sbjct: 32 LTGDTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIVYEAD----NFAWPHDD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + + A+ YG N I VTGT+GK+S + ++ ++ Q +G Sbjct: 88 RVPHLAVSHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCAT 147 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + A TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 148 IGTLGSGFPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGTGFA 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TNL +DH+DYH T Y AK RLF K + + Sbjct: 208 VAVLTNLTQDHLDYHGTMAEYEAAKARLFAWDGLKAAVINRDDGMGQRLLASNAVAVSAP 267 Query: 266 RVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +V+ G +G+++ V A + D P+ G F V N L Sbjct: 268 QVIEYGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGAFNVSNLL 327 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G +A G+ ++ L +L V GR E G VDYAHT ++L L + Sbjct: 328 AVLGAALAQGVTWDAAIDALRRLTPVDGRMELFG-GHDAPLAVVDYAHTPDALVQTLTAL 386 Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + G++ VFGCGGDRD KRP+MG +A LAD ++T DNPRSEDP +I I Sbjct: 387 RPVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLADEVVLTSDNPRSEDPREILEAIA 446 Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ +R AI AI+ DV++VAGKGHE + G K+ D + +R Sbjct: 447 DGMSDRARAALIEDRAAAILYAIKHAAPADVVLVAGKGHEATQEIQ-GRKRPFSDREHVR 505 Query: 491 EILG 494 LG Sbjct: 506 LTLG 509 >gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] Length = 490 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 149/506 (29%), Positives = 229/506 (45%), Gaps = 30/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + +I V ++ +Q G IF+ G K G F+ Sbjct: 1 MQLAELLKDWPCSVTGGSIRT-------EITGVEDYAQAVQPGDIFIVRKGKKTSGSRFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+A+GA AIV + SL I P + V NT FLS +++L E ++ Sbjct: 54 KEALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174 A+TGT+GK++V+ FV Q+ + IG + + +LTT L L Sbjct: 110 AITGTNGKTTVSHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPIL 169 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +GVTHV +EASS GL QHRLD + G F NL DH++ H +AY AK R Sbjct: 170 KQCVQKGVTHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR-- 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L S ++ D + H++ V K + + Sbjct: 228 ---LADLSKKLVLNGDDNFCRSVGIYDKKKSCSFGFDNHNDL-HIQIVSESVGKTVLCLQ 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + P G++ V NA+ + +G+ ++ H+ L + GR E + N Sbjct: 284 TSASEHIVEIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKI-ENPL 342 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +YVDYAHT+ +L+ +L+ S I +VF CGG+RD+ KR MG +A AD+ Sbjct: 343 GIDVYVDYAHTAEALQAVLQTFD--HSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIY 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T DNPR EDP I II G + +R AI A+ K D+++VAGKGHE Sbjct: 401 LTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLVAGKGHEQ 460 Query: 472 VHIVTNGEKKMSVDCDIIREILGLIL 497 + N +K D +++ ++ Sbjct: 461 TQQIKN-QKFPFSDQQCVKDYFASLI 485 >gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] Length = 534 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 147/486 (30%), Positives = 227/486 (46%), Gaps = 24/486 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + V+ DSR ++ G ++VA+ G + G F QA GA A++ A + Sbjct: 54 VVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTDPAG----YDRAAA 109 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ V + R L A+ +YG + + TGTSGK++V+ V+ + +G+ + Sbjct: 110 TRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESGLREAGMRTG 169 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G D+ LTTP L + + + V ++E SSH L R+ G++ Sbjct: 170 LVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGRVAGVRY 229 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H YF K RLF A++ DD++ + ++ R G Sbjct: 230 DVAVFTNLSQDHLDFHADLHDYFETKARLFTP--EFAKVAVVNRDDSFGRTLIDRITEQG 287 Query: 265 CRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAA 319 ++ G + V + + G LPG F V NA+ A Sbjct: 288 AIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFNVANAMAAI 347 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 I G+ + + VPGR E V + VDY+H ++E +L ++R I Sbjct: 348 VALIEAGVPLPTAVAGVAAARGVPGRMERV-DEGQDFTAIVDYSHKPGAIEAVLTSLRPI 406 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 T GR+ +V GCGGDRD+GKRP+MG+ A LAD I+TDDNPRSEDP I ++ G+ Sbjct: 407 TEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIITSMLEGVAKV 466 Query: 440 --------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +R AI A+ DV+VVAGKGHE V + D D++RE Sbjct: 467 PVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKGHERGQHVGD-RILPFDDRDVLRE 525 Query: 492 ILGLIL 497 + L Sbjct: 526 AIRARL 531 >gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus epidermidis FRI909] Length = 494 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++++++DSR + G +FVA G D H F + QG +VV+ L+ Sbjct: 20 DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N +VV +T + SL A LY VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + F P G F + N + A Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYVGRFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G + ++ + +L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHEN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +IE +R E IR AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] Length = 464 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 42/498 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + L+ + + +I + +++ Q G +F+A+ G +G +I Sbjct: 1 MNISQLLINIIQTEV-----------DIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119 QAI +G AI+V S I P + V+N +L A+ Y + +++ Sbjct: 50 NQAIDKGCVAILVDSK--------EIECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIG 101 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTGT+GK+SV + Q+ ++ G+ + IG Q TTP + L + L + Sbjct: 102 VTGTNGKTSVTYLISQLLEKLGVKNGLIGTLGIT-HNKQLYFNTTPDILTLYRVLHHYYQ 160 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 Q + + +E SSH L Q+R+ G+ + FTNL +DH+DYH T Y K RLF L Sbjct: 161 QDIHYAVIEISSHALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFT--LN 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ DD + K +K + S+ + Q V+ Sbjct: 219 CVKSVILNQDDHHYKHFLKVSKGKKQTSYSLNDFNSIKII----------QQGFLVQLDH 268 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F P GEF + N L A+G ++ + +L PGR + + Sbjct: 269 YVFEIPFLGEFNLLNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQ----INHYHAW 324 Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT N+LE + ++ +I +VFGCGG+RD+ KR MG+IA LAD I+T+D Sbjct: 325 IDYAHTPNALENAITTLQKHYPNFKIRIVFGCGGNRDRNKRSKMGRIASKLADSIILTND 384 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSE+P+ I +I++GI E +R AI TA+ L K + L++ GKGHET + Sbjct: 385 NPRSENPQTIINDILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITGKGHETTQQL 444 Query: 476 TNGEKKMSVDCDIIREIL 493 N + D I + + Sbjct: 445 FN-KIIYLNDLQIAQNSI 461 >gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 526 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 143/518 (27%), Positives = 221/518 (42%), Gaps = 48/518 (9%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I+ + + + ++ +++ + G +F + G G F A A++ Sbjct: 10 ISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFADS---SSAAAVLTD 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 R + PI+VVD+ R L +S +Y ++ +TGT+GK++ + Sbjct: 67 HDG----VEKVTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKTTTSYM 122 Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V+ G+S+ IG T T + + LTTP L + + +GVTHV +E SS Sbjct: 123 VEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVVMEVSS 182 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H + R+ G FTNL +DH+D+H T + YF K RLF+E P + + D Sbjct: 183 HAIALGRVLGTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSVVCIDD 242 Query: 252 YSKEVMKRAHNAGC--------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + + + V + + Sbjct: 243 AWGQRLATMLPHPFTVSTEAASEHDASLQPDVWAGPSSVMDNGVQTAELYGFGANEMTLH 302 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+PG F V NA++A GL + G+ + +E L + V PGR E + VDYA Sbjct: 303 IPMPGRFNVANAMLAMGLLVKTGMKAEDAIEGLSTVTV-PGRLERIDCGQ-DFMAVVDYA 360 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H ++ +L +R GRI +V G GGDRD KRPIMG+ A +D+ IVTDDNPRSE Sbjct: 361 HKPGAIAAVLDTLRAHVRGRIAIVVGAGGDRDHSKRPIMGREAALRSDLVIVTDDNPRSE 420 Query: 424 DPEKIRAEIIHGIPGF---------------------------IEKGNRIEAIRTAIEML 456 DP IR +++ G E G+R EAIR AI+ Sbjct: 421 DPASIRQQVVAGAKEVADHVDVDRADEPRNKVKTEGSEHRPTIREIGDRREAIRAAIQWT 480 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 D ++VAGKGHET ++ + D R + Sbjct: 481 QPGDAVIVAGKGHETGQLIGD-TTHPFDDRVETRRSIE 517 >gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 555 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 149/524 (28%), Positives = 237/524 (45%), Gaps = 39/524 (7%) Query: 3 LQDLIYKDFPELINQLSIF-PMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 L L+ D L L P + +R++ ++ DSR + G ++ A+ G + G F Sbjct: 14 LAALLGPDASLLRPDLGADRPPEVPDREVHVRGITHDSRQVGPGDLYAALPGTRAHGADF 73 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 QA GA A++ + + + P++VV + R L AS ++ +++ Sbjct: 74 AGQAAEAGAAAVLTDGDGAER----AAATGLPVIVVPDVRAVLGTAASWVFKDPAQDLLL 129 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 + TGTSGK++V V+ + +G+ + +G + LTTP L + Sbjct: 130 IGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVEMRVGDERVVSSLTTPEATDLHGLFAL 189 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV+ ++E SSH L R+ G + FTNL +DH+D+H + YF+AK RLF Sbjct: 190 MRERGVSAAAMEVSSHALALSRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFTP 249 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCA 284 A++ ADD + + ++ G V Sbjct: 250 --EYCDIAVVNADDRFGRALVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRL 307 Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 I G + + LPG F V NA+ A + G+ + + VP Sbjct: 308 GAMGSAFRIVGPGGMEANASVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVP 367 Query: 344 GRFEFV-----GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 GR E V + VDY+H ++E +L +R T G + +V GCGGDRD+ K Sbjct: 368 GRMEPVVANAVPHAFQDFTALVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAK 427 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIR 450 RP+MG+ A L+D ++T+DNPR+EDP I A ++ G+ E+ +R EAIR Sbjct: 428 RPLMGEAAARLSDQLVITNDNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIR 487 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A+E DV+VVAGKGHET V GE D +++R + Sbjct: 488 LAVERARPGDVVVVAGKGHETGQYVK-GEVLPFDDREVLRAAIE 530 >gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32] gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32] Length = 508 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 160/518 (30%), Positives = 251/518 (48%), Gaps = 45/518 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + + + I + DSR +Q G +F A+ G DG+ FI Sbjct: 1 MRLSQLVKSVAV-------LDMVGDVDPDITGLFYDSRKVQPGGLFFALKGVASDGYAFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ + A ++ ++ + V + R +SL A+ Y ++ Sbjct: 54 EVAVK--------AGAVAVVIEDDRTPADIAWVRVADGRLAMSLMAAAFYANPAAGLPVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ I ++ GL + +G + + TTP + L + L L Sbjct: 106 GITGTNGKTTTTFLLESIFEKGGLPAAVLGTVNYRFGDLSIPAPNTTPESVDLQQTLRKL 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +E SSH L Q R+DG G FTNL RDH+DYH ++Y +K RLF EL Sbjct: 166 VDAGAKGIVMEVSSHALQQRRIDGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSEL 225 Query: 238 L-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L E A+I DD Y + + + A + I+ + V + T Sbjct: 226 LVPDEKKPERHAVINTDDEYGRRIAQAAACPVVTYGI--EKSADINAENVEFSVSGISCT 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + L G F +YN + AAG +A+G+ + E LE VPGR E V N Sbjct: 284 LATPKGRIELRSMLVGRFNLYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGRLERV-EN 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + G + VDYAHT ++LE +L + + GRII +FGCGGDRD+GKRPIMG+IA +D+ Sbjct: 343 ALGVTVLVDYAHTGDALENVLLTMTELKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDL 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI------------------PGFIEKGNRIEAIRTAIE 454 +I+T DNPR+E+P +I A++ GI GF+ R +AIR A++ Sbjct: 403 SIITSDNPRTENPAEIMAQVREGIVRLGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVK 462 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++++AGKGHE I+ EK D ++ + Sbjct: 463 AARPGDIVLLAGKGHEDYQIIG-KEKFHFDDREVAAQA 499 >gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] Length = 848 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 218/471 (46%), Gaps = 15/471 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR I+AG FVA G DG +I A+ GA + + + + P Sbjct: 60 LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRP---EWDVPN 116 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + R+ + A+ YG +I+ VTGT+GK+SV ++ Q Sbjct: 117 QAIPDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIV 176 Query: 151 STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+ + + TTP P+ L L G V++E SSHGLDQ+R++G Sbjct: 177 GTVGNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRT 236 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH++ + Y K RLF + + A +KR+ ++ Sbjct: 237 AVFTNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNAVINTDDAFGQQLCAELKRSESSLH 296 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + I + + A + ++ L G F N A G A Sbjct: 297 VYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAG 356 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383 G D L L + GR + + VDYAHT ++LE L +R I G Sbjct: 357 GYDFQAALNALSHIRPATGRMD-CIIGEGKPLVVVDYAHTPDALEKALATLREIKQPAGC 415 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEK 442 + VFGCGGDRD+GKRP+MG++A LAD +VT DNPR+EDP+ I A+I+ +P + + Sbjct: 416 LWCVFGCGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPHPALVE 475 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI AI D++++AGKGHET + +G + D ++ + L Sbjct: 476 ADRKAAIEQAIAQAAPNDIILIAGKGHETYQEI-HGVRTHFSDFEVAEQAL 525 >gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] Length = 514 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 236/476 (49%), Gaps = 20/476 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR +Q G ++VA+ G G F QA+A GA AI+ +A + + Sbjct: 32 VSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALAAGASAILTDEEG----RAAAVATG 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LVV + R+ L ++ +YG+ ++ VTGTSGKS+ ++ + +G + I Sbjct: 88 LPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKSTTTFLLEAGLRAAGHKAGLI 147 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +LTTP L + + GVT ++E SSH L R+D + Sbjct: 148 GGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGRVDAVFYDV 207 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H+ YF K RLF + + DDA+ +E++ + Sbjct: 208 ALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAGVVN--IDDAHGRELLGLSKIPMTT 265 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G V + + G + D LPG F V NAL A + Sbjct: 266 FSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVANALGAIVSLVEA 325 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + + L VPGR E V + VDY+H ++E +L+++R +T+GR+ Sbjct: 326 GVPLRAAVAGVGTLAGVPGRMERVPGGE-DFQAIVDYSHKPGAVESVLRSLREVTTGRLT 384 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------P 437 VV GCGGDRD+GKRP+MG+ A LAD+AI+T DNPRSEDP +I AE+++G Sbjct: 385 VVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAEMMNGALGVSHDERA 444 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I + +R AI AI DV+VVAGKGHE V + E D ++ + + Sbjct: 445 HVIIEPDRAAAIDLAISRAGFGDVVVVAGKGHEQGQYVGD-EVLPFDDRQVVADAI 499 >gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] Length = 488 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 199/492 (40%), Positives = 277/492 (56%), Gaps = 18/492 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + FPE S P + +++DSR + G +FVA+ G + DG LF Q Sbjct: 7 LGALFPEAAGAASALP-------VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQ---- 55 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 A A + + A + L V + R+ L+L A+RL+ P ++AVTGTSGK Sbjct: 56 -AAAAGAVAMVAEGPRPADLPQAVAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHV 185 SSVA FV+QI R G S +G ++ LTTP P+ L + L L+ G+T + Sbjct: 115 SSVADFVRQILARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDL 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++EASSHG++Q RLDG++L A +FTNLG DH+DYH+T +AY AK+RLFE+LLP+ + AI Sbjct: 175 AMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAI 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD + + +++ G G+ + L V Q++T++ +G+ P Sbjct: 235 VNADGPMADRAVAAIRARSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLP 294 Query: 306 LPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G +QV NALVAA L + A V+ L L VPGR E V RG VDY Sbjct: 295 LVGSYQVENALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLERVA-THRGALCVVDY 353 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +L +L+ +R +GR++ V GCGGDRD+ KRP+MG+IA+ AD IVTDDNPRS Sbjct: 354 AHKPEALAGVLQALRPFATGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRS 413 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 E+P IRAEI+ PG E G+R EAIR A+ L DVLVVAGKGHET I+ + Sbjct: 414 EEPAAIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKGHETGQIIGD-RTLP 472 Query: 483 SVDCDIIREILG 494 D D + + Sbjct: 473 FSDRDAVLSAIE 484 >gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] Length = 513 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 148/501 (29%), Positives = 223/501 (44%), Gaps = 30/501 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +L+ + +I V ++ ++ G IF+ G K G F+ Sbjct: 26 QLAELLKDWPCSVTGGSIRT-------EITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVK 78 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 +A+A+GA AIV + SL I P + V NT FLS +++L E +++A Sbjct: 79 EALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVIA 134 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALS 175 +TGT+GK++V+ FV Q+ + IG LTT L L Sbjct: 135 ITGTNGKTTVSHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPILK 194 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +GV+HV +EASS GL QHRLD + G F NL DH++ H +AY AK R Sbjct: 195 QCVRKGVSHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR--- 251 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L S ++ D + H++ V K + + Sbjct: 252 --LADLSKKLVLNGDDNFCRSVGIYDKKKSCSFGFDNHNDL-HIQIVSETVGKTVLCLQT 308 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + P G++ V N + A +G ++EH+ L + GR E + N G Sbjct: 309 SASEHIIEIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKI-DNPVG 367 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +YVDYAHT+ +L+ +L+ S I +VF CGG+RD+ KR MG +A AD+ + Sbjct: 368 IDVYVDYAHTAEALQAVLQTFDR--SKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYL 425 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR EDP I II G + +R AI A+ K D+++VAGKGHE Sbjct: 426 TTDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQT 485 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + N +K D I++ Sbjct: 486 QQIKN-QKFPFSDQQCIKDYF 505 >gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia sp. wRi] gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia sp. wRi] Length = 475 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 174/498 (34%), Positives = 268/498 (53%), Gaps = 35/498 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L++ + +I V+ + + I+ G++FV + ++ D ++I Sbjct: 1 MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46 Query: 61 PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117 Q ++ GA+AI+ S +L R + N ++ S SR Y K P+ + Sbjct: 47 DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174 AVTGT+GK+SV F +QI Q SG ++ IG T N LTTP L Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L V H+ +E+SSHG+DQ+R+ G+KL A +FTN +DH+DYH++ Y K RLF Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ AI+ AD ++K A +V++ G +G I L + + N Q +T+ Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ + ++ FP+ G+FQ YN L A G+ + +EKL PGR E V Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ KR MGKIA AD I Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473 +TDDN R EDP KIR +I+ P +E G R EAI +++ N+ +L+VAGKG+E Sbjct: 394 ITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQ 453 Query: 474 IVTNGEKKMSVDCDIIRE 491 I+ N D ++I+ Sbjct: 454 IIGNQT-FEFSDVEVIKN 470 >gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] Length = 496 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 150/481 (31%), Positives = 227/481 (47%), Gaps = 18/481 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER I +S+DSR G F+A G DG ++ A+A GA A +V A + A Sbjct: 15 ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGA----QAYG 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ + + A+ +G E + A+TGT+GK+S A ++ Q R G Sbjct: 71 FNDDRVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRLGRKC 130 Query: 145 FQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G A N LTTP P+ L + L + +G ++EASS GL++ RLDG + Sbjct: 131 GIVGTLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACALEASSIGLEEGRLDGTR 190 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTN +DH+DYH + Y+ AK LF P AII DD+ E+ Sbjct: 191 IQIAVFTNFTQDHLDYHASMPDYWRAKQMLFNW--PGLRAAIINVDDSRGLELSAALAGT 248 Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V ++ G + +C + + G+ P+ G + V N L Sbjct: 249 SLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVSNLLGVMASL 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+ + A + L VPGR E + + +DYAHT ++LE +L + + G Sbjct: 309 RAMDVPLADAVAACADLLPVPGRTETLAVPGLPL-VVIDYAHTPDALEKVLTALNPVAQG 367 Query: 383 R---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 R + VFGCGGDRD GKRP+M A AD ++T DNPRSEDP I +++ G+ Sbjct: 368 RGGRLWCVFGCGGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIGQMLKGLSRP 427 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R AI A+++ QDV+++AGKGHE + G K D D + IL + Sbjct: 428 QVAHVQEDRRAAIAHALQLAQPQDVVLLAGKGHENYQEIK-GVKFAFSDRDQAQAILDAL 486 Query: 497 L 497 + Sbjct: 487 V 487 >gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] Length = 515 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 152/502 (30%), Positives = 232/502 (46%), Gaps = 24/502 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +D L++ + + + V+ DSR ++ G ++ A+ G++ G F Q GA Sbjct: 15 RDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADAGA 74 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126 A++ + + +A + + P++VV+ R L A+R+YG ++ +TGT+GK Sbjct: 75 AAVLTDADGVERLRAAGV--DLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A V G + IG T + TTP L L+ + + Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L QHR+DG+ FTNL +DH+D+H + YF+AK +LF Sbjct: 193 VMEVSSHALSQHRVDGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLFTPERSTRGLIC 252 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + L+ + V A + + G + D Sbjct: 253 ---VDDIWGRRLAEECGIPVTTLTTIEGQTADWVVTVDATEPA-RFALRGTGIELDLRSA 308 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYV 360 LPG+F V N +AA + +G D+ V + VPGR E V G V Sbjct: 309 LPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVV 368 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +++E L +R T+GR++VV G GGDRD+GKR MG+ A LAD+ +VTDDNP Sbjct: 369 DYAHTPDAVEAALAALRPTTTGRLVVVLGAGGDRDRGKRHGMGRAAAGLADVVVVTDDNP 428 Query: 421 RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNK---QDVLVVAGKGHET 471 RSEDP +IR ++ G +E G+R +AIR + + + VL V GKGHET Sbjct: 429 RSEDPAQIRTAVVEGARSIDTTALLVEVGDRRKAIREGVRLAREGGSGSVLAVVGKGHET 488 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + N D D +R L Sbjct: 489 GQEI-NEVVHPFDDRDELRAAL 509 >gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 512 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 144/510 (28%), Positives = 233/510 (45%), Gaps = 33/510 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR A F+A+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGT 61 Query: 69 EAIVVSS--AYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124 + I+ S S+ P I V+N ++ LS A Y K P+NI+ +TGT+ Sbjct: 62 KLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S++S++ Q+ + G S +G I Q++ TT + L + +SY + Sbjct: 122 GKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYYKNYQN- 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH LDQ R +G+ F+NL DH+DYH+T YF AK +LF+ Sbjct: 181 -LVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF--RSLKK 237 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-------------------QGKFIHLKKVCA 284 A+I DD Y +++ + + + R + I+++ Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSI 297 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + + + K L + + +LE++ KL V G Sbjct: 298 ENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKG 357 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + G +I +DYAHT ++LE L+ + + +FGCGG+RD KRPIM + Sbjct: 358 RMEVIA-LVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMAQ 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 IA + A ++T+DN R E E I +I G +R EAI+ IE DV Sbjct: 417 IAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTIENSKANDV 476 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +++AGKGHE NG K+ + D+I Sbjct: 477 ILLAGKGHECYLD-KNGIKEYFDERDVINR 505 >gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf. saccharolyticum K10] Length = 487 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 129/496 (26%), Positives = 206/496 (41%), Gaps = 28/496 (5%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D + + EL+ P + +V DSR +FV + G D H FIP + Sbjct: 4 DWLKELKYELVQGELDVPAE-------DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVL 56 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 G + +VV S I + ++ V+N R L+L ++ +G ++ + T Sbjct: 57 KAGTKILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTG 110 Query: 125 GKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K + + G IG I + TTP L + + G Sbjct: 111 TKGKTTTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAG 170 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++ +E SS HR+DG+ G F N+ DHI + + +++ L K Sbjct: 171 CEYMVMEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGP---GEHADFEEYLHYKKQLLKN 227 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I +D E + R A S+ F + + +++ Sbjct: 228 CKTAIVNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYE 287 Query: 302 F--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +PG F NAL + LC + + A V LE L + GR E V S + Sbjct: 288 MEVKVNVPGRFNAANALASVALCSFLDLPKAKVAHGLEHLKID-GRMEIV-YKSSKMTVI 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH + S+E +LK +R R++ VFGCGG+R + +R MG+I +LAD I+T+DN Sbjct: 346 VDYAHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDN 405 Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R ED I +I G+ +IE +R AI AI + D++ + GKGHE + Sbjct: 406 SRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEI 465 Query: 476 TNGEKKMSVDCDIIRE 491 G + +D ++ E Sbjct: 466 -RGVRYPFLDRQVVLE 480 >gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU121] Length = 494 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 216/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++++ ++++DSR + G IFVA G D H F + QG IVV+ + Sbjct: 20 DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQD-------L 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + SL A L+ ++ TGT+GK+S+A+ + I ++ +S Sbjct: 73 NGDVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S+ + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 V + + P G+F + N + A Sbjct: 253 PYEVFTYGIDN--DAQFRAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G ++E ++ L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGATFEEIIEAVKSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHSN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E I+ AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis RP62A] gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis RP62A] gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU028] gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU045] Length = 494 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++++++DSR + G +FVA G D H F + QG +VV+ L+ Sbjct: 20 DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N +VV +T + SL A LY VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + F P G F + N + A Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G + ++ + +L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHNN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +IE +R E IR AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] Length = 487 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 144/496 (29%), Positives = 215/496 (43%), Gaps = 23/496 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ F + P DSR + AG +F+A+ G K DG ++ Sbjct: 2 MLLKDLLAPWFHYAGTESVHAP-----------VIDSRQLTAGGLFIAVPGYKTDGRAYL 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118 A A+GA A +V + + + + + +S A + Y + ++ Sbjct: 51 DAAFAKGAAAALVHTDDPDEHGKVSYEPGL-CIAFFQLNRQVSAVARQYYALTRGKLRVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SV+ + Q+ + G + +G QD TT + + L Sbjct: 110 GVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDF 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R++ + FTNL RDH+DYH Y AK RLF Sbjct: 170 EHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAF- 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + D E +G+ + H + G Sbjct: 229 --GSLSARVINLDDKVGEQWFDGMGCATGFSCLGHAKADWRFENAHFHHAGFSANLVWPG 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L G F + N L A +G ++ KL VPGR E G Sbjct: 287 GQKPLECRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRME-CFPRKDGVS 345 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT +++E LK R G + +VFGCGGDRD+GKRP+M + A AD ++T Sbjct: 346 LVVDYAHTPDAIEQALKAARHHCEGALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTS 405 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DN RSEDP I ++ G+ + +R+ AIR A+ M D++++AGKGHET Sbjct: 406 DNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQE 465 Query: 475 VTNGEKKMSVDCDIIR 490 + G K + + R Sbjct: 466 IA-GVKHEYDERALAR 480 >gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. Mississippi] Length = 472 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +++DSR ++ G+IFV + G F+P A+ GA+ IV +A L ++ Sbjct: 15 SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66 Query: 91 PILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I++ AS +G PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 67 QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 I TTP + L K LS L V ++ +EASSHG+ Q RL G+K Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL DH+DYH + + Y+ K +LF E+L E A++ AD E+ + A Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRNII 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V + + + V + +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKM-CGEVIYDGAFPVLGKFQISNLLCALAVVAASG 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385 V +++L GR E G RI +DYAHTS++L+ L +++ + + Sbjct: 306 SGHRDV--PIDRLAPPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 +VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418 Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI A+ + + VL++AGKGHET + G+ D +R L + Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469 >gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] Length = 515 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 150/503 (29%), Positives = 225/503 (44%), Gaps = 29/503 (5%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +QL P R ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELADQLG-LPAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + + P LVVD+ R + A +YG + + +TGTSGK++ Sbjct: 76 VLTDPSGAER----VAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRS--------GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 A V+ + + G IG + TTP L + + Sbjct: 132 TAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRE 191 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G V++E SSH L R+DG FTNL +H+++H + YF AK +LF Sbjct: 192 RGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFTPERS 251 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGK 298 + DD Y + + K A + G+ + V T I E + Sbjct: 252 RLGVVN--VDDEYGRRLAKEAGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PLPG F V N L A A G+D + + + VPGR E V Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLA 368 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD KR MG A LAD A++T D Sbjct: 369 VVDYAHKTDAVESVLRTLRRVTEGRVHVVLGCGGDRDITKRAPMGAAAARLADTAVLTSD 428 Query: 419 NPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSEDP I A ++ G +R AI A+ D ++VAGKGHE Sbjct: 429 NPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHE 488 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + G + D ++RE + Sbjct: 489 QGQDIA-GVVRPFDDRQVLREAI 510 >gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] Length = 487 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 128/496 (25%), Positives = 205/496 (41%), Gaps = 28/496 (5%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D + + EL+ P + +V DSR +FV + G D H FIP + Sbjct: 4 DWLKELKYELVQGELDVPAE-------DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVL 56 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 G + +VV S I + ++ V+N R L+L ++ +G ++ + T Sbjct: 57 KAGTKILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTG 110 Query: 125 GKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K + + G IG I + TTP L + + G Sbjct: 111 TKGKTTTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAG 170 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++ +E SS HR+DG+ G F N+ DHI + + +++ L K Sbjct: 171 CEYMVMEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGP---GEHADFEEYLHYKKQLLKN 227 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I +D E + R A S+ F + + +++ Sbjct: 228 CKTAIVNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYE 287 Query: 302 F--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +PG F NAL + LC + + V LE L + GR E V S + Sbjct: 288 MEVKVNVPGRFNAANALASVALCSFLDLPKPKVAHGLEHLKID-GRMEIV-YKSSKMTVI 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH + S+E +LK +R R++ VFGCGG+R + +R MG+I +LAD I+T+DN Sbjct: 346 VDYAHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDN 405 Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R ED I +I G+ +IE +R AI AI + D++ + GKGHE + Sbjct: 406 SRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEI 465 Query: 476 TNGEKKMSVDCDIIRE 491 G + +D ++ E Sbjct: 466 -RGVRYPFLDRQVVLE 480 >gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 513 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 140/511 (27%), Positives = 233/511 (45%), Gaps = 33/511 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR A F+A+ G+ DG+ +I +A+G Sbjct: 2 KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGT 61 Query: 69 EAIVVSS---AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124 + I+ S+ S + I V+N ++ LS A Y K P+NI+ +TGT+ Sbjct: 62 KLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S++S++ Q+ + S +G I Q++ TT + L + +S + Sbjct: 122 GKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQN- 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH LDQ R +G+ F+NL DH+DYH+T YF AK +LF+ Sbjct: 181 -LVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KNLKK 237 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-------------------QGKFIHLKKVCA 284 A+I DD Y +++ + + + R + I+++ Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + + + K L + + +LE++ KL V G Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSLAALDDSSTRDQLLENISKLKPVKG 357 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + G +I +DYAHT ++LE L+ + + +FGCGG+RD KRPIM + Sbjct: 358 RMEVIA-LVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMAQ 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 IA A+ +VT+DN R E E I +I G +R +AI+ IE DV Sbjct: 417 IAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIKYTIENSKANDV 476 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +++AGKGHE NG K+ + ++I + Sbjct: 477 ILLAGKGHECYLD-KNGIKEYFDEREVIAKY 506 >gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU144] Length = 494 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++++++DSR + G +FVA G D H F + QG +VV+ L+ Sbjct: 20 DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N +VV +T + SL A LY VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + F P G F + N + A Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G + ++ + +L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438 ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHNN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +IE +R E IR AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] Length = 532 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 231/481 (48%), Gaps = 24/481 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + +S DS+ I+ G +++A G G F P A+A GA A+V +A + Sbjct: 38 DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAA----MLD 93 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+LV ++ R ++ +YG+ + VTGT+GK++ + + +R+GL + Sbjct: 94 GLAVPVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKT 153 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I + TTP L L+ + V +++E SSH L R GI+ Sbjct: 154 GVIGTVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAGIR 213 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A +F NL +DH+D+H + YF AK +LF A++ DD + + V++R Sbjct: 214 FKAAAFLNLTQDHLDFHADFEDYFEAKAKLFTP--GYTERAVVDVDDEHGRRVVERCRAN 271 Query: 264 GCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAG 320 G +V + +G + + + T++ LPG+F V NAL A Sbjct: 272 GVQVHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIV 331 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379 L GID + + +H VPGR E + + VDYAHT +++ L +R + Sbjct: 332 LLAVTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRPVA 391 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR+ VV GCGGDRD+ KRP+MG A+ LAD A+ TDDNPR+E I A + G Sbjct: 392 ERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGAD 451 Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + +R EAIR A+ DVL+VAGKGHE + G KK D ++ Sbjct: 452 AELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKGHEQGQEIA-GVKKPFDDRVVL 510 Query: 490 R 490 R Sbjct: 511 R 511 >gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 484 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 147/502 (29%), Positives = 232/502 (46%), Gaps = 28/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ L+ + + F ++ I DSR+I+ F A G D H F Sbjct: 1 MKVSQLLDGLSIKGFDLDVDFETDVKDINI-----DSRNIKRKAPFFAFQGAAVDSHKFA 55 Query: 61 PQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A G +V P +VV++ RK L+ +GK E + Sbjct: 56 AEVYASGKVPFVVAEHKIE----------GVPTVVVEDGRKALARACRNFFGKPDEEMDS 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176 +AVTGT+GK++ + +I + +G S +G T TTP K L Sbjct: 106 IAVTGTNGKTTTTYIINEILKTAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRD 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G + +E SSH L QHR++G+ FTNL DH+DYH+T YF AK LF Sbjct: 166 AKDAGCDTLVMEVSSHALHQHRINGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILFTP 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + + + + ++K A +++ + + Sbjct: 226 EYSRVGVIGKDS--EFGERLLKEAEVDRVSYGITNKSEIT--AEEIWFGLSGLRAKFVYP 281 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G + N + A CI +GID+ + +E+L VPGR E S G Sbjct: 282 AGSIEMESSLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKF-EKSNGA 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I+VD+AHT ++L+ +L+ + + R+I VFGCGGDRD+ KRP M K A +D+ IVT Sbjct: 341 YIFVDFAHTDDALKNVLEALGSFKENRVITVFGCGGDRDRSKRPRMAKTAELDSDVVIVT 400 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP+++ +I+ G I +R +AI+ A+EM +D++++AGKGHE Sbjct: 401 SDNPRTEDPQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKGHEDYM 460 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ EK D + +++ L + Sbjct: 461 ILGT-EKIHFDDREEVKKHLEV 481 >gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase [Aromatoleum aromaticum EbN1] gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase [Aromatoleum aromaticum EbN1] Length = 502 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 144/476 (30%), Positives = 226/476 (47%), Gaps = 24/476 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +++DSR +Q G +F A G DG ++ AI +GA A++ + D + Sbjct: 21 HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDS----DGMRLEALSV 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L V R A ++G + VTGT+GK++V+ ++ GL IG Sbjct: 77 PALPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIG 136 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 D+ TTP + + + L+ ++ ++E SS GLDQ R++G++ Sbjct: 137 TLGCGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVA 196 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + ++Y AK RLF+ LP A+I DD + +R +G V Sbjct: 197 VFTNLTRDHLDYHSSMESYAVAKARLFD--LPGIGAAVINFDDDFGLAQARRLAASGMPV 254 Query: 268 LSVGYQ---------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + + + + + + +G + F V N + Sbjct: 255 IGYTRFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAV 314 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G + + ++ + +L GR + VG + +DYAH+ ++L +L+ +R+ Sbjct: 315 IGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVG-GVGEPLVVIDYAHSPDALAQVLEAVRS 373 Query: 379 ITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 GR ++ VFGCGGDRD GKRP+MG +A LAD IVT DNPRSEDP KI I+ G Sbjct: 374 TAQGRGGRLVCVFGCGGDRDAGKRPMMGDVARALADRVIVTSDNPRSEDPLKIIDAIVRG 433 Query: 436 I-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 P +R +AIR A+ DV+V+AGKGHE V G + D + R Sbjct: 434 AGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKGHEPYQEVL-GVRLPFSDVEQAR 488 >gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] Length = 503 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 233/490 (47%), Gaps = 29/490 (5%) Query: 30 INEVS------SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 I + SDSR I+ +F A G+ DG +I +AI GA+A+V S+ D Sbjct: 14 IKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESS----D 69 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139 F L V + A YG +I+AVTGT+GK+S ++ Q R Sbjct: 70 FEWNPDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSR 129 Query: 140 SGLSSFQIGPTSTISSFA------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + IG ++ TTP + L + L+ L S+ V V++EASS G Sbjct: 130 LGRKTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIG 189 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDA 251 +DQ RL+G+ + FTN RDH+DYH +Y AK RLF K + + Sbjct: 190 IDQGRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLFGWKGLKHAVVNLDDAMGIE 249 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + E+ + G + ++ + + + I D L G F Sbjct: 250 LASELKSKMALTGYSINGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFN 309 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L G+ +A GID ++ L L PGR + +G + +D+AHT ++LE Sbjct: 310 VSNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMGGKEAPL-VVIDFAHTPDALEK 368 Query: 372 ILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R + +G++ +FGCGGDRD GKRP MG+ A AD+ IVT DNPRSEDP+KI Sbjct: 369 GLSTLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKAES-ADVIIVTSDNPRSEDPKKI 427 Query: 429 RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 EI+ G+ I+ +R AI TA++ +K DV+ VAGKGHE V G K+ D D Sbjct: 428 MEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKGHEAYQEVK-GVKRPFADAD 486 Query: 488 IIREILGLIL 497 + L L Sbjct: 487 HVALALASRL 496 >gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Burkholderia rhizoxinica HKI 454] gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454] Length = 510 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 149/504 (29%), Positives = 223/504 (44%), Gaps = 33/504 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + E++ L + ++ DSR + AG FVA + D +I A+ + Sbjct: 11 IERVRAEVLAWLRARLAPHAQLRV-----DSRAVCAGDAFVAYAVDSADSRAYIADALQR 65 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTS 124 GA A++V + P+L V + AS YG+ ++L +TGT+ Sbjct: 66 GAAAVLVQAGGEFPG-------GGPVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTN 118 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + +V SG IG T TTP + +L+ L + G + Sbjct: 119 GKTTTSHWVAGALSGSGTRCAIIGTLGTGLPGQLSPTGFTTPDAPQVHHSLAALRAHGAS 178 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 VS+E SSH L Q R++G+ FTNL +DH+DYH+ +Y AK RLF+ Sbjct: 179 AVSMEVSSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFDW---PGLR 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEG 297 A + D + + R +S G H + A T+ + Sbjct: 236 AAVINRDDEAGRRLIGHLATRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDW 295 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + G F V N L G+ +A + L + +L V GR + +G + Sbjct: 296 GHAELEVGTLGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDE 355 Query: 358 I--YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAHT ++LE L +R I G+++ VFGCGG+RD KRP+MG IA LAD Sbjct: 356 PLVVVDYAHTPDALEKTLDALRPIATQRGGKLVCVFGCGGERDATKRPLMGAIAERLADS 415 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 IVT DNPRSE P I +I+ + +R AI A+ + DV+++AGKGH Sbjct: 416 VIVTSDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKGH 475 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E V G+K+ D D L Sbjct: 476 EATQEVM-GKKRPFSDQDHAHLAL 498 >gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 508 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 154/485 (31%), Positives = 231/485 (47%), Gaps = 32/485 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++SDSR I G +FVA G++ DG +I AI +GA+A++ +A D + Sbjct: 25 LASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEW----DVAH 80 Query: 93 LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L +D+ ++ A+ Y +A+TGT+GK+S A ++ R G + IG Sbjct: 81 LAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIGTL 140 Query: 151 STISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + TTP + L ++L +S+ G T +++EASS GL Q RL G+ Sbjct: 141 GVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSGMHF 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN RDH+DYH AY AK LF+ + A+I DDA +++R + Sbjct: 201 DMALFTNFTRDHLDYHGDMAAYEEAKAMLFDWPGLQH--AVINLDDAMGVRLVQRLQSRQ 258 Query: 265 CRVLSVGYQGKFI--------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 V GY + + + + + L G+F V N L Sbjct: 259 ADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQFNVSNVL 318 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G+ +A GI + +E L VPGR + +G + +DYAHT ++LE L + Sbjct: 319 GIIGILLAKGIALQDAVNAVEALTAVPGRMQQLGGGEAP-LVVIDYAHTPDALEKTLATL 377 Query: 377 RTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R++ + R + VFGCGGDRD GKRP MGK+++ AD +VT DNPR+E+P I +I+ Sbjct: 378 RSVANDRGGELWCVFGCGGDRDPGKRPQMGKVSMA-ADHIVVTTDNPRNEEPANIIGDIV 436 Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 GI +R AI A +QDV+++AGKGHE V G K +D D Sbjct: 437 AGITAPKNAPQIIEDRASAILWAGRHAARQDVILLAGKGHEAYQEVK-GRKLPFLDADHA 495 Query: 490 REILG 494 L Sbjct: 496 ALALS 500 >gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] Length = 506 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 228/494 (46%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +QL P Q ++ ++ DSR ++ G ++ A+ G + G F+ QA+ GA A Sbjct: 17 LAELADQLGAEPPQKA-AQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+LVV++ R + A+ +YG + + +TGTSGK++ Sbjct: 76 VLTDPTGAER----AAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + I + TTP L + + +GV V++E Sbjct: 132 TAYLVEGGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG G FTNL +H+++H + YF AK +LF + + Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNL-- 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307 DD Y + ++K A + G+ V T I + + PLP Sbjct: 250 DDEYGRRLVKEATVPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPLP 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A A G+D + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +LK +R +T G++ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 369 AVESVLKALRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G +R AI A+ D ++VAGKGHE + G Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 488 VRPFDDRQVLREAI 501 >gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] Length = 484 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 137/488 (28%), Positives = 223/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 67 SLVLTDSH--------QFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQN--LV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 235 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A I+T+DN R E E Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDNNRFESIE 411 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 470 Query: 484 VDCDIIRE 491 + +II+ Sbjct: 471 DEREIIKN 478 >gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi JD1] Length = 508 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ +I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] Length = 485 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 210/497 (42%), Positives = 282/497 (56%), Gaps = 21/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL D ++ + +I ++ DSR ++ G +F A+ G K DG FI Sbjct: 1 MRLRDLFSDD--------TVMTTEAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI + D T ++ VDN R+ L+L AS+ Y + P I AV Sbjct: 53 A-------QAIAAGAVAVAGDHLPTDEQGVALVRVDNPRRALALAASKFYPRQPATIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR GL+S IG I + LTTP PI L + + ++S Sbjct: 106 TGTSGKTSVAAFTRQIWQRQGLASASIGTIGLIAPQRSVYGSLTTPDPIALHRMVDEIAS 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + VTH+++EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T Y AK+RLF +L+ Sbjct: 166 EDVTHLALEASSHGLDQYRLDGVRIAAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVA 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296 A+I AD S EV+ A R+++VG G I L+ Q++ + + Sbjct: 226 PSGAAVISADHDCSAEVVAAARARKLRLITVGRNGDPGAGIKLRSASIDGFAQRLILEHQ 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + L PL GEFQ+ NALVAAGL I G D+ V E L +L GR E VG G Sbjct: 286 GRMQNLLLPLVGEFQIENALVAAGLAIGTGSDADSVFEALTQLEGAKGRLELVG-ERNGA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I+VDYAH ++L L+ +R ++IVVFG GGDRD GKRP+MG IA AD IVT Sbjct: 345 PIFVDYAHKPDALAKALQALRPYAKRQLIVVFGAGGDRDAGKRPLMGAIAAQQADRVIVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSE+ IRA I+ G E G+R EAIR AI L D L++AGKGHET IV Sbjct: 405 DDNPRSENAAAIRAAILAAAMGADEIGDRAEAIRAAIAALQPGDALLIAGKGHETGQIVG 464 Query: 477 NGEKKMSVDCDIIREIL 493 + + D + L Sbjct: 465 D-QVLPFSDHQAVVAAL 480 >gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella cf. novicida Fx1] Length = 487 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTD--------SQEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKNYRN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDISKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIREILG 494 + +II++ G Sbjct: 466 DEREIIKKYAG 476 >gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi 80a] Length = 508 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ +I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7803] gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. WH 7803] Length = 499 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 145/500 (29%), Positives = 228/500 (45%), Gaps = 20/500 (4%) Query: 9 KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + L+ + + P + ++ DSR + G +F+ + G + DG F P A+A G Sbjct: 3 QTLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENI--LAVTGTS 124 A A+++ + +LVV + F + AS + + + + VTGT+ Sbjct: 63 AAAVLI---GEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTN 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ ++ + Q G + G + + TT + L L+ G Sbjct: 120 GKTTTTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGTQ 179 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKE 241 ++E SSH LDQ R+ G + FTNL +DH+DYH + +AYF AK L+ + Sbjct: 180 VAAMEVSSHALDQQRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEG 239 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A++ DD + +++ R R + + N + + Sbjct: 240 PRAVVNVDDPWGRQLADRLGERAWRCSLAHEADLTMA--DLRMTSNGVDGALRTPLGEGR 297 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGR 357 F PL G F + N L A G + G+ L+L L VPGR E + Sbjct: 298 FHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPA 357 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + L L+ R G++I VFGCGGDRD+GKRP M IA LAD +VT Sbjct: 358 VLVDYAHTPDGLRNALEACRPFVRGQLICVFGCGGDRDRGKRPQMAAIAAALADQVVVTS 417 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP +I +++ G+P E + +R +AI AI D++++AGKGHE I Sbjct: 418 DNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKGHEDYQI 477 Query: 475 VTNGEKKMSVDCDIIREILG 494 + EK D + + L Sbjct: 478 LGT-EKVHFDDREQAEQALR 496 >gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] Length = 508 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 133/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L+ + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N + + ++++ + Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498 >gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] Length = 472 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 155/500 (31%), Positives = 234/500 (46%), Gaps = 39/500 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK + DF E++ +L+ I SSDSR I+ G+ F + G ++DG +I Sbjct: 1 MKSSN----DFLEMLEELNPRLSGVLPELIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+A+GA ++ + P + +D+ RK +L A + E I+ Sbjct: 57 TEALAKGARLLLCEEFLDVA---------IPQICIDDIRKANALLADLFHAHVSENLKII 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYL 177 AVTGT+GKSS A +Q + G S+ IG LTTP L + + Sbjct: 108 AVTGTNGKSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEV 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +V +EASSHGLDQ RL G+ A FTNL DH+ YH + + YF+AK LF++ Sbjct: 168 AKGGAEYVVLEASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDY 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K D + ++ + + K+ Sbjct: 228 DSKIKIV---NSDDAYGKRLRDSQTKVFSQDPDSDCQVLQNSVKLE-------------- 270 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRG 355 L L GE+ +YNA A L I + +EK +PGR E N+ G Sbjct: 271 GTECLLPQLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNN-G 329 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++ VD+AH +LE ++ +R ++ +VFGCGGDRD +R MG+ A DLAD I+ Sbjct: 330 AQVIVDFAHAQEALEKVICELRKNCREKLSIVFGCGGDRDPARRYGMGE-ASDLADEVIL 388 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 T+DNPRSEDP++I +I+ +R +AIR A E L D L++AGKGHE I Sbjct: 389 TNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKGHEEKQI 448 Query: 475 VTNGEKKMSVDCDIIREILG 494 + + D + R+++ Sbjct: 449 FKD-HIESFSDRSLCRKLIE 467 >gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] Length = 508 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L+ + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] Length = 508 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 133/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L+ + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N + + ++++ + Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498 >gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. RS9917] gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. RS9917] Length = 503 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 146/504 (28%), Positives = 236/504 (46%), Gaps = 18/504 (3%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + + +P Q I ++ DSR + G +F+ + G + DG F P Sbjct: 2 SQTLHSLLRAVGLPWPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWP---RA 58 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGT 123 A+ + P+LVV +++ A+ + + + + VTGT Sbjct: 59 LADGAAAAVIGPAAAAVQPPGPEDPVLVVPEPVAQWIGELAAAFWQRPSSRMTLIGVTGT 118 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ ++ + ++G + G + + TT L L+ + G Sbjct: 119 NGKTTTTHLIEHLAAQAGRPAALFGTLVNRWPGHSITATHTTAFADRLQAQLAEAVAGGT 178 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PK 240 ++E SSH L+Q R+ G + FTNL +DH+DYH + QAYF AK LF E L Sbjct: 179 QVAAMEVSSHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASD 238 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ DD + +++ +R + R Q + + + + + + + Sbjct: 239 GVRAVVTMDDPWGRQLAERLGDRCWRCSLEPDQEAELTMTDLVMRSSGVEGRLITPKGEG 298 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--- 357 F PL G F + N + A + G+ L+L+ L VPGR E V S Sbjct: 299 RFASPLVGRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLP 358 Query: 358 -IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + L+ L+ R GR+I VFGCGGDRD+GKRP M IA LAD +VT Sbjct: 359 AVLVDYAHTPDGLKNALEACRPFVEGRLICVFGCGGDRDRGKRPQMASIAAKLADRVVVT 418 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP++I A+++ G+P + +G+R AI A+ D++++AGKGHE Sbjct: 419 SDNPRTEDPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGKGHEDYQ 478 Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + + L L Sbjct: 479 ILGT-EKVHFDDREEAGKALRSRL 501 >gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] Length = 506 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 140/494 (28%), Positives = 224/494 (45%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL Q+ + R+ ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELAGQMGAATPE-RDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+LVVD+ R + A+ +YG + + +TGTSGK++ Sbjct: 76 VLTDPTGADR----AAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A ++ + + I + TTP L + + +GV V++E Sbjct: 132 TAYLIEGGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG F NL +H+++H + YF AK +LF K Sbjct: 192 VSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLFTPQRSKLGVVNF-- 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307 DD Y + +++ A + G+ + V T+ ++ PL Sbjct: 250 DDEYGRRLVEEAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPLA 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A A G+D + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDVGQ-PYLAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +L+ +R +T G++ +V GCGGDRD+ KR MG A LAD A++T DNPRSEDP Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDRTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G NR AI + D ++VAGKGHE + G Sbjct: 429 ILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKGHEQGQDIA-GV 487 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 488 VRPFDDRLVLREAI 501 >gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus haemolyticus JCSC1435] gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus haemolyticus JCSC1435] Length = 494 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 133/503 (26%), Positives = 220/503 (43%), Gaps = 31/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L K + + + + + ++++DSR G IFVA G D H F Sbjct: 1 MNANELFEKIRVKQV-------IGTLDINVTDITTDSRTASEGSIFVASKGYTVDSHKFC 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 + QGA+ IVV+ I + ++V +T + SL A LY + Sbjct: 54 QNVVDQGAKVIVVNH-------QQDINGDVTQVIVPDTLRVASLLAHTLYDFPSHQLTTI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+S+A+ + I + G S +G + TTP + L K + Sbjct: 107 GVTGTNGKTSIATMIHLIYRGLGKGSAYLGTNGFQINEHKTRGANTTPETVSLTKKIKQA 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 + +++E SSHGL RL G++ F+NL +DH+D+H T +AY +AK Sbjct: 167 VDENAEAMTMEVSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQL 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E L KE A++ DD +SK + K + Sbjct: 227 GEDLSKEKYAVLNNDDDFSKYLASVTPYE--IFTYGIDHDAQFMAKNIQESLQGVHFDFD 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + P G+F + N + A + G ++ +E L V GR E + + Sbjct: 285 TPIGTYSVKTPYVGKFNISNIMAAMIAVWSKGTSMEDIVRVVENLEPVEGRLEVLDPS-L 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT++ + ++ ++ ++I + G G+RD K P MG +A AD I Sbjct: 344 PIDLIIDYAHTADGMNKLIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGAVACR-ADYVI 402 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNP ++DP+ + AE+ G ++E +R E I+ AI++ D +V+A KG E Sbjct: 403 FTPDNPANDDPKMLTAELAKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVLASKGREPY 462 Query: 473 HIVTNGEKKMSVDCDIIREILGL 495 I+ K D +++GL Sbjct: 463 QIMPGHIKVPHRD-----DLIGL 480 >gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Puerto Rico] gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] Length = 472 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 23/472 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +++DSR ++ G+IFV + G F+P A+ GA+ IV +A L ++ Sbjct: 15 SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66 Query: 91 PILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I++ AS +G PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 67 QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 I TTP + L K LS L V ++ +EASSHG+ Q RL G+K Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL DH+DYH + + Y+ K +LF E+L +E A++ AD +E+ + A Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAGRNII 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V + + + V + +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKM-CGEVIYDGAFPVLGKFQISNLLCALAIVAASG 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385 V +++L GR E G RI +DYAHTS++L+ L +++ + + Sbjct: 306 SGHRDV--PIDRLASPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 +VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418 Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI A+ + + VL++AGKGHET + G+ D +R L + Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469 >gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] Length = 508 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTNST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] Length = 508 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 130/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL D++ K +LI + + +I+ ++ S+ + G++F A+ G DGH FI Sbjct: 4 KLNDVLLKLDQDLIKYVK----GSLDLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI G+ IV S N + +D+ +KF+S F++ Y + + + Sbjct: 60 IAIQNGSNVIVCSRDLDF------YNPNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + V + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSNMVKNKVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + + + Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSYDFKNAIKKSFTYSLKNSQADFFVSF--INEKTDSTEF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A + + D ++++L + + GR + Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+I+ + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKKFTTNRLISVFGSAGERDFAKRFLQGQISDSYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ ++ D++PR E+ I +I GI + +R +AI AI + D++V Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIVT 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I NGE + ++++ + Sbjct: 471 LGKGHESSIIYKNGEIFW-NEQEVVKNAI 498 >gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium abscessus ATCC 19977] gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium abscessus] Length = 515 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 151/496 (30%), Positives = 231/496 (46%), Gaps = 17/496 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L + +S + V+ ++ + G +F A+ G G F +A++ GA A++ Sbjct: 20 DLASLVSAELHGPSATTVGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSAGAAAVL 79 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130 +A + + A + +LV R L A+ +YG+ + ++ VTGTSGK++ Sbjct: 80 TDAAGA--ELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGKTTTT 137 Query: 131 SFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V+ + +G IG + LTTP L + L+ + +GV V +E Sbjct: 138 YLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTVVMEV 197 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH L +R+DG + G+FTNL RDH+D+H Q YF K RLF P+ + + Sbjct: 198 SSHALALNRVDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCI 257 Query: 250 DAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 D + M ++ G + Q+ + +D + Sbjct: 258 DDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTI 317 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG + V N LVA + +G+ A VPGR E V VDYAH Sbjct: 318 ALPGHYNVANCLVAIAILDVLGVS-AATAAPGIATAGVPGRMEAVAAGQ-PFLAVVDYAH 375 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +L +L+++R+ GR+ VVFG GG+RD+GKR MGK+A +LAD+ +VTDDNPR+E+ Sbjct: 376 KPGALRAVLESLRSHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEE 435 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P IR EII G G IE G+R AI A D ++VAGKGHE+ + Sbjct: 436 PAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGKGHESGQKTGD-VT 494 Query: 481 KMSVDCDIIREILGLI 496 D +R L + Sbjct: 495 VPFDDRVELRAALEAL 510 >gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] Length = 521 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 153/505 (30%), Positives = 224/505 (44%), Gaps = 16/505 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L + L + + I ++ ++ +Q G +F A+ G+ G Sbjct: 18 LAELAVQVGAVLADG-PHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAAD 76 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AI +GA A++ A + P+LV R L A+ +YG + ++ Sbjct: 77 AIERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVG 136 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178 +TGTSGK++ V+ + +G + IG A + LTTP L L+ + Sbjct: 137 ITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMV 196 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GV V +E SSH L R+DGI+ G FTNL RDH+D+H T YF AK LF+ Sbjct: 197 ERGVDTVVMEVSSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPAS 256 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +++ D + M A V + G + Q+ T Sbjct: 257 ALRGHSVVVCIDDEAGRAMADRAGAAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAG 316 Query: 299 DFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 LPG + V N L+A + A+G+ L + VPGR E V Sbjct: 317 VGHRVRIGLPGHYNVANCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVDRGQ-DFL 374 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH +L +L +R R+ VVFG GGDRD GKR MG+IA +LAD+ +VTD Sbjct: 375 ALVDYAHKPGALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTD 433 Query: 418 DNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR EDP IR I+ G +E +R EAI A++ DV+++AGKGHET Sbjct: 434 DNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 493 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 E + D + L + Sbjct: 494 GQ-RGGAEVRPFDDRVELARALEAL 517 >gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] Length = 508 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 135/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 DI I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DIIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N + + ++++ + Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498 >gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 484 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 127/502 (25%), Positives = 227/502 (45%), Gaps = 30/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++DL+ + ++ ++ + ++ +S +++ I+ F+ + G D + I Sbjct: 1 MLVRDLLKGIPVKWVSDDKLY-----DIDVDNISFNTKDIKPNSAFLLVKGISFDPYEMI 55 Query: 61 PQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENI 117 + + + + + P ++V+N R+ + + Sbjct: 56 DEIFDSKKVKLFITEKPLPEK----------PHILVENARRTFGMICRNFFNIDFSKIKS 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++ + I + SG + +IG T I + TTP + + ++ Sbjct: 106 IGITGTNGKTTTNYLIDSILRVSGYKTIRIGTTEYVIVDEKIEANNTTPGIYDIFEMVAK 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +G + V +E SSH LDQ R+ G+ FTNL DH+DYH+T + Y+ +K + Sbjct: 166 GVKKGASAVCMEVSSHALDQDRVYGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKK---- 221 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L + + A + + + S + + V + +++ Sbjct: 222 -LFTKEYSKNAAINIDYDYGKRLYNEVEIAKYSFSKGKGDVGVVDVSYSLDGINCRVNIG 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G + N L A +GI ++ +E+ VPGR E G Sbjct: 281 DEVISLNSHLVGRHNLENILGAVTATYILGISKDDIIRGVEQFKNVPGRLE--KFEKNGA 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +VDYAHT ++L+ +L+ ++ GR+I VFGCGGDRD+ KRP M K+A +DI IVT Sbjct: 339 YFFVDYAHTDDALKNVLEALKGFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP I EI+ G + +R AI+ A + D++++AGKGHE Sbjct: 399 SDNPRTEDPNAIIDEILTGFENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKGHEDYQ 458 Query: 474 IVTNGEKKMSVDCDIIREILGL 495 I+ K D + + + LG+ Sbjct: 459 IIG-KTKYHFDDREEVAKNLGV 479 >gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 487 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 142/481 (29%), Positives = 229/481 (47%), Gaps = 26/481 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + I +++ DSR + G +F A G++ DGH F+ AIA+GA A++V +L Sbjct: 17 VGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEVAL--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 + P LVV + R + + +G+ E ++ +TGT+GK++ + F+ I + Sbjct: 74 ------DIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLA 127 Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + IG + + + TTP L + L + GV V +E SSHG+DQHR+ Sbjct: 128 GRRTGLIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRI 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG G FTNL +H+DYH T + Y+ AK +LF LP+ + + D + Sbjct: 188 DGTSFRIGVFTNLSPEHLDYHGTIEQYYAAKAQLF---LPERTKQAVIGTDTEWGVRLAT 244 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + + + + P+ G YNA A Sbjct: 245 QVRIPAVTYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAV 304 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + A+GI+ + L + H V GRF+ + + + VDYAHT +SL ++ R + Sbjct: 305 AVAEALGIEGDTIERGLAECHQVAGRFQRIDAG-QPFTVVVDYAHTPDSLRALIATARAL 363 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR+I+V G G RD+ KRP +G+ A AD+AI+T DNP EDP +I A+++ G Sbjct: 364 SPKGRVILVAGARGRRDRLKRPELGRAAAT-ADVAILTADNPGDEDPGEIVAQLLAGTLD 422 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS-VDCDIIREI 492 I + +R AI AIE+ + DV+++ G+GHE G+ D + RE Sbjct: 423 VDHKQIIVELDRRGAIGHAIEIAEESDVVLIVGRGHE--QTFRVGQTVYRLDDREAAREA 480 Query: 493 L 493 + Sbjct: 481 I 481 >gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] Length = 508 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ +V S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] Length = 489 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 170/475 (35%), Positives = 251/475 (52%), Gaps = 24/475 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +++DSR+++ G++FV + + F+ A+ GA IV SA +L Sbjct: 26 QVSGITADSRNVKPGFVFVCLSEVAK---KFVSDAVKAGARFIVAGSAEALPRV-----D 77 Query: 89 NTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N I++ F AS Y G+ PE + AVTGT+GK+SVA F +QI +G + I Sbjct: 78 NAQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASI 137 Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T I + LTTP + L K LS L + V ++ +EASSHG+ Q RL G+K Sbjct: 138 GTLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVK 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + +FTNL RDH DYH + Y+ AK +LF E+L E A++ AD E+ + + Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELRRLVGSR 257 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + K + + V I +D FP+ G+FQ+ N L A + Sbjct: 258 NTITYGINVGDVRLTRLKSSTLGHNVAVEI-CGKVVYDGAFPVLGKFQIPNLLCALAIVT 316 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382 A G + + ++KL GR E GGR+ VDYAHT +LE L +++ Sbjct: 317 ASGARCSDI--PIDKLVSPRGRMEL-----IGGRVIVDYAHTPAALEHALTSLKWHGFPQ 369 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 +I++VFGCGGDRD+ KR MG +A AD+ IVTDDNPR+E+PE IR EI+ IE Sbjct: 370 KIVLVFGCGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEILSHCERAIEI 429 Query: 443 GNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 NR +AI A+ + D +L++AGKGHET + GE D D++R L + Sbjct: 430 PNRSDAIHYAVNFAVRNDHMLLIAGKGHETTQQIA-GESIEFNDGDVVRSCLRAM 483 >gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] Length = 494 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 216/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++++ ++++DSR + G IFVA G D H F + QG IVV+ L+ Sbjct: 20 DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLKG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144 ++V +T + SL A L+ ++ TGT+GK+S+A+ + I ++ SS Sbjct: 75 --EVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKSS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + +G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DD +S+ + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 V + + P G+F + N + A Sbjct: 253 PYEVFTYGI--DHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G ++E ++ L V GR E + N + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ G Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVAC-HADYVIFTPDNPANDDPKMLTAELAKGATHSN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +IE +R E I+ AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 YIEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium ulcerans Agy99] gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium ulcerans Agy99] Length = 559 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 151/505 (29%), Positives = 222/505 (43%), Gaps = 16/505 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L + L + + I ++ ++ +Q G +F A+ G+ G Sbjct: 56 LAELAVQVGAVLADG-PHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTAD 114 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AI +GA A++ A + P+LV R L A+ +YG + ++ Sbjct: 115 AIERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVG 174 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178 +TGTSGK++ V+ + +G + IG A + LTTP L L+ + Sbjct: 175 ITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMV 234 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GV V +E SSH L R+DGI+ G FTNL RDH+D+H T YF AK LF+ Sbjct: 235 ERGVDTVVMEVSSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPAS 294 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +++ D + M V + G + Q+ T Sbjct: 295 ALRGHSVVVCIDDEAGRAMADRAGVAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAG 354 Query: 299 DFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 PG + V N L+A + A+G+ L + VPGR E V Sbjct: 355 VGHRVRIGSPGHYNVSNCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVDRGQ-DFL 412 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH +L +L +R R+ VVFG GGDRD GKR MG+IA +LAD+ +VTD Sbjct: 413 ALVDYAHKPGALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTD 471 Query: 418 DNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR EDP IR I+ G +E +R EAI A++ DV+++AGKGHET Sbjct: 472 DNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 531 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 E + D + L + Sbjct: 532 GQ-RGGAEVRPFDDRVELARALEAL 555 >gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] Length = 508 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 135/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ IV S SN + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVIVCSRDVDF------YSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV + + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSNMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTD--FTRF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I D +++ L+ + + GR + Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + T+ R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ ++ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498 >gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] Length = 493 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 131/505 (25%), Positives = 224/505 (44%), Gaps = 26/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + L+ E ++ ++ DSR I +FV +VG DGH +I Sbjct: 1 MKLSKICEEIEYTLLQGS-------LETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P A+ + A IV+ ++ +A I N +L V++ R L+L ++ L+ + Sbjct: 54 PDAVEKEASVIVLEK----EEEAAQIPENITVLKVESARLALALMSAALFDHPARKLVTI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 +TGT GK++ ++++ + +G IG + ++ TTP L + + + Sbjct: 110 GLTGTKGKTTTTYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +V +E SS GL R GI G FTNL DHI + + + L Sbjct: 170 VEAGCEYVVMEVSSQGLKLDRTAGILFDYGIFTNLSPDHIGP---AEHASFEEYMECKSL 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISV 295 L ++ I D + + + H + S + + + + Sbjct: 227 LFRQCRIGIVNADDEHVDGILKGHTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVT 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D +PG F VYN++V +C GI +LE L K+ V GR E + + Sbjct: 287 GCMDCQAKVHIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQV-KGRVEMLPVSK-D 344 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DYAH S +L + R+I V+G GG+R + +R MG++ ++AD+ ++ Sbjct: 345 YTLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVL 404 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPR E+ I +I G+ +IE +R EAI ++ D++V+ GKGHE Sbjct: 405 TCDNPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKGHED 464 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 + G K + + + EIL + Sbjct: 465 YQEIK-GVKYHFDEREAVAEILDEM 488 >gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 473 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 224/473 (47%), Gaps = 17/473 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ + + DSR ++ G +F +I +A A+ AI + + + A Sbjct: 8 QKLSVTGLCDDSRRVKPGNLFFSIPAEGY-------EAFAR--SAIAAGAVAVVGETMAP 58 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLS 143 + + V + + A Y ++ A+TGT+GK++ A + + + G Sbjct: 59 EGLTSKWIQVPDVKAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGRK 118 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + I + LTTP + L + S ++G T + +EASSH L Q R+ GI Sbjct: 119 TALLGTIKNKIGDKSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAGI 178 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + +G F+NL +DH+DYH+T AYF AK LF + L + A+I DDA+ +++ Sbjct: 179 RFRSGLFSNLTQDHLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLFNALDC 238 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V +G + F PL G+F V N L+ Sbjct: 239 RKVAVSRLGKAKADVKPFGEIKSTEDGLEFTLPMIATDKFETPLCGDFNVDNLLLVLAWA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+ + + VPGRFE V + G + VDYAHT ++LE +L R++ G Sbjct: 299 HALCV-PEDAMRKAITTVRVPGRFEKV-WSKDGKHVIVDYAHTPDALERVLNVARSLCRG 356 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440 ++ VFGCGGDRD+ KRPIMG IA +AD A +T DNPR+E P I A++ G+ F Sbjct: 357 KLSTVFGCGGDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIADVRAGMTTDKFE 416 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 NR EAI A L D LV+AGKGHE I+ K D +I + + Sbjct: 417 VVENREEAINRACAELKSGDWLVIAGKGHEDYQIIG-KTKHHFDDREIAVKAM 468 >gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii L2-6] Length = 492 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 143/502 (28%), Positives = 220/502 (43%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ L+ E I ++ DSR G +FV IVG + D H + Sbjct: 1 MKLEQLLEGVSYTLVQGS-------LELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 Q +A G A+VV L +L V+++R L+L + L+G + + Sbjct: 54 AQCVADGVTALVVQHDIDLSTVP-----GAAVLKVESSRYALALMSGNLFGNPSRRMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG Q+ TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ GI G FTNL DHI + + + Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGIHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD ++ +++ ++ H+ V V G Sbjct: 229 RCTTGVVN--IDDENTEALLEGHTCKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSG 286 Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 KD D +PGEF VYNAL A + +G+ + E L + VV GR E V + Sbjct: 287 KDDMDVKVNMPGEFSVYNALAALTVGKVLGLPDEAIHEGLGR-CVVKGRVELVPISR-KF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +AD +I+T Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYEPHRLVVVFGCGGNRSKLRRYGMGEICARMADFSILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +DN R E E I A+I G+ F+E +R++A+ A++ + D++ V GKGHE Sbjct: 405 EDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G K ++ +++ E Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485 >gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] Length = 508 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 135/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I+ V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ IV S N + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQKGSNVIVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] Length = 504 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 138/503 (27%), Positives = 213/503 (42%), Gaps = 26/503 (5%) Query: 8 YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K + ++I + + I+ +S DSR G ++ A+ G DGH F+ QAIA Sbjct: 2 EKSLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAA 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A++ SL L V N+R +S A+ Y ++ VTGT Sbjct: 62 GARAVIHQVPLSLYHPE------IAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTD 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GKSS SF+ Q+ GL + S R +TP + K L + G Sbjct: 116 GKSSTVSFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAG 175 Query: 182 VTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +H +E++SHGL +RL I A TN+ +H+++H T + Y + K LF Sbjct: 176 CSHAVIESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQ 235 Query: 240 KESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I DD + + G Q + + T+ Sbjct: 236 NRGIAVINIDDKNHNLFAGTASGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPK 295 Query: 298 KDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + G F V N L A A +C G++ + L V GR V Sbjct: 296 GEARVDLNVAGRFNVDNILAASAAVCELEGVEPKTLEPLFPGLKAVKGRMVPVDEGQA-F 354 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++ VDYAHT + + IR + GR+ +F G+RD KRP++G IA + D+ ++ Sbjct: 355 QVIVDYAHTPGAFRRLFPAIRPLVRGRLFALFSSAGERDLEKRPVLGSIADEYCDVIVLA 414 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 D++PR E+P + E+ G + NR EA+R A M+ K D +++ GKGHE Sbjct: 415 DEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLLGKGHE 474 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 I NG D + + IL Sbjct: 475 GSIIYANGPVPW--DEEEMARIL 495 >gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] Length = 512 Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 157/477 (32%), Positives = 231/477 (48%), Gaps = 30/477 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ DSR ++ G+ FVA+ G K DG F+P+A+ +GA +V Sbjct: 43 RVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVPEA-------- 94 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ-RSGLSSF 145 P+ VV + R L+ A +G + VTGT+GK++ + + G Sbjct: 95 --PVAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTCYALHAVLAGAFGEERC 152 Query: 146 QIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + T+ + + TTP + AL+ + +GV V++E SSHG+ R++GI+ Sbjct: 153 GLMTTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEGIR 212 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+D H T + Y+ K RLF L P + ADDA+ + + Sbjct: 213 FAGAVFTNLSRDHLDLHGTMEEYYRTKRRLF---LWARGPKLSNADDAWGRRLAGEVEG- 268 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G ++ V + + + PL G++ V NA AA L + Sbjct: 269 --VRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPLFGDYNVQNAAGAAALAL 326 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379 +G+ V L + VPGRFE VG G + VDYAHT LE +L+ R + Sbjct: 327 ELGVPGETVARALRGMPQVPGRFERVGGP--GFEVIVDYAHTDVGLEAVLRVAREVARRG 384 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 GR+I VFG G+RD KRP+MG++A LAD I+T D+ SEDPEKI E+ G+ Sbjct: 385 RPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYSEDPEKIAREVAAGVEDG 444 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAIR A+ + DV+VVAGKGHE V + G+ D +IREIL Sbjct: 445 RLEIVLDRREAIRRALSEAGEGDVVVVAGKGHERVQHLPWGDVPFH-DATVIREILE 500 >gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 495 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ I ++++DSR Q G +FVA G D H F + QG + I+VS I Sbjct: 21 EKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQGCQVIIVSH-------QQEI 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + SL A+ LY + ++ TGT+GK+S+A+ + I ++ G S Sbjct: 74 TGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTSIATMIHHIYRKLGKGS 133 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K ++ + +++E SSHGL RL G+ Sbjct: 134 AYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTLEVSSHGLSLGRLRGVD 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L +E ++ DDA+S+ + Sbjct: 194 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFVVLNKDDAFSEYLASVT 253 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 H Q T +F P G F V N + A Sbjct: 254 PFEVFTYGVTNDAQFTAHHINESLQGV--QFTFKTPEGEFQVKSPYVGLFNVSNIMAAMI 311 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + GI +++ +E L V GR E + + + +DYAHT++ ++ ++ ++ Sbjct: 312 AVWSKGIALNDIVDAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMDKLIDAVKPFA 370 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG++A AD I T DNP ++ P+ + E+ G Sbjct: 371 KQKLIFLCGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDAPKTLTQELAKGATHDN 429 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +IE +R E IR AI + D +V+A KG E I+ K D +++GL Sbjct: 430 YIEFEDRAEGIRHAINIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 481 >gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] Length = 496 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 126/479 (26%), Positives = 212/479 (44%), Gaps = 26/479 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++++++DSR + G IFVA G D H F I QG +VV+ + Sbjct: 20 DKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELE-------L 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 +VV +T + SL A L+ VTGT+GK+S+A+ + I ++ +S Sbjct: 73 DGEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDG 201 +G + TTP + L K + + +++E SSHGL RL G Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLSLGRLRG 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ F+NL +DH+D+H T +AY +AK E L KE ++ DD +S + Sbjct: 193 VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSHYLAS 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 K + + S D+ P G F + N + A Sbjct: 253 VTPYEVFTYGIDNEAQFM--AKNIDESLQGVEFDFSTPFGDYRVKSPYVGRFNISNIMAA 310 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G ++ + L V GR E + + + +DYAHT++ + ++ ++ Sbjct: 311 IIAVWSKGASMEEIINAVTSLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMNKLIDAVKP 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ G Sbjct: 370 FVKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATH 428 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E I+ AI++ D +V+A KG E I+ K D +++GL Sbjct: 429 DNYVEFDDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 482 >gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 492 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 153/504 (30%), Positives = 240/504 (47%), Gaps = 27/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L+ ++ I + D + G +F+A+ G+ E G Sbjct: 1 MKLSELLAGHDHHILQGDPETTW------ITAGTTFDVGRVTPGSLFIAVPGHGEGGPGS 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A+A+GA A++V SA + + V +TR ++ ASR +G + Sbjct: 55 VGPALARGAAAVLVDGGAPDLPMSA---AGVCAVSVPDTRTAAAVVASRYFGAPGRQMDM 111 Query: 118 LAVTGTSGKSSVASFVQQICQR-SGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +A+TGT+GK+SV+ V+ + + G + IG + LTTP L Sbjct: 112 VAITGTNGKTSVSYMVESVLRLSEGATVGVIGTAGSRIGDEPILMPRSVLTTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +G V +EA+S L HR+D + G FTNL +DH+D H T + Y +AK+R Sbjct: 172 LLGCMRDRGAGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF A++ ADD + + + + ++ + + Sbjct: 232 LF---QGLCRRAVVNADDPVGAGI-QAMMPGAVTTYGLDTEAADYRATELTVDASGTRFV 287 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P+PG + V NAL C A+G D ++ L+++ VPGRFE Sbjct: 288 LHHDGRKYPAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFERFR-T 346 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 RG + VDYAH+ +SL+ +L IR GR+I VFGCGGDRD KR MG+IA +D+ Sbjct: 347 PRGTSVIVDYAHSPDSLDKVLTTIRGFAPGRVITVFGCGGDRDTTKRAEMGEIAGTHSDL 406 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T DNPR+EDPE I +I G+ F +R AI A+ D++++AGKG Sbjct: 407 CILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAGKG 466 Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492 E IV + D +RE+ Sbjct: 467 SEPHQIVGE-KLLPFSDMATVREL 489 >gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] Length = 472 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 160/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +++DSR ++ G+IFV + G F+P A+ GA+ IV +A L ++ Sbjct: 15 SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66 Query: 91 PILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I++ AS Y PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 67 QIIICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126 Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 I TTP + L K LS L V ++ +EASSHG+ Q RL G+K A Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASA 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL DH+DYH + + Y+ K +LF E+L E A++ AD E+ + A Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRNII 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V + + + V + +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKV-CGEVIYDGAFPVLGKFQISNLLCALAIVAASG 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385 V +++L GR E G RI +DYAHTS++L+ L +++ + + Sbjct: 306 SGHRDV--PIDRLASPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 +VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418 Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI A+ + + VL++AGKGHET + G+ D +R L + Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469 >gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] Length = 501 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 219/486 (45%), Gaps = 26/486 (5%) Query: 18 LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 S +QW ++ + +DSR + G F+A G DG + A+ +GA A +V Sbjct: 7 SSHDAVQWLRERVTGTLQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATACLVEQT 66 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134 A + + + + A++ +G ++ +LAVTGT+GK+S A ++ Sbjct: 67 G----VEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTNGKTSTAWWLA 122 Query: 135 QICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + +G + + +TTP P+ L +A + QG+ + Sbjct: 123 GALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQGLGACA 182 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASS GL + RLDG + FTN +DH+DYH + Y+ AK LF+ P A+I Sbjct: 183 IEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFDW--PGLQAAVI 240 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD ++ + S+ G + + + T+ + Sbjct: 241 NVDDPAGAQLHAELTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQRVPLQTR 300 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G + V N L + G+ A + L VPGR + + + VDYAHT Sbjct: 301 VIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRL-VAPGQPLVAVDYAHT 359 Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++L+ L+ +R + G++ VFGCGGDRD GKRP+MG +A AD +VT DNPRS Sbjct: 360 PDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQQHADWVVVTSDNPRS 419 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E+P I +I+ G + +R AI AI + DV+++AGKGHE G Sbjct: 420 EEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAGKGHEDYQETA-GV 478 Query: 480 KKMSVD 485 ++ D Sbjct: 479 RRPFDD 484 >gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 496 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 165/513 (32%), Positives = 262/513 (51%), Gaps = 44/513 (8%) Query: 1 MKLQDLIYKD------------FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWI 45 M L++L++ +L I +I V+ + + ++ ++ Sbjct: 1 MILRELLHDIGHFSVIPVLGTGIQQLALHTGITLGNCTVDFNIEIKGVTCNPKKVKEDYL 60 Query: 46 FVAIV--GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103 FV + G + G I A AI+ S + + + N R+ Sbjct: 61 FVCVSEEGERCVGG------IK--ASAIIASFSAIPAQGAEI------YIFYPNPREIYG 106 Query: 104 LFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QD 159 SR Y +A VTGT+GK+SV F +QI Q +G ++ +G T + + Sbjct: 107 KIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGCNAASVGTLGTCVNNERKDNN 166 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 + LTTP L L ++S+ + H+++EASSHG+DQ+R+ G++L A +FTN +DH+DY Sbjct: 167 SNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRIHGLELNAAAFTNFSQDHLDY 226 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H+ YF AK RLF E+LP+ ++ +D ++K A +V++ G G I L Sbjct: 227 HKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKIAEKRSNKVITYGKTGSDITL 286 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + + Q +TI + + + +P+ G+FQ YN L A G+ IA ++K Sbjct: 287 LRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAIGIVIASK--LDYQRICIDKF 344 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +PGR E V +VDYAHT ++L+ L +++ S ++++VFGCGG+RDQ KR Sbjct: 345 VSLPGRMEKVKP-----FAFVDYAHTPSALKQALLSLKWHFSKKVVLVFGCGGNRDQAKR 399 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NK 458 MGK+A AD IVTDDNPR EDP KIR +I+ P +E G+R EAI+ I + ++ Sbjct: 400 AKMGKMAKMYADKVIVTDDNPRDEDPAKIRYDILLCCPNALEVGDRREAIKKGINIAYDE 459 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 VL+VAGKGHE I+ N + D ++I+ Sbjct: 460 NMVLLVAGKGHEKFQIIGN-KTFEFSDVEVIKN 491 >gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] Length = 476 Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 148/475 (31%), Positives = 219/475 (46%), Gaps = 23/475 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I V ++ +Q G IF+ G K G F+ +A+A+GA AIV + SL I Sbjct: 8 TEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLP----IID 63 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + V NT FLS +++L E +++A+TGT+GK++V+ FV Q+ + Sbjct: 64 KEIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAA 123 Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG +LTT L L +GV+HV +EASS GL QHRLD Sbjct: 124 VIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLDH 183 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + G F NL DH++ H +AY AK R L S ++ D + Sbjct: 184 CDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR-----LADLSKKLVLNGDDNFCRSVGIYD 238 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 H++ V K + + + P G++ V N + A Sbjct: 239 KKKSCSFGFDNHNDL-HIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAALMA 297 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +GI ++EH+ L + GR E + N G +YVDYAHT+ +L+ +L+ S Sbjct: 298 VWRLGIPIDDIIEHMWSLKLPEGRLEKI-DNPVGIDVYVDYAHTAEALQAVLQTFDR--S 354 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 I +VF CGG+RD+ KR MG +A AD+ +T DNPR EDP I II G Sbjct: 355 KTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDPIIINESIIAGFTEQQY 414 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI A+ K D+++VAGKGHE + N +K D I++ Sbjct: 415 YEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQTQQIKN-QKFPFSDQQCIKDYF 468 >gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] Length = 478 Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 143/500 (28%), Positives = 226/500 (45%), Gaps = 35/500 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ K I + + +I V++DSR I+ G +FVAI G + DGH FI Sbjct: 1 MNLTDILDKINY-------IDYTKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AIA GA IVV+ + D + + V ++R L+ ++ + + ++ Sbjct: 54 DKAIANGANTIVVTEDVTEID-------DINYIKVKDSRVALAQISNVVCDFPSKKLRVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ AS + I + IG T + + TTP + K L Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + VE SSHGL HRLDGI F NL +H+D+H+ + YF+AK + Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAK-----MI 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + I D K ++ + E Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ F+ F VYN++ A +G + + + LE V RFEFV N G Sbjct: 276 KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NEMGIN 334 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +D+AHT + E I K++ R I V+G GDR R +GKI+ + ++VT Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTT 392 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P+ + E I +II GI ++ +R AI+ AIEM N+ D +++ GKG E Sbjct: 393 DDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENFI 452 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + EK + + + E+L Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472 >gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] Length = 487 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 138/502 (27%), Positives = 231/502 (46%), Gaps = 31/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +I + + + + +I + DSR ++ G +FVAI G + DGH FI Sbjct: 1 MKLSQVI-----KCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ GA A+V A L N P + V ++R L AS Y + + Sbjct: 56 GQAVENGAAAVVGEEALEL---------NVPYIKVTDSRTSLGKLASCFYDRPSRKHKII 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A ++ I + +G + +G + I++ TTP + + K LS Sbjct: 107 GITGTNGKTTTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKS 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E SSH L+Q R +G++L G FTNL DH+DYH+ YF + L Sbjct: 167 L---DEFVVMEISSHALEQSRTEGLELDYGLFTNLAHDHLDYHENMDQYFL-DKKKIFTL 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L +I +++ +++ + ++ +G K AI+ + + ++G Sbjct: 223 LKDGGKGVINLYNSWGEKMAEDLQKEKIPLILLGDDQCCS--IKDVAINGRTVFILEMKG 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + F+ FPLPG VYNA +A + +GID+A +++ L +PGRFE + G + Sbjct: 281 QSFEIEFPLPGHHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPGRFETIIH-PSGAK 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++ E L+ R + RI ++G G RDQ KR M K + +T Sbjct: 340 FVVDYAHTVDAFEYCLEAARQQGAERIFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTA 399 Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+ E +++ +++ G +R AI+ A + D + + GKG E Sbjct: 400 DDLNDESEDEMISQLHRLNKEFGCGKGEVIPDRTLAIQKAWREAGESDWIFITGKGPEAY 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 D + ++ +L Sbjct: 460 Q--KPFALPAESDLETLKLLLE 479 >gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii SL3/3] Length = 492 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 139/502 (27%), Positives = 220/502 (43%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ L+ + +I ++ DSR G +FV IVG + D H F Sbjct: 1 MKLEQLMEGVPFTLVQGS-------LDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+G A+V+ L ++ V+++R ++L ++ L+G + + Sbjct: 54 ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGNPARQMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG D TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ G+ G FTNL DHI + + + Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD + +++ K+ H+ V V G Sbjct: 229 RCDVGVVN--IDDENTAALLEGHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTG 286 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K + D +PGEF VYNAL A + +G+ A + + L K VV GR E V + Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGK-CVVKGRVELVPISK-KF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +AD +I+T Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +DN R E E I A+I G+ F+E +R++A+ A++ + D++ V GKGHE Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G K ++ +++ E Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485 >gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] Length = 474 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 212/492 (43%), Gaps = 40/492 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVG---NKE---DGHLFIPQAIAQGAEAIVV 73 +F + + ++ DSR +Q G+IFVAI G +GH FIP+AIA+GA IV Sbjct: 7 LFGPSYPTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVG 66 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + L P L V + R L+ A+ +G HP +L + G +G + Sbjct: 67 TQDLELP---------VPYLKVADPRSALADLAAAFWG-HPAKMLQLVGITGTKGKTTVT 116 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ G ST+ + TTP + + L+ G + Sbjct: 117 VLAHHLLQFAAPPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVL 176 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+ G++ G +TNL DH+D+H + + YF AK L L + ++ Sbjct: 177 EVSSHALALERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAKQTL----LRRSRFGVLN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +D Y ++ G + + + F P+ Sbjct: 233 REDPYYPQL-------PGLTHWSYGMGGDWQAENLLETAGGLHFRVRSPLGAFKVSLPMI 285 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+F NAL A +G+ + LE VPGR + V R+ VD+AHT + Sbjct: 286 GKFNALNALAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQAT--PFRVIVDFAHTES 343 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 S+ L+ +R T GR+++V G G+R +R +G+ A +LAD+A+ T+++ RSE+ E Sbjct: 344 SVRAALETLRPTTRGRLVIVVGAAGERGAERRTGIGRAAGELADLAVFTEEDHRSENLEA 403 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I + + +R EAIR AI D L++AGKGHE E Sbjct: 404 ILQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKGHERTLE-RGSEVLPW 462 Query: 484 VDCDIIREILGL 495 + + R+ LGL Sbjct: 463 NEVEEARKALGL 474 >gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] Length = 479 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 222/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ +++ L I + +I + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KNINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------QFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I G I +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 407 NIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIRE 491 + +II+ Sbjct: 466 DEREIIKN 473 >gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica CNB-440] gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinispora tropica CNB-440] Length = 514 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 148/503 (29%), Positives = 230/503 (45%), Gaps = 22/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +L + E E + V+ S+ ++ G ++ A+ G + G F+ Sbjct: 14 RLGNLAARLAAESGADAVDLRPGPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVS 73 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119 A GA A++ + AT + P+LVV + R L AS +YG ++ Sbjct: 74 AAARAGAVAVLTDPDGAA----ATAEVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIG 129 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S A V+ + +G ++ IG T D+ TTP L L+ Sbjct: 130 VTGTAGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAAR 189 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GVT V +E SSH L R+ G++ G +TN G DH+D+H YF AK +LF+ Sbjct: 190 ERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG-- 247 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + ++ A + G + Q+ T+ Sbjct: 248 ----RCEVEVLNHDDPALLPLHRPATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPDG 303 Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 LPG V NAL+A + +A G+ + + VPGR E V + R Sbjct: 304 LTLPAGVALPGRHNVANALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVP-SPGPVR 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH ++++ L +R ++GR+I + G GGDRD+GKRP+MG A + AD+ +VTD Sbjct: 363 GVVDYAHKTDAIVAALAALREFSTGRLICLLGAGGDRDRGKRPLMGVAAAEGADVVLVTD 422 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+EDP IRAE++ G+ +E R AI A+++ DV+ + GKGHE Sbjct: 423 DNPRTEDPADIRAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKGHEQ 482 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 V G+ D + L Sbjct: 483 GQEVG-GQVHPFDDRTELAAALR 504 >gi|51246753|ref|YP_066637.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Desulfotalea psychrophila LSv54] gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein [Desulfotalea psychrophila LSv54] Length = 1014 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 145/530 (27%), Positives = 244/530 (46%), Gaps = 44/530 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ E + S + + + +V++DSR + +G +F+A G +DGH ++ Sbjct: 15 LEKLLEGL--EWLQLPSRSELDPQTHLVADVTADSRQVASGSLFIARRGGIQDGHAYVED 72 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ +G ++V + Q+ A + ++ V +++ + + E + + + Sbjct: 73 ALLRGCPVVIVEAGSVSQNAYAHCPA--LVIEVADSQAAYGKILANYFANPAEKLSLVGI 130 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF------AQDNRLTTPSPIYLAKAL 174 TGT+GK++++ ++ + R G IG + LTTP + + L Sbjct: 131 TGTNGKTTISYLLEDMLTRLGHQVGVIGTVNNRFYRADGSQEIIATSLTTPDAKIVQQLL 190 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++ GV V +E SSH + Q R+ ++ FTNL RDH+DYH + YF+AK+ LF Sbjct: 191 RRMADAGVDTVIMEVSSHAISQARIGALRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLF 250 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------ 288 L ++ A+I +D + + + + V H + Sbjct: 251 SRYLKEDGIAVIPSDSRQLQTEFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTET 310 Query: 289 -QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V ++ + +F L G F + N L C A+ I + E++ +L PGR E Sbjct: 311 DCAVRLADCQQMLEFQSGLVGRFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVE 370 Query: 348 FVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 V ++VDYAHT ++L+ +L + + G +I VFGCGGDRD+GKRP+MG Sbjct: 371 RVFATETPANAQPVVFVDYAHTPDALDKLLSTLGDVPHGDLIAVFGCGGDRDKGKRPLMG 430 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------------GFIEKG 443 +A LAD+ IV DDNPR+E E I AEI+ G+ G + G Sbjct: 431 AVAARLADVVIVADDNPRTEASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVG 490 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI A+ M +D++ +AGKGHE + G+K D L Sbjct: 491 DRRRAIDLAVHMACSKDIIAIAGKGHEPYQLGATGKK-FFDDRLQAGRAL 539 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 166/452 (36%), Gaps = 35/452 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR + G IFVA+ G DGH ++ Q +A GA +VV A P Sbjct: 568 VTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAAGAACLVVEKA--------RPDLTCPQ 619 Query: 93 LVVDNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++V +TR+ L A+ G ++ +TG+SGK+++ I S + Sbjct: 620 VLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGKTTIKEMTASIL-ASLWPAGAEY 678 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 P + + + P+ L + + + +S G + RL I + Sbjct: 679 PENVVLKTEGNFNNLIGLPLSLLP---LDNMHRAAVLEMGMNSPG-EIARLAEIAQPDIC 734 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H+ + + AK LF P +S ++ DD + E+ K Sbjct: 735 CVANVHAAHLSGLGSIEGVARAKEELFAH-APVDSILVVNLDDPHVVEMAKGYEQKKICY 793 Query: 268 LSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 I + + + + + GE V NAL AAG+ +A G Sbjct: 794 SLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLGEHNVSNALAAAGIALAAG 853 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + L R E + T+ I Y S+ L+ + T+ + I Sbjct: 854 ASPQQIALGLGSYKTPSKRLERIRTSCNWTIISDCYNANPASMSAGLRTLATVAGEKKIA 913 Query: 387 VFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G+ + +G +A +L+ D ++ + + + + G + Sbjct: 914 IVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGEFASFLQQAALNSGM--GKEQVLVF 971 Query: 443 GNRIEAI------RTAIEMLNKQDVLVVAGKG 468 + EAI A L ++D++ + KG Sbjct: 972 PS-KEAIIDWLQAYQADGGLGEKDIVFI--KG 1000 >gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FSC200] gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] Length = 487 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++A KGHE NG K+ Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIREILG 494 + +II++ G Sbjct: 466 DEREIIKKYAG 476 >gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] Length = 504 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 221/474 (46%), Gaps = 23/474 (4%) Query: 36 DSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 DSR I A +F A G+ DG +I +AI GA+A+V F N P L Sbjct: 27 DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEG----FDWNPEWNVPHL 82 Query: 94 VVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V + + A+ Y + + +AVTGT+GK+S ++ Q G + IG Sbjct: 83 GVMGLKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLG 142 Query: 152 T------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ TTP + L + L+ L + V V++EASS G+DQ RL+GI + Sbjct: 143 VTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPID 202 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNA 263 G FTN RDH+DYH +Y AK +LF+ K + + + + R Sbjct: 203 VGLFTNFTRDHLDYHHDMASYKAAKRKLFDWPGLKHAVLNLDDPMGRELATALKTRISLT 262 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + + + + + +I L G F N L G+ + Sbjct: 263 GYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGVLGVLL 322 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380 A GI + L L GR + +G + + +D+AHT +++E L +R + Sbjct: 323 AAGIHWDDAVRTLGDLLPPAGRMQQMGGKNAPL-VVIDFAHTPDAMEKGLATLRHVANER 381 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439 +G++ VFGCGGDRDQGKRP MG + + AD IVT DNPRSEDP++I +II G+ Sbjct: 382 NGKLWCVFGCGGDRDQGKRPQMGSV-SETADFVIVTSDNPRSEDPKEIMKQIISGMEKEP 440 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI A+ ++ DV+ +AGKGHET + G K D D + L Sbjct: 441 QVYEDRAMAILQAVRQASQNDVIFLAGKGHETYQEIK-GVKLPFADADHVALAL 493 >gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] Length = 500 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 168/494 (34%), Positives = 254/494 (51%), Gaps = 18/494 (3%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL + + + ++N ++ S +Q G F +VG DGH F AI +GA Sbjct: 3 KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 + +VV L D ++ +VV +TRK ++ A+ Y +++ + +TGT+GK Sbjct: 63 KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ V+ I + +G + IG I A+ + TTP L + + + V Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVV 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH LD R +F+NL +DH+DYH T +AYF AK RLF + P + Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI- 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + KE+++R A V++ G+ IH V VT+ V G F + Sbjct: 237 -CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYA 363 PL G+F V N + A G+ + +G + ++E LE+ +PGR E N+ G ++VDYA Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L +I +T GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+E Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414 Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP+ I +I+ G+ F + +R AI AI D +++AGKGHE +V + Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474 Query: 480 KKMSVDCDIIREIL 493 D + E L Sbjct: 475 LS-FDDRIVAAEEL 487 >gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phymatum STM815] gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum STM815] Length = 512 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 220/476 (46%), Gaps = 31/476 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +DSR I G +F+A DG FI AI +GA A++V + D + Sbjct: 30 HLHADSRKIAPGDVFLAY---AVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALM- 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V + AS YG ++ VTGT+GK+S +++ G Sbjct: 86 ----VAVPRLNELTGTIASAWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAI 141 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + + TTP L ++L L + G V++E SSH L Q R++G Sbjct: 142 IGTLGSGMPGQLVHTGFTTPDAPQLQRSLEQLRAAGAKAVAMEVSSHALHQGRVNGTAFS 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------R 259 G FTNL +DH+DYH T AY AK RLF P+ A+I ADD + ++ + Sbjct: 202 VGVFTNLTQDHLDYHGTFAAYEAAKARLFSW--PELKAAVINADDEAGRRMIASTNGHAK 259 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + I V A I+ + + D G F V N L Sbjct: 260 TIAYSLQPRADVQADASIVASNVRATTTGTAFHIASDWGNSDIEVNTLGAFNVSNLLGVL 319 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + + + KL V GR E +G + +DYAHT ++LE L +R Sbjct: 320 GALLASDVPFDAAVAQIAKLESVNGRMERLGGRVQNDEPLVVIDYAHTPDALEQTLTALR 379 Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I G++I +FGCGGDRD KRP+MG+IA AD +VT DNPRSEDP KI +I Sbjct: 380 PIADARGGKLICMFGCGGDRDATKRPLMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAA 439 Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ +R AI A+ ++DV+V+AGKGHE+ + G+K+ D D Sbjct: 440 GMKDASKARRIEDRASAILQAVRCAAREDVVVLAGKGHESTQEIM-GKKRAFSDQD 494 >gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] Length = 505 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 131/509 (25%), Positives = 228/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL D++ K +LI + +I+ V+ S+ + ++F A+ G + DGH FI Sbjct: 4 KLNDVLLKLDQDLIKYVK----GSLNLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ IV S N + VD+ RKF+S F++ Y + + + Sbjct: 60 MAIQKGSNVIVCSRDLDF------YSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ + + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + GV + +E++SHGLD RL + A FTN+G DH+++H T + Y N K+ Sbjct: 174 LSNMVKNGVQYAVLESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF+ + +I DD YS + + L F+ + Sbjct: 234 GLFQSVSDDAGFGVINLDDVYSSDFKNAIKKSFTYSLKNSQADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A + + ID +++ L + + GR + Sbjct: 292 EFYYKGIKYFANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + R+I VFG G+RD KR + G+I+ + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFAINRLISVFGSAGERDVAKRFLQGQISDIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ ++ D++PR E+ I +I GI + +R +AI AI + D++V Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N + + ++++ + Sbjct: 471 LGKGHESSIIYKN-REMFWNEQEVVKNAI 498 >gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] Length = 500 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 169/494 (34%), Positives = 255/494 (51%), Gaps = 18/494 (3%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL + + + ++N ++ S +Q G F +VG DGH F AI +GA Sbjct: 3 KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 + +VV L D ++ +VV +TRK ++ A+ Y +++ + +TGT+GK Sbjct: 63 KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ V+ I + +G + IG I A+ + TTP L + L+ + V Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVV 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH LD R +F+NL +DH+DYH T +AYF AK RLF + P + Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI- 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + KE+++R A V++ G+ IH V VT+ V G F + Sbjct: 237 -CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYA 363 PL G+F V N + A G+ + +G + ++E LE+ +PGR E N+ G ++VDYA Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L +I +T GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+E Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414 Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP+ I +I+ G+ F + +R AI AI D +++AGKGHE +V + Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474 Query: 480 KKMSVDCDIIREIL 493 D + E L Sbjct: 475 LS-FDDRIVAAEEL 487 >gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] Length = 689 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 149/488 (30%), Positives = 229/488 (46%), Gaps = 17/488 (3%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + +R ++ + ++ AG++F A+ G++ G + QA A GA ++ A Sbjct: 33 LELHGDDRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAAGVLTDPAGLAL 92 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 ++ +LV R+ L ++R+YG + + +TGTSGK++ A + + Sbjct: 93 IREDPEAADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALR 152 Query: 139 RSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G +G + LTTP L + + ++ +GV V +E SSH L Sbjct: 153 AAGRVVGLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALG 212 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253 R+DG G FTNL +DH+DYH+T YF AK RLFE P + D Sbjct: 213 RVDGCHFAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRA 272 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +V + V + G + ++ + +G + + PLPG + V Sbjct: 273 ADVAAQGAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVA 332 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL+A + +A G D + L + V PGR E V VDYAH ++E +L Sbjct: 333 NALLAVAMTVAAGTDVDTAVAGLAHVAV-PGRLEKVERGQE-FLAVVDYAHKPAAVEAVL 390 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + T GR+ VV G GGDRD KRP+MG A AD+ IVTDDNPRSE P IRA ++ Sbjct: 391 ATLGAQTRGRLAVVLGAGGDRDTEKRPLMGAAAARGADLVIVTDDNPRSEPPADIRAAVL 450 Query: 434 HGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G E G+R +AI A++ DV+++AGKGHE + +G K D Sbjct: 451 AGARSVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAGKGHEKGQEI-DGVKHPFDDR 509 Query: 487 DIIREILG 494 ++ E+L Sbjct: 510 QVLGELLS 517 >gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. novicida GA99-3549] gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida GA99-3549] Length = 479 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I+ + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------QFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKKYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIRE 491 + +II+ Sbjct: 466 DEREIIKN 473 >gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] Length = 500 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 164/495 (33%), Positives = 247/495 (49%), Gaps = 20/495 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL + + + ++N ++ S +Q G F +VG DGH F AI +GA Sbjct: 3 KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 + +VV L D ++ +VV +TRK ++ A+ Y HP +A+ G +G + Sbjct: 63 KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYD-HPSKDIALVGITGTNG 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTH 184 + + + ++ + G T+ D TTP L + + + Sbjct: 117 KTTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDV 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++E SSH LD R +F+NL +DH+DYH T +AYF AK RLF + P + Sbjct: 177 VAMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 DD + KE+++R A V++ G+ IH V VT+ V G F Sbjct: 237 --CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFD 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDY 362 +PL G+F V N + A G+ + +G + ++E LE+ +PGR E N+ G ++VDY Sbjct: 295 YPLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDY 354 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L +I +T GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+ Sbjct: 355 AHTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRT 413 Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EDP+ I +I+ G+ F + +R AI AI D +++AGKGHE +V + Sbjct: 414 EDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQ 473 Query: 479 EKKMSVDCDIIREIL 493 D + E L Sbjct: 474 VLS-FDDRIVAAEEL 487 >gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] Length = 492 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 67 SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + + Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 411 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++A KGHE NG K+ Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 470 Query: 484 VDCDIIREILG 494 + +II++ G Sbjct: 471 DEREIIKKYAG 481 >gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] Length = 485 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 150/502 (29%), Positives = 228/502 (45%), Gaps = 33/502 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ LI L + ++N + SR+++ G IFVAI G K DGH FI Sbjct: 1 MKLKTLISDITNSL--------EYASDIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI+ GA A+V + Y P + V + R+ L A LY + N++ Sbjct: 53 NEAISNGAVAVVGEAEYDCLP--------VPYIKVQDARQALGNLAKTLYCDPSKMHNMI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 +TGT+GK++ A V+ I Q + S S + + TTP + L K L Sbjct: 105 GITGTNGKTTTAYMVKHIFQTASESCSLFSTVSNFVNGTELMSTATTPDILELNKMLR-- 162 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +V +E SSHGL Q R++GI+ G FTNL DH+DYHQ + YFN K LF+ Sbjct: 163 -MSMDKNVVMEVSSHGLHQKRVEGIEFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLFKL- 220 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L K AII + + ++++ + N VLS G + L+ + ++ I Sbjct: 221 LKKNGEAIINSGCPWGRKLINQLKNKRQSVLSFGT-SENDDLQLLSTKDGVSKIRIQGSN 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + P+PG + NAL A G++ + +E VPGRFE + S Sbjct: 280 VKLEIKMPMPGNHNLQNALAAILCAYRAGVNVNDIKRAVESFPGVPGRFEEYYSQSVNF- 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +DYAHT + LE +L+ ++ + RI+ VFG G++D KR M I+ D I+T Sbjct: 339 -ILDYAHTPDGLENLLETVKKLNGNRIVHVFGFRGNKDMTKRLAMLDISAKYCDKIILTL 397 Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+ EK+ ++ G +R AI A + K D +V+ GKG E Sbjct: 398 DDLNGVALEKMILDLKKSVNYIGTNNIHLIIDRTRAIEYAWKNSIKGDRIVITGKGPELY 457 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 E D + I+ + Sbjct: 458 E--REFELPADSDAETIKYLFS 477 >gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] Length = 528 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 148/495 (29%), Positives = 226/495 (45%), Gaps = 21/495 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + I VS DS G +FV + G G F A+A GA A++ Sbjct: 31 LAPASAEDAAALNDLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLT 90 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131 + + TP+LV + R + ++ +Y ++ AVTGT+GK++ A Sbjct: 91 DADGAQ--IVHQTAPGTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAY 148 Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 F+ I G + + ++ TT L + ++ V S+EAS Sbjct: 149 FLDAILSAHVGGCMVAGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEAS 208 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH + HRLDGI + FTNL RDH+D+H+T + Y AK +LF + DD Sbjct: 209 SHAIVLHRLDGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGVV--CVDD 266 Query: 251 AYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306 + + A R ++ V + T+ + + PL Sbjct: 267 QWGAALAAEAPIEIDRVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPL 326 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365 PG V NA +A + I G+ +A L H +PGR + + VD+AHT Sbjct: 327 PGLVNVQNAALALVMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHT 386 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E+ LK +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP Sbjct: 387 PDAMELALKAVRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDP 446 Query: 426 EKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + IR I+ G+ E R +A+R +E+ D ++V GKGHE + Sbjct: 447 QLIRNAILEGVRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA- 505 Query: 478 GEKKMSVDCDIIREI 492 GE D ++ E Sbjct: 506 GEFIRYNDAPVMAEA 520 >gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 11379] gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] Length = 522 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 141/499 (28%), Positives = 227/499 (45%), Gaps = 22/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL ++L + + + ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 17 LGELADRLGVETAGSGD--VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVA 74 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+LV +N R + A+ +YG+ + +TGTSGK++ Sbjct: 75 VLTDPTGAER----AAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTT 130 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G + IG + TTP L + + +GV V++ Sbjct: 131 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 190 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF Sbjct: 191 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNF- 249 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306 DD Y + ++ + + G+ H + V T + +G+ PL Sbjct: 250 -DDEYGRRLITESGVPVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N L A G+ + + + + VPGR E V VDYAH + Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 367 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++E +L+++R +T G++ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 368 DAVESVLRSLRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 427 Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G E+G+ AI A+ D ++VAGKGHE V +G Sbjct: 428 AILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDV-HG 486 Query: 479 EKKMSVDCDIIREILGLIL 497 + D ++ + L Sbjct: 487 VVRAFDDRKVLHAAIERSL 505 >gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] Length = 494 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 219/477 (45%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + ++++DSR ++G IFVA G D H F I QG + IVV S ++ Sbjct: 20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V T + SL A L+ VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --DVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DDA+S+ + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + +++ P G+F + N + A Sbjct: 253 PYEIFTYGIDN--DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + GI ++E ++ L V GR E + N + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + +E+ G Sbjct: 370 KRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHDN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AIE+ D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9303] gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9303] Length = 538 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 139/477 (29%), Positives = 218/477 (45%), Gaps = 19/477 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + G +F+ + G + DG F QA+A A + + + Sbjct: 59 VSCDSRAVARGCLFLGLPGEQVDGGSFWRQALAA--GAEAAVIGPAAAALRPPGPKDAVV 116 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V + ++ A+ + + + + VTGT+GK++ ++ + G S+ G Sbjct: 117 VVSEPVAAWVGQLAAAFWQQPSSRLALIGVTGTNGKTTTTHLIEHLSVAVGRSTALFGTL 176 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + +++ TT L L+ G ++E SSH L+Q R+ G + F Sbjct: 177 VNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGAMEVSSHALEQQRVAGCRFAGAVF 236 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSKEVMKR----AHNA 263 TNL +DH+DYH + +AYF AK +LF L + A++ D + + +R + Sbjct: 237 TNLTQDHLDYHSSMEAYFEAKAQLFAPPLLESGSAKAVVNIDGPWGARLAQRLGDTCWRS 296 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + + ++ Q + + F PL G F + N L A G+ + Sbjct: 297 SLAEGVLQRADAELTMTELTMSSAGVQGRLISPCGEGWFDSPLLGRFNLMNLLQAVGVLL 356 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTI 379 G+ L+L+ + VPGR E V + + VDYAHT + LE L R Sbjct: 357 QQGLPLPLLLKAIADFRGVPGRMERVLIPAADASQVPTVLVDYAHTPDGLENALTASRPF 416 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 TS + VFGCGGDRD+GKR M IA LAD +VT DNPR+EDP++I +++ GIP Sbjct: 417 TSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQILVDVVAGIPQG 476 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI DV++VAGKGHE I+ K D + L Sbjct: 477 TALTVEVDRAVAIALAIAEAGPGDVVLVAGKGHEDYQILGTS-KVHFDDREEAERAL 532 >gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi N40] Length = 508 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 135/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ IV S S+ + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I N E + ++++ + Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498 >gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] Length = 496 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 124/512 (24%), Positives = 228/512 (44%), Gaps = 36/512 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++I+ + +++ +++++ +FV I G D H I Sbjct: 1 MKLIENTDGLDIDIISG-------KFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 + + GA+A+VV R + ++ VD+TR L+ ++ +G + + + Sbjct: 54 DEIVKLGAKAVVVERNIK--------RDDICVIKVDSTRAALARLSAAYFGHPAKKMKII 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT GK++ + ++++ +++ T+ + TTP L K Sbjct: 106 GITGTKGKTTSSYMLKKLLEQNAKVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKECL 165 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G +V +E SS + R++GIK G FTN+ DHI + F + Sbjct: 166 DAGCEYVVMEVSSQAVMLKRIEGIKFYIGIFTNISPDHIG--PDEHKDFTEYLMYKSLFF 223 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ ADD +S +++++ + ++ + K Sbjct: 224 KQCEKTVVNADDEHSAYILEQSTSDEKYEFGKCGDFVINNINYISKKDFLGTSFCISCSK 283 Query: 299 DFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + +PGEF VYNAL A I + A++ L+ + V GR E Sbjct: 284 NVKDKYRVSEVGDILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIKV-NGRMEV 342 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +S +I +DYAH + S E ++K +R R++VVFG GG+R + +R MG+I Sbjct: 343 A-YSSHDIKIIIDYAHNAISTESLIKTLRRYEPKRLVVVFGSGGNRSKDRRYSMGEICGK 401 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +AD ++VT DN R E E I A+I+ + +I +R EAI A+E D++ + Sbjct: 402 MADFSVVTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKPGDIIAI 461 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKGHE + +G + +D +++ E L + Sbjct: 462 IGKGHEDYQEI-DGVRHHFLDREVVEECLEKM 492 >gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] Length = 519 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 146/506 (28%), Positives = 223/506 (44%), Gaps = 24/506 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ + LI + + + + ++H+ G +F + G + G F Q Sbjct: 23 LATLLARAGARLIAD----RPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+A GA A++ + + D A + P+LV + R L A+ +YG+ + +L V Sbjct: 79 ALAAGAAAVLTDPSGA--DRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGV 136 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK++ + V + +G ++ IG T + + TTP L L+ + Sbjct: 137 TGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLE 196 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTHV +E SSH L R++G + G+FTNL +DH+D+H+ + YF AK LF+ Sbjct: 197 RGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDGRST 256 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 E + + + G + +Q T+ Sbjct: 257 TEVVVV-----DSAWGQALLTPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLGPDGL 311 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 V A +A A + VPGR E V + Sbjct: 312 SRAAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLAAVEVPGRMERV-YLGQEFTAV 370 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++ L +R T GRII V GCGGDRD KRP+MG+ A+ +D+ IVTDDN Sbjct: 371 VDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPMMGEAAVRRSDLLIVTDDN 430 Query: 420 PRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 PRSEDP IRA ++ G +E +R EAI A+ + D++++AGKGHET Sbjct: 431 PRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDIVLIAGKGHET 490 Query: 472 VHIVTNGEKKMSVDCDIIREILGLIL 497 G D D + + L Sbjct: 491 GQE-AQGVVHPFSDRDELEAAIRKRL 515 >gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 494 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPCEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] Length = 505 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 162/486 (33%), Positives = 238/486 (48%), Gaps = 30/486 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 P + +++ +++ DSR + G +FVA+ G + G A QGA AI+ A Sbjct: 20 GAPALPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILWDEA 79 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134 + S P+L + R L L+G P + +AVTGT GK+SV+ Sbjct: 80 EAAPALS------IPVLHLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFA 133 Query: 135 QICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ G+ + +G T +D TTP I L + L++L++ G +S+EASSHG Sbjct: 134 GALEQLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHG 193 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L+Q R+ G+ + T LG DH+D+H +QQAY +AK RLF P A++ ADDA Sbjct: 194 LEQGRMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARLFAW--PGLETAVLNADDALG 251 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +++ S + ++V A + + T+ V G+ + L G FQV Sbjct: 252 QRLIRETTAEHILTYSAVGASADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVG 311 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A+G ++ + +L VPGR E G + VDYAHT +L L Sbjct: 312 NLLATLAALRALGHSWPAAVDAVSRLRGVPGRMERF-ELPSGALLVVDYAHTEQALAAAL 370 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R T+GR+I VFGCGGDRD KRP MG+ A AD IVTDDNPRSEDP IRA ++ Sbjct: 371 DALRPHTAGRLIAVFGCGGDRDVTKRPAMGRAASARADQVIVTDDNPRSEDPAAIRAAVL 430 Query: 434 HGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 G +R EA R + DV+++AGKGHET V + Sbjct: 431 AGC-------DRPEACRELGDREAAVRAAVAEAGPGDVILLAGKGHETTQQVGT-QFYPF 482 Query: 484 VDCDII 489 D ++ Sbjct: 483 SDRELA 488 >gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis NE061598] Length = 479 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++A KGHE NG K+ Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIRE 491 + +II+ Sbjct: 466 DEREIIKN 473 >gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] Length = 521 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 167/503 (33%), Positives = 248/503 (49%), Gaps = 28/503 (5%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D L + ++ S DS+ I AG +F A+ G + G F A Sbjct: 4 DLQTLATIGGGRVIGDDSVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTE---AA 60 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 AI+ A A R PI+VV++ R L L A+ +Y E+ +L VTGTSGK+ Sbjct: 61 AILTDEAGLQHLQEAGERR--PIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + ++ +G IG T T + +LTTP L + + + +GVTHV Sbjct: 119 TTSYLLEAGLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVV 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L+ R+ G + G FTNL +DH+D+H T + YF AK LF+ S A+I Sbjct: 179 MEVSSHALELGRVRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDG-AQAASAAVI 237 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKD 299 DD + K + ++ ++S + + K+V + Q V +S G+ Sbjct: 238 CVDDDWGKRMAQQVAGKPLTLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGET 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F P+PG+F + NA +AAG+ A+G+D+ L +E++ V PGR E + + Sbjct: 298 YSFELPMPGKFNIANAALAAGMAAAVGVDTETFLNGVERVAV-PGRME-SISRGQDFVAV 355 Query: 360 VDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH ++ +L +R T GR+ VV G GGDRD KRP+MG A + AD+ +VT Sbjct: 356 VDYAHKPAAIAAVLDTLRGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVT 415 Query: 417 DDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPRSEDP IRA ++ G E G+R AI +E D ++V GKGHE Sbjct: 416 DDNPRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKGHE 475 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 IV + E D + + L Sbjct: 476 VGQIVGD-ETLHFDDREEVARAL 497 >gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545] Length = 614 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 136/507 (26%), Positives = 226/507 (44%), Gaps = 22/507 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++L +F ++ + + +++ ++ DSR + G +FV + G DGH F Sbjct: 90 LRELF--EFGDVAVNEWTHLGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALD 147 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 + A + + P +VV + K L A+ YG + + V Sbjct: 148 ------AVAAGAVAVVCEGEIEGLTDEIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGV 201 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ +Q I + +S +G I + TTP + + L+ + Sbjct: 202 TGTNGKTTTTHLIQAILAANDVSCGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMID 261 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G ++E SSH L+ R+D FTNL RDH+D+H + + Y AK +LF +L Sbjct: 262 AGAGACAMEVSSHALELGRVDECDFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTD 321 Query: 240 K-ESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A + ++ R + + V + +T Sbjct: 322 PARQRAKDRDTFDNAAYFIEAAGGGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLT 381 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I +F+ + + G+ V N A + +A+ I ++ +E++ VPGR E + Sbjct: 382 IQTPVGEFEAVCGVVGKINVTNIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELI-DE 440 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT ++L+ + ++R +I VFGCGGDRD KR MG+IA +DI Sbjct: 441 GQPFSVIVDYAHTPDALKRAITSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDI 500 Query: 413 AIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT+DNPR+EDP KI + + + +R AIR AI M + D +++ GKGHE Sbjct: 501 VFVTNDNPRTEDPYKILDDTMQLQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHE 560 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 IV G K D R+ L ++ Sbjct: 561 DY-IVVGGNKHWFDDRVEARDALRKVV 586 >gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1] gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseiflexus sp. RS-1] Length = 509 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 142/506 (28%), Positives = 228/506 (45%), Gaps = 38/506 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +++ L + P+ +I V DSR + G +FVA G DGH +I Sbjct: 1 MRLHEILK----HLCEPAHMPPV---NPEIAGVVYDSRAVTPGALFVAYRGFHTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 PQA+ +GA A+V D + R P L V N R L+ A+ YG + + Sbjct: 54 PQALERGAAAVVYE------DPAWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALS 175 VTGT GK++ + G + +G + D+R +TP + L Sbjct: 108 GVTGTDGKTTTTFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLR 167 Query: 176 YLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN----- 228 ++ G ++ +EA+SH L +RL G FTN+ ++H+D+H T + Y Sbjct: 168 DMAEAGCSYAVIEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARL 227 Query: 229 ----AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 A+ + A++ ADD + + + A + R+ + + + V + Sbjct: 228 FEMLAEFNDAAAPFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRS 287 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + ++ D L G+F V+NAL A + A G+ L LE++ V G Sbjct: 288 TRDGLRFRVTTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGVRG 347 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + + + VDYAHT + E + + +R +T G++I VFG G+RD+ KRP+ G+ Sbjct: 348 RMERI-EAGQPFTVLVDYAHTPGAFEKLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQGE 406 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEML 456 IA D+ IVTD++PR ED I AEI G + +R AIRTA Sbjct: 407 IAGRFCDLVIVTDEDPRLEDRAAIIAEIAAGAEAVGKRIGETCLCIPDRALAIRTAFAYA 466 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKM 482 D++++ GKGHE I Sbjct: 467 RPGDIVLLLGKGHEGSIIYGTTPVPW 492 >gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] Length = 492 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 136/502 (27%), Positives = 215/502 (42%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ L+ +I ++ DSR G +FV IVG + D H F Sbjct: 1 MKLEQLMEGVPFTLVQGSLGT-------EIADIIYDSRKAAPGLLFVCIVGTQRDSHTFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+G A+V+ L ++ V+++R ++L ++ L+G + + Sbjct: 54 ADCAAKGVSALVIQHDIDLSTLP-----GVTVVKVESSRYAMALMSANLFGNPARQMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG D TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ G+ G FTNL DHI + + + Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD + +++ K+ H+ V V G Sbjct: 229 RCDVGVVN--IDDENTAALLEGHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTG 286 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K + D +PGEF VYNAL A + +G+ + VV GR E V + Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGL-PDAAIHDGLGKCVVKGRVELVPISK-KF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +AD +I+T Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +DN R E E I A+I G+ F+E +R++A+ A++ + D++ V GKGHE Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G K ++ +++ E Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485 >gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira interrogans serovar Lai str. 56601] gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira interrogans serovar Lai str. 56601] Length = 504 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 159/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIF-VA--IVGNKEDGH 57 MKL L+ K FPE+ + +I + SDSR IF VA I G+K+ Sbjct: 1 MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKKK-- 56 Query: 58 LFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115 FI A A I++ + ++ D + S+ L + + + AS L G + Sbjct: 57 EFISNA---KASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 113 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + I+AVTGT+GK+S+ + + + + G++ IG D TTP L Sbjct: 114 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 173 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +G+T V +EASSHGL R++GI + AG FTNL +DH+D+H + YF +K R Sbjct: 174 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 233 Query: 233 LFEE-LLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LFE K + A++ ++ + + ++ + + + Sbjct: 234 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 293 Query: 290 QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + ++ L G F V N +A I IG+D + LEK+ +PGRF+ Sbjct: 294 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 353 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R VDYAHT ++LE I++++R +I +FGCGGDRD+ KRP M +IA + Sbjct: 354 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 413 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 L+D I+T DNPR+E PE I EI G + + +R +AI I L + L+V Sbjct: 414 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 473 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 AGKGHE I+ EK+ D + +++ GL Sbjct: 474 AGKGHEEYQIIG-KEKRHFSDVEEVQKAFGL 503 >gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 506 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 159/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIF-VA--IVGNKEDGH 57 MKL L+ K FPE+ + +I + SDSR IF VA I G+K+ Sbjct: 3 MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKKK-- 58 Query: 58 LFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115 FI A A I++ + ++ D + S+ L + + + AS L G + Sbjct: 59 EFISNA---KASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 115 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + I+AVTGT+GK+S+ + + + + G++ IG D TTP L Sbjct: 116 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 175 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +G+T V +EASSHGL R++GI + AG FTNL +DH+D+H + YF +K R Sbjct: 176 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 235 Query: 233 LFEE-LLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 LFE K + A++ ++ + + ++ + + + Sbjct: 236 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 295 Query: 290 QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + ++ L G F V N +A I IG+D + LEK+ +PGRF+ Sbjct: 296 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 355 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R VDYAHT ++LE I++++R +I +FGCGGDRD+ KRP M +IA + Sbjct: 356 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 415 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 L+D I+T DNPR+E PE I EI G + + +R +AI I L + L+V Sbjct: 416 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 475 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 AGKGHE I+ EK+ D + +++ GL Sbjct: 476 AGKGHEEYQIIG-KEKRHFSDVEEVQKAFGL 505 >gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED133] gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 494 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 129/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. novicida U112] gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella novicida U112] gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] Length = 479 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 221/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I+ + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------QFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKKYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AI+ Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAIV 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I G I +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 407 NIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465 Query: 484 VDCDIIRE 491 + II+ Sbjct: 466 DERKIIKN 473 >gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp. tularensis FSC033] Length = 484 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127 ++ S + + N ++ LS A Y P+NI+ +TGT+GK+ Sbjct: 67 SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + + Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E E Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 411 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G I +R +AIR +IE N+ D++++A KGHE NG K+ Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 470 Query: 484 VDCDIIRE 491 + +II+ Sbjct: 471 DEREIIKN 478 >gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus RF122] gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus RF122] Length = 494 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + + + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 491 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 141/503 (28%), Positives = 223/503 (44%), Gaps = 26/503 (5%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL DL+ LI E I +S DSR IQ +F + G DGH Sbjct: 1 MKLVDLLDVKNQIYHLIQGT------IEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQ 54 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 F A +GA +V S ++ P++ V++ K ++ A R Y ++ Sbjct: 55 FAKMAEEKGAVCLVASKHVDVK---------IPVVYVEDVIKTMAFLAMRFYHDPSGSMS 105 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALS 175 + VTGT+GK++ ++ + +++ S IG TTP + L K+L+ Sbjct: 106 LIGVTGTNGKTTTTHIIRHLFEKNKKSCGMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLA 165 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + +GV + E SSH L R+ + FTNL +H++ H T Y AK LF Sbjct: 166 KMKEEGVFICTSEVSSHALVMGRVQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFA 225 Query: 236 E-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + I D +V+ NA S + K + + +K + T+ Sbjct: 226 QLGSGNNGKIAILNKDDTYAKVIASRCNATIWYYSTKDPSAEFYAKDMVYLASKTEFTLV 285 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G ++ + PL GEF V NAL A A+ +E L V GR + N Sbjct: 286 FQGLEYPVISPLIGEFNVQNALAALAAYYALERHLEKGIEALSSFSGVEGRMQ-TIENDL 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIA 413 G VD+AHT + LE + ++ + RII + G G+RD R +G+IAL+ +D Sbjct: 345 GIHAIVDFAHTPDGLEKAMAALKKLNHKRIITMIGHDGGNRDNSIRQDLGRIALEYSDYV 404 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + T +NPR EDP KI E+++G+ + +R +AI + + K D+L GKGHE Sbjct: 405 VFTSENPREEDPMKIMKEMVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTGKGHEP 464 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 ++ EK + ++E L Sbjct: 465 YQLIGC-EKIPFHEAQFVKEALE 486 >gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MW2] gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus MW2] gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 494 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] Length = 522 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 159/482 (32%), Positives = 239/482 (49%), Gaps = 22/482 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ V+ ++ Q G +FVA+ G K G + P A A+GA A++ +A + Sbjct: 36 RVSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVG--- 92 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +L R L ++ +YG ++ VTGT+GK++ ++ + Q +G + Sbjct: 93 EIAVLTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGV 152 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T S + + TTP L+ ++ GV V +E SSH LD R+DG + Sbjct: 153 IGTVETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTRFA 212 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK------ 258 A FTNL +DH+D+H ++YF AK +LFE P + A++ DDA+ + + + Sbjct: 213 AAGFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGA 272 Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNAL 316 R A V + G + + L + H Q+V + F L G NAL Sbjct: 273 GRGAQAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANAL 332 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A GL A G++ L VPGR E V VDYAH +L +L + Sbjct: 333 LALGLAEAAGLEVGPELLRGWASISVPGRLERVDAGQ-DFLAVVDYAHKPEALVKVLHAL 391 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GRI VV G GGDRDQGKRPIMG+ A++ +VTDDNPR+EDP IRA+++ G Sbjct: 392 REHTEGRIAVVVGAGGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQVLAGA 451 Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 E G+R EAI A+ D ++VAGKGHET + NG K+ D +++ + Sbjct: 452 QESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKGHETYQEI-NGVKQPFDDREVLVQ 510 Query: 492 IL 493 + Sbjct: 511 AI 512 >gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus aureus subsp. aureus ST398] Length = 494 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 129/481 (26%), Positives = 223/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 + +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QPLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis C231] gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis 1002] gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis I19] Length = 503 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 154/498 (30%), Positives = 234/498 (46%), Gaps = 19/498 (3%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L ++ I E+S DS+ + G +F A+ G + G + A A Sbjct: 10 TLGFLAALTGGELHGDKDIVIEEISLDSQELPQGGLFAALPGTRSHGAKY---AQETQAA 66 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 AI+ +A + + P LVV+N R L ++ +YG+ + I+ +TGTSGK+ Sbjct: 67 AILTDAAGAEILRESG--DTRPRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKT 124 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + ++ +G S IG T T + +LTTP L K + + +QGVTHV Sbjct: 125 TTSYMLEAGLINAGKSVGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVV 184 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ A FTNL +DH+D+H T + YF AK LF+ + + Sbjct: 185 MEVSSHALSLGRVSATHFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKTV 244 Query: 247 YADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLF 304 D + ++++R+ V + + Q+ ++ E + Sbjct: 245 ICIDEPWGLQMLERSGAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVDL 304 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+PG F V NA +A GL ++GID VPGR E V + VDYAH Sbjct: 305 PIPGAFNVANAALAIGLASSVGIDLD-RFVAGLTAVSVPGRMERV-NRGQDFLAIVDYAH 362 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++ +L+ +R +GR+ +V G GGDRD+ KR IMGK + AD+ IVTDDNPRSED Sbjct: 363 KPAAVAAVLEAVRRQAAGRVAIVVGAGGDRDRSKRAIMGKESALRADLVIVTDDNPRSED 422 Query: 425 PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P IR I+ G E G+R EAI+ A+ D +++AGKGHE ++ G Sbjct: 423 PALIREAILTGAQKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKGHEVGQLIQ-G 481 Query: 479 EKKMSVDCDIIREILGLI 496 D + + L I Sbjct: 482 INHHFDDKEELAIALEEI 499 >gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 545 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 160/501 (31%), Positives = 229/501 (45%), Gaps = 21/501 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L ++ + W I+ V ++R + G +F A+ G + G F Sbjct: 19 LHELARIAGADVASSADN---GWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF--- 72 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A A AI+ D P+LVVD+ R L ++ +YG + + V Sbjct: 73 AAESPARAILTDREG--LDIVEAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGV 130 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK++ +++ +G IG T T LTTP L + +++ Sbjct: 131 TGTSGKTTTTYLLERGLIAAGAQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAA 190 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTHV +E SSH L R+DG A FTNL +DH+D+H T YF AK F+ P Sbjct: 191 EGVTHVVMEVSSHALSLGRVDGTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSP 250 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298 + A + D E M + RV + G +G + N Q + + ++G+ Sbjct: 251 VAASASVVCVDDEWGERMAELASHPLRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQ 310 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 +F PLPG F V NA +A L +G D + LE V PGR E + Sbjct: 311 THEFTLPLPGAFNVANAALATALARVVGADMPQFVRGLENAAV-PGRMERIDAGQ-DFVA 368 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++ +L+ +R GRI + G GGDRD KR +MG+ A AD+ IVTDD Sbjct: 369 VVDYAHKPAAIAAVLETLREQVDGRIGIAVGAGGDRDTTKRAVMGQQAATRADLVIVTDD 428 Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 NPR+EDP IRA ++ G E G R EAI + D +VV GKGHE Sbjct: 429 NPRTEDPAAIRAAVLRGAREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVGKGHEVG 488 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 IV + D + +R L Sbjct: 489 QIVGD-TTHHFDDREEMRRAL 508 >gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Megasphaera genomosp. type_1 str. 28L] Length = 499 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 156/500 (31%), Positives = 240/500 (48%), Gaps = 25/500 (5%) Query: 9 KDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K EL Q+S + ++ +++DSR +Q G +FV + G DG F QA A+ Sbjct: 2 KTIEELCGQVSATHEVRGDARVQVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAAK 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A++ + L D T ++V + + Y + + + VTGT+ Sbjct: 62 GAVAVLTTEPLPLPD-------GTVQIIVPDIHAAVEEMVPFFYDYPGKKMRMIGVTGTN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + I + +G +G + TTP + L + L+ + ++G+T Sbjct: 115 GKTTTTHIIAHILRTAGYHVGVLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGIT 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV +E SSH L R+ GI+ FTNL +DH+D+H+T + Y AK +LF L Sbjct: 175 HVVMEVSSHALALQRVAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPV 234 Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D +M++A + + + + ++ D Sbjct: 235 KKGKTAVLNRDDPWSVLMRKACGTAEVLTYGTEREASLRGTHLQVALKHSAFDVTGPFGD 294 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G F VYN L A G A G+D + + ++ H VPGRFE V + I Sbjct: 295 MHLQMNITGLFNVYNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELV-EAGQDFAIV 353 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDY+HT +SLE L R + +IIVVFGCGGDRD+ KRPIMG+IA ADI +VT DN Sbjct: 354 VDYSHTPDSLEKALTTARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDN 413 Query: 420 PRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 PRSE+PE I AE+ G+ + +R AIR A+ + N D++++AGKGHET Sbjct: 414 PRSENPEAIVAEVAAGVKEALQPGQQYEVLTDRRRAIRRAVALANTGDMVLIAGKGHETY 473 Query: 473 HIVTNGEKKMSVDCDIIREI 492 I+ + + D + R Sbjct: 474 QILKD-KTIHFDDREEARNA 492 >gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] Length = 508 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 138/512 (26%), Positives = 229/512 (44%), Gaps = 32/512 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +++ K +LI + + +I V+ S+ + ++F A+ G DGH FI Sbjct: 4 KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117 AI +G+ IV S S+ + VD+ RKF+S F++ Y + + + Sbjct: 60 IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 + VTGT GKSSV ++ + ++ G+ I + S R +TP + Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173 Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + V + +E++SHGLD RL + A FTN+G +H+++H T Q Y N K+ Sbjct: 174 LCNMVKNEVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LF + +I DD YS + + L F+ + Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350 +G + L G F V N + A L I ID +++ L + + GR + Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAHT + + + + R+I VFG G+RD KR + G+IA + Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464 D+ I+ D++PR E+ I +I GI +E +R +AI AI + D++V Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIRE-ILGL 495 GKGHE+ I N E + ++++ IL L Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNTILSL 501 >gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 132] gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 493 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus N315] gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH9] gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus 04-02981] gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 494 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 494 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 223/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ V I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T + Y +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 509 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 143/476 (30%), Positives = 215/476 (45%), Gaps = 34/476 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +SSDSR I AG +F A G+ DG FI AI +GA A+V + + +A + P+ Sbjct: 21 LSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAA----DFPL 76 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + A+ YG+ +A+TGT+GK+S + ++ R IG Sbjct: 77 LAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGTL 136 Query: 151 ST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T + TTP I L + L L G + +++EASS GLDQ RL+G+ + Sbjct: 137 GTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIGLDQGRLNGLPV 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN RDH+DYH Y AK LF++ + A++ DDA ++ Sbjct: 197 QVALFTNFTRDHLDYHGDMATYEAAKTALFDQPGLQH--AVLNLDDAMGLRLLAHLQRTA 254 Query: 265 CRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ GY + + + H + L G F V N L Sbjct: 255 PQLALTGYTLTDLQPAGITVLRAGDIRSSHAGTSFQLMTAAGTMLVRTRLVGSFNVSNVL 314 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G+ +A +++ +E L VPGR + G + +DYAHT ++L+ L + Sbjct: 315 GIIGVLLAQDCPLRAIVDAIETLTAVPGRMQQFG-GQDAPLVVIDYAHTPDALDKTLAAL 373 Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + G++ VFGCGGDRD GKRP MG +A AD I+T DNPRSE I A+ + Sbjct: 374 QQVAAQRHGKLWCVFGCGGDRDPGKRPQMG-LAALAADEIIITSDNPRSEVAAAIIAQTL 432 Query: 434 HGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 G + +R AI A+ DV+++AGKGHE + + Sbjct: 433 QGTDERADSHAVPLVIEDRAAAILWAVRHAANADVILLAGKGHENYQEIRGKKLPF 488 >gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] Length = 508 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 131/488 (26%), Positives = 216/488 (44%), Gaps = 27/488 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S Sbjct: 21 KGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF--- 77 Query: 83 SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 N + VDN RKF+S F++ Y + + ++ VTGT GKSSV ++ + + Sbjct: 78 ---YSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134 Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G+ I + R +TP + LS + V + +E++SHGL Sbjct: 135 KKGIKVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGL 194 Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 D RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 195 DLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + L F+ + +G + L G F V Sbjct: 255 YADFKNAVKKSFTYSLKSNKADFFVSFIDEKIDST--RFEFYHKGVKYSANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIILCDEDPRGENGMCIIKD 431 Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I GI + +R AI AI + D++VV GKGHE+ I N + + Sbjct: 432 IAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESSIIYKN-RELFWNE 490 Query: 486 CDIIREIL 493 +I++ + Sbjct: 491 QEIVKNAI 498 >gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 494 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + + + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Kitasatospora setae KM-6054] Length = 514 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 149/499 (29%), Positives = 225/499 (45%), Gaps = 22/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E L + ++ ++ V+ DSR ++ G ++VA G G F A A GA A Sbjct: 22 LAEAARLLGLAGVEGP--EVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVA 79 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 ++ + P+LVVD+ R+ + A+ +YG E + + +TGT+GK++ Sbjct: 80 VLTD----AAGAELAAAAGVPLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTT 135 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + V+ + +G IG + TTP L L+ + G V + Sbjct: 136 TSYLVEGGLRGAGRLPGVIGTVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVM 195 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R DG+ F NL +H+D+H + Y+ AK RLF++ + A Sbjct: 196 EVSSHALVYGRTDGVVYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQGKSRRGVANR- 254 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPL 306 DD+Y + + A + G V + + + PL Sbjct: 255 -DDSYGRRLAGEARIPMTTFSAAGDPAADWRAVDVRPGPSGSTFRVLGPNGEQADAAVPL 313 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V NAL A + G++ A + + + VPGR E V VDYAH Sbjct: 314 PGLFNVSNALGAITALVVAGVELADAVAGVAAVPGVPGRLEEVDAGQ-DYVAVVDYAHKP 372 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L +L ++R +T GR+ VV GCGGDRD KR MG IA LAD A++T DNPRSED Sbjct: 373 DALSSVLASLREVTKGRLHVVVGCGGDRDPYKRGPMGAIAARLADTAVLTSDNPRSEDAL 432 Query: 427 KIRAEIIHGIPGFIE--------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G E +R EAI A+ + D ++VAGKGHE V G Sbjct: 433 AILATMLSGAAEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKGHELGQYVK-G 491 Query: 479 EKKMSVDCDIIREILGLIL 497 E + D ++R + I+ Sbjct: 492 EVRPFDDRQVLRTAIEQIM 510 >gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] Length = 508 Score = 265 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 129/488 (26%), Positives = 217/488 (44%), Gaps = 27/488 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S Sbjct: 21 KGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF--- 77 Query: 83 SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 N + VD+ RKF+S F++ Y + + ++ VTGT GKSSV ++ + + Sbjct: 78 ---YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134 Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G+ I + R +TP + LS + V + +E++SHGL Sbjct: 135 KKGIKVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGL 194 Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 D RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 195 DLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + L F+ + +G + L G F V Sbjct: 255 YSDFKNAVKKSFTYSLKSNKADFFVSFIDEKIDST--RFEFYHKGVKYSANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA + +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADNYSDLIILCDEDPRGENGMCIIKD 431 Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I GI + +R AI AI + D++VV GKGHE+ I N + + Sbjct: 432 IAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESSIIYKN-RELFWNE 490 Query: 486 CDIIREIL 493 ++++ + Sbjct: 491 QEMVKNAI 498 >gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] Length = 494 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 220/477 (46%), Gaps = 24/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + ++++DSR ++G IFVA G D H F I QG + IVV S ++ Sbjct: 20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEG----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V T + SL A L+ VTGT+GK+S+A+ + I ++ +S Sbjct: 75 --DVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + TTP + L K + G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK E L KE ++ DDA+S+ + Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYLASVT 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + +++ P G+F + N + A Sbjct: 253 PYEIFTYGIDN--DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMI 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + GI ++E ++ L V GR E + N + +DYAHT++ + ++ ++ Sbjct: 311 AVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 ++I + G G+RD K P MG +A AD I T DNP ++DP+ + +E+ G Sbjct: 370 KRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHDN 428 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++E +R E IR AIE+ +D +V+A KG E I+ K D +++GL Sbjct: 429 YVEFEDRAEGIRHAIEVAEPEDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 494 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] Length = 535 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 141/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%) Query: 2 KLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L +L+ L+ P + +I + DSR G I+ A G EDG F Sbjct: 6 RLSELLEFSSLAHTLVFLKDGRPFPLPDIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDF 65 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + A+ +GA A+V + P +VV+ R+ +L +G + Sbjct: 66 MDNALEKGAAAVVTDR------LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASALKV 119 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKAL 174 + VTGT GKS+ ++ Q+ + G+ + + S + R +TP L L Sbjct: 120 IGVTGTDGKSTTIEYLWQLLRGQGVRAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHSFL 179 Query: 175 SYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S G++ V +E +SH L + RL GI +T + +H+++H + + Y +AK+ Sbjct: 180 SSCRDHGLSIVILETTSHALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAKLN 239 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQV 291 L LLP I + + + + G + Sbjct: 240 LARRLLPGSPLVIPHDNARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCISA 299 Query: 292 T--------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHL 336 T I+ + + FP P F + NAL AA + I I ++ Sbjct: 300 TVLGMEPEQLAFTFAINDKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIAQF 359 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRD 395 EKL V GR NS G + +D+AHT+++ +++ I R I VVFG G+RD Sbjct: 360 EKLSPVRGRA-IPVPNSLGVTVLIDFAHTADAFAHVMEEISRVHPKADITVVFGAAGERD 418 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEA 448 KR MG A I+TD++PR+E E IR +I GIP + +R A Sbjct: 419 TTKRAPMGAQAARWCSRIIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTILRIADRKRA 478 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 IR A+ LN+ DVL++ GKGHET NG K + RE L + Sbjct: 479 IREAVANLNRGDVLLLLGKGHETTIEYENGRKIPWDEMREAREALAV 525 >gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 509 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 154/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%) Query: 10 DFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQ 66 EL + +F ++ +I+ + DS + IF A+ G+++ G F A Sbjct: 4 TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 63 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A++ + P L+VD+ R+ L + +S +YG ++ + VTGTS Sbjct: 64 GALAVLTDRDGAT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTS 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + +++ +G IG T T +LTTP L K + GVT Sbjct: 122 GKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVT 181 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242 HV +E SSH L R+ G +FTNL +DH+D+H T + YF+AK F P Sbjct: 182 HVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 241 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ DD + + + A NA + L V + + + Sbjct: 242 HQVVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPV 301 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG F V NA +A + G+D + ++ V PGR E + + VDY Sbjct: 302 TLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQVAV-PGRMERI-DEGQDFLAVVDY 359 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH ++ +L +RT GR+ VV G GGDRD KR MG+++ AD+ IVTDDNPRS Sbjct: 360 AHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRS 419 Query: 423 EDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 E P IRA ++ G E G+R EAIR IE D +VVAGKGHE Sbjct: 420 EVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVG 479 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 ++ G D + +RE L Sbjct: 480 QLIA-GVTHHFDDREQVREALR 500 >gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O11] gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O46] Length = 494 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 128/481 (26%), Positives = 222/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K + + P G+F + N + Sbjct: 249 TTVTPYEVFSYGIDEEAQFM--AKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] Length = 520 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 142/483 (29%), Positives = 228/483 (47%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81 + ++ DSR I FV + +++D + ++ A ++ D Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137 PI+ V N R +L + H I+AVTGT+GK++V+ + Q+C Sbjct: 99 LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155 Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q SG+SS +G + TT + + ++ +GV +++EASSHGLDQ Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L + D Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S + K V + ++ + + + PL G F V N L Sbjct: 276 DYETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLL 335 Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +A + + +L GR + +S+ G +DYAHT ++L+ +L + Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ G Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I + +R AI A++ K D++V+AGKGHET + G + D ++ Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512 Query: 491 EIL 493 E L Sbjct: 513 EFL 515 >gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 496 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 132/481 (27%), Positives = 226/481 (46%), Gaps = 10/481 (2%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + K+N + +S+ I IF+A+ GN G FI +AI G+ I++ + L+ Sbjct: 15 ISTDISKIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILK 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138 N PI+ N LS + + Y N++ +TGT+GK++++ F+ + Sbjct: 75 HGIIYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTTISHFIAKWLF 134 Query: 139 RSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G IG + TT S I K L++ + + V +E SSHGL Q+ Sbjct: 135 LLGEKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQN 194 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKE 255 R++ I + F+NL +DHIDYH+ Y +K +LF +L + + K+ Sbjct: 195 RVNNINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKLNVYKYIINYDDVIGKNWIKK 254 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + + ++ +++K + + +++IS + GEF + N Sbjct: 255 IPNSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNL 314 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L++ + +G + + E L + GR + + VDYAHT ++LE +L Sbjct: 315 LLSFVALLTLGYNFKSLANVAENLTMPNGRMKIFYVKKIPR-VIVDYAHTPDALEKVLSA 373 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I+ I +FGCGGDRD+ KR +MGKI + I+T+DNPRSE KI +I G Sbjct: 374 IKLHFKKNIWSIFGCGGDRDKSKRRVMGKICDLYSINIILTNDNPRSESETKIFNDIKIG 433 Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +R AI+ AI+ N++D++++ GKGHE + +K D ++ +I Sbjct: 434 IKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKGHEEHQVFK-YKKVFFSDQILVNKI 492 Query: 493 L 493 L Sbjct: 493 L 493 >gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 7169] gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 12P80B1] Length = 520 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 142/483 (29%), Positives = 228/483 (47%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81 + ++ DSR I FV + +++D + ++ A ++ D Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137 PI+ V N R +L + H I+AVTGT+GK++V+ + Q+C Sbjct: 99 LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155 Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q SG+SS +G + TT + + ++ +GV +++EASSHGLDQ Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L + D Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S + K V + ++ + + + PL G F V N L Sbjct: 276 DYETADFQIIGYSQQKPNADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLL 335 Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +A + + +L GR + +S+ G +DYAHT ++L+ +L + Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ G Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I + +R AI A++ K D++V+AGKGHET + G + D ++ Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512 Query: 491 EIL 493 E L Sbjct: 513 EFL 515 >gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] Length = 528 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 150/495 (30%), Positives = 228/495 (46%), Gaps = 21/495 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + I VS DS G +FV + G G F +A+A GA A++ Sbjct: 31 LAPASAEDAAALNDLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLT 90 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131 S + + TP+LV + R + ++ Y ++ AVTGT+GK++ A Sbjct: 91 DSDGAQIVHES--APGTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAY 148 Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 F+ I G + + ++ TT L + ++ V S+EAS Sbjct: 149 FLDAILSAHVGGCMVAGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEAS 208 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH + HRLDGI + FTNL RDH+D+H+T + Y AK RLF + DD Sbjct: 209 SHAIVLHRLDGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGVV--CVDD 266 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306 + + A RV + ++ V + T+ + + PL Sbjct: 267 QWGAALAADAPIEIDRVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPL 326 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365 PG V NA +A + I G+ +A L H +PGR + + VD+AHT Sbjct: 327 PGLVNVQNAALALVMAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHT 386 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++E+ LK +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ ++TD+NPRSEDP Sbjct: 387 PEAMELALKAVRPITPGRLIVVFGSDGDRDQGKRPMLGQVCARLADVLVITDENPRSEDP 446 Query: 426 EKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + IR I+ G+ E R +A+R +E+ D ++V GKGHE + Sbjct: 447 QLIRDAILDGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA- 505 Query: 478 GEKKMSVDCDIIREI 492 GE D ++ E Sbjct: 506 GEFIRYNDAPVMAEA 520 >gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanobium sp. PCC 7001] gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanobium sp. PCC 7001] Length = 500 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 156/487 (32%), Positives = 235/487 (48%), Gaps = 15/487 (3%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P E ++ +S DSR + G +FV + G + DG + A+ GA A VV +A + Sbjct: 16 VPEALGEATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSALKSGACAAVVGTAAAAA 75 Query: 81 DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 D +T P++VV+ ++ L A+ +G+ + + + VTGT+GK++ ++ + Sbjct: 76 DPPSTTD---PVVVVEGPVARWAGLLAAAFWGEPSQRLALIGVTGTNGKTTTTHLIEHLA 132 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +G + G + +A + TT L L+ + G ++E SSH LDQ Sbjct: 133 ATAGTPAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAGARIGAMEVSSHALDQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSK 254 R+ G + FTNL +DH+DYH + +AYF AK LF L +P + D Sbjct: 193 QRVAGCRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLESATPNAVVNGDDPWG 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + R C S+ + + + + + + F PL G F + N Sbjct: 253 AQLARQLGERCWTSSLEDPSAHLRIDSLEMDSSGVRGRLVTPLGAGHFRSPLLGRFNLMN 312 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMI 372 L A G G+ ++LE L VPGR E V G + VDYAHT + LE Sbjct: 313 LLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPAVLVDYAHTPDGLENA 372 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R T GR+I VFGCGGDRD+GKRP MG IA LAD +VT DNPR+EDP++I ++ Sbjct: 373 LRASRPFTRGRLICVFGCGGDRDRGKRPQMGAIAARLADRVVVTSDNPRTEDPQRILDDV 432 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + GIP + +R AI AI D++++AGKGHE I+ K D + Sbjct: 433 VAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAGKGHEDYQILGT-TKIHFDDREEA 491 Query: 490 REILGLI 496 + L I Sbjct: 492 EKALRGI 498 >gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] Length = 492 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 130/502 (25%), Positives = 212/502 (42%), Gaps = 27/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ L+ + ++ ++ DSR G FV IVG + D H F Sbjct: 1 MKLEQLLEGVPFTLVQGS-------LDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+G +V+ L ++ V+++R ++L + L+G + + Sbjct: 54 ADCAAKGVSVLVIQHDIDLSAMP-----GVTVVKVESSRYAMALMSGNLFGNPSRQMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG + TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ G+ G FTNL DHI + + + Sbjct: 169 LDAGCDVALMEVSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFR 228 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 DD ++ +++ ++ H+ V V G Sbjct: 229 RCDVGVVN--IDDENTEALLEGHTCKLVTYGRSEKADYRAEGCELLRTHDFLGVAFHVSG 286 Query: 298 KDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +D +PGEF VYNAL A + +G+ + VV GR E V + Sbjct: 287 RDNMDVRVNMPGEFSVYNALAALAVGKVLGL-PDAAIHEGLGKCVVKGRVELVPISK-KF 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +DYAH S E +L +R R++VVFGCGG+R + +R MG+ +AD +I+T Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYHPHRLVVVFGCGGNRSKLRRYGMGETCAKMADFSILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +DN R E E I A+I G+ F+E +R++A+ A++ + D++ V GKGHE Sbjct: 405 EDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 T G K ++ +++ E Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485 >gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] Length = 494 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + + + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNELIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 156/506 (30%), Positives = 235/506 (46%), Gaps = 28/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DLI + + V+ D+ + G +F A+ G+ G Sbjct: 1 MKLSDLIAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A+A+GA A++V + +L V + RK ++ ASR +G+ + Sbjct: 55 VAPAVARGAVAVLVDQQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +A+TGT+GK+SV+ + + + IG + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK+R Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF A++ ADD + K A G + + + T Sbjct: 232 LF---QGLCRCAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLTVDASGSRFT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P PG F V NAL C +G A ++ LE++ +PGRFE + + Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS 346 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA +D+ Sbjct: 347 G-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDL 405 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T DNPR EDPE I +I GI F +R AI A+ D++++AGKG Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E V GE D +RE++G Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490 >gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] Length = 504 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 128/504 (25%), Positives = 220/504 (43%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + D+I ++ P K+N +S DSR I G +FVAI G DGH +I Sbjct: 7 MNILDIIEN--IKIKTIYGSLP-----TKVNNISQDSRKITKGDVFVAIKGYTVDGHNYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118 + IAQGA ++ S + + ++VV K S+ A ++ + + + Sbjct: 60 EKVIAQGAALVIASR------YEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTV 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSY 176 AVTGT+GK+S+++ V + + G SS IG + + L TTP + L + Sbjct: 114 AVTGTNGKTSISTLVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234 L + + +++ EASSH + R+ + + FTNL +H+D+H Q Y + + Sbjct: 174 LHREDIKNLAFEASSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFST 233 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNKQQ 290 E+ + D +M + SV + + + K Sbjct: 234 LGNNFSEAKYGVLNKDDEYYSIMSKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTT 293 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T+ +++ G+F V N L A G ++ L L + GR E +G Sbjct: 294 FTLKSPEGEYECQTNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILG 353 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409 I D+AHT + + +L+ R I + ++ GG RD K P++G+I + Sbjct: 354 -EDLPIDIISDFAHTPDGYKKLLEATREIRKNKRTLLLTGMGGGRDISKGPLIGEIISE- 411 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD ++T D+PR ED E + I G+ + + R +A++ I++ DV+++A K Sbjct: 412 ADYVVITTDSPRDEDVEVLMGTIEKGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVILASK 471 Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491 G E I+ G+K D + E Sbjct: 472 GREDYEILRGGKKVWHSDPVVAIE 495 >gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] Length = 508 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 27/488 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +I+ V+ S+ + ++F A+ G + DGH FI AI +G+ IV S Sbjct: 21 KGSLDLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRDMDF--- 77 Query: 83 SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 N + VD+ RKF+S F++ Y + + ++ VTGT GKSSV ++ + + Sbjct: 78 ---YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134 Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G+ I S R +TP + LS + V + +E++SHGL Sbjct: 135 KKGVKVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAILESTSHGL 194 Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 D RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 195 DLKTARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + L F+ + +G + L G F V Sbjct: 255 YSDFKNAVKKSFTYSLKSSKADFFVSFIDEKIDST--RFEFYHKGVKYFANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ ++ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIVLCDEDPRGENSMYIIKD 431 Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I GI + +R AI AI + D++V GKGHE I N E + Sbjct: 432 IAKGIVNKVVNQDLFFIPDRRLAIEKAISLARAGDLVVALGKGHENSIIYKNKE-LFWNE 490 Query: 486 CDIIREIL 493 + ++ + Sbjct: 491 QEAVKNAI 498 >gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] Length = 520 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 146/499 (29%), Positives = 234/499 (46%), Gaps = 39/499 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHL------FIPQAIAQGAEAIVVSSAYSL 79 + + DSR + G +FV + D ++ Q + A ++ S Sbjct: 26 NQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDLEKVAGYLAQVSDK-AAFVLSEIDVSA 84 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSVASFVQQ 135 + PI+ + R FL L +HP ++AVTGT+GK++V+ V Q Sbjct: 85 IQSQFML----PIIYLPTIRDFLGSLIQTSLQQQHPTQLPAVIAVTGTNGKTTVSQLVAQ 140 Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + +SG+ + +G + TT L A+ + QGV +++EASSHGL Sbjct: 141 LISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQHAIDDFAKQGVQALAIEASSHGL 200 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYS 253 Q RL G+ + FTNL RDH+DYH Y AK RLF++ P + AII DD +S Sbjct: 201 HQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARLFDKAHFPTLTHAIINLDDEFS 260 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPL 306 + +++ A+ + V + + + Q +++ + PL Sbjct: 261 ELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGGDLTIALSKAVTPQGELTVNSPL 320 Query: 307 PGEFQVYNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 G F V N L + A +G+ A + + L GR + V + S V Sbjct: 321 LGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPTLRGATGRMDRVPSTSS--CFIV 378 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE +L ++++ +G + VFGCGGDRD+GKRP+M + L LAD I+T DNP Sbjct: 379 DYAHTPDALEQVLTSLKSHCTGELWAVFGCGGDRDKGKRPLMAQAGLRLADKVILTADNP 438 Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I ++ G+ I + +R +AI A++ D++V+AGKGHET + Sbjct: 439 RSEDPNAILNDMQAGMTCQQHYQAIIEPDRQKAIEYAVQHAKPSDIVVIAGKGHETYQEI 498 Query: 476 TNGEKKMSVDCDIIREILG 494 G + D +++ + Sbjct: 499 K-GVRHDFDDKVVVKNAIE 516 >gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] Length = 503 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 136/477 (28%), Positives = 206/477 (43%), Gaps = 23/477 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR +Q G F+A G+ DG F+ A+A GA +V + R Sbjct: 25 TDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEAEGVDAHGFDDARIGA---- 80 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + A +G+ + ++A TGT+GK+S A + Q G +G Sbjct: 81 LPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTLGI 140 Query: 153 -------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + LTTP P+ L L ++ G ++EASS G+ +HRL +++ Sbjct: 141 GEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALRIE 200 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN RDH+DYH + AY+ AK LF K + + H Sbjct: 201 VALFTNFTRDHLDYHGSMDAYWAAKRVLFGWPGLKAAAVNLDDAQGAELARSLAGHVPEL 260 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S+ + + + + T+ G L G++ N L G A+ Sbjct: 261 WTYSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGGLRAL 320 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVDYAHTSNSLEMILKNIRTI--- 379 G+ A + + +L VPGR + V ++ + VDYAHT ++LE L +R + Sbjct: 321 GVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRPLAAA 380 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGI 436 GR++ VFGCGG+RD KRP+M +A LAD I T DNPR E P I ++ Sbjct: 381 RGGRLLCVFGCGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAPAAILVDVAAGFAAP 440 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI AI +DVL++AGKGHE + G K+ D R+ L Sbjct: 441 AAVEMIEDRRAAIARAIGSAEARDVLLIAGKGHEDYQEIA-GVKQPFSDVAEARQAL 496 >gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] Length = 494 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + G ++++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 307 AVMIAVWSKGTSLEMIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479 Query: 495 L 495 L Sbjct: 480 L 480 >gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus COL] Length = 492 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 129/481 (26%), Positives = 223/481 (46%), Gaps = 24/481 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 15 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 68 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A LY ++ TGT+GK+S+A+ + I ++ Sbjct: 69 -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 127 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 128 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 ++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 188 RSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 247 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R + K + + P G+F + N + Sbjct: 248 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 305 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ +E L V GR E + + + +DYAHT++ + ++ + Sbjct: 306 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 364 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ G Sbjct: 365 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 423 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +IE +R E I+ AI++ D +V+A KG E I+ K D +++G Sbjct: 424 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 478 Query: 495 L 495 L Sbjct: 479 L 479 >gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 526 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 154/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%) Query: 10 DFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQ 66 EL + +F ++ +I+ + DS + IF A+ G+++ G F A Sbjct: 21 TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 80 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A++ + P L+VD+ R+ L + +S +YG ++ + VTGTS Sbjct: 81 GALAVLTDRDGAT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTS 138 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + +++ +G IG T T +LTTP L K + GVT Sbjct: 139 GKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVT 198 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242 HV +E SSH L R+ G +FTNL +DH+D+H T + YF+AK F P Sbjct: 199 HVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 258 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ DD + + + A NA + L V + + + Sbjct: 259 HQVVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPV 318 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG F V NA +A + G+D + ++ V PGR E + + VDY Sbjct: 319 TLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQVAV-PGRMERI-DEGQDFLAVVDY 376 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH ++ +L +RT GR+ VV G GGDRD KR MG+++ AD+ IVTDDNPRS Sbjct: 377 AHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRS 436 Query: 423 EDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 E P IRA ++ G E G+R EAIR IE D +VVAGKGHE Sbjct: 437 EVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVG 496 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 ++ G D + +RE L Sbjct: 497 QLIA-GVTHHFDDREQVREALR 517 >gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] Length = 483 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L+ + KI + SDSR+++ IF I G DGH +I AI QGA+ IV S Sbjct: 1 MKRLNELYDIDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHS 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 ++ ++V+NT + L+ ++ Y + + VTG+SGK+ VAS Sbjct: 61 KEL------LEKKNGIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASM 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ R + + + + F +D TTP +YL + L ++ GV V++EASSH Sbjct: 115 IKDAMSRYCNTGYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSH 174 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL R+D + TN+G +H+D+H T++ Y AK +LFE + P + Sbjct: 175 GLALGRVDSVNFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKPSGWVVLNS---DD 231 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + G + + K + + +S +G + P+ +F + Sbjct: 232 ENFLRIKNSTKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNI 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L IA+G D +VL+ ++++ V GR E + + + +DY N+ E I Sbjct: 292 YNVLALVCTLIAMGCDEKMVLQAVKEVKPVEGRMELIKAK-QNFSVIIDYCQHINNYEQI 350 Query: 373 LKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + ++ GR+I V G G R+ R +GK+A D I+T + R E+ I Sbjct: 351 FEFVDSVRQNKGRLIAVLGAPGKRNYKMRREIGKVANKYLDHVILTQLDDRGENVYDICK 410 Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I I + +R AI AIE+ K D++++ GKGHE + G D I Sbjct: 411 TIQAEIVDISSVIIPSRQVAIEQAIEIACKDDIILILGKGHEKFISLEVGHVDYPGDSTI 470 Query: 489 IREILGLI 496 ++E + I Sbjct: 471 VKEAIERI 478 >gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] Length = 514 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 229/504 (45%), Gaps = 26/504 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ + LI E + + ++H+ G +F A+ G + G F Q Sbjct: 18 LATLLARADARLIAGS----PDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A GA A++ +A + + A + PILV + R L A+ +YG+ L+V G Sbjct: 74 AVAAGAVAVLTDAAGA--ERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSL-ELSVLG 130 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178 +G S + + + G T+ + +RL TTP L L+ + Sbjct: 131 VTGTSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVML 190 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GVTHV +E SSH L R++G + G+FTNL +DH+D+H+ Q YF AK LF+ Sbjct: 191 ERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDGRS 250 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 E + D+ + + + + +G Sbjct: 251 THEVVVV----DSAWGQALLTPQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGA 306 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PLPGEF V NA++AA + G+ ++ L ++ V PGR E V Sbjct: 307 RAAARIPLPGEFNVANAVLAAAILSTAGVSLEHIVAGLAQVQV-PGRMERVHVGQE-FTA 364 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++ L +R T GRII V GCGGDRD KRPIMG+ A +D+ IVTDD Sbjct: 365 VVDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDD 424 Query: 419 NPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSEDP IRA ++ G +E G+R EAI A+ + D++ +AGKGHE Sbjct: 425 NPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHE 484 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 + G D D + + Sbjct: 485 SGQE-AGGVVHPFSDRDELAAAIR 507 >gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 537 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 226/473 (47%), Gaps = 23/473 (4%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99 I G +F A+ G + G F A+A+GA AI+ A + + S+ P+LV D+ R Sbjct: 63 IVEGDLFAALPGARAHGAEFAADALARGATAILTDEAGFA--LVSALGSDMPVLVHDDPR 120 Query: 100 KFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSF 156 L ++ +YG+ E + + +TGTSGK++ + V+ +G ++ +G + Sbjct: 121 GVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGR 180 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 + LTTP L + + QG+ V +E SSH L R+DG++ G+FTNL +DH Sbjct: 181 RVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLSQDH 240 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHNAGCRVLS 269 +D+H+ + YF AK RLF + + D + M Sbjct: 241 LDFHRDFEDYFAAKARLFAADSSVHAQHAVICIDDVWGQRMADVARGAHSIVTTVATTPD 300 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 V ++ + EG D LPG++ V NA +A LC A+G+D Sbjct: 301 SEGAVWTAGPATVSPSGSQTFALTTAEGTTLDVELRLPGQYNVANASLAVALCAALGVDP 360 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 +E + + V PGR + + VDYAH ++E ++ +R GR+ VV G Sbjct: 361 RDAVEGIAGVDV-PGRVQRIDRGQ-DFLAVVDYAHKPAAVEAVIATLREQVRGRVAVVVG 418 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIE 441 GGDRD GKRP+MG A AD+ I+TDDNPRSEDP KIRA + G E Sbjct: 419 AGGDRDAGKRPLMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVPESERGQVWE 478 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R +AI A+ DV++VAGKGHE + +G K D D++ + + Sbjct: 479 VADRAKAIADAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRDVLGDAIE 530 >gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC8] Length = 520 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 143/483 (29%), Positives = 229/483 (47%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81 + ++ DSR I FV + +++D + ++ A ++ D Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137 PI+ V N R +L + H I+AVTGT+GK++V+ + Q+C Sbjct: 99 LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155 Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q SG+SS +G + TT + + ++ +GV +++EASSHGLDQ Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L + D Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A + S + K V + ++ + + + PL G F V N L Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335 Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +A + + +L GR + +S+ G +DYAHT ++L+ +L + Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ G Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I + +R AI A++ K D++V+AGKGHET + G + D ++ Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512 Query: 491 EIL 493 E L Sbjct: 513 EFL 515 >gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 103P14B1] gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 46P47B1] gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC1] gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC7] gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis O35E] gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 101P30B1] Length = 520 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 143/483 (29%), Positives = 229/483 (47%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81 + ++ DSR I FV + +++D + ++ A ++ D Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137 PI+ V N R +L + H I+AVTGT+GK++V+ + Q+C Sbjct: 99 LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155 Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q SG+SS +G + TT + + ++ +GV +++EASSHGLDQ Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L + D Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A + S + K V + ++ + + + PL G F V N L Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335 Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +A + + +L GR + +S+ G +DYAHT ++L+ +L + Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ G Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I + +R AI A++ K D++V+AGKGHET + G + D ++ Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512 Query: 491 EIL 493 E L Sbjct: 513 EFL 515 >gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 497 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 143/503 (28%), Positives = 237/503 (47%), Gaps = 23/503 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++LI E + +F ++ + ++ +DSR ++AG F+AI G DGH I Sbjct: 3 MKQKELI-----EALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 + +AQGA+ I+V L TI +N ++VD++ + ++ A++ Y + ++ Sbjct: 58 AEVVAQGAKLIIVEQ---LPANYQTIPAN--FVLVDSSFRAQAILANKFYQEPSRKLKVV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++ +S + + + +IG + TTP+ ++L + + Sbjct: 113 AVTGTNGKTTTSSMISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEM 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 +G +EASSH L RL + FTNL R+H+D+H+T Y AK LF + Sbjct: 173 LERGCQDAVIEASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQL 232 Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 I D EVM +A A S+ + + ++ + Sbjct: 233 GQAFHQGRPRLAIINKDDPYWEVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKL 292 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTN 352 + F+ P+ G + V N L A ID A +L + V GR E + N Sbjct: 293 HFNDQVFELELPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALN 352 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411 + + VD+AHTS++LE +++ + + GR++ + G G+RD G RP +G + + AD Sbjct: 353 -KDFDVVVDFAHTSDALERVMQELVSHKQGRLLALMGHSGGNRDSGARPGIGDVLFNYAD 411 Query: 412 IAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + T DNPR ED KI E+I H + +R A+ T +EM DVL+ AGKG Sbjct: 412 YIVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKGG 471 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 E I+ + +K D + I Sbjct: 472 EGYQIIGD-QKIPYDDAEEIMAY 493 >gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum indicum S5] gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum indicum S5] Length = 464 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 217/473 (45%), Gaps = 32/473 (6%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA-IVVSSAYSLQ 80 P + + + +S D+R I +F+AI G++ D HL +P+ ++ G A + Sbjct: 13 PHPQVDVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGP 72 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138 + LV+ + + + A YG ++ VTGT+GKSS S+++Q+ Q Sbjct: 73 NT----------LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQ 122 Query: 139 RSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + IG + + TTP L L V +V +E SSH + Sbjct: 123 ALGHRTATIGTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIAL 182 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ GI+ FTNL DH+D+H T Y K L +PA YA + Sbjct: 183 GRVQGIRFHGAIFTNLTPDHLDFHGTMDDYLQTK-------LRLFTPAPPYAIIHTRRIP 235 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K G G ++ + I + + PL G + N Sbjct: 236 RKLPPLPGVLSFGPGEDADIPTTEQQVSPEG-----IRFCLQGQIYRSPLRGRGNLENVQ 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A C G + V + L + GRF + + G +DYAHT ++LE +LK+ Sbjct: 291 AVAAFCHHEGQERQQVARAIAALRPIEGRF--MPISHNGRHGIIDYAHTPDALEQLLKST 348 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R I GR+IVVFGCGGDRD+ KRP+MG IA +LADI IVTDDNPR+EDP+ I ++II + Sbjct: 349 REICHGRLIVVFGCGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQIIAAM 408 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 R+ AI A E+ N D++V+AGKGHE I +K D + Sbjct: 409 DMGRTTVIHERLRAITCARELANGDDLVVIAGKGHEKYQIYGR-QKHRFCDAE 460 >gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] Length = 477 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 139/500 (27%), Positives = 222/500 (44%), Gaps = 35/500 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ K I + + +I V++DSR I+ +FVAI G + DGH FI Sbjct: 1 MNLTDILDKIDY-------IDYTKNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AIA GA IVV+ + D + + V + R L+ ++ + + ++ Sbjct: 54 DKAIANGANTIVVTEDVTEID-------DINYIKVKDARIALAQISNVVCDFPSKKLRVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ +S + I + IG T + TTP + K L Sbjct: 107 GVTGTNGKTTTSSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLS 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + VE SSHGL HRLDGI NL +H+D+H+ + YF+AK + Sbjct: 167 VEEKIDNAVVECSSHGLYLHRLDGIDFDVAVLNNLSMEHMDFHKNMENYFDAK-----MI 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + I D K ++ + E Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ F+ F VYN++ A +G + + + LE V RFEFV N G Sbjct: 276 KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGIN 334 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +D+AHT + E I K++ R I V+G GDR R +GKI+ + ++VT Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTT 392 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P+ + E I +I+ GI ++ +R AI+ AIE+ NK D +++ GKG E Sbjct: 393 DDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLGKGQENFI 452 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + EK + + + E+L Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472 >gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 507 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 145/517 (28%), Positives = 230/517 (44%), Gaps = 38/517 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L + L + I ++ S+ + +F+ I G ++DGH +I Sbjct: 1 MILKALFERIPAVLCQGSW-------DTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQD-----------------FSATIRSNTPILVVDNTRKFLS 103 +A +GA A +V A+ + + I+ V NTR+ + Sbjct: 54 QEAAERGAAACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAA 113 Query: 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDN 160 A+ Y + ++ +TGT GK+S ++ I + +G + +G I + Sbjct: 114 WAAAAFYRYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRA 173 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 TTP I + + L ++ G +E SS GL HR D I G FTNLGRDHI Sbjct: 174 ERTTPEAIDIQRYLRKMADSGCRFAVMEVSSQGLKLHRSDSILFDVGVFTNLGRDHIGPK 233 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + + A + K I DD Y +E+ K A C Sbjct: 234 EHKDMAEYAHYKSLLF--QKCCFGIGNIDDPYYREIFKDASCQVCTYSCRQKADVQASDI 291 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + + V G+++ P GEF VYNA+ A +C GID ++ + L+ + Sbjct: 292 MLVNRNGQLGTFFKVNGEEYAVSAP--GEFSVYNAVAAITVCRHYGIDQEIIRKALKTIR 349 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V PGR E + N RG + +DYAH + SL+ IL+ +R ++ V+FGCGG R +R Sbjct: 350 V-PGRVEVI-DNDRGYLLLIDYAHNAMSLKNILETMRRYHPRQLWVLFGCGGGRSAARRR 407 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEML 456 MG +A AD ++T DNPR E+PE+I I G+ + +R EA+R + Sbjct: 408 EMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKETKGQYQMMVDRKEAMRFMLAQG 467 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D+L++AGKGHE + G+ + I +EIL Sbjct: 468 RPGDILILAGKGHEQYQEIK-GDYLPFNERKIAQEIL 503 >gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis CO72] Length = 520 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 144/483 (29%), Positives = 230/483 (47%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81 + ++ DSR I A FV + + +D + ++ A ++ + D Sbjct: 40 QFDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDS-AAFVISELDLAGLD 98 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137 PI+ V N R +L + H I+AVTGT+GK++V+ + Q+C Sbjct: 99 LDDI---QIPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155 Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 Q SG+SS +G + TT + + ++ +GV +++EASSHGLDQ Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L + D Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A + S + K V + ++ + + + PL G F V N L Sbjct: 276 DYEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335 Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +A + + +L GR + +S+ G +DYAHT ++L+ +L + Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ G Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I + +R AI A++ K D++V+AGKGHET + G + D ++ Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512 Query: 491 EIL 493 E L Sbjct: 513 EFL 515 >gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 155/506 (30%), Positives = 235/506 (46%), Gaps = 28/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DL+ + + V+ D+ + G +F A+ G+ G Sbjct: 1 MKLSDLMAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A+A+GA A++V + +L V + RK ++ ASR +G+ + Sbjct: 55 VAPAVARGAVAVLVDQQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +A+TGT+GK+SV+ + + + IG + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK+R Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF A++ ADD + K A G + + + T Sbjct: 232 LF---QGLCRRAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLTVDASGSRFT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P PG F V NAL C +G A ++ LE++ +PGRFE + + Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS 346 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA +D+ Sbjct: 347 G-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDV 405 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T DNPR EDPE I +I GI F +R AI A+ D++++AGKG Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E V GE D +RE++G Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490 >gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] Length = 482 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 130/498 (26%), Positives = 214/498 (42%), Gaps = 37/498 (7%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65 P L ++F + E + ++ DSR ++ G++FVA+ G DGH F+P+A+A Sbjct: 2 PTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALA 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123 +GA A+V +L P L V + R+ L+L A R +G+ +L VTG+ Sbjct: 62 RGAVAVVGEKPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GKS+ AS + + +R+ S + + TTP + L + + Sbjct: 113 KGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAADR 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ +E SSH L R++G+ G F N D H A R L+ + Sbjct: 173 GLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDD---HLDFHGTAEAYFRAKALLVER 229 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ + + ++ H + G ++ + + + Sbjct: 230 SDLAVLARSLPHFPRLAQKPHLSFGE-------GGEVYAEGLRETPEGLAFRLHTPWGSG 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G + + NAL A+ +A+G+ VLE L VPGR E V R+ + Sbjct: 283 EAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVV--LKAPFRVVI 340 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT SLE LK +R T GR+++V G G+RD +R +G++A LAD T+++ Sbjct: 341 DFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEEDH 400 Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 R ED I + + +R EAI AI D +++AGKGHE Sbjct: 401 RGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE-R 459 Query: 477 NGEKKMSVDCDIIREILG 494 + + + L Sbjct: 460 GQVALPWNEREAALKALR 477 >gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] Length = 482 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 131/498 (26%), Positives = 214/498 (42%), Gaps = 37/498 (7%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65 P L ++F + E + ++ DSR ++ G++FVA+ G DGH F+P+A+A Sbjct: 2 PTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALA 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123 +GA A+V +L P L V + R+ L+L A R +G+ +L VTG+ Sbjct: 62 RGAVAVVGERPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GKS+ AS + + +R+ S + + TTP + L + + Sbjct: 113 KGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAADR 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ +E SSH L R++G+ G F N D H A R L+ + Sbjct: 173 GLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDD---HLDFHGTAEAYFRAKALLVER 229 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ + + +R H + G ++ + + + Sbjct: 230 SDLAVLARSLPHFPRLAQRPHLSFGE-------GGEVYAEGLRETPEGLAFRLHTPWGSG 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G + + NAL A+ +A+G+ VLE L VPGR E V R+ + Sbjct: 283 EAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVV--LKAPFRVVI 340 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT SLE LK +R T GR+++V G G+RD +R +G++A LAD T+++ Sbjct: 341 DFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEEDH 400 Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 R ED I + + +R EAI AI D +++AGKGHE Sbjct: 401 RGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE-R 459 Query: 477 NGEKKMSVDCDIIREILG 494 + + + L Sbjct: 460 GQVALPWNEREAALKALR 477 >gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing bacterium SS3/4] Length = 484 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 115/480 (23%), Positives = 197/480 (41%), Gaps = 23/480 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++EV DSR + +FV I G+ D H FIP + G + + + Sbjct: 11 DQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGC-------KVLVVEKEVEV 63 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ ++ V++ R L+ ++ +G E + +TGT GK++ + ++ + + +G + Sbjct: 64 PADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGKKT 123 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I TTP + + G +E SS L HR+ GI Sbjct: 124 GLIGTNGAVIGDVKFPTSNTTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGGIM 183 Query: 204 LIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G FTN+ DH H++ + Y K RL + D K+ R Sbjct: 184 FDYGLFTNISPDHIGPKEHKSFEEYLFYKSRLLTVCKTGIVNRLTDHYDEVVKDATCRLL 243 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + + + + + ++G+ + AL L Sbjct: 244 TYALNGNADFMGDDIHYASNHDFVGIEFSIHGMLDGRVRVGMPGKFNADNALAALAVCTL 303 Query: 322 CIAIGIDSALVLEHLEKL-----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 ++ G L V GR E + + VDYAH + S+E +L + Sbjct: 304 ALSGGSGVLDDHTKQAILGSLVKVRVDGRMEIAHVSK-KCSVIVDYAHNAVSMESLLTTL 362 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R R++ VFGCGG+R + +R MG+I +AD+ I+T DNPR E E I +I G+ Sbjct: 363 RDYHPKRLVCVFGCGGNRARDRRYSMGEIGGKMADLCIITADNPRFEKNEDIIKDIEVGL 422 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++ +R EAI AI + D++ + GKGHE + G K +D +++ E Sbjct: 423 AKTDGTYLVIPDRQEAIFYAIRNAEEGDMIAIIGKGHEDYQEIE-GVKHHFLDREVVEEA 481 >gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] Length = 517 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 142/478 (29%), Positives = 221/478 (46%), Gaps = 18/478 (3%) Query: 29 KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ + SDSR I G F+A G DG + AIA+GA A +V A Sbjct: 31 RVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAP 90 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ--RSGLS 143 + + + + A++ + + +LAVTGT+GK+S A ++ Sbjct: 91 GAS-LASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPV 149 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + +TTP P+ L +AL +G++ ++EASS GL+Q RL G Sbjct: 150 CALAGTLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGT 209 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 ++ A FTN +DH+DYH + AY+ AK LF+ P A+I DD ++ Sbjct: 210 QIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFDW--PGLQAAVINIDDPAGAQLHAELAG 267 Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + S+ QG + + + T+ + G + + N L Sbjct: 268 RVPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLAT 327 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379 ++G A L+ L VPGR + + + + VDYAHT ++L L+ +R + Sbjct: 328 LRSLGWPLAEALQAGAGLQPVPGRMQQLALAGQPL-VVVDYAHTPDALAKALQALRPLAA 386 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +GR+ VFGCGGDRD GKRP+MG A AD ++T DNPRSEDP+ I +I+ GI Sbjct: 387 RRAGRLWCVFGCGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPDAILRQILQGISR 446 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI A+ DVL++AGKGHE V G ++ D + + Sbjct: 447 RRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKGHEDSQEVA-GVRRPFSDWAHAQRAM 503 >gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20] Length = 528 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 148/477 (31%), Positives = 224/477 (46%), Gaps = 21/477 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS DS AG +FV + G G F QA+A GA A++ + + TP Sbjct: 49 GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHET--APGTP 106 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +LV D+ R + ++ +Y ++ AVTGT+GK++ A F+ I G Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + ++ TT L + ++ V S+EASSH + HRLDG+ + Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVVDVAG 226 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266 FTNL RDH+D+H+T + Y AK +LF + DD + + A R Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGVV--CVDDQWGAALAAEAPIEIDRVR 284 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324 ++ V + T+ + + PLPG V NA +A + I Sbjct: 285 AYPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383 G+ +A L H +PGR + + VD+AHT ++E+ LK +R IT GR Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKAVRPITPGR 404 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP+ IR I+ G+ Sbjct: 405 LIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVRGVRPDL 464 Query: 437 PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 E R +A+R +E+ D ++V GKGHE + GE D ++ E Sbjct: 465 TDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMAEA 520 >gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] Length = 533 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 235/501 (46%), Gaps = 35/501 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 ++ ++ + S +Q G +F A+ G++ G F GA A++ + + Sbjct: 28 GTVAATHQDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATFAAD---SGAAAVLTDAEGA 84 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQIC 137 ++ P+LVVD+ R+++ A+ +YG + + + + +++ + Sbjct: 85 ----EILADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTTYLIERA 140 Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + S IG T T + +LTTP + L+ + +GVTHV +E SSH L Sbjct: 141 LMAKHSVGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVSSHALAL 200 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADDAYS 253 R+ GI FTNL +DH+D+H T + YF K +LF + + A++ DD + Sbjct: 201 GRVTGIDFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVCVDDDWG 260 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----KQQVTISVEGKDFDFLFPLPGE 309 + + ++G + L+VG + +V +H +Q++T++ EG++F + L G Sbjct: 261 QRLAGMIADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYDIGLVGS 320 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N+L+A +G D + + V PGR + V VDYAH ++ Sbjct: 321 FNVANSLLAISCVTQLGEDPQAAAAAIADVQV-PGRMQAVDAGQ-PFLAVVDYAHKPGAV 378 Query: 370 EMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++ + +GRI +V G GG+RD KRP+MG+ A +AD VTDDNPR E+P Sbjct: 379 AAVVRTLSDYLPSPTGRIGIVLGAGGNRDHDKRPMMGEEAAKVADAVFVTDDNPRDEEPA 438 Query: 427 KIRAEIIHGIPGFIE-------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 IR+ I+ G+ E R +AIR A+ D +VVAGKGHET Sbjct: 439 PIRSMILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIVVAGKGHETGQ 498 Query: 474 IVTNGEKKMSVDCDIIREILG 494 V GE D + + L Sbjct: 499 EV-RGEIHPFADLEELAAALE 518 >gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 488 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 140/504 (27%), Positives = 216/504 (42%), Gaps = 33/504 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + I+ + DSR +F + G DGH F Sbjct: 1 MKLNKLVNTEL---------------DCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFA 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QA+ GA A+V S + + + VD+ L Y N+ Sbjct: 46 KQAVENGAVAVVHSDDIDVIE-------GIVYIRVDDVMTELHRVTDVFYNSPSTNMYVY 98 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GKS+ V+ I +R G+++ IG S + LTTP + L L + Sbjct: 99 GITGTNGKSTTMLTVRNILRRFGVNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDM 158 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GV V +E SS GL R++ I SFTNL DH+DYH+T + YF AK LF+ L Sbjct: 159 RLEGVEEVCLEVSSQGLALRRVESIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNL 218 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P + D E+++ + V K + + + T+ EG Sbjct: 219 KPSGFMVL--NIDNEYGEILQNQDYSNVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEG 276 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + + F VYN L + G ++ L+ + V GR + + + R Sbjct: 277 KTYPVVTNFVAIFNVYNMLNVIAILHQRGYALEKIIPELKDIEHVDGR-QTMVNKGQPFR 335 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VD+ H +S++ + + +R+ R+I VFG G RD KRPIMG++A D I+ Sbjct: 336 VIVDFGHAPDSMKNVYEFVRSTQDEGARLITVFGAAGGRDTAKRPIMGRVASMYCDHVII 395 Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T+ + R E I +II GI + NR +AI A++M D +V+ GKG E Sbjct: 396 TEHDNRDERVVDITQDIITGIESNNYEFVPNRTDAIEKALKMALPGDTVVLIGKGEEKFI 455 Query: 474 IVTNGEKK-MSVDCDIIREILGLI 496 G K+ D IL + Sbjct: 456 YREQGSKETWMGDEVCASLILDKL 479 >gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RS9916] gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RS9916] Length = 511 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 152/507 (29%), Positives = 226/507 (44%), Gaps = 18/507 (3%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + + P I ++ DSR G +F+ + G + DG F Q +A Sbjct: 2 AQTLHSLLQAVGLPVPEGCPNPAITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLAD 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A V+ SA +L D + + A Y ++ VTGT+GK Sbjct: 62 GAAAAVIGSAAALADPPSPADPVVVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ IC + G S+ G + + + TT L L+ + G Sbjct: 122 TTTTHLIEHICDQIGRSAALFGTLVNRWPGHSITSTHTTAFADRLQAQLAEAVAGGTQVA 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--- 242 ++E SSH LDQ R+ G + A FTNL +DH+DYH + QAYF AK RLF E L Sbjct: 182 AMEVSSHALDQGRVAGCQFSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEG 241 Query: 243 -PAIIYADDAYSKEVMKRAHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A++ DD + +++ + R G + + + I Sbjct: 242 ARAVVNVDDPWGQKLADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAG 301 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F PL G F + N L A G+ + G+ ALVL+ VPGR E V S Sbjct: 302 RGAFQSPLVGAFNLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMA 361 Query: 359 Y-----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAHT + L L R G ++ VFGCGGDRD+GKRP M +A +L+D Sbjct: 362 DLPSVLVDYAHTPDGLRNALLASRPFVKGDLVCVFGCGGDRDRGKRPQMAAVAAELSDRV 421 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DNPR+EDP++I +++ GIP + +R AI I D++++AGKGHE Sbjct: 422 VVTSDNPRTEDPQQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLIAGKGHE 481 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497 I+ K D + L + Sbjct: 482 DYQILGT-TKIHFDDREQAEIALRKRV 507 >gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8109] gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8109] Length = 497 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 142/496 (28%), Positives = 231/496 (46%), Gaps = 16/496 (3%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + P + +++DSR + G +F+ + G + DG F QA+ Sbjct: 5 LRDAGIAVPPGLVNPGLEAITTDSRRVGPGTLFLGLPGERVDGGSFWAQALE---AGAAA 61 Query: 74 SSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + + + ++ P++V+ ++ + + ++ + + + VTGT+GK++ Sbjct: 62 AVIGAAAAAAKPPAADDPVVVIQESVARRIGELSAAYWDHPCRRMVLIGVTGTNGKTTTT 121 Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + +G S G + + TT L L+ +S G ++E Sbjct: 122 HLIEHLAASTGQSVGLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAMEV 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYA 248 SSH L Q R+ G + FTNL +DH+DYH + + YF AK LF + L + + Sbjct: 182 SSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVVN 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D + A C S+ +H+ + + + + F PL G Sbjct: 242 SDDPWGARLAERLGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPAGEGRFRSPLLG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAH 364 F + N L A G+ + + ++LE + + VPGR E V N + VDYAH Sbjct: 302 RFNLMNLLQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDYAH 361 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + L+ L R +GR+I VFGCGGDRD+GKRP M IA LAD +VT DNPR+ED Sbjct: 362 TPDGLDNALSAARPFCTGRLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTED 421 Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P++I +++ GIP + +G+R +AI +AI D+++VAGKGHE I+ EK Sbjct: 422 PQRILDDVVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKGHEDYQILGT-EKV 480 Query: 482 MSVDCDIIREILGLIL 497 D + L L L Sbjct: 481 HFDDREEAERALRLRL 496 >gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] Length = 511 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 148/485 (30%), Positives = 230/485 (47%), Gaps = 34/485 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V DSR G +FVA+VG+ DGH A ++ + + + Sbjct: 23 ELTGVCCDSRQAGPGMVFVAVVGHSADGHA---------YVAAAAAAGATAAVVQRPVEA 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +VV ++R LS A G+ + ++ VTGT+GK+++ + I + + Sbjct: 74 DIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQRWPTGMI 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + + +TTP + L K L+ + + GV ++E SSH LDQHR D + Sbjct: 134 GTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADHCRFDV 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------ESPAIIYADDAYSKEVMKRA 260 G FTNL RDH+DYH YF AK LF ELLP ++I DD + + + +A Sbjct: 194 GLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRVLADQA 253 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G +L+ G +V A V I G +F L G + + N + AA Sbjct: 254 RGTGLALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQNIVGAA 313 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +A+G+ + LE + VPGR + V R ++VDYAH+ ++ L +R + Sbjct: 314 AVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAALAVLRPL 373 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 +GR+I VFG GGDRD+GKRP+MG+ A AD ++T DNPR+EDP I + G+ Sbjct: 374 CAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVEAGLVES 433 Query: 438 GFIEKGN-----RIEAIR--------TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 N R A+ AI+ DV+++AGKGHE I+ K+ Sbjct: 434 EARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHEDYQIIGR-VKRHFD 492 Query: 485 DCDII 489 D + Sbjct: 493 DREQA 497 >gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces himastatinicus ATCC 53653] Length = 538 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 143/503 (28%), Positives = 223/503 (44%), Gaps = 26/503 (5%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL +QL + E + ++ DSR ++ G ++ A+ G + G F QA GA Sbjct: 17 LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127 A++ + + + P+LVVDN R + A+ +Y + H + +TGTSGK+ Sbjct: 77 AVLTDPDGAER----AAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKT 132 Query: 128 SVASFVQ-----QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 + A V + +G + IG + TTP L + + + Sbjct: 133 TTAYLVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERD 192 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V V +E SSH L R+DG F NL +H+++H + YF AK +LF + + Sbjct: 193 VHSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRA 252 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300 DD Y + +++ + + G+ V T I G+ Sbjct: 253 GVINY--DDEYGRRLIEESEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGETV 310 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G F V NAL A GID + + + VPGR E V V Sbjct: 311 RAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDVGQ-PYLAVV 369 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAH ++++E +L+ +R +T G++ V GCGGDRD+ KR MG AD A++T DNP Sbjct: 370 DYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGSAVARYADTAVLTSDNP 429 Query: 421 RSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 RSEDP I A ++ G + + +R AI A+ D ++VAGKGHE Sbjct: 430 RSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTVIVAGKGHEQG 489 Query: 473 HIVTNGEKKMSVDCDIIREILGL 495 + G + D ++RE + L Sbjct: 490 QDIA-GVIRAFDDRQVLREAIEL 511 >gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Methylobacterium extorquens DM4] gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Methylobacterium extorquens DM4] Length = 492 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 270/474 (56%), Gaps = 19/474 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A ++ T Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI R G Sbjct: 76 ADLPEATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRD 135 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G +++ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+ Sbjct: 136 SASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L A +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319 AG + + G G FI L + Q +T+S KD+ P A A Sbjct: 256 AGHAIRTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLA 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A D A V LE L VPGR E +G + G VDYAH +LE +L +R Sbjct: 316 LATQAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 SGR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R EAIR + L DVLVVAGKGHET IV D D +R + Sbjct: 435 EEIGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487 >gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] Length = 478 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 142/500 (28%), Positives = 223/500 (44%), Gaps = 35/500 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ K I + + +I V++DSR I+ G +FVAI G + DGH FI Sbjct: 1 MNLTDILDKIDY-------IDYTKNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AIA G IVV+ S + + V + R L+ ++ + + ++ Sbjct: 54 DKAIANGTNTIVVTEDVSQNE-------GINYIKVKDARIALAQISNVVCDFPSKKLRVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ AS + I + IG T + + TTP + K L Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + VE SSHGL HRLDGI F NL +H+D+H+ + YF+AK + Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAK-----MI 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + I D K ++ + E Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+ F+ F VYNA+ A +G + + + LE V RFEFV N G Sbjct: 276 KNVKFVLNRFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGIN 334 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +D+AHT + E I K++ R I V+G GDR + R +GKI+ + ++VT Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTT 392 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P+ + E I +I+ GI ++ +R AI+ AIEM N D +++ GKG E Sbjct: 393 DDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENFI 452 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + EK + + + E+L Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472 >gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 508 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 150/515 (29%), Positives = 238/515 (46%), Gaps = 36/515 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL-- 58 MKL ++I K PEL + + + +DSR ++ +FV + ED Sbjct: 1 MKLTEIIKK-IPELK-----LIKGDGDLDVGYIWADSRKLKPNDVFV-LP---EDKAETI 50 Query: 59 --FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPE 115 ++ A +G + ++VS IL ++ AS+L G + Sbjct: 51 ESYLQMAYDKGVKVVLVSKRNLKLKNLDLFP---TILESEDALGDVHGKMASQLLGNPSK 107 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAK 172 I+ +TGT+GK+S+ + I ++ IG ++ TTP L Sbjct: 108 KLKIIGITGTNGKTSLTFILFHIAKKLKKKVALIGTVQIQILDRILESGYTTPDASSLNL 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +GV +V +E SSHGL R+ GI++ FTNL +DH+D+H++ + YF +K + Sbjct: 168 LLREMLDEGVEYVFMEISSHGLKLGRVAGIEITCAGFTNLTQDHLDFHESMEDYFESKFK 227 Query: 233 LFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288 +F+ + K ++ D ++ +++R + + + H Sbjct: 228 IFQLLEQSSVKNKFGLVAGDVSFGDRMIQRIRESKLKTPIYILGKSGEFHYSNTKLSLLG 287 Query: 289 QQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + + K+ F L G F V+N A + +G V+ +E++ V Sbjct: 288 SEYRFHKKEKNLPFIEVRSIRTNLLGNFNVFNTAFAMSIAYELGFPWDEVVTAIEEIPTV 347 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGRF+ + + VDYAHT ++LE ILK+ I ++I +FGCGGDRD+ KRP M Sbjct: 348 PGRFQVIPYPDKTRIAVVDYAHTPDALENILKSCVEIRPKQLICLFGCGGDRDRTKRPQM 407 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458 KIA LAD +T DNPR+EDPE I EI G + + +R AI+ A+ +L K Sbjct: 408 AKIAETLADFVFLTSDNPRTEDPESILDEIESGFSRGFKRYEKITDRRVAIQRAVSLLEK 467 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +LVVAGKGHET I+ EK VD I Sbjct: 468 DGILVVAGKGHETYQIIG-KEKTNFVDFLEIENAF 501 >gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] Length = 498 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 130/512 (25%), Positives = 219/512 (42%), Gaps = 32/512 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++I ++ P +N +S DSR I G +FVAI G DGH +I Sbjct: 1 MNILEVINN--IKIKTIYGKLPKS-----VNNISQDSRKIGEGDVFVAIKGYTVDGHNYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118 + I QGA ++ S + N ++VV K S+ A + + + Sbjct: 54 GKVIEQGAALVIASR------YEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSY 176 AVTGT+GK+S+++ V + + SS IG + + TTP + L + Sbjct: 108 AVTGTNGKTSISTLVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234 L + + +++ EASSH + R+ + + FTNL +H+D+H Q Y + + Sbjct: 168 LRRENIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290 E+ + D +M + SV + + + K Q Sbjct: 228 LGNNFSEAKYGVLNKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQ 287 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T++ F+ G+F V N L A G ++ L L + GR E +G Sbjct: 288 FTLNSPEGTFECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILG 347 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409 I D+AHT + + +L+ R I G+ ++ GG RD K P++G+I + Sbjct: 348 DG-LPIDIISDFAHTPDGYKKLLEATREIRKGKRTLLLTGMGGGRDISKGPLIGEIISE- 405 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD I+T D+PR ED E + I G+ + + R +A++ IE+ DV+++A K Sbjct: 406 ADYVIITTDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILASK 465 Query: 468 GHETVHIVTNGEKKMSVD----CDIIREILGL 495 G E I+ G+K D D ++ G+ Sbjct: 466 GREDYEILKGGKKVWHSDPIIAVDEAKKKFGI 497 >gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9605] gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp. CC9605] Length = 501 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 145/504 (28%), Positives = 230/504 (45%), Gaps = 16/504 (3%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + L + P + +++DSR + G +F+ + G + DG F QA+ Sbjct: 1 MTQALHALLSDAGIAVPPGLVNPGLGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTG 122 + + + ++ P++V+ + + A+ + + + VTG Sbjct: 61 ---AGAAAAVIGAEAAAAQPPGADAPVVVIQEPVARRIGEIAAAFWDHPCRCMALIGVTG 117 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK++ ++ + +G S G + + TT L L+ +S G Sbjct: 118 TNGKTTTTHLIEHLAASAGQSVGLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAG 177 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++E SSH L Q R+ G + FTNL +DH+DYH + + YF AK LF + L Sbjct: 178 CGLAAMEVSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLA 237 Query: 242 SPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A D E + A C S+ +H+ + + + + Sbjct: 238 DGARSVVNSDDPWGERLAERLGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPVGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----G 356 F PL G F + N L A G+ + + ++LE + + VPGR E V N Sbjct: 298 RFRSPLLGRFNLMNLLQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLP 357 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + L+ L R +GR+I VFGCGGDRD+GKRP M +IA LAD +VT Sbjct: 358 PVLVDYAHTPDGLDNALSAARPFCAGRLICVFGCGGDRDRGKRPQMAEIAARLADRVVVT 417 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDP +I +++ GIP + +G+R +AI +AI D+++VAGKGHE Sbjct: 418 SDNPRTEDPRQILDDVVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKGHEDYQ 477 Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497 I+ EK D + L L L Sbjct: 478 ILGT-EKVHFDDREEAERALRLRL 500 >gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 500 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 162/509 (31%), Positives = 239/509 (46%), Gaps = 26/509 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGH 57 MKL +L++ +FPEL I + SDSR IF + G K+ Sbjct: 3 MKLTNLLH-EFPELKLGSLPSGKNPDSVPIEYIQSDSRKTNPEDIF-CVPESIGTKK--G 58 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 FI A I++ + ++ S+ I ++ + AS L G + Sbjct: 59 EFIS---NTKASVILLHRSSNISIDSSKIVLECE----EDPEQLQGRIASFLLGHPSKTL 111 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK+S+ + + + + G IG + D TTP L L Sbjct: 112 EIVAVTGTNGKTSLTNILFALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASSLNLIL 171 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + +GVT V +EASSHGL R+ GI L AG FTNL +DH+D+H + YF +K RLF Sbjct: 172 KQMKDEGVTTVFMEASSHGLKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFESKFRLF 231 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E L +SP + + + R L + KV Q T Sbjct: 232 EILDVSKSPFAVLDYSSPGGNELHRKIRNNLPDLPIKALDGIGGEYKVSNPFLTLQGTSY 291 Query: 295 ----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + L G F V N +A + +G+D + L+++ +PGRF+ V Sbjct: 292 VLSLPGNRSQTISTNLLGSFNVRNTALAFLTGLGLGLDPKGMFSSLKEIPQIPGRFQIVY 351 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + R VDYAHT ++LE I++++R R+I +FGCGGDRD+ KRP M +IA +L+ Sbjct: 352 SKDRSRMAVVDYAHTPDALENIIRSVRNSRPKRLITLFGCGGDRDKTKRPKMARIAEELS 411 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D I+T DNPRSE PE I EI G + + +R AI + +L + L+VAG Sbjct: 412 DQVILTSDNPRSEKPEAILDEIQSGFSPGFTPLLREVDRARAISEGVGILPEGGCLLVAG 471 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE I+ EK+ D + +R+ GL Sbjct: 472 KGHEEYQIIG-KEKRHFSDVEEVRKAFGL 499 >gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 15998] gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 11379] gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] Length = 491 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 154/506 (30%), Positives = 234/506 (46%), Gaps = 28/506 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DL+ + I V+ D+ + G +F A+ G+ G Sbjct: 1 MKLSDLMAGQDHHALRGTPDR------TDITAGVTFDADRVTPGSVFAAVPGHAAGGPHA 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + A+A+GA A++V + + V + RK ++ ASR +G+ + Sbjct: 55 VAPAVARGAVAVLVDEQAP---PLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 +A+TGT+GK+SV+ + + + IG + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQY 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK+R Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF A++ ADD + K A G + + + T Sbjct: 232 LF---QGLCRRAVVNADDPLGAGIRKLMAGAVTTYALDGDADY--RASDLTVDASGSRFT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ + P PG F V NAL C +G A +++ LE++ +PGRFE + Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL-QI 345 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA +D+ Sbjct: 346 PGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRAEMGAIAGTHSDL 405 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T DNPR EDPE I +I GI F +R AI A+ D++++AGKG Sbjct: 406 CVLTSDNPRYEDPEAILDQIAEGIASTGTPFERLTDRRPAIAAALAEAGPDDIVLIAGKG 465 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E + GE D +RE++G Sbjct: 466 SEPHQSI-RGELLPFSDMATVRELIG 490 >gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 529 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 143/509 (28%), Positives = 224/509 (44%), Gaps = 22/509 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L ++ W + +I V+ S + W+FVAI G + G F Sbjct: 19 LTSVLPGSAVRAAYGPDGAETAWADLGTRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFA 78 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A GA A++ +A + + S + P++VVD+ R ++ A+ +YG + L Sbjct: 79 RAAKEAGAVAVLTDAAGASRAVSEGL--GLPVVVVDDPRSHVAALAAAVYGHPARDLVTL 136 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++ + ++ + G T + + TT + + L+ Sbjct: 137 AVTGTNGKTTTSYLMRAALAAVHPRAALCGTVETRVGPVSFEAERTTAESPVVQRFLALA 196 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E S+H L HR+DG+ +FTNL DH+DY+ + YFNAK LF Sbjct: 197 RECGEGAAVIETSAHALSLHRVDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFTP- 255 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---S 294 A++ DD + + + A V ++ ++ + + Sbjct: 256 -EHAKRAVVCVDDEWGRRLAASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVD 314 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G + P+ GE V N VA +A G+ L LE +PGR E V Sbjct: 315 PDGTGHEVRMPILGEVNVQNTAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKVNPVPG 374 Query: 355 GGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT +LE L++ R +T+GR+ +VFG GDRD KR + IA AD+ Sbjct: 375 NQPLVVVDYAHTPEALEWTLRSTRELTAGRLHIVFGTDGDRDASKREHLAGIAAAGADVL 434 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 VTD+NPR+EDP+ IR ++ GI R +A+R AI D +++ Sbjct: 435 WVTDENPRTEDPQSIRDYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIIT 494 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKG E V G K D + RE+L Sbjct: 495 GKGAEWYQEVE-GIKHRYNDVPVAREVLE 522 >gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] Length = 496 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 145/493 (29%), Positives = 221/493 (44%), Gaps = 25/493 (5%) Query: 11 FPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 PE++ +L + + ++ DSR ++AG ++ A+ G G F +A ++GA Sbjct: 14 LPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGA 73 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 A++ + P +VV + R+ L AS +YG E ++ VTGT+GK Sbjct: 74 VAMLSDRTSDV----------LPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGK 123 Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +S + + +G + G T ++ TTP L + L+ + Q + V Sbjct: 124 TSTVYLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAV 183 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSHGL HR+DG G FTNL RDH+D+H AYF AK RLF+ + A Sbjct: 184 AMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFDP---RHCAAA 240 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + S IH V A T+ G Sbjct: 241 AIGIDDEFGRRLAATVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLR 300 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G QV NAL A + G+D + +E L VPGR E V +VDY H Sbjct: 301 LLGVHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAGQ-PFFAFVDYMHN 359 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + + +R++T+GR+I V G G+RD GKR +G A AD +VTD++P SED Sbjct: 360 TAGQRRLFPYLRSLTAGRVIAVVGATGERDPGKRAPLGATAARFADAVVVTDESPYSEDA 419 Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +++R ++ G + +R EAI A+ + DV+VVAG+GH+ V + Sbjct: 420 QRLREDVARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAGRGHDRVQAYGPRRR 479 Query: 481 KMSVDCDIIREIL 493 D + E L Sbjct: 480 V-FDDRIALHEAL 491 >gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] Length = 497 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 142/504 (28%), Positives = 224/504 (44%), Gaps = 23/504 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M++ EL +QL + +I ++ DSR ++ G ++ A+ G + G F+ Sbjct: 1 MRIS---ATPLAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA GA A++ A + + +A + P LVVD+ R + A+ +YG + + Sbjct: 57 TQAAGLGAAAVLTDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQI 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGTSGK++ A V+ + + + I + TTP L + + Sbjct: 113 GITGTSGKTTTAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMR 172 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G V++E SSH L R+D FTNL +H+++H + YF AK +LF Sbjct: 173 ERGTEAVAMEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKR 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + DD Y + + K A + G+ +V T+ Sbjct: 233 SRLGVVN--VDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKG 290 Query: 299 D-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F V N L A A G+D + + + VPGR E V + Sbjct: 291 ERIAAKSPLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV-DEGQPFF 349 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH ++++E +L+ +R +T G++ V GCGGDRD KR MG AD A++T Sbjct: 350 AVVDYAHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTS 409 Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 DNPRSEDP I A ++ G +R AI A+ D ++VAGKGH Sbjct: 410 DNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGH 469 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G + D ++RE + Sbjct: 470 EQGQDIA-GVVRPFDDRQVLREAI 492 >gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] Length = 496 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 230/477 (48%), Gaps = 20/477 (4%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + + +++S+ +FVA+VG +DGH F+ +AIA GA AI+ A Sbjct: 8 LGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA------ 61 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140 + + P+ +V+NT+ + L G + + + VTGT+GK++V +Q I + + Sbjct: 62 ---LPTTRPVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIMETA 118 Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + Q TTP+ LA LS + G TH VEASS L + RL Sbjct: 119 GATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRDRL 178 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DGI+L A + TNL +DH+D H + Y AK L + A++ ADD+ +++ + Sbjct: 179 DGIELDAVAITNLRQDHLDVHGSVTNYHRAKK-KILGRLRETGFAVVNADDSACNKLLSQ 237 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V G I V ++Q +S + + G+ VYN LVAA Sbjct: 238 IETPALSVALHG--AAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYNCLVAA 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + + G+D V+ LE++ +PGR + + ++VD AHT ++L M LK +R + Sbjct: 296 AVGLVYGVDLKTVVRGLERVDSIPGRMQRIECGQ-PFGVFVDLAHTHDALAMALKALRRV 354 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 T GR+I V+G G D KRP++G++A AD++++T NP E P ++ +I+ G Sbjct: 355 THGRVICVYGADGLGDPSKRPLLGRVAERGADLSLITSANPGDESPLEVIHDILDGYERP 414 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 NR AI A+ D +++AG+G + + E+ D I + L Sbjct: 415 ARAHVMPNRAAAIEWALSEAQTGDTVLIAGRGTPNLQTLRE-EELPLDDVQIAQSWL 470 >gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6578] Length = 496 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 135/480 (28%), Positives = 216/480 (45%), Gaps = 22/480 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + ++ DSR +++G +F A+ G DGH F+ A+ +GA A+V + Sbjct: 15 DPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVVHERELP------SY 68 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 R L V N R+ LS ++ YG ++ ++ VTGT GKSS F+ Q+ + SG+ Sbjct: 69 REGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQLLRASGVKV 128 Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199 I R +TP ++ AL+ + G TH VEA+SHGL RL Sbjct: 129 GCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + ++ G TN+ +H+++H + + Y LP+E A++ DD S + +R Sbjct: 189 EDVRFTVGVLTNITHEHMEFHGSFEQYR-EDKGRLFRGLPEEGKAVLNLDDPSSGFLAER 247 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +G + + + + ++ Sbjct: 248 TRAGVWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWVPFPGRFNVENVLAAVL 307 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G A G + L H+ L VPGR E V + + VDYAHT + E +L +R Sbjct: 308 GAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAFEKLLPFVRRF 366 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 GR+IVVFG G+RD+ KRP+ G++A A++ ++TD++PR ED I EI G G Sbjct: 367 VEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAILREIAAGCEGL 426 Query: 440 IE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E +R EAI A+ M + D ++ GKGHE + G + +RE L Sbjct: 427 MEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEGPVAW-DEVGAVREAL 485 >gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] Length = 525 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 158/500 (31%), Positives = 231/500 (46%), Gaps = 24/500 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 EL L + + + VS DSR ++ G ++ A+ G G F QA +GA Sbjct: 20 ATAAELARALGAAAPE-EDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGA 78 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 + A + P LVVD+ R +L A+ ++G+ E + VTGT+GK Sbjct: 79 AMALTDPAG----RERCEAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGK 134 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQ 180 +SV + + + G+ + IG + T A TTP L L+ ++ Sbjct: 135 TSVTTAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAED 194 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GV VS+E SSH L HR D + FTNL +DH+D+H T +AY+ AK LF + Sbjct: 195 GVEVVSMEVSSHALVLHRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHAR 254 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 DD + + + + A + ++ A V + Sbjct: 255 RGVV--CVDDDWGRRLAREAQIPVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGTR 312 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 LPG V N L A L AIG V++ L + VPGR E R V Sbjct: 313 TLHAALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRME--PVAHTPIRGVV 370 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 DY+HT ++LE L +R + +GR++VV G GGDRD+ KRP+MG++A AD+ +VTDDN Sbjct: 371 DYSHTPDALEQALLTLRAVPGTGRLLVVMGAGGDRDRAKRPLMGEVAARYADVVLVTDDN 430 Query: 420 PRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 PR+EDP IRAE++ GIP + R EAI A + + D ++VAGKG ET Sbjct: 431 PRTEDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGKGAETGQQ 490 Query: 475 VTNGEKKMSVDCDIIREILG 494 + G D +R+ L Sbjct: 491 IG-GIVHPFDDRLRLRDALR 509 >gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] Length = 483 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 225/502 (44%), Gaps = 29/502 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK +I F ++I+ +S + + I +++DSR FVAI G+ DGH + Sbjct: 1 MK-GKIILISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTY 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I AI +GA I+ + + ++ + V++ RK L+ ++ +Y + + Sbjct: 60 IASAIKKGASLIIHTEDVTCEE-------GISYIRVNDPRKALAQISNLIYDFPSKKMEL 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176 +AVTG++GK++ + + + S IG + TTP + + L+ Sbjct: 113 VAVTGSNGKTTTSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAK 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + H+++EASSHGLDQ RL G+ + G FTNL +H+DYH+T YF AK Sbjct: 173 CLEKNIHHLALEASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAK-----M 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +L + + + D + K + V IS + Sbjct: 228 ILFENAKNTLANIDDPYGKRAKELFPKTITFAIDEESADYRAEDIVKKDG-----KISFK 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + +F+ +++YN L A +G + E +K + RFE N G Sbjct: 283 IRGVEFVLNKIANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFE-YIENDLGI 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I +D+AHT + E + +++ II VFG GDR+ R ++G +++T Sbjct: 342 NIILDFAHTPRAYEALFESVPK--GSNIIAVFGINGDRNSEFRRLIGNACGKYKVFSVLT 399 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+P+ ++ + I EII G+ ++ + R +A+R AI+M D + + GKG E Sbjct: 400 TDDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKGEENF 459 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 EK + + +RE+L Sbjct: 460 IKFHGNEKTPYSERETLREVLE 481 >gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] Length = 505 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 223/471 (47%), Gaps = 18/471 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR + +FVAI + +I A+AQGA A++V + + + + + Sbjct: 38 LVQDSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAA-----EGVELDKQV 92 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + N + + A G ++ + +TGT+GK+S A + Q Q+ G++S IG Sbjct: 93 FAIANLHEVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTL 152 Query: 151 S--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + +TTP + + L GV +V++E SSH L+Q R+DG+ + Sbjct: 153 GAGITGERRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIVA 212 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266 FTN RDH+DYH T + Y A + LP + A++ DDA ++ G R Sbjct: 213 FTNFTRDHLDYHGTMEEY--AAQKAKIFTLPGVTTALLNLDDAAAENHFHNTLPEGMRGI 270 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + S G+ + V + + +EG+ + L G F V N L A + A Sbjct: 271 GMTSRGHSEASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQ 330 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI+ + E L L V GR + N + + VD HT +++ + +R RI+ Sbjct: 331 GIEPQAIAEALAPLEPVLGRMTRIRENDKLPLVVVDAGHTPDAVRQAVTALRESGHTRIV 390 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 VFG GDRD GKRP M +I + +D+ +VTDD+ +ED ++I A I G IE Sbjct: 391 TVFGATGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERVIEI 450 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI AI+ N DV+++ GKGHE I+ N E+ D D +L Sbjct: 451 RDRASAIAYAIDAANPDDVVLLQGKGHEPYQIIGN-ERVPFSDLDTAIRLL 500 >gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] Length = 506 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 141/494 (28%), Positives = 221/494 (44%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +QL + +I ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ A + + +A + P LVVD+ R + A+ +YG + + +TGTSGK++ Sbjct: 76 VLTDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + + I + TTP L + + +G V++E Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+D FTNL +H+++H + YF AK +LF + Sbjct: 192 VSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRSRLGVVN--V 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307 DD Y + + K A + G+ +V T+ + PL Sbjct: 250 DDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A A G+D + + + VPGR E V + VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV-DEGQPFFAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +L+ +R +T G++ V GCGGDRD KR MG AD A++T DNPRSEDP Sbjct: 369 AVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G +R AI A+ D ++VAGKGHE + G Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 488 VRPFDDRQVLREAI 501 >gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] Length = 526 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 132/478 (27%), Positives = 215/478 (44%), Gaps = 20/478 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ S ++ W+FVAI G K+ G F AI GA ++ Q F + Sbjct: 46 RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GV 103 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V + R + + +Y +AVTGT+GK++ + ++ ++ G Sbjct: 104 PVIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCG 163 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + + TT +A+ L+ +E S+H L HR+DGI Sbjct: 164 TVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHRVDGIVFDVA 223 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL DH+DY+ + YF AK LF + DD + + + ++A V Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGVV--CVDDEWGRRLAQQATVPVTTV 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIA 324 ++ + ++ V + ++ P+ GE + N VA ++ Sbjct: 282 SALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAVS 341 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383 +GID A V+ +E +PGR E V G + VDYAHT +LE L++ R +TSGR Sbjct: 342 LGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEALEWTLRSTRELTSGR 401 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439 +++VFG GDRD KR + +IA AD+ VTD+NPR+E P++IR ++ GI Sbjct: 402 VVIVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRNYLLRGIASVRPGM 461 Query: 440 ----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +A+R AI D +++ GKG E + G D + E+L Sbjct: 462 EDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEIQ-GIHHRYNDVPVAAEVL 518 >gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Marinomonas sp. MED121] gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Marinomonas sp. MED121] Length = 499 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 145/499 (29%), Positives = 237/499 (47%), Gaps = 21/499 (4%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I E L + + + +++DSR++ +F A+ G +G ++ AQ Sbjct: 8 IKSHLVEAFFGLKTGQLSSFD-EFEYLATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQ 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G + + ++ V +T ++ F ++ +P +I AVTGT+GK Sbjct: 67 GCR-----VVVVPEVVKLDETLDLAVIRVPDTLMSMTAFITKFALPYPSSICAVTGTNGK 121 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 SS++ + QI + LSS +G + + TTP + + +SQGV H+ Sbjct: 122 SSISYYSAQIAKAINLSSAIVGTFGVGLLDDLKPSEQTTPDLLSMHTLAITFASQGVEHM 181 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + EASSH LDQ R++G+ + ++NL RDH+DYH + AY AK +LF K + Sbjct: 182 TFEASSHALDQGRIEGLPIETAIYSNLSRDHLDYHGSMAAYAEAKAKLFRFPQLKRAVIC 241 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I D ++M A S+ ++ + + ++ + + V GK + P Sbjct: 242 I---DDEYSDIMLDAAACPVYSYSLQHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLP 298 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L GEF V NA+ A D A ++ L L PGR + V + +DYAHT Sbjct: 299 LLGEFNVANAIAALAAHWDQVEDKAQLISALSLLSGAPGRMQMV-NLQSAPLVVIDYAHT 357 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E+ LK +R GR+ ++GCGGDRD+GKRP+M + AL +DIA +T DNPR+E Sbjct: 358 PSAIEVALKALRLHNKGRLTCIYGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESV 417 Query: 426 EKIRAE---IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 +I + ++ +E +R AI I DV+++AGKGHE + Sbjct: 418 AQILDDALIMLENKDALVEQGSLHILPDRRAAIFDVIAKAQSDDVILIAGKGHENYQDI- 476 Query: 477 NGEKKMSVDCDIIREILGL 495 +G K D ++ E L L Sbjct: 477 DGVKHHFDDAEVALEALTL 495 >gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] Length = 503 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 138/504 (27%), Positives = 221/504 (43%), Gaps = 29/504 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ PE + + ++ ++ DSR +++G +F A+ G DGH F+ Sbjct: 5 LSSLLDAIKPEEVRGGG-------DPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVED 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+ +GA A+V + R L V N R+ LS ++ YG ++ + V Sbjct: 58 ALGRGAVAVVHERELP------SYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177 TGT GKSS F+ Q+ + SG+ I R +TP ++ AL+ + Sbjct: 112 TGTDGKSSTTYFIYQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARM 171 Query: 178 SSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G TH VEA+SHGL RL+ ++ G TN+ +H+++H + + Y Sbjct: 172 REAGCTHAVVEATSHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYR-EDKGRLF 230 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LP+ A++ DD S + +R +G + + + + Sbjct: 231 RGLPEGGKAVLNLDDPSSGFLAERTRAGVWGYGLGTREGARLWAEVREESLAGSRCLVHG 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 ++ G A G + L H+ L VPGR E V + Sbjct: 291 RETLEVWVPFPGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQP 349 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT + E +L +R GR+IVVFG G+RD+ KRP+ G++A A++ ++ Sbjct: 350 FLVLVDYAHTPGAFEKLLPFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVL 409 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 TD++PR ED I EI G G +E +R EAI A+ M + D ++ GKGH Sbjct: 410 TDEDPRGEDRMAILREIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGH 469 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G + +RE L Sbjct: 470 ERSIVTAEGPVAW-DEVGAVREAL 492 >gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] Length = 476 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 132/502 (26%), Positives = 214/502 (42%), Gaps = 35/502 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL DL+ K + + K+ V+++S + G+IFVA+ G+ DGH +I Sbjct: 3 KLSDLVRKIEY-------LDVKHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYID 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 +AI +GA+A+V + R + + V + R+ L+ ++ + E ++ Sbjct: 56 EAIKKGAKAVVHTEDVE-------YREDITYIRVFDPRQTLAEISNLITDFPSEKLSVIG 108 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + + + ++ IG + TTP + + L Sbjct: 109 VTGTNGKTTTSKLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKCV 168 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G+ +V++EASSHGL Q RL G++ G F NL +H+DYH+T A + L Sbjct: 169 EKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMD----AYFKAKMILF 224 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I DD + K + + I + I Sbjct: 225 ENSEITIANIDDPWG---KKAVELFPTTLSFGKDEKANIRATDISKTDKGISFKIDG--- 278 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 DF +F++ N L A ++G + E + V RFE N +G I Sbjct: 279 -VDFFIRTIADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFE-YIENDKGLNI 336 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+AHT + E I K++ + I VFG GDR+ R ++GK D AIVT D Sbjct: 337 IVDFAHTPRAFEEIFKSLPR--DKKKIAVFGIQGDRNPEFRNLIGKTVSDYGIYAIVTTD 394 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +P+ + E I +I+ G+ + +R EAI + M D ++ GKG E Sbjct: 395 DPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMGKGEENFIK 454 Query: 475 VTNGEKKMSVDCDIIREILGLI 496 + EK + IRE L I Sbjct: 455 LHGNEKTPWNEKATIRETLEKI 476 >gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753] gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753] Length = 492 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 218/501 (43%), Gaps = 29/501 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+DL+ + + + +N+V DSR ++ G +FV ++G+ D H + Sbjct: 5 KLKDLLEGVGYKCLQGDD-------QVLVNDVVYDSRRVRPGCVFVCLIGSAVDSHQYA- 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 V + A ++ + +++V++TRK ++ ++ L+G + Sbjct: 57 -------AQAVEAGAAAVVASRQLELAKGTLVLVEDTRKAMAYMSAALFGHPAAKLKTVG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178 +TGT GK++ A ++ I ++ G+ + IG I TTP + K L+ + Sbjct: 110 ITGTKGKTTTACMIKTILEKGGIKTGVIGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMV 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G +EASS GL HR DG+ G FTN DHI + + + L Sbjct: 170 EEGCQCAVMEASSLGLKWHRTDGLVFDYGVFTNFSPDHIG--ENEHSCLEEYAACKGLLF 227 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVE 296 ++ DD + ++K Q + + + Sbjct: 228 QSCKLGLVNIDDPACETILKDHTCELETFGFSNPQAQLKGSNEGLIYRPGYLGAHFDVSG 287 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +PG+F YNA+ A +C + + V GR E V Sbjct: 288 AMKLSVDVDIPGKFSAYNAIAAIAVCRHFPVS-EQNILDGLNEVKVKGRVEPVKVPG-NY 345 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + S+E IL +R R++ +FG GG+R + +R MG+++ LAD+ ++T Sbjct: 346 TLLIDYAHNAVSMENILTTLREYQPHRLVCMFGAGGNRAKSRRYEMGEVSGRLADLTVIT 405 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +DN R E+ I +I G+ I NR +AIR IE + D++V+AGKGHE Sbjct: 406 EDNSRFENVMDIIQDIQTGMAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKGHEDY 465 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G K+ + +I+ +IL Sbjct: 466 QEIK-GVKRHFDEREIVADIL 485 >gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] Length = 526 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 134/478 (28%), Positives = 215/478 (44%), Gaps = 20/478 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ S ++ W+FVAI G K+ G F AI GA ++ Q F + Sbjct: 46 RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GV 103 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V + R + + +Y +AVTGT+GK++ + ++ ++ G Sbjct: 104 PVIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCG 163 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + + TT +A+ L+ +E S+H L HR+DGI Sbjct: 164 TVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHRVDGIVFDVA 223 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL DH+DY+ + YF AK LF + DD + + + ++A V Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGVV--CVDDEWGRRLAQQATVPVTTV 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIA 324 ++ + ++ V + ++ P+ GE + N VA ++ Sbjct: 282 SALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAVS 341 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383 +GID A V+ +E +PGR E V G + VDYAHT +LE L++ R +TSGR Sbjct: 342 LGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEALEWTLRSTRELTSGR 401 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439 ++VVFG GDRD KR + +IA AD+ VTD+NPR+E P++IR ++ GI Sbjct: 402 VVVVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRDYLLRGIASVRPGM 461 Query: 440 ----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +A+R AI D +++ GKG E V G D + E+L Sbjct: 462 EDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEVQ-GIHHRYNDVPVAAEVL 518 >gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] Length = 498 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 133/504 (26%), Positives = 220/504 (43%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + D+I ++ + + +N +S DSR I G +FVAI G DGH FI Sbjct: 1 MNILDIIDNI------KIKTIYGKLPD-SVNSISQDSRKIGKGDVFVAIKGYTVDGHNFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118 + I QGA ++ S + N +LVV K S+ A ++ + + Sbjct: 54 EKVIEQGAALVIASR------YENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176 AVTGT+GK+S+++ V + + G SS IG TTP + L + Sbjct: 108 AVTGTNGKTSISTLVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234 L + + +++ EASSH + R+ + + FTNL +H+D+H Q Y + + Sbjct: 168 LRHENIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290 E+ + D +++ + S+ + + + K Sbjct: 228 LGNNLSEAKFGVLNKDDSYYKIISKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTS 287 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T+ F+ G+F V N L A G ++ L KL + GR E +G Sbjct: 288 FTLKSPEGTFECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILG 347 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I D+AHT + E +L+ R I G R ++V G GG RD K P++G+I + Sbjct: 348 -DDLPIDIISDFAHTPDGYEKLLEATREIRKGKRTLLVTGMGGGRDISKGPLIGEIISE- 405 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD ++T D+PR ED E + I G+ + + R +A++ IE+ DV+++A K Sbjct: 406 ADYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASK 465 Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491 G E I+ G+K D + E Sbjct: 466 GREDYEILQGGKKVWHSDPIVAVE 489 >gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] Length = 477 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 227/494 (45%), Gaps = 28/494 (5%) Query: 11 FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F ++I+ +S + ++ I +V++DSR + G IFVAI G+ DGH +I AI +G+ Sbjct: 4 FEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEKGSS 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 I+ ++ ++ + V + RK L+ ++ +Y + + +AVTG++GK+ Sbjct: 64 LIIHTADIKREE-------GISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKT 116 Query: 128 SVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + + + G S+ + + TTP + + L+ + + H++ Sbjct: 117 TTSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLA 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASSHGLDQ RL G+ + G FTNL +H+DYH+T YF AK ++ E+ Sbjct: 177 LEASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAK------MILFENAKTT 230 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 A+ + + ++ + + + + IS + K +F+ Sbjct: 231 IANIDDPYGKKAKELFSNTVTFAIDEKNADYRAEDIRK----EDGKISFKIKGCEFVIRK 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 +++YN L A +G + +K V RFE N G I +D+AHT Sbjct: 287 IANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFE-YIENDLGINIILDFAHTP 345 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + E + +++ + I VFG GDR+ R ++G A++T D+P+ +D + Sbjct: 346 RAYEALFESVPE--GAKKIAVFGINGDRNAHFRRLIGNACGKFDTFAVLTTDDPKFDDID 403 Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I EII G+ ++ K +R +A+ A D + + GKG E EK Sbjct: 404 HINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKGEENFMKYHGNEKTP 463 Query: 483 SVDCDIIREILGLI 496 + + I++ L I Sbjct: 464 YSERETIKKALARI 477 >gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] Length = 536 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 147/525 (28%), Positives = 226/525 (43%), Gaps = 49/525 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K E+ P W ++ + S+ ++ G +F A+ G K G F A Sbjct: 5 KQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAAD---SKA 59 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 A++ +A A P +VVDN RK++ A+ +YG + +TGTSGK Sbjct: 60 AAVLTDAAGQRIIDDAPTP--LPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + V++ SGL IG T T + LTTP L L+ + ++GVTH+ Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243 +E SSH L R+ G+ +FTNL +DH+D+H T + YF AK E Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237 Query: 244 AIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 A++ +D + + + A + G + + A + +Q + +S Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297 Query: 295 V----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHVVPGRFE 347 + E ++ D+ + G F N+LVA A+ + VPGR + Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK 404 V + VDYAH +++ +L ++ RI +V G GG+RD KR IMG+ Sbjct: 358 LV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------------FIEKGNRIEA 448 IA +LAD VTDDNPR E+P IR I G +R EA Sbjct: 417 IAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEA 476 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I A+ D +VVAGKGHE +V G+ D + + L Sbjct: 477 IAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520 >gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] Length = 536 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 148/525 (28%), Positives = 227/525 (43%), Gaps = 49/525 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K E+ P W ++ + S+ ++ G +F A+ G K G F A Sbjct: 5 KQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAAD---SKA 59 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 A++ +A AT P +VVDN RK++ A+ +YG + +TGTSGK Sbjct: 60 AAVLTDAAGQRIIDDATTP--LPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + V++ SGL IG T T + LTTP L L+ + ++GVTH+ Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243 +E SSH L R+ G+ +FTNL +DH+D+H T + YF AK E Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237 Query: 244 AIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 A++ +D + + + A + G + + A + +Q + +S Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297 Query: 295 V----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHVVPGRFE 347 + E ++ D+ + G F N+LVA A+ + VPGR + Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK 404 V + VDYAH +++ +L ++ RI +V G GG+RD KR IMG+ Sbjct: 358 LV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------------FIEKGNRIEA 448 IA +LAD VTDDNPR E+P IR I G +R EA Sbjct: 417 IAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEA 476 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I A+ D +VVAGKGHE +V G+ D + + L Sbjct: 477 IAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520 >gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] Length = 492 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 205/474 (43%), Positives = 271/474 (57%), Gaps = 19/474 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A ++ T Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI R G Sbjct: 76 EDLPEATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRD 135 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G +++ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+ Sbjct: 136 SASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L A +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319 AG + + G G FI L + Q +T+S GKD+ P A A Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLA 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A D A V LE L VPGR E +G + G VDYAH +LE +L +R Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 SGR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R EAIRT + L DVLVVAGKGHET IV D D +R + Sbjct: 435 EEIGDRAEAIRTGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487 >gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella cf. novicida 3523] Length = 475 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 138/490 (28%), Positives = 225/490 (45%), Gaps = 21/490 (4%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ +++ L I + +I +S DSR W FVA+ G DG+ +I +A+ Sbjct: 2 KNINQILKFLDIQTLSQNNFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDI 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++ S I + N ++ LS A Y K P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDSH--------EFEDQKRIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + + Sbjct: 114 SISSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYHKNYQN--LV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R +G+ F+NL DH+DYH++ YF AK +LF+ AII Sbjct: 172 MEVSSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQF--KSLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + + V K + ++ L Sbjct: 230 NIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F + N ++ + + L + V GR E + +I +DYAHT Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKSVKGRMEVI-ELDNDIKIVIDYAHTP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ + + +FGCGG+RD KRPIM +IA + A +VT+DN R E+ E Sbjct: 347 DALEKALQTLANYNPNNLWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNNRFENIE 406 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G +R +AIR +IE N+ D++++AGKGHE NG K+ Sbjct: 407 NIFSDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGIKEYF 465 Query: 484 VDCDIIREIL 493 + +II+ +L Sbjct: 466 DEREIIKNML 475 >gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 5701] gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 5701] Length = 508 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 146/497 (29%), Positives = 221/497 (44%), Gaps = 25/497 (5%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P Q + + +S DSR + AG +F+ + G++ DG F P A+ + Sbjct: 16 IPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALE---RGAAAALIGPAA 72 Query: 81 DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 P+LV+++ ++ A+ + + + VTGT+GK++ ++ + Sbjct: 73 AAQCPPGPADPVLVLEDPVAEWAGRLAASFWHDPSRRLALIGVTGTNGKTTTTHLIEHLS 132 Query: 138 QRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S+ G + + TT L L+ G ++E SSH LDQ Sbjct: 133 AGCGKSTALFGTLINRWPGHSVTASHTTAFADVLQGQLARAVEAGAQLAAMEVSSHALDQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ G FTNL +DH+DYH + +AY AK RLF L S A++ DD + + Sbjct: 193 RRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARLFSSELLDGS-AVVNIDDPWGARL 251 Query: 257 MKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 +R L + L + + T+ F P Sbjct: 252 AERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDDLVFAADGVSGTLITPLGCGAFRSP 311 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYA 363 L G F + N L A G+ G+ A +LE + VPGR E V + VDYA Sbjct: 312 LVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRGVPGRMERVMLPEAAELPAVLVDYA 371 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT + LE L R G+++ VFGCGGDRD+GKRP M IA LAD +VT DNPR+E Sbjct: 372 HTPDGLENALAACRPFARGQLVCVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTE 431 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP++I +++ GIP + +R AI A+ M D++++AGKGHE I+ K Sbjct: 432 DPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMAGPSDLVLIAGKGHEDYQILGT-TK 490 Query: 481 KMSVDCDIIREILGLIL 497 D + + L L Sbjct: 491 VHFDDREEAEKALRARL 507 >gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] Length = 487 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 214/490 (43%), Positives = 287/490 (58%), Gaps = 19/490 (3%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P L + R + +++DSR + G +FVA+ G DG LF A Sbjct: 4 PTLADLFPEADAAIAARPVAGLTADSRRVVPGGVFVAVPGTAADGRLF---------AAA 54 Query: 72 VVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 + T ++ P + V R+ L+L A+RL G+ PE ++AVTGTSGKS Sbjct: 55 AARAGAVAVAGEGTRPTDLPEATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKS 114 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVS 186 SVA FV+QI R G S +G +++ + LTTP P+ L + L+ L+ +G+T ++ Sbjct: 115 SVADFVRQILSRLGRESASLGTVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLA 174 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASSHG++Q RLDG+ L A +FTNLGRDH+DYH T + Y AK+RLF LLPK PAI+ Sbjct: 175 MEASSHGIEQRRLDGVALTAAAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIV 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 AD AY++ V+ A AG VL+ G G FI L + + Q +T++ +G+++ PL Sbjct: 235 NADGAYAERVIGVADAAGHTVLTTGRSGDFIRLIESGTVGFSQSLTLAHDGREYRVRLPL 294 Query: 307 PGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G FQV NALVAAGL ++ D A V LE L VPGR E +G + G VDYA Sbjct: 295 VGGFQVENALVAAGLALSTQAGAADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYA 353 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +LE +L +R SG+++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E Sbjct: 354 HKPEALEHVLTALRPFASGQLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNE 413 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +P IRA I+ PG E G+R EAIR + L DVLVVAGKGHET IV + Sbjct: 414 EPAAIRAAILAAAPGAEEIGDRAEAIRAGVRGLRAGDVLVVAGKGHETGQIVGS-RVLPF 472 Query: 484 VDCDIIREIL 493 D D +R + Sbjct: 473 SDHDTLRAAI 482 >gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] Length = 514 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 162/490 (33%), Positives = 241/490 (49%), Gaps = 36/490 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I ++ DSR + +G F+A+ G +DGH ++P+A GA +V + + Sbjct: 25 VSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIVEDEAAARVI----- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P +VV + R+ +L A+ + AVTGT+GK++ ++ + +G + Sbjct: 80 -DMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRAA 138 Query: 146 QIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG LTTP P+ L + L L+ +GVT V++E SSH L QHR+D Sbjct: 139 SIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAMETSSHALHQHRVD 198 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ A FTNL RDH+DYH T +AY +AK+ L L + A DD + + Sbjct: 199 GVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSL-LAPDGVACFNIDDVTWQHTVAEM 257 Query: 261 HNAGCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +G + + + + +V + PL G+F Sbjct: 258 DVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGTTQHQVTLPLIGDF 317 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL AA +A+GI V + L + VPGR E + T + DYAHT ++LE Sbjct: 318 NVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEPT---VLRDYAHTPDALE 374 Query: 371 MILKNIRTITSG------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 L +R T R+IVVFGCGGDRD+GKRP+MG IA LAD+ IVT DNPR+ED Sbjct: 375 RALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAERLADVTIVTSDNPRTED 434 Query: 425 PEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 PE+I +I G+ +R +AI A+ M + DV+V+AGKGHET + Sbjct: 435 PERILDDIEAGMTRRDHQRIVDRRDAIAAALRMASAHDVVVLAGKGHETYQ-IRGTTSYP 493 Query: 483 SVDCDIIREI 492 + I++E+ Sbjct: 494 FDERIIVQEL 503 >gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] Length = 481 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 138/496 (27%), Positives = 219/496 (44%), Gaps = 36/496 (7%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65 P L +F ++ V+ DSR +Q G++FVAI G DGH +IPQAI Sbjct: 2 PTLQELFGLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAIQ 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 GA A+V + + P L V + R L+ ++ +G + + L VTG+ Sbjct: 62 NGAVAVV---------GMRELHLSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQ 180 GK++VA + + QR+ ++ + TTP + + L Sbjct: 113 KGKTTVAVLLHHLLQRARPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHRFVQA 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G +E SSH L R+ G++ G FTNL +DH+D H + + YF K +L L + Sbjct: 173 GCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKL----LER 228 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ +D+ +++ + R Q + + + F Sbjct: 229 SRFAVVNSDNPWTQTLRGRPQTWSY------GQQGDWQAHNLVESSTGLEFEVVSPMGRF 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G F NAL A +G+ + E L VPGR + V R+ V Sbjct: 283 AVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLVQAA--PFRVVV 340 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT SLE L+ +R T GR++VV G G++D +R +G++A LAD+AI T+++ Sbjct: 341 DFAHTGASLEAALQTLRPTTQGRLLVVIGAAGNQDPSRRVGIGQVAARLADLAIFTEEDH 400 Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+E E I + ++ +R EAIR AI+ D L+ +GKGHE Sbjct: 401 RTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSGKGHERTLE-RG 459 Query: 478 GEKKMSVDCDIIREIL 493 E + D +R L Sbjct: 460 TEAIPWNEVDEVRRAL 475 >gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A Synechococcus GOM 3M9] Length = 511 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 147/497 (29%), Positives = 222/497 (44%), Gaps = 32/497 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ---------AIAQGAEAI 71 P + + +++ DSR +Q G +F+ + G + DG F Q I G A Sbjct: 16 IPEGLPDPLLQQITCDSRAVQDGTLFLGLPGERVDGGRFWRQALEAGAAAAVI--GPSAA 73 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 V + + L A+ + + + + VTGT+GK++ Sbjct: 74 AVLPPAAHEPVVVVGEPVARQ---------LGELAAAFWEQPSSRLALIGVTGTNGKTTT 124 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + G + G + + TT L L+ +S G ++E Sbjct: 125 THLIEHLATAIGTPTALFGTLVNRWPGHSITATHTTGFADRLQGQLAAAASAGAQLGAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IY 247 SSH L Q R+ G + A FTNL +DH+DYH + QAYF AK LF + L + PA + Sbjct: 185 VSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPLLQSGPARAVV 244 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D + C S+ G + + + + + + F+ PL Sbjct: 245 NSDDPWGLQLAERLGDRCWRSSLSEPGAELRMSDLEMTARGVRGRLITPLGEGPFVSPLL 304 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYA 363 G F + N L A G+ + + +LE +E VPGR E V + VDYA Sbjct: 305 GRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADAHALPTVLVDYA 364 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT + LE L R + GR+I VFGCGGDRD+GKRP M IA LAD +VT DNPR+E Sbjct: 365 HTPDGLENALAASRPFSRGRLICVFGCGGDRDRGKRPQMASIAARLADRVVVTSDNPRTE 424 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP++I +++ GIP + +G+R AI AI +D+++VAGKGHE I+ +K Sbjct: 425 DPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLVLVAGKGHEDYQILGT-DK 483 Query: 481 KMSVDCDIIREILGLIL 497 D + L L Sbjct: 484 VHFDDREEAENALRARL 500 >gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] Length = 492 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 203/474 (42%), Positives = 271/474 (57%), Gaps = 19/474 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A ++ T Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI R G Sbjct: 76 ADLPEATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRE 135 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G +++ + LTTP P+ L + L+ L +G+T +++EASSHG++Q RLDG+ Sbjct: 136 SASLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L A +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319 AG + + G G FI L + Q +T++ GKD+ P A A Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLA 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A D A V LE L VPGR E +G + G VDYAH +LE +L +R Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 SGR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R EAIR A+ L DVLVVAGKGHET IV D D +R + Sbjct: 435 EEIGDRAEAIRAAVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487 >gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata] gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata] Length = 767 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 131/523 (25%), Positives = 236/523 (45%), Gaps = 45/523 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ + + I + +I + DSR + AG +FV VG++ F+ Sbjct: 241 MSLAELLDES-----KVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSES----FL 291 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A +GA A+V S ++D +++V++T L+ AS Y +N+ + Sbjct: 292 SEADKRGAVAVVASKEIDIEDTLGCKA----LVIVEDTNAVLAALASSFYRHPSKNMSVI 347 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKAL 174 VTGT GK++ ++ + + G+ + S N T P + + + Sbjct: 348 GVTGTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLM 407 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + G + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF Sbjct: 408 AKMLHNGTEALVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLF 467 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++ + D + + N ++ +H + QV Sbjct: 468 ARMVDPGRHRKVVNIDDPNATFFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVL 527 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + L G +YN L A + IA+G ++ +E++ VPGR E + Sbjct: 528 VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DE 586 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VD+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ Sbjct: 587 EQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDV 646 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIR 450 ++T DNPR+EDP I +++ GI ++ + + R A+R Sbjct: 647 TMLTSDNPRNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVR 706 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+ M + D++VVAGKGHE + +K+ D + RE L Sbjct: 707 CAVAMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748 >gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] Length = 501 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 147/476 (30%), Positives = 227/476 (47%), Gaps = 22/476 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +DSR ++AG FVA G DG ++ +A+ QGA A++V + A S Sbjct: 25 DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVEADG----LQAFDLSGDS 80 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SF 145 I + + L A + + ++LAVTGT+GK++ A ++ + L+ Sbjct: 81 IAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCA 140 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + + +TTP P+ L +A + QG+ ++EASS G+ +HRLDG K+ Sbjct: 141 LVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKI 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ + R Sbjct: 201 RVALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPAAVVNIDDAHGARLWARLQGRA 258 Query: 265 CRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V SV QG K + T+ G L G++ V N L Sbjct: 259 MDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLATLR 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---IT 380 +G+ ++ L VPGR + + + VDYAHT ++LE L+ ++ Sbjct: 319 CLGLTLEQAVQACADLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQR 377 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE PE I +I+ G+ Sbjct: 378 QGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVPESIIDQILAGMQAGQ 437 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI +DV+++AGKGHE G + D ++ L Sbjct: 438 ALHVQADRAAAIAQAIARAEARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAQKAL 492 >gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] Length = 479 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 185/495 (37%), Positives = 257/495 (51%), Gaps = 23/495 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ + ++ D R + G +F A VG + +G FI Sbjct: 1 MRLAALL-----------DDADWAGPNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFI 49 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ + A ++ + N R+ + A+R + + P +AV Sbjct: 50 PDAV--------AAGAVAVVARPDAKVDGAVHVADANPRRAFAHIAARFFHRFPATCVAV 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + +G ++ IG T S + LTTP + +S L+ Sbjct: 102 TGTNGKTSTVEMTRQLWRMAGFNAASIGTLGITTSVDSASTGLTTPDIVTFLSNMSGLAV 161 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH + EASSHGLDQ+R +G+ + A +FTNL DH+DYH T +AY AKMRLF E++ Sbjct: 162 EGVTHAAFEASSHGLDQYRTEGLPVKAAAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQ 221 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AI++ADDA+S V++ A RVL+VG G+ + L Q + I+ Sbjct: 222 PGGAAIVWADDAHSAAVIEAARARDVRVLTVGQAGEALRLVSRTPTQLGQLLVIAAGDVT 281 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G +Q NALVAAGL IA G D AL L +L +L V GR E G IY Sbjct: 282 HKVTLPLIGAYQAANALVAAGLVIATGGDVALTLANLARLQPVRGRLERAAIARSGAPIY 341 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT +++E L +R +GR+I+VFG GGDRDQ KRP MG++A AD+ I+TDDN Sbjct: 342 VDYAHTPDAIEAALDALRPHATGRLILVFGAGGDRDQAKRPEMGRVAAAKADLLIITDDN 401 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG- 478 PR EDP IR I PG G+R AI AI D++ +AGKGHE IV G Sbjct: 402 PRGEDPAVIRDAIAAAAPGAQVIGDRRAAIAAAIAAARADDIICIAGKGHEQGQIVGRGD 461 Query: 479 --EKKMSVDCDIIRE 491 D + RE Sbjct: 462 DMRVIPFDDVSVARE 476 >gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] Length = 515 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 142/504 (28%), Positives = 223/504 (44%), Gaps = 38/504 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ + I + DSR + G +FVA G DGHL+IPQ Sbjct: 5 LHDLLRTLC-------DPAHLPRANPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQ 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI +GA A+V D + R P L N R L+ A+ YG + + + Sbjct: 58 AIERGAAAVVYE------DPAWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ + G + +G + +A D+R +TP + L + Sbjct: 112 TGTDGKTTTTFLTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDM 171 Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN------- 228 G + VEA+SH L +RL G TN+ ++H+D+H T + Y Sbjct: 172 VHAGCAYAVVEATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFE 231 Query: 229 --AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 A+ + AI+ ADD + + A R+ + + + V + Sbjct: 232 MLAEFHDDATPFKQRKIAIVNADDPNHRMFLDAAPPYAERLTYAIHANADVCARNVRSTR 291 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + ++ D L G+F V+NAL A + A G+ ++ L LE++ V GR Sbjct: 292 DGLMFRVTTPWGAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRM 351 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E + + VDYAHT + E +++ +R +T G++IVVFG G+RD+ KRP+ G+IA Sbjct: 352 ERIEMGQ-PFTVLVDYAHTPGAFEKLMRIVRPLTDGQLIVVFGSAGERDRAKRPLQGEIA 410 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNK 458 D+ ++TD++PR ED E I AEI G+ + +R AIRTA Sbjct: 411 GRFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARP 470 Query: 459 QDVLVVAGKGHETVHIVTNGEKKM 482 D++++ GKGHE I Sbjct: 471 GDIVLLLGKGHEGSIIYGTTPMPW 494 >gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 524 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 167/538 (31%), Positives = 263/538 (48%), Gaps = 67/538 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------ 54 MKL++L++ + +I V+ + ++ G++FV + Sbjct: 1 MKLRELLHNII-----------DVNFDIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLE 49 Query: 55 ----------------DGHLFIPQAI---AQGAEAIV--VSSAYSLQDFSATIRSNTPIL 93 H + I + ++ + + + N + Sbjct: 50 SRKPACIQIFPTESQYHAHDCVDVVIQGTKKDVIPVLDYLDPENLIANEHTKQLHNKNWI 109 Query: 94 VV----------------DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQI 136 V N ++ SR Y K P+ + AVTGT+GK+SV F +QI Sbjct: 110 PVSATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQI 169 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 Q SG ++ IG T + +++ LTTP L L ++S+ V +++EASSHG Sbjct: 170 WQNSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHG 229 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 +DQ+R+ G++ A +FTN +DH+DYH++ YF AK RLF E+LP+ I+ AD Sbjct: 230 IDQYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINEY 289 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++K A +V++ G G I L + N Q +TI + + ++ FP+ G+FQ Y Sbjct: 290 HALLKIAEKRSNKVITYGKTGSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQAY 349 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A G+ + G + KL PGR E V +VDYAHT ++L+ L Sbjct: 350 NLLCAIGIVTSSG--LNYREISIGKLVSPPGRMEKVQP-----FAFVDYAHTPSALKQAL 402 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +++ + +I++VFGCGG+RD+ KR MGKIA AD I+TDDNPR EDP KIR +I+ Sbjct: 403 LSLKWHFNKKIVLVFGCGGNRDRKKRSEMGKIAQMYADKVIITDDNPRDEDPAKIRHDIL 462 Query: 434 HGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 P +E G+R EAI I++ N+ +L+VAGKGHE I+ N D ++I+ Sbjct: 463 LYCPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKGHEKFQIIGNQT-FEFSDVEVIK 519 >gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 501 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 146/511 (28%), Positives = 228/511 (44%), Gaps = 33/511 (6%) Query: 1 MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50 M L+DL + E++++L + R I V DSR ++ G ++ A+ Sbjct: 1 MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60 Query: 51 GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 G + G F +A A+GA A++ + P +VVD+ R L A+ Y Sbjct: 61 GRRHHGADFASEATARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110 Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSP 167 G ++ VTGT+GK+S ++ +GL + G T + TTP Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEA 170 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 L ++ +GV V++E SSHGL +HR+DG + G FTNL RDH+DYH +AY+ Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK RLFE L + + I D + S G ++ V A Sbjct: 231 AAKARLFERDLCERAAVCI---DDDYGRRLAAEVAVPHLTFSARDPGADVYATTVRAQRW 287 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ G+ + G QV NA+ A GID + +E L +PGR E Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + VDY H + + +R++T GRI+VV G G+RD GKR +G A Sbjct: 348 RVDVG-QPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406 Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 A++ +VTD++ S+D +R G + +R EAI A+++ D + Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AG+GH+ +V +G D +R L Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496 >gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 492 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 128/482 (26%), Positives = 224/482 (46%), Gaps = 16/482 (3%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ Q E +I ++ DSR + +F + G + DGH F+ AI GA A+V S Sbjct: 3 LNQLFKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEEL 62 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ 135 V++ L++ A Y + + + VTGT+GK S+A +Q+ Sbjct: 63 ------VHYEEGILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQE 116 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + + + T + LTTP+ I L L + G+ ++E SS G++ Sbjct: 117 VLNPDKATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVE 176 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ + FTNL +H+D+H T Q YF AK + F++ L +++ AI DD Y + Sbjct: 177 QKRVQSVHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDD-LDEKACAITNIDDPYGLK 235 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +++ + + +++ + + V +++D L F + N Sbjct: 236 MVEDSEARVVTYGM--SEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFNLMNL 293 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A G+ L+ E ++ L + G + + + + VD AHT + L +L+ Sbjct: 294 TAAIVALHESGVKMELIQERVKFLTQMEGHMQ-MIQEGQNFNVLVDIAHTVDGLSRVLEY 352 Query: 376 IRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +IT RIIVV G G RD+ KR +G + D+ I+T+++PR+E P +I EI Sbjct: 353 ATSITPKNCRIIVVNGSVGKRDKIKRQKVGNLMDQYCDMIILTEEDPRNESPREIAEEIA 412 Query: 434 HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 GI ++ +R +AIR A+E+ + +D ++V GKG++ G D I++E Sbjct: 413 KGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKGNQKFMERDIGRCSYQGDVIIVKE 472 Query: 492 IL 493 +L Sbjct: 473 VL 474 >gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] Length = 498 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 235/496 (47%), Gaps = 25/496 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++ E+ + ++ +S DS +++G +F A+ G + G F A A A Sbjct: 7 ENLAEIAGA-RVENAPESSLSVSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASDA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A++ A P+LVV+ R L A+ +YG E+ ++ VTGTSGK Sbjct: 63 SAVLTDDAGWDILRETGFER--PVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ +G + IG T T LTTP L + + + S+GVTHV Sbjct: 121 TTTTYLLESGLTAAGCAVGLIGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHV 180 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L R+DG K A FTNL +DH+D+H T + YF AK LF+ A+ Sbjct: 181 VMEVSSHALVLGRVDGTKFAAAGFTNLSQDHLDFHPTMEDYFEAKAILFDR----AEKAV 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DD + +++ +RAH+ + L V + +T+ + G+D P Sbjct: 237 VCIDDEWGQKMTQRAHSPVTVGVHNTSADCTARLDSVTESGAQ-DITVRIGGQDISTRIP 295 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG F + N +A L ++GID + L+ L+ V PGR E V VDYAH Sbjct: 296 LPGAFNIANTALATALADSVGIDPKVFLQGLDAARV-PGRMERVSVGQ-PFVAVVDYAHK 353 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ L ++R GRI VV G GGDRD KRP+MG A AD+ I+TDDNPR+EDP Sbjct: 354 PAAVAAALDSLREQVDGRIGVVVGAGGDRDHSKRPLMGAEAATRADLVIITDDNPRTEDP 413 Query: 426 EKIRAEIIHGIPGFI--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IRA + G I E +R +AI + D ++V GKGHE I+ Sbjct: 414 AAIRAAVKQGAESVIDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGKGHEVGQIIGE 473 Query: 478 GEKKMSVDCDIIREIL 493 D + + L Sbjct: 474 -TTHHFDDREEVAFAL 488 >gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] Length = 519 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 146/506 (28%), Positives = 232/506 (45%), Gaps = 36/506 (7%) Query: 11 FPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+++ L++ + ++ DSR + G +F A G + + FI QA+A GA Sbjct: 11 IGEILSALNLLVADNVGSVVARVITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAV 70 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +V + Y+ ++ +L + + + + I+ +TGT+GK+SV Sbjct: 71 LVVTEADYADPRVIRVEAVHSLVL------QMVGHVCAVNFDDL--TIIGITGTNGKTSV 122 Query: 130 ASFVQQICQRSGLSSF----QIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQ 180 A F+ RSG IG Q TTP + + Q Sbjct: 123 AQFIAGALSRSGAPHTASIGMIGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQ 182 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G +V +E SSH L+Q+RL G+ + FTNL RDH+DYH T YF AK +LF Sbjct: 183 GARYVVMEVSSHALEQNRLQGLPIRLAVFTNLSRDHLDYHGTMAEYFAAKTKLFAW---P 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--------VCAIHNKQQVT 292 A I D +V+ A A + G + + A+ N + Sbjct: 240 GLRAGIINFDEAQADVLFEALGATADCWAYGLGDPDWRVADCQHVRVTSITALPNGIDIQ 299 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + L G F N + A +A+G+ ++ L++ PGR + + T Sbjct: 300 VRTPLGEARLQPSLVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQ-MITL 358 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 G R VDYAHT ++L+ +L+ +R G+II VFGCGGDRD+GKRP+M A LA Sbjct: 359 PSGARALVDYAHTPDALDQVLRALRDHRDAAGKIICVFGCGGDRDRGKRPLMAATAERLA 418 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 D ++T DNPRSE P+ I A++ G+ + +R AI +A+ D +++AGK Sbjct: 419 DQIVMTADNPRSEAPQAIIADMRGGLASPDTASVELDRRAAIESALMQAKAGDWVLIAGK 478 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET + G++ D ++R+ + Sbjct: 479 GHETTQEIQ-GQRLPFDDAAVVRDWI 503 >gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 519 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 138/508 (27%), Positives = 217/508 (42%), Gaps = 55/508 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + PE + L + +DSR ++ G IF+A G DG + + +A+A+ Sbjct: 15 LLGSVPEALEWLRAHAPHGA------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A +V L + + L A+ +G + ++AVTGT+ Sbjct: 69 GAAACLVEREGVEAFR--FGAEGVAALR--DLKAATGLLAADWFGMPTQRLDVVAVTGTN 124 Query: 125 GKSSVASFVQQICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 GK+S ++ + IG + + LTTP P+ L +A + Sbjct: 125 GKTSTTWWLADALNQLAGSGLAAHGGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAG 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+ ++EASS GL +HRL G++L FTN +DH+DYH AY+ AK LF+ Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295 P A++ DD E+ + + G + + + T++ Sbjct: 245 --PGLQAAVVNIDDPRGGELADTLAQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAE 302 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + G + ++N L A+GI L +L VPGR E + + Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPDQP 362 Query: 356 GRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L+ +R GR+ VFGCGG+RD+ KRP+MG+IA AD Sbjct: 363 L-VAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459 IVT DNPR+E P I EI+ G + Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIAEAD 469 Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485 DV+++AGKGHE + G ++ D Sbjct: 470 GRDVVLIAGKGHEDYQE-SAGVRRPFSD 496 >gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] Length = 515 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 150/501 (29%), Positives = 220/501 (43%), Gaps = 35/501 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 ++ E +N L + + +D+R + AG F A + D FI A+ +G Sbjct: 11 HRQIAEALNWLQAHLQRGA-----HLHADTRSLTAGDAFFAYAVDGADNRAFIDGALERG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSG 125 A A++V A+ L V + AS YG +++L V TGT+G Sbjct: 66 AAAVLVQPEGFSGAIDAS-----TTLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNG 120 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+S + ++ G IG T TTP L ++L+ L G Sbjct: 121 KTSCSQWISAALTALGKRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKA 180 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++E SSH L Q R++G FTNL +DH+DYH T +AY AK RLF E A Sbjct: 181 VAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAW---PELRA 237 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----------IHNKQQVTIS 294 + D + + + R ++ G + A + Sbjct: 238 AVINRDDAAGRRLLASTQGHARTIAYGLDSAQQSAPQADASLLASNVRATPTGTAFHLST 297 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + + G F V N L G +A I L L KL V GR + +G + Sbjct: 298 SDWGNAEVEVQTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRLGGRLQ 357 Query: 355 GGRI--YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 +DYAHT ++LE L+ +R + G +I +FGCGGDRD KRP+MG IA + Sbjct: 358 NDEPLVVIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKM 417 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DNPRSEDP+ I +I G+ +R AI AI ++DV+V+AG Sbjct: 418 ADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAG 477 Query: 467 KGHETVHIVTNGEKKMSVDCD 487 KGHE + G+K+ D D Sbjct: 478 KGHEATQEIM-GKKRAFSDQD 497 >gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] Length = 488 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L+ + KI + SDSR+++ IF I G DGH ++ A+ QGA+ IV S Sbjct: 1 MKRLNELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHS 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 + V+NT L+ ++ Y + + VTG+SGK+ VAS Sbjct: 61 KDLNYYH------DKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASM 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + S + + + ++ TTP +YL + L ++ GV V++EASSH Sbjct: 115 IKDAMAKYCSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSH 174 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL R+DGI TN+G +H+D+H T++ Y AK +LFE + P + Sbjct: 175 GLALGRVDGINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNS---DD 231 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + + G + I K + + + IS +G F P+ F + Sbjct: 232 LNFMTLKNNTQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNI 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L G+ IA+G D +V++ +E + + GR E + T + + +DY ++ E I Sbjct: 292 YNVLALTGVLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAI 350 Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + + GRII V G G R+ R +G++A D I+T + R ED +I Sbjct: 351 FEYVDGVRQGHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICK 410 Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I I + +R AI AIE+ K D++++ GKGHE + G+ D I Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQI 470 Query: 489 IREILGLI 496 ++E L I Sbjct: 471 VKEALERI 478 >gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te ligase mure [Rhodococcus equi 103S] gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 501 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 146/511 (28%), Positives = 228/511 (44%), Gaps = 33/511 (6%) Query: 1 MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50 M L+DL + E++++L + R I V DSR ++ G ++ A+ Sbjct: 1 MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60 Query: 51 GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 G + G F +A A+GA A++ + P +VVD+ R L A+ Y Sbjct: 61 GRRHHGADFASEASARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110 Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSP 167 G ++ VTGT+GK+S ++ +GL + G T A+ TTP Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEA 170 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 L ++ +GV V++E SSHGL +HR+DG + G FTNL RDH+DYH +AY+ Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK RLF L + + I D + S G ++ V A Sbjct: 231 TAKARLFGRDLCERAAVCI---DDDYGRRLAGEVAVPHLTFSARDPGADVYATTVRAQRW 287 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ G+ + G QV NA+ A GID + +E L +PGR E Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + VDY H + + +R++T GRI+VV G G+RD GKR +G A Sbjct: 348 RVDVG-QPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406 Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 A++ +VTD++ S+D +R G + +R EAI A+++ D + Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AG+GH+ +V +G D +R L Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496 >gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] Length = 498 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 131/504 (25%), Positives = 220/504 (43%), Gaps = 28/504 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + D+I ++ P +N +S DSR + G +FVAI G DGH +I Sbjct: 1 MNILDIIDN--IKVKTIYGNLPES-----VNNISQDSRKVGEGDVFVAIKGYTVDGHNYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118 + I QGA ++ S + N ++V+ K S+ A ++ + + Sbjct: 54 EKVIEQGAALVIASR------YENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSY 176 AVTGT+GK+S+++ V + + G SS IG + A+ TTP + L + Sbjct: 108 AVTGTNGKTSISTLVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234 L + +++ EASSH + R+ + + FTNL +H+D+H Q Y + + Sbjct: 168 LRRDNIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290 E+ + D +V+ + S+ + + K Sbjct: 228 LGNNLSEAKYGVLNKDDSYYKVISKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTS 287 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T++ F+ G+F V N L A G ++ L KL + GR E +G Sbjct: 288 FTLNSPEGTFECTTNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYGRMEIIG 347 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I D+AHT + E +L+ R + G R ++V G GG RD K P++G I + Sbjct: 348 -DDLPIDIISDFAHTPDGYEKLLEATREMRKGKRTLLVTGMGGGRDISKGPLIGDIISE- 405 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD ++T D+PR ED E + I G+ + + R +A++ IE+ DV+++A K Sbjct: 406 ADYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVILASK 465 Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491 G E I+ G+K D + E Sbjct: 466 GREDYEILQGGKKVWHSDPIVAVE 489 >gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 488 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L+ + KI + SDSR+++ IF I G DGH ++ A+ QGA+ IV S Sbjct: 1 MKRLNELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHS 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 + V+NT L+ ++ Y + + VTG+SGK+ VAS Sbjct: 61 KNLNYYH------DKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASM 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + S + + + ++ TTP +YL + L ++ GV V++EASSH Sbjct: 115 IKDAMAKYCSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSH 174 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL R+DGI TN+G +H+D+H T++ Y AK +LFE + P + Sbjct: 175 GLALGRVDGINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNS---DD 231 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + + G + I K + + + IS +G F P+ F + Sbjct: 232 LNFMTLKNNTQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNI 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L G+ IA+G D +V++ +E + + GR E + T + + +DY ++ E I Sbjct: 292 YNVLALTGVLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAI 350 Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + + GRII V G G R+ R +G++A D I+T + R ED +I Sbjct: 351 FEYVDGVRQGHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICK 410 Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I I + +R AI AIE+ K D++++ GKGHE + G+ D I Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQI 470 Query: 489 IREILGLI 496 ++E L I Sbjct: 471 VKEALERI 478 >gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] Length = 519 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 141/508 (27%), Positives = 217/508 (42%), Gaps = 55/508 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + PE + L Q + +DSR ++ G IF+A G DG + + +A+A+ Sbjct: 15 LLGSVPEALEWLRAHAPQGA------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A +V L + + L A+ +G + ++AVTGT+ Sbjct: 69 GAAACLVEREGVEAFR--FGAEGVAALR--DLKAATGLLAADWFGMPTQRLDVVAVTGTN 124 Query: 125 GKSSVASFVQQICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 GK+S ++ + IG + Q LTTP P+ L +A + Sbjct: 125 GKTSTTWWIADALNLLAGSGLATHGGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAG 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+ ++EASS GL +HRL G++L FTN +DH+DYH AY+ AK LF+ Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295 P A++ DD E+ + + G + V + T++ Sbjct: 245 --PGLQAAVVNIDDPRGGELSDTLAQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAE 302 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + G + ++N L A+GI L +L VPGR E + + Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQP 362 Query: 356 GRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L+ +R GR+ VFGCGG+RD+ KRP+MG+IA AD Sbjct: 363 L-VAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459 IVT DNPR+E P I EI+ G + Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIADAD 469 Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485 DV+++AGKGHE G ++ D Sbjct: 470 GRDVVLIAGKGHEDYQETA-GVRRPFSD 496 >gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8102] gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH 8102] Length = 500 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 154/504 (30%), Positives = 241/504 (47%), Gaps = 23/504 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ EL P + ++ ++SDSR + G +F+ + G + DG F Q Sbjct: 5 LHALLRDVGLEL-------PAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQ 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENI--LA 119 A+ GA A V+ + + + A ++ P+LV+ + + + A+ +G + + Sbjct: 58 ALEAGAAAAVIGPSAAQELPPA---ADQPVLVLREPVARSIGELAASYWGHPCRRMALIG 114 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ ++ + R G + G + ++ TT L L+ + Sbjct: 115 VTGTNGKTTTTHLIEHLAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAA 174 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S G ++E SSH L Q R+ G + FTNL +DH+DYH T ++Y+ AK RLF L Sbjct: 175 SAGSQLAAMEVSSHALVQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPL 234 Query: 239 -PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + P+ + D + C S+G + + + + + Sbjct: 235 LDGDGPSAVVNGDDPWGSRLAEQLGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPA 294 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355 F PL G F + N L A G+ + G+ A +LE + VPGR E V N Sbjct: 295 GSGAFCSPLLGRFNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESA 354 Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT + LE L R T GR++ VFGCGGDRD+GKRP M IA LAD Sbjct: 355 ALPTVLVDYAHTPDGLENALAASRPFTDGRLVCVFGCGGDRDRGKRPQMAAIAARLADRV 414 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DNPR+EDP++I A+++ G+P + +R AI AI + D++++AGKGHE Sbjct: 415 VVTSDNPRTEDPDQIIADVVAGMPSGTDLSVERDRATAIAEAIADASAADLVLIAGKGHE 474 Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494 I+ EK D + + L Sbjct: 475 DYQILGT-EKVHFDDREEAEQALR 497 >gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] Length = 506 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 133/512 (25%), Positives = 223/512 (43%), Gaps = 28/512 (5%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M + + ++ +L E +I ++ DSR + + ++F A+ G DG F Sbjct: 1 MNMNKKMLNNVLSKLDKNFVKEIKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE-- 115 I AI QG+ IV ++ + D N + +D N +KF+S FA Y + + Sbjct: 61 INSAIEQGSNVIVHTNDINFYD------PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNL 114 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLA 171 I+ VTGT GKSSV ++ + + G+ I + + R +TP + Sbjct: 115 KIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIH 174 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 LS + V + VE++SHGLD RL I TN+ +H+++H T Q Y NA Sbjct: 175 LVLSKMVENNVEYAIVESTSHGLDIRTSRLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNA 234 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K+ LF II DD + S+ + + K+ Sbjct: 235 KLNLFSSADANGGFGIINMDDKNFSTFLN--TINRAYTYSLENKNADFFVSKINEQMGFT 292 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEF 348 + + +D L G F V N + A + + +D + +++ L + + GR + Sbjct: 293 EFEFYHKNVKYDARVNLTGSFNVENVMAALIVVSQVMNVDVSELIDKLVNIEGLFGRMQG 352 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + +DYAHT + I + ++ R+I VFG G+RD KR + G+IA Sbjct: 353 VDFGQ-DFSLIIDYAHTPGAFLKIFPIFKRLSKNRLISVFGSAGERDVLKRKLQGEIADR 411 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462 +DI I+ D++PR ED +I +I GI +R AI AI + + D++ Sbjct: 412 YSDIIILCDEDPRGEDSMQIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLV 471 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 V GKGHE I + + ++++I+ Sbjct: 472 VTLGKGHENSIIYKD-RSIFWDEQAVVKDIIS 502 >gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis thaliana] gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana] Length = 772 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 130/520 (25%), Positives = 236/520 (45%), Gaps = 43/520 (8%) Query: 7 IYKDFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 EL+++ + P+ + +I + DSR + AG +FV +G+ F+ +A Sbjct: 239 FKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEA 294 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 +GA A+V S ++D +++V++T L+ AS Y +N+ + VT Sbjct: 295 DKRGAVAVVASKEIDIEDTLGCRA----LVIVEDTNAVLAALASSFYRHPSKNMSVIGVT 350 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYL 177 GT GK++ ++ + + G+ + S N P + + ++ + Sbjct: 351 GTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKM 410 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF + Sbjct: 411 LHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRM 470 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + E + D + + N ++ +H K + QV ++ Sbjct: 471 VDPERHRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNT 530 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G +YN L A + IA+G ++ +E++ VPGR E + + Sbjct: 531 PQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQA 589 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VD+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ ++ Sbjct: 590 FGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTML 649 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAI 453 T DNPR+EDP I +++ GI ++ + + R A+R A+ Sbjct: 650 TSDNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAV 709 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 M + D++VVAGKGHE + +K+ D + RE L Sbjct: 710 AMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748 >gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum ATCC 13032] gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum ATCC 13032] gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum R] gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium glutamicum ATCC 13032] gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R] Length = 521 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 146/505 (28%), Positives = 210/505 (41%), Gaps = 20/505 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 L LI + + E+ I + DS + + IF A+ G + G F Sbjct: 8 LTKLIDGILKGSAQGVPAHAVG--EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAG 65 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 A A AI+ +A + P++VVD+ R L +S +YG ++ + Sbjct: 66 TDNAAKAVAILTDAAG--LEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 123 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGTSGK++ + +++ +G IG T T +LTTP L + + Sbjct: 124 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GVTHV +E SSH L R+ G +FTNL +DH+D+H T YF+AK F Sbjct: 184 DHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADS 243 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + + D + M V ++G + F + Q I+ Sbjct: 244 PLVADKQVVCVDDSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSN 303 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + A A VPGR E + + Sbjct: 304 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKVAVPGRMERI-DEGQDFLA 362 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++ +L +RT GR+ VV G GGDRD KR MG+++ AD+ IVTDD Sbjct: 363 VVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDD 422 Query: 419 NPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 NPRSE P IRA + G +E G+R EAIR +E D +VVAGKG Sbjct: 423 NPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 482 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HE +V G D + +R L Sbjct: 483 HEVGQLVA-GVTHHFDDREEVRAAL 506 >gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] Length = 767 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 130/520 (25%), Positives = 236/520 (45%), Gaps = 43/520 (8%) Query: 7 IYKDFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 EL+++ + P+ + +I + DSR + AG +FV +G+ F+ +A Sbjct: 239 FKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEA 294 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 +GA A+V S ++D +++V++T L+ AS Y +N+ + VT Sbjct: 295 DKRGAVAVVASKEIDIEDTLGCRA----LVIVEDTNAVLAALASSFYRHPSKNMSVIGVT 350 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYL 177 GT GK++ ++ + + G+ + S N P + + ++ + Sbjct: 351 GTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKM 410 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF + Sbjct: 411 LHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRM 470 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + E + D + + N ++ +H K + QV ++ Sbjct: 471 VDPERHRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNT 530 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G +YN L A + IA+G ++ +E++ VPGR E + + Sbjct: 531 PQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQA 589 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VD+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ ++ Sbjct: 590 FGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTML 649 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAI 453 T DNPR+EDP I +++ GI ++ + + R A+R A+ Sbjct: 650 TSDNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAV 709 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 M + D++VVAGKGHE + +K+ D + RE L Sbjct: 710 AMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748 >gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum ATCC 13032] Length = 517 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 146/505 (28%), Positives = 210/505 (41%), Gaps = 20/505 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 L LI + + E+ I + DS + + IF A+ G + G F Sbjct: 4 LTKLIDGILKGSAQGVPAHAVG--EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAG 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 A A AI+ +A + P++VVD+ R L +S +YG ++ + Sbjct: 62 TDNAAKAVAILTDAAG--LEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 119 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 VTGTSGK++ + +++ +G IG T T +LTTP L + + Sbjct: 120 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 179 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GVTHV +E SSH L R+ G +FTNL +DH+D+H T YF+AK F Sbjct: 180 DHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADS 239 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + + D + M V ++G + F + Q I+ Sbjct: 240 PLVADKQVVCVDDSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSN 299 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + A A VPGR E + + Sbjct: 300 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKVAVPGRMERI-DEGQDFLA 358 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++ +L +RT GR+ VV G GGDRD KR MG+++ AD+ IVTDD Sbjct: 359 VVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDD 418 Query: 419 NPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 NPRSE P IRA + G +E G+R EAIR +E D +VVAGKG Sbjct: 419 NPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 478 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HE +V G D + +R L Sbjct: 479 HEVGQLVA-GVTHHFDDREEVRAAL 502 >gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. MCS] gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. KMS] gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. MCS] gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. KMS] Length = 508 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 158/509 (31%), Positives = 229/509 (44%), Gaps = 21/509 (4%) Query: 1 MKLQDL-----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 MKL+ E + + + ++ V+ + G +F A+ G+ Sbjct: 3 MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G F+ A+A GA A++ +A ++ + + P+LV + R L AS +YG + Sbjct: 63 GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172 ++ VTGTSGK++ V+ + +G + IG Q + LTTP L Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + QGV V +E SSH L R+DG+ AG FTNL RDH+D+H T + YF+AK Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF+ + + D + M V + G + Q+ Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAVTVSASGRPADWRAEDVRAVEAGAQEFV 299 Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 LPG + V N ++AA L A+ + L V PGR E V Sbjct: 300 AVDPAGVHHGLRIALPGHYNVANCVLAAALLDAVDVSPEQAAPGLRTATV-PGRLEAVDR 358 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 VDYAH +L +L+ +R GRI VVFG GG+RD GKR MG++A +LAD Sbjct: 359 GQ-DFLALVDYAHKPGALRAVLETLRGQGKGRIAVVFGAGGNRDAGKREPMGRVAAELAD 417 Query: 412 IAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + +VTDDNPR EDP IR A G +E G+R EAI A+ DV++VA Sbjct: 418 LVVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEIGDRREAIAHAVRWARPGDVVLVA 477 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKGHET G D + E+L Sbjct: 478 GKGHETGQT-AAGRTHPFDDRVELAELLE 505 >gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] Length = 518 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 147/480 (30%), Positives = 215/480 (44%), Gaps = 33/480 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R + AG +F A + D H FI AI +GA A++V + Sbjct: 30 HLHADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQPEGFSGAIDPSNT---- 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS Y +++L +TGT+GK+S + ++ G IG Sbjct: 86 -LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYHQT +AY AK RLF E A + D + + + R + Sbjct: 205 FTNLTQDHLDYHQTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTQGHARTI 261 Query: 269 SVGYQGKFIHLKK-------------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + G + L+ + E D + G F V N Sbjct: 262 AYGLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNL 321 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL 373 L G +A + L L KL V GR + +G + +DYAHT ++LE L Sbjct: 322 LGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 381 Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + +R + G +I +FGCGGDRD KRP+MG IA +AD ++T DNPRSEDP+ I Sbjct: 382 EALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVLTSDNPRSEDPQSIIE 441 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I G+ +R AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 442 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500 >gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] Length = 524 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 239/499 (47%), Gaps = 20/499 (4%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + +L P ++ + ++H+ G +F A+ G + G F A+A Sbjct: 28 LTTLVARADARLVADPAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTADAVAG 87 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ + + A S P+L+ + R L A+ +YG+ +L +TGTS Sbjct: 88 GAVAVLTDEEGASR--PAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGITGTS 145 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + FV+ + +G + IG T S + TTP L + + +GVT Sbjct: 146 GKTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVT 205 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV++E SSH L R++G + G+FTNL +DH+D+H+ + YF+AK LF+ E Sbjct: 206 HVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDGRSTHEIV 265 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ + + G + + + +G+ + Sbjct: 266 VV----DSAWGQALVTPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPDGRKAQAV 321 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PLPGEF V NA++AA + +G+D VLE L + V PGR E V + VDYA Sbjct: 322 LPLPGEFNVANAVLAAAILDTVGVDLDAVLEGLATVEV-PGRMERV-YLGQPFTAVVDYA 379 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H ++ L+ +R T GR+I V G GGDRD KRP+MG+ A +D+ IVTDDNPRSE Sbjct: 380 HKPAAVTQALRALRARTEGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTDDNPRSE 439 Query: 424 DPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DP IR I+ G +E G+R EAI A+E DV+ VAGKGHE+ V Sbjct: 440 DPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGHESGQEV 499 Query: 476 TNGEKKMSVDCDIIREILG 494 G D D + + Sbjct: 500 A-GVVHPFSDRDELEAAIR 517 >gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 528 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 148/479 (30%), Positives = 227/479 (47%), Gaps = 21/479 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS DS G +FV + G G F +A+ GA A++ + +L + Sbjct: 47 ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHE--VAPG 104 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 TP+LV D+ R + ++ +Y ++ AVTGT+GK++ + F+ I Sbjct: 105 TPVLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVA 164 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + ++ TT L + ++ V S+EASSH + HRLDG+ + Sbjct: 165 GTVELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDV 224 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+D+H+T + Y AK RLF + DD + + +A R Sbjct: 225 AGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGVI--CVDDQWGAALAAQAPIEVDR 282 Query: 267 VLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322 V + ++ V + T+ + + PLPG V NA +A + Sbjct: 283 VRAYPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMA 342 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITS 381 I G+ +A L H +PGR + + VD+AHT ++++ LK +R IT Sbjct: 343 IRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKAVRPITP 402 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 GR+IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP IR I+ GI Sbjct: 403 GRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDGIRTVRP 462 Query: 437 --PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 E R +A+R +E+ D ++V GKGHE + GE D ++ E Sbjct: 463 GLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMAEA 520 >gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] Length = 501 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 147/476 (30%), Positives = 228/476 (47%), Gaps = 22/476 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +DSR ++AG FVA G DG ++ +A+ QGA A++V + A S Sbjct: 25 DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVEADG----LQAFDLSGDS 80 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SF 145 I + + L A + + ++LAVTGT+GK++ A ++ + L+ Sbjct: 81 IAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCA 140 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + + +TTP P+ L +A + QG+ ++EASS G+ +HRLDG K+ Sbjct: 141 LVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKI 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ + R Sbjct: 201 RVALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPAAVVNIDDAHGARLWARLQGRA 258 Query: 265 CRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V SV QG K + T+ G L G++ V N L Sbjct: 259 MDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLATLR 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---IT 380 +G+ ++ L VPGR + + + VDYAHT ++LE L+ ++ Sbjct: 319 CLGLTLEQAVQACADLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQR 377 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE PE I +I+ G+ Sbjct: 378 QGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVPESIIDQILAGMQAGQ 437 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI + +DV+++AGKGHE G + D ++ L Sbjct: 438 ALHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAQKAL 492 >gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 539 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 214/479 (44%), Gaps = 20/479 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ S + GWIFVAI G + G F AI GA I+ + F R Sbjct: 58 VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFE--RRLG 115 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ V N R + L +Y +AVTGT+GK++ + ++ + Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + + + TT +A+ L+ +E S+H L +R+DGI Sbjct: 176 GTVETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNRVDGIVFDV 235 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL DH+DY+ + YF AK LF + DD + + + A Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFTPEHSRRGVV--CVDDEWGRRLADHATVPVTT 293 Query: 267 VLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V ++ ++ ++ V +I +S +G P+ G+ V N VA + Sbjct: 294 VSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQNTAVAIVSAV 353 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 ++G+ + +E +PGR E T + VDYAHT +LE L++ R +T+G Sbjct: 354 SLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWTLRSTRELTAG 413 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----- 437 R+++VFG GDRD KR + IA AD+ VTD+NPRSEDP+ IR ++ GI Sbjct: 414 RVVIVFGTDGDRDASKREELAAIAAREADVLWVTDENPRSEDPQSIRDYLLRGIASARPD 473 Query: 438 --GFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E R +A+R AI D +++ GKG E + G D + E+L Sbjct: 474 MHDVHEVTTCRRDAVRQAILDARAADTVIITGKGAEWYQEIQ-GIHHRYNDVPVAAEVL 531 >gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 160/490 (32%), Positives = 250/490 (51%), Gaps = 24/490 (4%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + ++ I ++ ++ + IF A+ G G+ FI A+A GA I+ A Sbjct: 2 ESNNIIEIIKKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQA 61 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 I S + ++VV N + + LY K P+ ++AVTGT GK+SV ++ QQ+ Sbjct: 62 --------PITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQL 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHV 185 C +G + IG I++ N+L TT S I L L++ G+ V Sbjct: 114 CMLAGEQAASIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFV 173 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++EASSHGLDQ+RL IK A +FT+ RDH+DYH+T Y +AK++LF+E + AI Sbjct: 174 ALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAI 233 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + + + L Q I + V + N Q+V + D+ F P Sbjct: 234 VNNNINELSIIQSKITDEFGLKLLSVEQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVP 293 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G + N L+A L I IG+DSA ++ L L + GR E + +VDYA T Sbjct: 294 VIGRVHITNILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKIQFG--NCYAFVDYALT 351 Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSE 423 N+L +L +R + + GR+I +FG +RD +R MG +A L+D+ IVTD + +E Sbjct: 352 PNALATMLTELRALNNKGRLITIFGGSENRDAIARRVQMGIVASKLSDLVIVTDQDSGNE 411 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 DP IR EI+ IE NR EAI+ AI ++ D+L++AGKGHET ++ G Sbjct: 412 DPAAIRKEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVLK-GRIINY 470 Query: 484 VDCDIIREIL 493 D + ++ L Sbjct: 471 NDMEQVKLYL 480 >gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] Length = 476 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 34/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++ ++ K+ + + +++I VSS+S+ I+ +IFVAI G + DGH +I Sbjct: 1 MKIEKIL-KEISYISKNIQN------DKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+ GA IV + ++ + V++ R L+ ++ L + ++ Sbjct: 54 ENALENGASTIV------YTNDDVEFKNEINYIKVEDARLALAKISNFLSDFPSKSLRMI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A+ V + + G + IG + TTP + L+ Sbjct: 108 GVTGTNGKTTTANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEA 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+ +V +E SSHGL R GI G FTNL +H+DYH+T YF AK + Sbjct: 168 KKDGIKNVVMETSSHGLCLKRNYGIAYEYGVFTNLSPEHMDYHKTMDNYFKAK-----MI 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L S + D + K + K + + Sbjct: 223 LLNHSKKQVVNLDDDYGKKAKEIFKDALTISINEDSNYKAENIKRVDMG------LEFFV 276 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F G + +YN+L A + +G + + LE V RFEF+ N G Sbjct: 277 NGVKFHLKRFGMYDIYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFI-ENDLGIN 335 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VD+AHT+ S E + K++ + V+G GDR R +G+I+ +++T Sbjct: 336 IVVDFAHTTTSFESLYKDLPK--DRKKFAVYGISGDRTPDIRRGLGRISAKYDIFSVITT 393 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P+ + E I +I G+ I NR EAI+ AI K D + + GKG E Sbjct: 394 DDPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFVFMLGKGEEDFL 453 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + K + + IRE+L Sbjct: 454 KLKANIKTYYNEKETIREVLE 474 >gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1003] gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1003] Length = 519 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 212/481 (44%), Gaps = 34/481 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R + AG F A D FI A+ +GA A++V A+ Sbjct: 30 HLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQPEGFSGALDASSM---- 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS YG +++L V TGT+GK+S + ++ G IG Sbjct: 86 -LAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH+T +AY AK RLF E A + D + + R + Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKARLFAW---PELRAAVINRDDAVGRRLLASTRGHARTI 261 Query: 269 SVGYQGKFIHLKKVCAIHNKQ--------------QVTISVEGKDFDFLFPLPGEFQVYN 314 + G + + + + + D G F V N Sbjct: 262 AYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDWGEADVEVQTLGAFNVSN 321 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372 L G +A + L L KL V GR + +G + +DYAHT ++LE Sbjct: 322 LLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381 Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L+ +R + G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I Sbjct: 382 LEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441 Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I G+ +R AI AI ++DV+V+AGKGHE + G+K+ D Sbjct: 442 GQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500 Query: 487 D 487 D Sbjct: 501 D 501 >gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 511 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 162/499 (32%), Positives = 242/499 (48%), Gaps = 24/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L + +++ DS + G +F A+ G + G F A A A Sbjct: 5 LDTLAQLSGGRVIGDATVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKAGA 61 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ +A D + PILVV++ R L ++ +YG ++ VTGTSGK++ Sbjct: 62 VLTDAAG--LDLLTEAQETRPILVVEDIRAVLGPISAEIYGHPTRELTVIGVTGTSGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ +G S IG T T + LTTP L + + + ++GVTHV + Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVM 179 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L+ R+ G + G FTNL +DH+D+H T + YF AK +LF E A++ Sbjct: 180 EVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAE-RAVLC 238 Query: 248 ADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + K A + V + G + Q+V + +G +F F Sbjct: 239 IDDEWGERMRGVAKSAGHEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRL 298 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPGEF + NA +A G+ A+G D A L +EK+ V PGR E + VDYAH Sbjct: 299 PLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAV-PGRMERIDRGQ-DFVAVVDYAH 356 Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 ++ +L +R T+GR+ +V G GGDRD KRPIMG A AD+ +VTDDNPR Sbjct: 357 KPAAIAAVLDTLRGQLEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPR 416 Query: 422 SEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 SEDP IRA ++ G E G+R AI ++ D ++V GKGHE +V Sbjct: 417 SEDPATIRAAVVEGARDAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV 476 Query: 476 TNGEKKMSVDCDIIREILG 494 NG+ D + + +G Sbjct: 477 -NGKTLHFDDREEMARAIG 494 >gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 507 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 208/502 (41%), Gaps = 23/502 (4%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + E +L + +++ ++ + + +F A+ G + G F A + Sbjct: 5 IERIATECAGEL-HLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 A AIV + T P++V D+ R L ++ + G + + +TGTS Sbjct: 61 QAAAIVTDKPGY--EILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTS 118 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ +G + IG T T + LTTP L + + GVT Sbjct: 119 GKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVT 178 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV +E SSH + R+ G+ FTNL +DH+D+H T + YF+ K +LF P + Sbjct: 179 HVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I D + R +S + + + Sbjct: 239 KSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRV 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 A A VPGR E + N +G VDYA Sbjct: 299 TLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGRMEKI-DNDKGVLAVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +LE +K +R GR+I VFG GGDRD GKRPIMG A+ AD+ I+TDDNPRSE Sbjct: 358 HKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPGFIE------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DP IR I G F+ G+R +AI A+ D ++VAGKGHE Sbjct: 418 DPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQ 477 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 +V GE + D +R L Sbjct: 478 GQLVG-GEMRDFDDRIELRRAL 498 >gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] Length = 487 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 215/472 (45%), Gaps = 14/472 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ DSR ++ G FVA+ G++ DG FI AIA GA A A + D R Sbjct: 18 VEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGAVA---VLADADADGRQADR 74 Query: 88 SNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++ V N + LS A ++ VTGT+GK++V Q+ G + Sbjct: 75 NGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVTQLCAQLLTALGHQAGV 134 Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + TT I +A+ L + G V++E SSHGL Q R+ + + Sbjct: 135 MGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVALEISSHGLSQSRVAALPVQ 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 G +TNL RDH+DYH AY A + LP + DD + + Sbjct: 195 VGVYTNLSRDHLDYHGDMAAY--ADAKRQLFALPGLRHGVFNLDDETGSRWHRELSGSLL 252 Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + G ++ ++ V + + PL G F + N L A G Sbjct: 253 ALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTLNSPLLGAFNLANLLAALGA 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++G + +L + +LH GR E GT+S + VDYAHT ++L L +R Sbjct: 313 LLSLGYSLSDLLSVVPQLHSAAGRMECFGTDSTPT-LVVDYAHTPDALSQALAALRPHCR 371 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440 G + VFGCGG+RD GKRP+M + A AD I+T DNPRSE I A++ G+ G Sbjct: 372 GALWCVFGCGGERDSGKRPLMAQAAEQGADHLIITADNPRSEAFADIAAQMEAGLTGQAE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R A+R A D++++AGKGHE I+ + + +++ Sbjct: 432 VIEDRAAAVRRAFAQAQPGDMVLLAGKGHEDYQIIGGNRLDY-NERALAQQL 482 >gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] Length = 934 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 21/477 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + D+R + AG +F A VG DG +I QA+ GA AIV+ + A + P+ Sbjct: 23 LCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQADDRASATPAI---DVPV 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + L Y + E++ +AVTGT+GK+S ++ G IG Sbjct: 80 LAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAALNAEGTPCGTIGTL 139 Query: 151 STISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + LTTP + + ++L+ + + G V++EASS GLDQ RLD ++++ + Sbjct: 140 GVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGAQVVALEASSIGLDQGRLDQVRIVIAA 199 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRV 267 FTNL DH+DYH T Y AK LF + A++ DD K+++ + Sbjct: 200 FTNLTHDHLDYHGTLDNYQRAKFSLFAWPGLRG--AVVNVDDPAGKQLVSTLPPASTLAY 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ I + + A + L L GE V N L+ G+ +G Sbjct: 258 SISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQLLTRLVGEHNVANLLLVTGVLQQLGW 317 Query: 328 DSALVLEHLEKLHVVPGRFEFV------GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 D + + L L V GR + V G + VDYAHT ++L+ L +R + Sbjct: 318 DLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVDYAHTPDALKRALLALRDVAR 377 Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G++I VFGCGG RD+ KRP+MG+IA++LAD ++T+DNPR E+P I A+I G+ Sbjct: 378 VRGGKLICVFGCGGSRDRSKRPMMGRIAVELADEVVLTNDNPRLEEPLDIIAQIKSGMST 437 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI ++I + DV+++AGKGHET G++ D + R L Sbjct: 438 AARVELDRALAILSSIWAADAHDVVLLAGKGHETYQEFQ-GQRVPFDDREWARFALS 493 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 130/376 (34%), Gaps = 21/376 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R I G +FVA+ G DGH ++ A+ GA A VV + P Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTAVA--------LP 550 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V+ +TR+ L ++ +H ++AVTG++GK++ + I ++S + Sbjct: 551 QFVLGDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRG 610 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +++ + L + + + E S + N Sbjct: 611 NLNNDIGVPLT----VLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVAL------VNN 660 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 R+H ++ T +A + + L D ++ + Sbjct: 661 AQREHQEFMLTVEAVARENGTVIDMLPVDGIAVFP--GDDAYSDLWAELAGTRTVLRFGF 718 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++ ++ A I PG + NAL AA A G+ Sbjct: 719 SPDFDVYADQIHAEPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLES 778 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +++ LE + V GR + I Y +S+ + + + G+ ++V G Sbjct: 779 IVQGLEAFNPVSGRMQPHALAGGYQLIDDTYNANPDSVRAAIDVLAEL-DGKRVLVLGDM 837 Query: 392 GDRDQGKRPIMGKIAL 407 G+ + ++ Sbjct: 838 GEVGANGDAMHAEVGA 853 >gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium extorquens PA1] gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium extorquens PA1] Length = 492 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 202/474 (42%), Positives = 270/474 (56%), Gaps = 19/474 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A ++ T Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI R G Sbjct: 76 DDLPEATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRE 135 Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G +++ + LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+ Sbjct: 136 SASLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L A +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADA 255 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319 AG + + G G FI L + Q +T++ GKD+ P A A Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLA 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A D A V LE L VPGR E +G + G VDYAH +LE +L +R Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 SGR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R EAIR + L DVLVVAGKGHET IV D D +R + Sbjct: 435 EEIGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487 >gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 476 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 129/501 (25%), Positives = 214/501 (42%), Gaps = 34/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++ ++ K+ + + +++I +SSDSR I+ +IF+A G + DGH +I Sbjct: 1 MKIEKIL-KEISYISKNIQN------DKEIIGISSDSRQIKENYIFLANKGYEFDGHKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 AI GA I+ + S + V + R L+ ++ L + ++ Sbjct: 54 DSAIKNGANTII------YTNDDINFESGINYIKVKDQRLALAKISNLLSNYPSKSMRMI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ A+ + + + G IG + TTP L + L Sbjct: 108 GVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKA 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + +E SSHGL R GI G FTNL +H+D+H+T YF AK + Sbjct: 168 KKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAK-----MI 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L S + D + K + K + + + T++ Sbjct: 223 LLNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSK--YRAKNIKRVDLGLEFTVNG-- 278 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F G++ +YN+L A + +G + + LE V RFEF+ N G Sbjct: 279 --VKFHLNRFGQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFI-ENKLGIN 335 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VD+AHT + E + K++ +I V+G GDR R +GKI+ +++T Sbjct: 336 IVVDFAHTPEAFENLFKDLPK--DKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVITT 393 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P+ + E I +I G+ I +R EAI+ I K D + + GKG E Sbjct: 394 DDPKFDTFENISQQIKEGVDENKGECIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEKFL 453 Query: 474 IVTNGEKKMSVDCDIIREILG 494 K + + IRE+L Sbjct: 454 KFNGNIKTYYSERETIREVLE 474 >gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] Length = 518 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 146/483 (30%), Positives = 214/483 (44%), Gaps = 39/483 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +D+R + AG F A DG FI AI +GA A++V + + Sbjct: 30 HLHADTRSLAAGDAFFAY---AVDGADNRPFIEGAIERGAAAVLVQPEGFSGAINPSNM- 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V + AS Y +++L +TGT+GK+S + ++ G Sbjct: 86 ----LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAI 141 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 142 IGTLGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFD 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYHQT +AY AK RLF E A + D + + + Sbjct: 202 IAVFTNLTQDHLDYHQTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTQGHA 258 Query: 266 RVLSVGYQGKFIHLKKVCAIHN-------------KQQVTISVEGKDFDFLFPLPGEFQV 312 R ++ G L+ + + D + G F V Sbjct: 259 RTIAYGLDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNV 318 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLE 370 N L G +A + L L +L V GR + +G + +DYAHT ++LE Sbjct: 319 SNLLGVLGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALE 378 Query: 371 MILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +R + + R +I +FGCGGDRD KRP+MG IA +AD +VT DNPRSEDP+ Sbjct: 379 KTLEALRPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQS 438 Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I G+ +R AI AI ++DV+V+AGKGHE + G+K+ Sbjct: 439 IIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFS 497 Query: 485 DCD 487 D D Sbjct: 498 DQD 500 >gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 499 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 140/480 (29%), Positives = 221/480 (46%), Gaps = 22/480 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR + F+A G D F+ A+A+GA A + + + R+ Sbjct: 19 VQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQSGAEAFELDPDRTG 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG----LS 143 + A+ YG + +++VTGT+GK+S A ++ Q + G + Sbjct: 79 ----FYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALGQVGGKEAMP 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + TTP P+ L K L + QG+ ++EASS G+++ R+ G Sbjct: 135 CGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIGIEELRMAGT 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTN +DH+DYH + AY+ +K LF A++ DD E+ + Sbjct: 195 VIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSW--DGLKAAVVNVDDDKGAELAAELAS 252 Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V +VG + + + V + + + G + V N L Sbjct: 253 TSLDVWTVGVQRDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSYNVSNLLGVIAA 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +GI ++ L VPGR E VG +S + VDYAHT ++L L+ ++ + Sbjct: 313 MRTVGIPLQSAVQSCATLLPVPGRMECVGGDSAPL-VAVDYAHTPDALAQALRALQPVAQ 371 Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435 G++ VFGCGGDRD KRP+MG +A ++ A+VT DNPRSE PE I A+I+ G Sbjct: 372 ARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHAVVTSDNPRSEKPEAIVAQILLGMVE 431 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 P + +R AI AI + +DV+++AGKGHE + G K D R L L Sbjct: 432 CPHVDVQVDRAVAIADAIRSADARDVILLAGKGHEETQEIA-GVKNPFSDMTHARSALAL 490 >gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae FF5] Length = 435 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 142/437 (32%), Positives = 206/437 (47%), Gaps = 14/437 (3%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 +GA A+ AY ++ ++ P++ V LS A R YG N++ VTG Sbjct: 1 KRGAAAV----AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTG 56 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+SV V Q G +G T Q R TTP PI + L+ L G Sbjct: 57 TNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG 116 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V++E SSHGLDQ R + TNL RDH+DYH T +AY AK +LF K Sbjct: 117 ARAVAMEVSSHGLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPDLKC 176 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + DD + +E+ + S +++ + + + T+ + Sbjct: 177 RVINL--DDDFGRELAAVKQESRLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF 234 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G F + N L A G + + +L+ L KL GR + +G + + VD Sbjct: 235 LRSSLLGRFNLSNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVD 293 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPR Sbjct: 294 YAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPR 353 Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 SE P I +I G R +AI I N DV+V+AGKGHE + NG Sbjct: 354 SESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NG 412 Query: 479 EKKMSVDCDIIREILGL 495 +++ D L + Sbjct: 413 QRQPFSDLQEAASALAV 429 >gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] Length = 536 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 152/494 (30%), Positives = 230/494 (46%), Gaps = 27/494 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL + P+ + + + S +Q G +F A+ G G F A+A+GA A+ Sbjct: 37 ELTGAHAAAPVP-ADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVF 95 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + + P+LV + R+ L ++ +YG+ + + + +TGTSGK++ + Sbjct: 96 TDAEGAR----VLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTS 151 Query: 131 SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V+ +GLS+ IG T + LTTP L + + QGV V +E Sbjct: 152 YLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEV 211 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH L R+DG++ G+FTNL +DH+D+H + YF AK RLFE P + + Sbjct: 212 SSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCV 271 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + A V + G + V + +Q+ T + + LPG Sbjct: 272 DDAWGRRLAEGLAAPITVSTTGE-ADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPGR 330 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + V NAL+A +C A D A+ L + V PGR + V + VDYAH +L Sbjct: 331 YNVANALLAVAVCAAARADPAVAAPALATVDV-PGRMQRV-ERGQDFLAVVDYAHKPAAL 388 Query: 370 EMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 E ++ +R GR+ VV G GGDRD GKR +MG AD+ ++TDDNPR+ Sbjct: 389 ESVIATLREHLAAADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRT 448 Query: 423 EDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 EDP IRA + G E G+R AI A+ + D ++VAGKGHET Sbjct: 449 EDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHETGQE 508 Query: 475 VTNGEKKMSVDCDI 488 + G K D ++ Sbjct: 509 IA-GVKHPFDDREV 521 >gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1001] gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1001] Length = 519 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 146/481 (30%), Positives = 212/481 (44%), Gaps = 34/481 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R + AG F A D FI A+ +GA A++V A+ Sbjct: 30 HLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQPEGFGGAIDAS-----T 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V + AS YG +++L V TGT+GK+S + ++ G IG Sbjct: 85 MLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH T +AY AK RLF E A + D + + + R + Sbjct: 205 FTNLTQDHLDYHHTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTRGHARTI 261 Query: 269 SVGYQGKFIHLKKVCAIHN--------------KQQVTISVEGKDFDFLFPLPGEFQVYN 314 + G + + + D D G F V N Sbjct: 262 AYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDWGDADVEVQTLGAFNVSN 321 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372 L G +A + L L +L V GR + +G + +DYAHT ++LE Sbjct: 322 LLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381 Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L+ +R + G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I Sbjct: 382 LEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441 Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I G+ +R AI AI ++DV+V+AGKGHE + G+K+ D Sbjct: 442 EQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500 Query: 487 D 487 D Sbjct: 501 D 501 >gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] Length = 501 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 142/481 (29%), Positives = 221/481 (45%), Gaps = 26/481 (5%) Query: 23 MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + W +++ + +DSR IQ G F+A G DG + A+A+GA A +V Sbjct: 14 VDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVECEG---- 69 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 + I + + + AS +G + +LAVTGT+GK+S A ++ + Sbjct: 70 VEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALNQ 129 Query: 140 SGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +G + Q +TTP P+ L +A + + G ++EASS Sbjct: 130 LSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEASS 189 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 GL +HRLDG ++ FTN +DH+DYH AY+ AK LF+ P A++ DD Sbjct: 190 IGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW--PGLRAAVVNVDDP 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + + S+ QG K + +T++ + G + Sbjct: 248 QGAALHAELQGSDLDLWSISLQGPARLQAKHIVHTGAGLALTVAEGAHTEVLQTQVIGLY 307 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L A+G+ A L+ +L VPGR E + + + VDYAHT ++L Sbjct: 308 NVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQPL-VAVDYAHTPDALH 366 Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L ++ + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNPR E+P+ Sbjct: 367 QALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQS 426 Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G + +R AI A+ DV+++AGKGHE G++ Sbjct: 427 IIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVVLIAGKGHEDYQE-AAGQRVPFS 485 Query: 485 D 485 D Sbjct: 486 D 486 >gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Acidovorax ebreus TPSY] gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY] Length = 501 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 142/481 (29%), Positives = 218/481 (45%), Gaps = 26/481 (5%) Query: 23 MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + W +++ + +DSR IQ G F+A G DG + A+A+GA A +V Sbjct: 14 VDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVECEG---- 69 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 + I + + + AS +G + +LAVTGT+GK+S A ++ + Sbjct: 70 VEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALNQ 129 Query: 140 SGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +G + Q +TTP P+ L +A + + G ++EASS Sbjct: 130 LSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEASS 189 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 GL +HRLDG ++ FTN +DH+DYH AY+ AK LF+ + S DD Sbjct: 190 IGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDWPGLRASVVN--VDDP 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + + SV QG K + T++ + G + Sbjct: 248 QGAALHAELQGSDLDLWSVSLQGPARLQAKHIVHTGAGLAFTVAEGAHTEVLQTQVIGLY 307 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L A+G+ A L+ +L VPGR E + + + VDYAHT ++L Sbjct: 308 NVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQPL-VAVDYAHTPDALH 366 Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L ++ + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNPR E+P+ Sbjct: 367 QALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQS 426 Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G + +R AI A+ DV+++AGKGHE G++ Sbjct: 427 IIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVVLIAGKGHEDYQETA-GQRVPFS 485 Query: 485 D 485 D Sbjct: 486 D 486 >gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] Length = 501 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 149/517 (28%), Positives = 232/517 (44%), Gaps = 52/517 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ ++ PE ++ I+ V+ DSR + G FVAI G DG F+PQ Sbjct: 8 LEKILGASVPESVDG------------IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQ 55 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+A GA +V P +VV + R L+ A+ G + + Sbjct: 56 ALANGASLVVAERDVE----------GAPTVVVPDARVALAALATATAGHPSHDVTVYGI 105 Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177 TGT+GK++ + + I G + T+ I + TT + L+ + Sbjct: 106 TGTNGKTTSSYVLHGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV HV +E SSHG+ HR+ G + A FTNL RDH+D H T + YF K RLFE Sbjct: 166 RDAGVEHVVLETSSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFE-- 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQV 291 + P + DDAY ++ +S + + ++ + Sbjct: 224 -WTDGPKLTNVDDAYGARIVAEVPGTLGFGVSENADYRITKVHPSDGGTAFTLTTPERFL 282 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + PL G++ V+N A+ + + +G+ ++ + + VPGRFE V Sbjct: 283 DGRDAPGVIELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPA 342 Query: 352 NS-RGGRIYVDYAHTSNSLEMILKNIRTI------------TSGRIIVVFGCGGDRDQGK 398 + +G + VDYAHT LE++L R + GR+I V+G G RD K Sbjct: 343 ATAKGFEVVVDYAHTEVGLELVLDVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAK 402 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEML 456 RP MG+ A LAD+ I+T+D+ EDP+ I E++ G +R +AIR A+ Sbjct: 403 RPKMGEAASRLADVNIITNDDTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQALTQA 462 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++VVAGKGHE V + G+ D ++ E+L Sbjct: 463 RPGDIVVVAGKGHEHVQHLPGGDVDFH-DTTVVTELL 498 >gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] Length = 477 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 28/477 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + +I V++DSR I+ G +FVAI G + DGH FI +AI GA IV++ + D Sbjct: 17 KNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQID-- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 + VD+ R L+ ++ + + ++ VTGT+GK++ +S + I + Sbjct: 75 -----GINYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLN 129 Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T + + TTP + K L + + + VE SSHGL HRLD Sbjct: 130 SPCTNIGTNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLD 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI F NL +H+D+H+ + YF+AKM LFE A + + K Sbjct: 190 GIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN-------AKKKIANVDDEYGRKAK 242 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + V I K I K+ F+ F VYNA+ A Sbjct: 243 ARFEDTYTFSLENESDFRAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIA 298 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +G + + + LE V RFEFV N RG I +D+AHT + E I K++ Sbjct: 299 AVNLLGYELEDIAKALESFTGVEARFEFV-NNDRGINIVIDFAHTPKAFENIYKSVPN-- 355 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 R I V+G GDR + R +GKI+ + ++VT D+P+ + E I +I+ GI Sbjct: 356 DKRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEAN 415 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 F+ +R AI+ AIEM +K D +++ GKG ET + EK + + + E+L Sbjct: 416 GEFVRIKDRKSAIKHAIEMADKGDFVLLLGKGQETFIKLKGNEKTPYSEKETVNEVL 472 >gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 515 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 147/515 (28%), Positives = 235/515 (45%), Gaps = 51/515 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L+ + + I + D+ + G +F+A+ G+ Sbjct: 1 MKLSELLAGQNHHIRQG------DPEKALITAGTAFDADRVVPGSLFIAVPGH------- 47 Query: 60 IPQAIAQGAEAI-----------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 + G A+ VV + T + ++ V + R+ ++ ASR Sbjct: 48 ----LEGGPGAVAPALARGAAAVVVEDGCVVP----TAAGDVCVVQVPDARRTAAVAASR 99 Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNR 161 +G+ + +A+TGT+GK+SV+ V+ G + IG + Sbjct: 100 YFGEPGRRMDMVAITGTNGKTSVSYMVESALRISEGARAGVIGTAGSRIGDELIPMPRSV 159 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 L+TP L L Y+ +GV V +EA+S GL HR+D + G FTNL +DH+D H Sbjct: 160 LSTPESPDLQYLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDVGVFTNLSQDHLDDHG 219 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 T + Y +AK+RLF A++ ADD + G Sbjct: 220 TMENYRDAKLRLF---QGLCEHAVVNADDPVGARIGA--MMPGAVTTYALDAEADFRATD 274 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + A + + T+ +G+ + P PG F V NAL A C +G D A ++ L ++ Sbjct: 275 LTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLGHDLAGLVSALGRMPQ 334 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 +PGRFE + T G + VDYAH+ +SLE +L +R ++ VFGCGGDRD KR Sbjct: 335 IPGRFERL-TTVGGTSVIVDYAHSPDSLEKVLGAVRGFARSAVVTVFGCGGDRDTTKRTD 393 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457 MG+IA +D+ ++T DNPR+EDPE I +++ GI + +R AI A+ Sbjct: 394 MGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERFTDRRTAIEFALSAAG 453 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++++AGKG E IV + D +R++ Sbjct: 454 PDDIVLIAGKGSEPYQIVGD-VLLPFSDVATVRDL 487 >gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] Length = 511 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 161/499 (32%), Positives = 242/499 (48%), Gaps = 24/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L + +++ DS + G +F A+ G + G F A A A Sbjct: 5 LDTLAQLSGGRVIGDASVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKAGA 61 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ +A D + PI+VV++ R L ++ +YG ++ VTGTSGK++ Sbjct: 62 VLTDAAG--LDLLTKDQETRPIVVVEDIRAVLGPISAEIYGHPTRDLTVIGVTGTSGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ +G S IG T T + LTTP L + + + ++GVTHV + Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVM 179 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L+ R+ G + G FTNL +DH+D+H T + YF AK +LF E A++ Sbjct: 180 EVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAE-RAVLC 238 Query: 248 ADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD + + + K A + V + G + Q+V ++ +G DF F Sbjct: 239 IDDEWGERMRGVAKSAGHPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRL 298 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPGEF + NA +A G+ A+G D A L +EK+ V PGR E + VDYAH Sbjct: 299 PLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAV-PGRMERIDRGQ-DFVAVVDYAH 356 Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 ++ +L +R T+GR+ +V G GGDRD KRPIMG A AD+ +VTDDNPR Sbjct: 357 KPAAIAAVLDTLRGQLEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPR 416 Query: 422 SEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 SEDP IRA ++ G E G+R AI ++ D ++V GKGHE +V Sbjct: 417 SEDPATIRAAVVEGARDAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV 476 Query: 476 TNGEKKMSVDCDIIREILG 494 NG+ D + + + Sbjct: 477 -NGKTLHFDDREEMARAIE 494 >gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 485 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 131/498 (26%), Positives = 217/498 (43%), Gaps = 33/498 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L ++ + ++ + + V +DSR + +G +F+ I G DGH F Sbjct: 5 RLSAILQNEMDDIF-----------DPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAE 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 A+A GA A++ + + P +VV +T++ AS Y + Sbjct: 54 DAVANGASAVISE---------YPLDLDVPNVVVADTKQTAGEVASVFYDHPSHRMRIYG 104 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A+ + + SG + + + TTP + L + L+ + Sbjct: 105 VTGTNGKTTTATLTYDLLRLSGRRAGIVSTIGARFHNQTIETANTTPEAVVLHRILAEMV 164 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GVT +E SSH L + R+ GI A +FTNL DH+DYH++ Y AK RLFE++ Sbjct: 165 DAGVTDCVLEVSSHALMEGRVAGIHFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVE 224 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AI+ + + VM ++ V I + V + ++ Sbjct: 225 VTNGEAIVLNAEDSASHVMAEFAPTRRAIMYSTTVDVE---ADVQVIWRDETVLVRMKEF 281 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F N A GL + ++ ++ L + GR E + T I Sbjct: 282 KLEVPVRFMGAFNAANLAAAIGLVSTSDMALRTIVSNVPGLTLPKGRLERLATE--DAEI 339 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y+DYAHT + LE L ++ ++VV GDRD KR MG+IA ++ IVT Sbjct: 340 YIDYAHTPDGLEKCLSTLQQ-DDRALVVVLSAAGDRDPTKRQDMGRIASRYSNEVIVTVH 398 Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + R EDP++I +++ GI ++ R EA+R A + +VV GKGH Sbjct: 399 DVRMEDPKQIIRDLVKGIQPDVKYVTFEAREEALRHAATQALEGKRVVVVGKGH-DHIER 457 Query: 476 TNGEKKMSVDCDIIREIL 493 + + +I+ E L Sbjct: 458 IGRQSIPFNESNILLEEL 475 >gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] Length = 489 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 134/499 (26%), Positives = 223/499 (44%), Gaps = 31/499 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D + +I + DSR + IF + G DGH I Sbjct: 1 MKLTDFFENV---------------PDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHI 45 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +AIA GA IV S I + + V + + A Y + + Sbjct: 46 DEAIANGAIVIVHSEPIEK------INPDITYIKVKDVVHVFNQVADSFYDYPSHHMTMY 99 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GKSSVA ++ I + +++ + ++ + +P+ + L + Sbjct: 100 GVTGTNGKSSVAWIIRNILNQIEPTAYVGTISIEYNNVKLPPLVASPNIDEVHGILRDMV 159 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ + + EASS +DQ RLD I FTNL DH+DYH T YFNAK +LF++ L Sbjct: 160 DAGIKNCAYEASSIAIDQGRLDAIDFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQ-L 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +E+ AI+ DD ++++ + + + + T+ + Sbjct: 219 KEEAIAIVNVDDPSGMKIVQ--DTQAKVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDH 276 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D+ L F +YN + A G+ + +++ L+ V GR E + + + Sbjct: 277 DYRLETNLIARFNIYNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERIQDG-QPFNL 335 Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AHT++ +E + + +IT RII + G G RD KRPI G+I D+ I+T Sbjct: 336 IVDFAHTADGIEKVCQYASSITPKDCRIIAITGSAGKRDTAKRPIFGEILDHYCDMIILT 395 Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +D+ R E +I +I GI ++ +R +AIR ++E+ ++ D ++V GKG+E Sbjct: 396 EDDSRGESVREIAEDIAKGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKGNEKFIA 455 Query: 475 VTNGEKKMSVDCDIIREIL 493 G + D I E+L Sbjct: 456 REFGRESYEGDDVICHEVL 474 >gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] Length = 564 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 135/511 (26%), Positives = 218/511 (42%), Gaps = 44/511 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + ++ + +++ + DSR +QAG +F A G DG +I AI GA AIV + Sbjct: 54 VIDVRGTDTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELP- 112 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 + + + V R +S F + Y ++ ++ VTGT GKSS SF+ Q+ Sbjct: 113 -----SYAAGVCYVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLL 167 Query: 138 QRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + + S TTP + + + L+ + G VE+SSHGL Sbjct: 168 RLAHKRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGL 227 Query: 195 D--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---------P 243 RL+ + AG F N+ ++H+++H T + Y K LF +L Sbjct: 228 SPLTARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSF 287 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ ADD ++ QG K + + + Sbjct: 288 GVVNADDPSAEYFYAATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIFE 347 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTN 352 S + + PL G F V N + +I A ++ L+KL + GR + Sbjct: 348 SGKSESIHARAPLAGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGRMCKI-QE 406 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + +DYAHT +S +M++ I+ G++IVVFG GG+RD KRP G+IA Sbjct: 407 GQPFEVLIDYAHTPSSFQMLMPPIKDRIAKQGGKLIVVFGSGGERDTKKRPEQGRIAAAY 466 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+ I+ D++PR EDP + I G P +R AIR A + N D ++ Sbjct: 467 CDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSELFIIPDRKAAIRKAFSLANPHDAVL 526 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + GKGHE I NG + +I R +L Sbjct: 527 LLGKGHENTIIYKNGAIPY-SEEEIARTLLR 556 >gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis TXDOH] Length = 514 Score = 254 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +FVA DG FI A+A+GA A++ Y + F A Sbjct: 31 LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +E+L V GR + +G + VDYAHT ++LE L+ +R Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P+KI +I+ Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] Length = 568 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 128/549 (23%), Positives = 214/549 (38%), Gaps = 65/549 (11%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + +++ + I + + + ++ DSR ++ ++F A+ G G+ FI QA++ G Sbjct: 15 EETDYKIVAEDGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCG 74 Query: 68 AEAIVVSSAYSLQDFS------ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--A 119 A A+V + ++ S A+ + V ++R +S +S Y ++ Sbjct: 75 AGAVVFQDEITQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYG 134 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSY 176 VTGT GKSS SF+ Q+ + +G+ + I + TTP + + L Sbjct: 135 VTGTEGKSSTVSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYE 194 Query: 177 LSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G TH VE+SSHGL +RL + F N+ +H+++H T + Y + K LF Sbjct: 195 MVCNGCTHAVVESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLF 254 Query: 235 EELLPKES-------------PAIIYADDAYSKEVMKRAHNA------------------ 263 L ++ +D + + Sbjct: 255 RALDLHNHEKTIAGVATKIPAFGVVNLEDPAASYFASCTKHKTIGFTTEGKAGKQAALGL 314 Query: 264 ----------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 S + +++ E +PG F Y Sbjct: 315 SSPPLPEIPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAY 374 Query: 314 NALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N A I + +KL V GR V + + VDYAHT +S E I Sbjct: 375 NITAAILAVHGTTGISIEKLALCAQKLTSVKGRM-TVIDEGQPFEVIVDYAHTPSSFETI 433 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 ++ G++I VFG GG+RD KRP+ G+IA DI I+TD++PR ED I +I Sbjct: 434 FPPLKNRAMGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPRKEDRMTIIEQI 493 Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 G +R +AIR A M + D++++ GK HE I + K Sbjct: 494 ALGARKEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLGKSHENSIIYADNAIKY-D 552 Query: 485 DCDIIREIL 493 + + L Sbjct: 553 EISEAKNAL 561 >gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] Length = 496 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 126/504 (25%), Positives = 223/504 (44%), Gaps = 24/504 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+++DL+ + +I ++ +D+R++ G FVAI G + DGH + Sbjct: 1 MQVEDLLRAV------PSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 Q A GA+ +VV +V +T + +L A++ +G+ E N++ Sbjct: 55 DQVAAAGAKLMVVE-----VLPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++S + + R G + IG + TTP+ + L + + + Sbjct: 110 AVTGTNGKTTISSLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233 S G +EASSH L RL + FTNL R+H+D+H+T + Y A +L Sbjct: 170 VSVGCQDALIEASSHALALGRLWATDIDCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQL 229 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ + I D +M +A +A S+ + ++ Q + Sbjct: 230 GQKFAGEGPRLAIINADDPYASIMMQATSADVLTYSLEDPKASAYADQLAVQDGNQTFRL 289 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + P+ G + V N + A + V++ + V GR + + Sbjct: 290 HYRNQTYQVVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQRLDLG 349 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411 ++ VD+AHT +++E +L+ ++ + R++ + G G +RD G RP +G + +D Sbjct: 350 QE-FQVVVDFAHTPDAIERVLQELKAQSPKRLVTIIGHSGGNRDSGARPEIGDKVFEYSD 408 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPR E KI AE+I + +R AI I D+LV AGKG Sbjct: 409 WIIFTADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGS 468 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E I+ + +K + I Sbjct: 469 EPYQIIGD-DKLPYDEVTEIEAAF 491 >gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] Length = 507 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 150/483 (31%), Positives = 224/483 (46%), Gaps = 22/483 (4%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + + V+ S+ ++ G ++ A+ G + G F A GA A++ A Sbjct: 27 PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139 + + P+LVV + R L A+ +YG ++ VTGT+GK+S + V+ + Sbjct: 83 VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G + IG T D+ TTP L L+ GV V +E SSH L R Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G++ G +TN G DH+D+H + YF AK +LF+ + ++ DD + + K Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317 + G + Q+ T+ LPG V NAL+ Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A L +A+G+D + VPGR E V + R VDYAH +N++E +L +R Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433 +T GR+I V G GGDRD+GKRP+MG +A AD+ +VTDDNPR+EDP IRAE++ Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435 Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 IE R AI A+ M DV+ V GKG E + GE D + Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLGKGQERGQEIG-GEVLPFDDRVELAA 494 Query: 492 ILG 494 L Sbjct: 495 ALR 497 >gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei NCTC 13177] Length = 514 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 220/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGRI---IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARSGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phytofirmans PsJN] gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phytofirmans PsJN] Length = 515 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 144/480 (30%), Positives = 212/480 (44%), Gaps = 36/480 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +D+R + AG F A DG FI AI +GA A++V + Sbjct: 30 HLHADTRSLAAGDAFFAY---AVDGADNRPFIEGAIERGAAAVLVQPEGFSGAIDPSNT- 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V + AS Y +++L VTGT+GK+S + ++ G Sbjct: 86 ----LAVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAI 141 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 142 IGTLGSGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFD 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH T +AY AK RLF + A + D + + + Sbjct: 202 IAVFTNLTQDHLDYHHTFEAYEAAKARLFAW---PDLRAAVINRDDAAGRRLLASTQGHA 258 Query: 266 RVLSVGYQGKFIHLKKVCA----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 R ++ G K A + + + + G F V N Sbjct: 259 RTIAYGLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNL 318 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL 373 L G +A + + L KL V GR + +G + +DYAHT ++LE L Sbjct: 319 LGVLGALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 378 Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + +R + + R +I +FGCGGDRD KRP+MG IA +AD +VT DNPRSEDP+ I Sbjct: 379 EALRPMATARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQAIIE 438 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I G+ +R AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 439 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497 >gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei MSHR346] gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei MSHR346] Length = 514 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 305] gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 305] Length = 514 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei S13] gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei S13] Length = 514 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] Length = 514 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +FVA DG FI A+A+GA A++ Y + F A Sbjct: 31 LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLVGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +E+L V GR + +G + VDYAHT ++LE L+ +R Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P+KI +I+ Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 516 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 162/519 (31%), Positives = 239/519 (46%), Gaps = 41/519 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNK-EDGHLFIPQ 62 + D LI+ L + V +DSR IQ+G IF A GN DG FI Sbjct: 5 LKIDTNRLIDHLHTLANSSAK-----VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINA 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+ GA A+V + L+D + + + V N S+ YG + NI+ V Sbjct: 60 ALENGAAAVV----FDLKDMDSQLTDHPQCFAVKNLAAQAGQLCSQWYGHPSKELNIIGV 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S+ ++ Q S + +G T TTP L L+ L + Sbjct: 116 TGTNGKTSITQWLAQALDASNHRTAVLGTLGTGFPGALVQTGYTTPDAPKLQTQLAELRN 175 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G V++E SSH L Q R+ G + +FTNL +DH+DYH + Y AK +LF++ Sbjct: 176 AGAKQVAMEVSSHALHQERIAGTDIQCAAFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGL 235 Query: 240 KESPAIIY-------ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----- 287 K + + A + +K+ MK A G++ L+++ A Sbjct: 236 KHAVINLDDAFGRELAMNLLAKDGMKVWAYALSPSAFEGFEKFGDRLQRIYAKETTLSGA 295 Query: 288 -KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + + PL GEF V NAL ++ G+ + + + +L+ V GR Sbjct: 296 GYDSIFVYGKVGSAQLHIPLLGEFNVSNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRM 355 Query: 347 EFVGTNSRGGR----IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKR 399 E + VDYAHT ++LE L+ +R + G+I VFGCGGDRD GKR Sbjct: 356 ELIRFGKPQKAGSLLAVVDYAHTPDALEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKR 415 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEM 455 +MG +A AD ++T DNPRSEDP+ I I GI +R AI AI Sbjct: 416 ALMGAVAERNADHILITSDNPRSEDPQAIMQMIRGGIQAESQNIQMIADRAAAIMAAIRH 475 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +D+++VAGKGHET + NG+K D + IR G Sbjct: 476 ADARDIVLVAGKGHETTQEI-NGKKFDFSDQEHIRLAAG 513 >gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 9] gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pakistan 9] gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pakistan 9] Length = 514 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLTGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51867] Length = 507 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 208/502 (41%), Gaps = 23/502 (4%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + E +L + +++ ++ + + +F A+ G + G F A + Sbjct: 5 IERIATECAGEL-HLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 A AIV + T P++V D+ R L ++ + G + + +TGTS Sbjct: 61 QAAAIVTDKPGY--EILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTS 118 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ +G + IG T T + LTTP L + + GVT Sbjct: 119 GKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVT 178 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV +E SSH + R+ G+ FTNL +DH+D+H T + YF+ K +LF P + Sbjct: 179 HVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I D + R +S + + + Sbjct: 239 KSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRV 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 A A VPGR E + N +G VDYA Sbjct: 299 TLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGRMEKI-DNDKGVLAVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +LE +K +R GR+I VFG GGDRD GKRPIMG A+ AD+ I+TDDNPRSE Sbjct: 358 HKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPGFIE------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DP IR I G F+ G+R +AI A+ D ++VAGKGHE Sbjct: 418 DPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQ 477 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 +V GE + D +R L Sbjct: 478 GQLVG-GEMRDFDDRIKLRRAL 498 >gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei DM98] gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 112] Length = 514 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis Bt4] Length = 514 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +FVA DG FI A+A+GA A++ Y + F A Sbjct: 31 LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +E+L V GR + +G + VDYAHT ++LE L+ +R Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P+KI +I+ Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1655] gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1655] Length = 514 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + VTGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 23344] gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei GB8 horse 4] gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710b] gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei SAVP1] gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10229] gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10247] gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei PRL-20] gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 14] gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 576] gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 10399] gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pasteur 52237] gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei FMH] gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei JHU] gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710a] gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 406e] gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei 2002721280] gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 23344] gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia pseudomallei 1710b] gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei SAVP1] gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10247] gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei FMH] gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei JHU] gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei 2002721280] gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 406e] gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pasteur 52237] gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 10399] gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 576] gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei GB8 horse 4] gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei PRL-20] gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710a] Length = 514 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + VTGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei K96243] gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 91] gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 7894] gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei BCC215] gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei K96243] Length = 514 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + VTGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] Length = 485 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 116/476 (24%), Positives = 206/476 (43%), Gaps = 14/476 (2%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + SDSR++ IF + G DGH +I A+ QGA+ IV S + + Sbjct: 6 EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHR--- 62 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 + V+N L+ A Y + + VTG+SGK+ VA ++++ Sbjct: 63 ---GVLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKM 119 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + + + TTP I++ + L+ + + V V++E SSHGL R+DG+ Sbjct: 120 GYIGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVH 179 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTN+ +H+D+H T + +K +LF + K + D + + Sbjct: 180 FDIAIFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAIL--NTDEVRFYNLVKDSIR 237 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + + + + + + + P+ G F + N L + Sbjct: 238 CHLLTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITSML 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382 A+ + VLE + + V GR E + + VDY + S E + + +++ +G Sbjct: 298 ALEMPMDQVLESVGYIRGVDGRMELLEHPY-PFTVIVDYCQHAKSFEKVFQFAKSVQTNG 356 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440 RII VFG G ++ KR +GK+A + I+T ++ R ED I +I + + Sbjct: 357 RIIAVFGAPGKKNYNKREKIGKLANQYCNQVILTAEDNRDEDIHDICLDIQEYLEKPVSV 416 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +R AI AIE+ N D++++ GKGHE + G + D + E + I Sbjct: 417 IIEDRRIAIEQAIEIANHGDIILILGKGHEQFMASSIGNEPYPGDKYVALEAIDKI 472 >gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein [UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ( MurF); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (MurE) ] [Thiomonas sp. 3As] Length = 975 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 146/469 (31%), Positives = 212/469 (45%), Gaps = 15/469 (3%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S+DSR +Q G +FVA G D F+ QA+ A ++ + ++ IL Sbjct: 27 SADSRSLQPGEVFVAWPGAARDPRQFVTQAL----AAGAAAALVEAEGVQHFGFTDPRIL 82 Query: 94 VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 VD + A+ YG E +LAVTGT+GK+S A + Q +G IG Sbjct: 83 AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 Q TTP P+ L L+ L QG ++EASS GLD+HRL G + A +FT Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH AY AK LF + + I A S + + Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALFVWPGLQHAVLDIDDPYAASVLLADCRSRGLQVQTTA 262 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + V Q++T+ P+ G F + N LV A L G+D A Sbjct: 263 LIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDDA 322 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVV 387 + L + VPGR + +G +DYAHT ++L+ L+ +R + G++ V Sbjct: 323 AIAAALRTVRAVPGRMQMLGGIGAPL-AVIDYAHTPDALDKALQALRPVTAKRKGKLWCV 381 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FG GGDRD KRP+M + AD ++T DNPRSE P I +++ G+ + + Sbjct: 382 FGAGGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLIED 441 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R AI + DV+++AGKGHE + G K+ D R L Sbjct: 442 RAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMAL 489 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 31/394 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E ++ + +DSR + G +FVA+ G + D H F+PQA A A +L Sbjct: 516 AEVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAA--------GARALLAEQGV 567 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + +T + L L A + ++AVTG++GK++V + I Sbjct: 568 GACGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDR 627 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ ++ A+ L ++ AS + Sbjct: 628 RLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLA----------EPT 677 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N R+H ++ + +A + LP+ A+ A DA + + +A Sbjct: 678 VALVNNAQREHQEFMHSVEAVAHENG-AVLAALPQTGVAVFPAADAQAAIWVAQAAGRRV 736 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++ + + +V + V + + L G NAL A Sbjct: 737 LRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNARNALAATAA 796 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTSNSLEMILKNIR 377 +A G + LE V GR Y +S+ + + Sbjct: 797 ALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSYNANPDSVRAAIDVLT 856 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 + GR +++ G GD +G A Sbjct: 857 EL-PGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889 >gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 575 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 225/497 (45%), Gaps = 24/497 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +L P ++ ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 66 LGELAARLGAGPQDAG--EVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAA 123 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSS 128 I+ A + + + P+LV D+ R + A+ +YG+ + +TGTSGK++ Sbjct: 124 ILTDPAGAER----AAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTT 179 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G S+ IG + TTP L + + +GV V++ Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF K Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSKLGVVNF- 298 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306 DD Y + ++ A + G+ + V T+ + PL Sbjct: 299 -DDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAPL 357 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N L A GID + + + + VPGR E + VDYAH + Sbjct: 358 PGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQ-PYLAVVDYAHKT 416 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476 Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I A ++ G R + + A+ D ++VAGKGHE + + Sbjct: 477 GILAAMLSGAAEVPVHE-RGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-H 534 Query: 478 GEKKMSVDCDIIREILG 494 G + D ++RE + Sbjct: 535 GVVRPFDDRKVLREAIE 551 >gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106a] gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei B7210] gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106b] gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106a] gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106b] Length = 514 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + VTGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLTGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 668] gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 668] Length = 514 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A + Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPADGLDS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDSPTPAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + KL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ G +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] Length = 492 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 121/488 (24%), Positives = 193/488 (39%), Gaps = 19/488 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L+ + KI + SDSR+++ IF I G DGH ++ AI QGA+ IV S Sbjct: 1 MKRLNELFKVESDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHS 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 + V + L+ A Y + + VTGTSGK+ VA Sbjct: 61 KPL------RRYYQGIVYVQVPDVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARV 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V ++ R + + TTP PI L + + + V ++E SSH Sbjct: 115 VARLLGRYLKMGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSH 174 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYAD 249 GL R+D + FTN +H+D+H T + RL +E A Sbjct: 175 GLALKRVDSVNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRF 234 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + K + + I + + + I ++ + F P+ Sbjct: 235 NHFLSMNYKDLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAP 294 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AHTS 366 F + N L A+ + ++ ++ + V GR E V I VDY AH Sbjct: 295 FNISNTLAILTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPVKQ-PFHIIVDYCQHAHNF 353 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + + ++ +G +I VFG G +D KR +G +A D I+T+ + R +D E Sbjct: 354 EEVFKFVYGVKG--NGHLIAVFGAPGRKDIHKRSKIGALANKYCDYVILTEQDERDDDIE 411 Query: 427 KIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I I I NR AI+ AI+ DV+++ GKGHE G Sbjct: 412 GICEQIQEQIVDPISVIITNRRFAIQQAIDAACAGDVILILGKGHEQFMTSLVGNTPYPG 471 Query: 485 DCDIIREI 492 D I +E Sbjct: 472 DKFIAQEY 479 >gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] Length = 501 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 222/475 (46%), Gaps = 26/475 (5%) Query: 29 KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + +DSR + G F+A G DG + A+A+GA A +V +D Sbjct: 20 RVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQ----EDVEPFGL 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-- 143 + I + + L A++ +G+ E +LAVTGT+GK+S A ++ Sbjct: 76 AGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALNGLSKKEL 135 Query: 144 -----SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G + +TTP P+ L +A + + +G+ ++EASS GL + Sbjct: 136 PALAGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEASSIGLAEQ 195 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL G ++ FTNL +DH+DYH AY+ AK LF+ P A++ DDA+ + Sbjct: 196 RLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFDW--PGLRAAVVNIDDAHGARLH 253 Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 G + SV QG + + T++ + L G + V N L Sbjct: 254 AELQGGGLDLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGLYNVSNLL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A+G+ A L+ +L VPGR E + + + VDYAHT ++L L + Sbjct: 314 GVIAGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQPL-VAVDYAHTPDALHQALAAL 372 Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNPR EDP I +I+ Sbjct: 373 RPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADRVIVTSDNPRGEDPRAIIHQIL 432 Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G + +R AI A+ DV+++AGKGHE G+++ D Sbjct: 433 LGTIAGTSVRAEEDRAAAICLAVAEAEAADVVLIAGKGHEDYQETA-GQRQPFSD 486 >gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis MSMB43] Length = 514 Score = 252 bits (644), Expect = 8e-65, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +FVA DG FI A+A+GA A++ Y + F A Sbjct: 31 LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAGGLDP 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 84 ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T AY AK +LF + AI+ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRC--AIVNRDDPVGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A ++ + D G F V N L Sbjct: 262 IAYGIDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +EKL V GR + +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I+ Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE+ + G+K+ D D R Sbjct: 442 GMQDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHESTQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] Length = 506 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 144/494 (29%), Positives = 223/494 (45%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +QL + ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELADQLGSSAPESA-AEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + S P+LVVD+ R + A+ +YG + + +TGTSGK++ Sbjct: 76 VLTDPTGAER----AAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + I + TTP L + + +GV V++E Sbjct: 132 TAYLVEGGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG G FTNL +H+++H + YF AK +LF K Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRGKLGVVN--V 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307 DD Y + ++ A + G+ + V T+ + PLP Sbjct: 250 DDEYGRRLVNEATVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSPLP 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A G+D + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +L+ +R +T G++ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDTTKREPMGAAAARLADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G +R AI A+ D ++VAGKGHE + G Sbjct: 429 ILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 488 VRPFDDRQVLREAI 501 >gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Delftia acidovorans SPH-1] gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans SPH-1] Length = 509 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 139/479 (29%), Positives = 221/479 (46%), Gaps = 26/479 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G F+A G DG + A+ +GA A +V + Q A S I Sbjct: 30 LQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEA----QGVEAFGFSGEHI 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS----SFQ 146 + + L A + + I LAVTGT+GK++ A ++ + L Sbjct: 86 AALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTTTAWWLAHALAQVKLQERSGCAL 145 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G A + +TTP P+ L +A + G+ ++EASS G+ +HRLDG ++ Sbjct: 146 VGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLAACAIEASSIGIVEHRLDGTRIR 205 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN +DH+DYH + QAY++AK LF+ P A++ DDA+ + + Sbjct: 206 VALFTNFTQDHLDYHGSMQAYWDAKAALFDW--PGLQAAVVNVDDAHGARLWATLQSRKQ 263 Query: 266 R-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + K + T+ G + G++ V N L Sbjct: 264 PAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRMHTRMVGQYNVSNLLGVLA 323 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377 +G+ + L VPGR + + + + VDYAHT ++L+ L+ +R Sbjct: 324 ALRCLGLTLDQAVAACVHLEPVPGRMQQIVQPGQPL-VAVDYAHTPDALDKALRALRPAA 382 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR+ VFGCGGDRD KRP+MG+ A AD +VT DNPRSE P++I +I+ G+ Sbjct: 383 EQRRGRLWCVFGCGGDRDATKRPLMGQAAQKNADCVLVTSDNPRSEVPDRIIDQILAGMQ 442 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI +++DV+++AGKGHE G++ D + L Sbjct: 443 PGENLQSQADRAAAIAQAIAHASERDVVLIAGKGHEDYQETA-GQRHPFSDMAEAHKAL 500 >gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 489 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 133/488 (27%), Positives = 227/488 (46%), Gaps = 22/488 (4%) Query: 14 LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L L + + + +I VS DSR ++ W+FV G DG +I A+ +GA ++ Sbjct: 4 LNELLGMLHIACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRKGAV-VL 62 Query: 73 VSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 + + + + + ++ +G + ++ V+GTSG Sbjct: 63 CDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIGVSGTSG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SVA + I ++ +F+IG + Q TTP LA L QG TH Sbjct: 123 KTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEAIQQGFTH 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + +E SSH +DQ+R+ + A +TN+ +DH+DYH T+ Y K +L L Sbjct: 183 IVMEVSSHAIDQNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKLRRYLKKDGFII 242 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I + +MK H + +++++G+ ++ + TI+ + F+ Sbjct: 243 I----NKDFPYLMKLQHLSDAKLITIGFDAAHFTIEDMHLSEQGAIFTING----YSFVI 294 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G+ VYN A LC + I ++ + L V GR E + + +DYAH Sbjct: 295 PLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELMKGK--KHTVLLDYAH 352 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +++E +++ R+I G++ +V GCGG+RD+ KR +M A +D+AI T DNPR E Sbjct: 353 TPDAVEKLMEFARSICQGKLYIVVGCGGERDRSKRKLMADAACKYSDMAIFTSDNPRHES 412 Query: 425 PEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++ + NR AI+ I++ + D++V+AGKG+E V G Sbjct: 413 LSTILLDMCKTTYQNYEVVENRYFAIKYTIKIAKESDIIVIAGKGNEKTQDVE-GRMYPF 471 Query: 484 VDCDIIRE 491 D D +R+ Sbjct: 472 DDADCVRK 479 >gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia oklahomensis EO147] Length = 514 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 217/482 (45%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG F+A DG FI A+A+GA A++ S D S Sbjct: 31 LHADTRSLQAGDAFIAY---AVDGADNRPFIADALARGAAAVLYQPEGSAADGLEPATS- 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 87 ---LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTLEAYEAAKTKLFAW--RGLRLAVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + KV A ++ D D G F V N L Sbjct: 262 IAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +EKL V GR E +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I Sbjct: 382 PIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAA 441 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis 3_1_45B] gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis 3_1_45B] Length = 510 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 162/489 (33%), Positives = 236/489 (48%), Gaps = 34/489 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR ++ G IF A+ G K DG FI A A+GA ++ + S + + + Sbjct: 21 HLRLDSREVKPGDIFCAVPGEKVDGRTFIRVAAARGAAGVIYEAETSQRPEHYPLPAKP- 79 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V++ R+ L A+R Y + ++ +AVTGT+GK++ + + G S IG Sbjct: 80 ---VEHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGT 136 Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 LTTP L L L G +EASS GLDQ R+ G G Sbjct: 137 VGVFFAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVG 196 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYHQT +AY AK LF P A++ A DA+S++ A G + Sbjct: 197 VFTNLSRDHLDYHQTMEAYGEAKGLLFAW--PGLKAAVLNASDAWSRKYADAAQKNGSEI 254 Query: 268 LSVGYQG------------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G +G + K++ H + T+ + ++F G F V NA Sbjct: 255 WVTGLEGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNA 314 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L AA A G V+ LE L PGR + ++ VD+ HT ++LE ++ Sbjct: 315 LEAAAAAAACGHPIEKVVRALEALTPPPGRMQIFESDGMPL-GVVDFGHTPDALEKAIEC 373 Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + GR+ VFGCGGDRD GKRPIMG+IA L+D IVT DNPR+E+P+ I I Sbjct: 374 LIPNARARGGRLWTVFGCGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAI 433 Query: 433 IHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + G+ + +R EAI A+ + +D+++VAGKGHE I+ +G VD Sbjct: 434 MQGVQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKGHECEQILNDGP-HHFVD 492 Query: 486 CDIIREILG 494 +++RE Sbjct: 493 GEVLREAFN 501 >gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 461 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 153/464 (32%), Positives = 226/464 (48%), Gaps = 24/464 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + L G F V N L+A +A+G +L+ +L V GR E T Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI + Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455 VTDDNPR+E+P I +I+ G+ R EA+ AI Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAISR 454 >gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia oklahomensis C6786] Length = 514 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 215/482 (44%), Gaps = 31/482 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG F+A DG FI A+A+GA A++ D S Sbjct: 31 LHADTRSLQAGDAFIAY---AVDGADNRPFIADALARGAAAVLYQPEGFAADGLEPATS- 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + AV TGT+GK+S ++ I Sbjct: 87 ---LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVI 143 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH+T +AY AK +LF A++ DD + ++ Sbjct: 204 AVFTNLTQDHLDYHRTLEAYEAAKTKLFAW--RGLRLAVVNRDDPAGRRLLANLAGRVRT 261 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + KV A ++ D D G F V N L Sbjct: 262 IAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVL 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L +E L V GR E +G + VDYAHT ++LE L +R Sbjct: 322 GTLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+KI +I Sbjct: 382 PIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAA 441 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G+ +R AI A+ ++DV+++AGKGHE + G+K+ D D R Sbjct: 442 GMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500 Query: 492 IL 493 L Sbjct: 501 AL 502 >gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] Length = 486 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 134/507 (26%), Positives = 213/507 (42%), Gaps = 47/507 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE-- 54 M L++L E + ++ DSR ++ G++FVA+ G ++ Sbjct: 1 MTLKELFAPLGQE-----------APPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPL 49 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 DGH FIP+A+ +GA A+V +L P V ++R+ L+L A R YG+ Sbjct: 50 DGHAFIPEALRRGAIAVVGEQDLTLP---------VPYARVADSRQALALLARRFYGEPD 100 Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 + VTG+ GKS+ A + + + + L S G + TTP + Sbjct: 101 RALRLFGVTGSKGKSTTAFLLHHLLEEAALLSTV-GLRLGGEARPPIGHFTTPEAPEVYA 159 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +G+ +E SSH L R++G+ G F N D A Sbjct: 160 FLREAADRGLREAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTPE---AYFN 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L+ + A++ + + + +R H V +G + T Sbjct: 217 AKTLLVERSDLAVLNTSLTHLERLRQRPHLLFGPGGEVWAEGVRE--------EEGLRFT 268 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + PL G V NAL A+ +A G+ VLE L VPGR E V Sbjct: 269 LHTPWGKGEVHLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPGRMEVVQEK 328 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 R+ +D+AHT SLE L+ +R T GR+++V G G+RD +R +G++A LAD Sbjct: 329 --PFRVVIDFAHTGKSLEAALRTLRPTTQGRLLLVVGAAGERDPRRREDIGRVAARLADK 386 Query: 413 AIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 A T+++ R+ED I F +R EAI AI + D +++AGKG Sbjct: 387 AFFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKG 446 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495 HE E + ++ + L L Sbjct: 447 HEATLE-RGQEALPWNEREVALKALRL 472 >gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 517 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 152/506 (30%), Positives = 230/506 (45%), Gaps = 28/506 (5%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L + ++ +S + G +F A+ G + G F A Sbjct: 6 TLKRLAEISGGTVIGDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AA 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 AI+ + A P+LVV++ R L ++ +Y + IL VTGTSGK+ Sbjct: 63 AILTDAEGKRILNDAG--EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + ++ +G S IG T T + LTTP L + + + S+GVTHV Sbjct: 121 TTSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVV 180 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G + G FTNL +DH+D+H T + YF AK LF+ + I Sbjct: 181 MEVSSHALSLGRVQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVI- 239 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKD 299 DD + + + +RA +S QG + Sbjct: 240 CVDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGT 299 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+F P+PG F + NA +A G+ +IGI+ + LE +EK+ V PGR E V Sbjct: 300 FEFRLPMPGTFNIANAALATGMAASIGIEPQVFLEGVEKVAV-PGRMERVDRGQ-DFVAV 357 Query: 360 VDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH ++ +L+ +R ++GRI +V G GGDRD KRP+MG A AD+ +VT Sbjct: 358 VDYAHKPAAIAAVLETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVT 417 Query: 417 DDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPR+EDP IRA ++ G E G+R +AI + D ++V GKGHE Sbjct: 418 DDNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHE 477 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496 ++ + D + + L + Sbjct: 478 VGQLIGD-TVHHFDDREEMARALEAV 502 >gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptothrix cholodnii SP-6] gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii SP-6] Length = 513 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 142/487 (29%), Positives = 213/487 (43%), Gaps = 35/487 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR ++AG F+A G+ DG ++ A+A GA A ++ + + A + I Sbjct: 28 TDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAA----AFGFDDERIAA 83 Query: 95 VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 + + A R YG+ + +A +GT+GK+S A + Q +G IG Sbjct: 84 LPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGTLGV 143 Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + LTTP P+ L ++L + G ++EASS G+ +HRLD + Sbjct: 144 GEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDAAPI 203 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +TN DH+DYH AY+ AK LF+ P A I DDA + G Sbjct: 204 RVALYTNFTPDHLDYHGDMVAYWLAKRALFDW--PGLQAAAINVDDAQGAVLADELAARG 261 Query: 265 CRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 L ++ + + + T+ D L G + N L G Sbjct: 262 DLDLWTYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVIGGL 321 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGT----------NSRGGRIYVDYAHTSNSLEMI 372 A+G+ A + VPGR V ++ VDYAHT ++L+ Sbjct: 322 RALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDALDKA 381 Query: 373 LKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L +R + GR++ VFGCGG+RD KRP MG IA LAD VT DNPR E+P+ I Sbjct: 382 LSALRPVAHAQGGRLVCVFGCGGNRDATKRPQMGAIAAQLADAVCVTSDNPRLEEPQAIV 441 Query: 430 AEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I+ G G +R AI + +DV+++AGKGHE + G K+ D Sbjct: 442 DQILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKGHEDYQDIG-GVKRPFSDI 500 Query: 487 DIIREIL 493 D+ L Sbjct: 501 DVATAAL 507 >gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] Length = 514 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 132/510 (25%), Positives = 223/510 (43%), Gaps = 28/510 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ +L + E +I ++ DSR + + ++F A+ G DG FI Sbjct: 9 MN-RKMLNNILSKLDKNMIKEVRGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFI 67 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN-- 116 AI QG+ IV ++ D N + +D N ++F+S F+ Y + + Sbjct: 68 ESAIQQGSNVIVHTNDIDSYD------PNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLK 121 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAK 172 I+ VTGT GKSSV ++ + + G+ I + + R +TP + Sbjct: 122 IIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHL 181 Query: 173 ALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 LS + V + VE++SHGLD RL I TN+ +H+++H T Q Y NAK Sbjct: 182 VLSKMVENNVEYAIVESTSHGLDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAK 241 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + LF I+ DD + + S+ + + K+ + Sbjct: 242 LNLFSSADANGGFGIVNMDDNNFSVFLNAINR--VYTYSLENKNADFFVSKINEQMGFIE 299 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFV 349 + +D L G F V N + A + + I + ++E L + + GR + V Sbjct: 300 FEFYHKDVKYDARVNLTGSFNVENVMAALIVVSQVMNIHISELIEKLVNVEGLCGRMQGV 359 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + +DYAHT + I + + R+I VFG G+RD KR + G+IA Sbjct: 360 DFGQ-DFSLIIDYAHTPGAFLKIFPMFKRLAKNRLISVFGSAGERDTFKRKLQGEIADRY 418 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 +DI I+ D++PRSED +I +I GI +R AI A+++ D++V Sbjct: 419 SDIIILCDEDPRSEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLVV 478 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I + + +I++I+ Sbjct: 479 TLGKGHESSIIYED-RSIFWDEQAVIKDII 507 >gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 513 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 230/499 (46%), Gaps = 35/499 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+++++ + L + ++ ++ +S I+ G++F+AI G K+DGH++I Sbjct: 27 MKIKEMLT------MGHLEYSDTLDQSLEVKGITDNSNEIKPGYVFIAIKGYKKDGHIYI 80 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QAI GA I+ + + P L V + RK L A Y ++ ++ Sbjct: 81 QQAIINGAILIIGENEL--------MNLEVPYLKVKSARKALGQVAKLFYKDPSKDKIMI 132 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++++ F++ + ++ G S IG + I+ TTP+ + + L Sbjct: 133 GITGTNGKTTISFFIKHLLEKQGYSVSSIGTIHNEINGKKIKTINTTPNAKTINQ---LL 189 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V +E SS GL+Q RL+GI+ F NL DH+DYH T + YF K LF++ Sbjct: 190 VASTDQVVVMEVSSQGLEQDRLEGIQFDYALFNNLQHDHLDYHNTMEEYFECKALLFQK- 248 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L AII +DD++ ++++ G ++L+VG Q V++ + Sbjct: 249 LKPNGTAIINSDDSWGLKLIEHLTAEGKKILTVGEQSFSNV---QILSKELNDVSVMHKN 305 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ PLPG +YN +++ +G+ V ++ + GRFE Sbjct: 306 MEYSLRTPLPGMHNLYNLSMSSCAVHELGVPYEKVKPYMSDFTGISGRFELFHLE-NNVT 364 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE+ + + II VFG G+RD KR M +I L+D +I+T Sbjct: 365 VVVDYAHTPDALEIAINTAINNGANHIITVFGFAGNRDTSKRKAMLEIVTRLSDSSILTV 424 Query: 418 DNPRSEDPEKIRAE---IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +K+ + I +R AI+ AI+ D +++ GKGHE Sbjct: 425 TELFGSTIDKLYTDYVMIQKECQVEDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKGHEL 484 Query: 472 VHI-VTNGEKKMSVDCDII 489 K D + + Sbjct: 485 YKENYNLNTK---SDQETV 500 >gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp. PRwf-1] gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter sp. PRwf-1] Length = 569 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 151/524 (28%), Positives = 238/524 (45%), Gaps = 60/524 (11%) Query: 27 ERKINEVSSDSRHIQAGWI------FVAIVGNKE---DGHLFIPQAIAQGAEAIVVSSA- 76 + ++ DSR + FV + + ++ A+ Q A I+ Sbjct: 38 DVPFSKFVLDSRQLAKRDASSAPAAFVLLKSQTQPLQKSQQYVQTALPQ-AAFIISEIDP 96 Query: 77 ----YSLQDFSATIRSNTPILVVDNTRKFLSLF----------------ASRLYGKHPEN 116 D + + PIL V + R L A L P Sbjct: 97 QQLGLEGLDKPSDSSPDCPILFVPDIRDVLGTLIQLSLLSDDALSQIGDAQSLAQTLP-Q 155 Query: 117 ILAVTGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLA 171 ++AVTGT+GK++++ + Q+CQ +S +G TT + + Sbjct: 156 VIAVTGTNGKTTISQLMAQLCQFSEVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALAVQ 215 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +GV +++EASSHGLDQ RL G+ + +TNL RDH+DYH Q Y AK Sbjct: 216 GFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYAQAKA 275 Query: 232 RLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 RLF++ + + A+I ADD ++ +++ A N+G V QG FI + Sbjct: 276 RLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNAYFIA 335 Query: 291 VTISVE-----------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 TI PL G F V N L A IA+GI+ + +++L Sbjct: 336 KTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPALVKQL 395 Query: 340 HVVPGRFEFVGTNSRGGR-----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 H GR + V + +G + VDYAHT ++L +L ++++ SG + +FGCGGDR Sbjct: 396 HGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGCGGDR 455 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAI 449 D+GKRP+M + L AD ++T DNPRSEDP+ I ++ G+ +R +AI Sbjct: 456 DKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIADRKQAI 515 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+E D++V+AGKGHET + G + D ++++ L Sbjct: 516 EYAVEHAAADDIVVIAGKGHETYQEIK-GVRYDFDDRLVLQQAL 558 >gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] Length = 520 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 147/479 (30%), Positives = 208/479 (43%), Gaps = 29/479 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R + AG F A + D FI AI +GA A++V A++ P Sbjct: 30 HLHADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGFTGKLDASVTHAVP 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L + AS Y + +LA +TGT+GK+S + +V G +G Sbjct: 90 AL-----NELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH T +AY AK RLF + + R H Sbjct: 205 FTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAVINRDDAAGRRLLASTRGHARTIAYG 264 Query: 269 SVGYQGKFIHLKKVCAIHN------------KQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 G G A + + + D G F V N L Sbjct: 265 IEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDWGNADVEVQTLGLFNVSNLL 324 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILK 374 G+ +A + L L KL V GR + +G + +DYAHT ++LE L+ Sbjct: 325 AVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLE 384 Query: 375 NIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +R I + R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP I + Sbjct: 385 ALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSEDPLSIIEQ 444 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I G+ +R AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 445 IAAGMQDASKARRVEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 502 >gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] Length = 507 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 149/483 (30%), Positives = 224/483 (46%), Gaps = 22/483 (4%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + + V+ S+ ++ G ++ A+ G + G F A GA A++ A Sbjct: 27 PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139 + + P+LVV + R L A+ +YG ++ VTGT+GK+S + V+ + Sbjct: 83 VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G + IG T D+ TTP L L+ GV V +E SSH L R Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G++ G +TN G DH+D+H + YF AK +LF+ + ++ DD + + K Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317 + G + Q+ T+ LPG V NAL+ Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A L +A+G+D + VPGR E V + R VDYAH +N++E +L +R Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433 +T GR+I V G GGDRD+GKRP+MG +A AD+ +VTDDNPR+EDP IRAE++ Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435 Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 IE R AI A+ + DV+ V GKG E + GE D + Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLGKGQERGQEIG-GEVLPFDDRVELAA 494 Query: 492 ILG 494 L Sbjct: 495 ALR 497 >gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] Length = 508 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 131/508 (25%), Positives = 225/508 (44%), Gaps = 31/508 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++++ LI ++ + E +I ++ DSR + ++F A+ G +G FI Sbjct: 8 LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIES 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--IL 118 AI +G+ IV ++ D SN + VD N ++F+S FA Y + + I+ Sbjct: 64 AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKAL 174 VTGT GKSSV ++ + + G I + + R +TP + L Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVL 177 Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S + + V + +E++SHGLD RL I+ TN+ +H+++H T Q Y AK+ Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF II DD + M S+ + + K+ + Sbjct: 238 LFYSANFHGGFGIINMDDNHFSVFMN--SINRTYTYSLKNEKADFFISKINEQMGFTEFE 295 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGT 351 + L G F V N + A + + +D + ++ L + + GR + Sbjct: 296 FYHNKIKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQ-DIN 354 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + VDYAHT + + + + R+I VFG G+RD KR + G+IA + +D Sbjct: 355 FGQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSD 414 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + I+ D++PR ED +I +I GI +R AI AI + D++V Sbjct: 415 VIILCDEDPRGEDSMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLVVTL 474 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I + + + +I++I+ Sbjct: 475 GKGHESSIIYKD-KSIFWDEQAVIKDII 501 >gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris AB-18-032] gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris AB-18-032] Length = 497 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 155/499 (31%), Positives = 229/499 (45%), Gaps = 22/499 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + +L +L++ P + + V+ S + G ++ A+ G + G F+ A A Sbjct: 1 MTGIRLGDLAARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123 GA A++ +A + P LVV + R L AS +YG E ++ VTGT Sbjct: 61 AGAVAVLTDAAGA----ELAAGYGLPTLVVADPRAVLGTLASAVYGDPTEKLTVIGVTGT 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+S A V+ + +G ++ IG T D+ TTP L L+ +GV Sbjct: 117 AGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALERGV 176 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 T V +E SSH L R+ G++ G +TN G DH+D+H YF AK RLF+ Sbjct: 177 TAVVMEVSSHALAMGRVGGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDG------ 230 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + A + G + V Q+ T+ Sbjct: 231 RCAHEVLNHDDPALKALFKPATISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGLVLD 290 Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 LPG V NAL+A + +A G+D+A + VPGR E + G R VD Sbjct: 291 AGVALPGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLE-SVGVAGGVRGVVD 349 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++ +L +R ++SGR+I V G GGDRD+GKRP MG A AD+ +VTDDNPR Sbjct: 350 YAHKTDAVVAVLAALRELSSGRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDDNPR 409 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP IRAE++ G +E R AI A+ DV+ V GKGHE + Sbjct: 410 TEDPATIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKGHERGQEI 469 Query: 476 TNGEKKMSVDCDIIREILG 494 GE D + + L Sbjct: 470 A-GEVFPFDDVTELADALR 487 >gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] Length = 520 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 215/482 (44%), Gaps = 35/482 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R + AG F A D FI AI +GA A++V A++ P Sbjct: 30 HLHADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVP 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L + AS Y + +L +TGT+GK+S + +V G +G Sbjct: 90 AL-----NELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGT 144 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGTGLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH T AY AK RLF E A + D + + + + R + Sbjct: 205 FTNLTQDHLDYHGTFAAYETAKTRLFAW---PELRAAVINRDDAAGRRLLASTHGHARTI 261 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV---------------EGKDFDFLFPLPGEFQVY 313 + G +G A +T S + + G F V Sbjct: 262 AYGIEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVS 321 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEM 371 N L G+ +A + L L KL V GR E +G + +DYAHT ++LE Sbjct: 322 NLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVIDYAHTPDALEK 381 Query: 372 ILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ +R I + R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P I Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSENPLAI 441 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ +R AI AI ++DV+V+AGKGHE + G+K+ D Sbjct: 442 IEQIVAGMQDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSD 500 Query: 486 CD 487 D Sbjct: 501 QD 502 >gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] Length = 522 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 151/489 (30%), Positives = 216/489 (44%), Gaps = 33/489 (6%) Query: 33 VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +S D+R + G +F A V GN DG +I QAIA GA A+V + F Sbjct: 32 LSGDTRRLSRGDVFFAYVLGNDRLATDGRPYIAQAIAAGAGAVVYEADG----FDWPFGD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + A+ +G + +TGT+GK+S + ++ ++ Q +G Sbjct: 88 AVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITGTNGKTSCSQWLARVLQATGTPCAT 147 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T Q TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 148 IGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAGARAVAMEVSSHGLEQERVAGTHFS 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AYSK 254 TNL +DH+DYH + Y AK RLF + + + Sbjct: 208 VAVLTNLTQDHLDYHGSMAEYEAAKARLFRWDGLRTAVINRDDAMGQRLLAADAAAVVAP 267 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V++ + G +G ++ V A I + P+ G F V N Sbjct: 268 HVIEYGIDGPAAATVRGPRGAWLRATSVRATATGTAFHIDGSFGHAEMATPMIGAFNVSN 327 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLE 370 L G +A G+ + L L V GR E G VDYAHT ++LE Sbjct: 328 LLAVLGAALANGVAWDAAIAALRALAPVEGRMELFGAAGHDAAQAPLAVVDYAHTPDALE 387 Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +R + +GR+ VFGCGGDRD KRP+MG +A LAD ++T DNPRSEDP+ Sbjct: 388 QTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAERLADEVVLTSDNPRSEDPQD 447 Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I I G+ + +R AI A+ DV++VAGKGHE + G K+ Sbjct: 448 ILDAIADGMTERARGRQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEIQ-GRKRPFS 506 Query: 485 DCDIIREIL 493 D + +R L Sbjct: 507 DREHVRLAL 515 >gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 572 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 143/499 (28%), Positives = 229/499 (45%), Gaps = 22/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL ++L + ++ ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 66 LGELADRLGVEAAGTG--EVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAA 123 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ A + + + P+LV ++ R + A+ +YG+ L +TGTSGK++ Sbjct: 124 VLTDPAGAER----AAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTT 179 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G + IG + TTP L + + +GV V++ Sbjct: 180 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNF- 298 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306 DD Y + ++ + + G+ H + V T + +G+ PL Sbjct: 299 -DDEYGRRLLTESGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N L A G+D + + + + VPGR E V VDYAH + Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476 Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A ++ G E+G+ AI A+ D ++VAGKGHE + +G Sbjct: 477 AILAAMLSGAAEVPVHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHEQGQDI-HG 535 Query: 479 EKKMSVDCDIIREILGLIL 497 + D ++ + L Sbjct: 536 VVRAFDDRKVLHAAIERSL 554 >gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] Length = 489 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 136/493 (27%), Positives = 213/493 (43%), Gaps = 27/493 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L+ K + FP IN+V DSR + +FVA G D H FI Sbjct: 1 MKTSELLSK--IKAKKLYGTFPEH-----INKVVVDSRAADSESVFVASHGYTVDSHKFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P + QG IVV + +VV +T + +F + Sbjct: 54 PNVVRQGCRMIVVDHYIE--------GLDIGQVVVRDTLQAARIFTQHVMDFPSHKLTTY 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK+SVA+ + + + ++S +G + +TP I L + +++ Sbjct: 106 GVTGTNGKTSVATMIHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHA 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234 QG +++E SSHGL R DG+ + FTNL +DH+D+H T + Y K Sbjct: 166 VEQGAQSMAMEMSSHGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQL 225 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ A++ DD YSKE++ + Q I + + T+ Sbjct: 226 GNDFKQQKYAVVNGDDDYSKELIIASPREVITYGI--EQNTDIKATNIKESIHGIAFTLE 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + P G F +YN L A G + + E + L V GR E + N Sbjct: 284 TPDGNVEITCPYIGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNL- 342 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT + + ++ + G++I + G G+RD K P MG +A AD I Sbjct: 343 PIDLVIDYAHTPDGMNKLIDALEPFKRGKMIFLIGMAGERDLSKTPEMGAVACR-ADYVI 401 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNP ++DP K+ + G ++ +R E IR AI M D++V+A KG E Sbjct: 402 FTPDNPANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMSEPGDMVVLASKGREPY 461 Query: 473 HIVTNGEKKMSVD 485 I+ N K D Sbjct: 462 QIMENYIKVPHRD 474 >gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] Length = 486 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 129/513 (25%), Positives = 216/513 (42%), Gaps = 51/513 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKE 54 M L++L F ++ ++ ++ DSR ++ G++FVA++G Sbjct: 1 MTLEELFA-----------PFGLKAPPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPL 49 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 DGH FIP+A+A+GA A+V SL P L V + R+ L+ A +G+ Sbjct: 50 DGHDFIPEALAKGAIAVVGERELSLP---------VPYLRVGDAREALAHLARHFFGEPD 100 Query: 115 ENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIY 169 + L +TG+ GKS+ AS + + Q + + + TTP Sbjct: 101 RKLALLGITGSKGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQ 160 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + L +G+ +E SSH L R++G+ G F + D H A Sbjct: 161 VYGFLREAVERGLEAAVLEVSSHALALKRVEGLSYRIGVFVSFYPDD---HLDLHGTAEA 217 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 L+ + A++ + K ++ R H G + + + Sbjct: 218 YFAAKALLVERSHLAVLNTRLPHLKRLLPRPHLLFGP-------GGEVWGEGLREGEEGL 270 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + T+ + P+ G + + NAL A+ +A G+ VL+ L VPGR E V Sbjct: 271 RFTLHTPWGSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPGRMEVV 330 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 R+ +D+AHT SLE LK +R T GR+++V G G+RD +R +G++A L Sbjct: 331 QRK--PFRVVIDFAHTGKSLEEALKTLRATTRGRLLLVVGAAGERDPRRREDIGRVAARL 388 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD T+++ R+ED + I + + +R EAI A+ + D +++A Sbjct: 389 ADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVLLA 448 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE---ILGL 495 GKGHE + + E LGL Sbjct: 449 GKGHEHTLERGTLALPW-DEKAVALEGLKALGL 480 >gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759] gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759] Length = 540 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 134/541 (24%), Positives = 221/541 (40%), Gaps = 60/541 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+ + L ELI + I ++ DSR + +FV G +G +I Sbjct: 1 MRAECLFSGIRYELIKGS-------LDADICDIVDDSRQVSPNAVFVCRRGAVTNGRKYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI----------RSNTPILVVDNTRKFLSLFASRLY 110 AI++GA I+++ + + ++V+ + R + + + Sbjct: 54 GDAISRGAAGIIITDEVWDSEDVYDADSMSGSLGYYPDDFFVVVMHDKRYSIGRLCNNFW 113 Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSP 167 G ++ VTGT GK++V ++++ + G + IG +Q TTP Sbjct: 114 GYPSRELTVIGVTGTKGKTTVTYMMKKVLETCGCKTGLIGTIEVDDCSSQVQSVNTTPGV 173 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + L + S G +E SS G+ R+ G+ G FTN+ DHI + Sbjct: 174 VQLHRILHNMVSNGARCCVMEVSSQGIMLGRVSGVDFDIGIFTNISPDHIGK---NEHKT 230 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + ++ + + D + G G +++ Sbjct: 231 FEEYIRWKSTMFSMCRYAVINMDDVYAPCICNGIQVNGAKKCSGVIGYGMNIWSKELYDK 290 Query: 288 KQQV------------------------------TISVEGKDFDFLFPLPGEFQVYNALV 317 + + +G +PG F VYNAL Sbjct: 291 ISEHMPVYDIHFSLYIGDQLAMAYNGITPGTECECVMPDGDRVPIHIDMPGLFNVYNALA 350 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +G + V + LE + V GR E RG +Y+DYAH SLE +LK +R Sbjct: 351 VIAAGDVLGFPRSTVSKALEDICV-RGRME-CAAVYRGAYVYIDYAHNPVSLENVLKTLR 408 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 + G+I VFGCGG+R + +R MG ++ +AD+ IVT+DNPR EDPE I +I G+ Sbjct: 409 SYFGGKIFCVFGCGGNRAKSRRIGMGMVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLN 468 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +I +R +AIR I DV+++AGKGHET V G + + ++I +IL Sbjct: 469 AAGAEYIRIPDRKKAIRYGIVHAVAGDVVLLAGKGHETYQDVM-GHRTHMDERELIGQIL 527 Query: 494 G 494 Sbjct: 528 E 528 >gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia glumae BGR1] gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia glumae BGR1] Length = 515 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 141/476 (29%), Positives = 212/476 (44%), Gaps = 30/476 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +F+A DG + A+++GA A++V + Sbjct: 31 LHADTRSLRAGDVFLAY---AVDGADNRPHLANALSRGAAAVLVQPEGYAGIDALDPAVA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + + + VTGT+GK+S ++ I Sbjct: 88 ---LAVPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVI 144 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 GTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVNGTAFDV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+DYH+T +AY AK +LF + AII DDA ++ Sbjct: 205 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AIINRDDAAGGRLLATLAGRVRT 262 Query: 267 VLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V + + +V A ++ D D G F V N L Sbjct: 263 VAYGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLFNVSNLLAVL 322 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 + + L + +L V GR + +G VDYAHT ++LE L+ +R Sbjct: 323 ATLLVADLPFDAALAEMRRLESVNGRMQRLGGRIDHDEPLVVVDYAHTPDALEKTLEALR 382 Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE P I +I Sbjct: 383 PIAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLADRVVVTSDNPRSEAPLAIIEQIAS 442 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ G + +R AI A+ ++DV+++AGKGHE + G+K+ D D Sbjct: 443 GMHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRQFSDQD 497 >gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] Length = 975 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 146/469 (31%), Positives = 212/469 (45%), Gaps = 15/469 (3%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 ++DSR +Q G +FVA G D F+ QA+ A ++ + ++ IL Sbjct: 27 TADSRSLQPGEVFVAWPGAARDPRQFVAQAL----AAGAAAALVEAEGAQYFGFTDPRIL 82 Query: 94 VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 VD + A+ YG E +LAVTGT+GK+S A + Q +G IG Sbjct: 83 AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 Q TTP P+ L L+ L QG ++EASS GLD+HRL G + A +FT Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH AY AK LF + + I A S + + Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALFVWPGLQHAVLDIDDPYAASVLLADCRSRGQQVQTTA 262 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + V Q++T+ P+ G F + N LV A L G+D A Sbjct: 263 LIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDDA 322 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVV 387 + L + VPGR + +G +DYAHT ++L L+ +R + G++ V Sbjct: 323 AIAAALRTVRAVPGRMQMLGGIGAPL-AVIDYAHTPDALYKALQALRPVTAKRKGKLWCV 381 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FG GGDRD KRP+M + A AD ++T DNPRSE P I +++ G+ + + Sbjct: 382 FGAGGDRDARKRPLMAQAAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLIED 441 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R AI + DV+++AGKGHE + G K+ D R L Sbjct: 442 RAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMAL 489 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 31/394 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ + +DSR + G +FVA+ G + D H F+PQA A A +L Sbjct: 516 ADVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAA--------GARALLAEQGV 567 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + +T + L A + ++AVTG++GK++V + I Sbjct: 568 AACGLPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDR 627 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ ++ A+ L ++ AS + Sbjct: 628 RLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLA----------EPT 677 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N R+H ++ + +A + LP+ A+ ADDA + + +A Sbjct: 678 VALVNNAQREHQEFMHSVEAVAHENG-SVLAALPQTGVAVFPADDAQTAIWVAQAAGRRV 736 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++ + +V +Q + + L G NAL A Sbjct: 737 LRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNARNALAATAA 796 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTSNSLEMILKNIR 377 +A G + LE V GR R Y +S+ + + Sbjct: 797 ALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSYNANPDSVRAAIDVLA 856 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 + GR +++ G GD +G A Sbjct: 857 EL-PGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889 >gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] Length = 511 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 130/513 (25%), Positives = 214/513 (41%), Gaps = 32/513 (6%) Query: 1 MK--LQDLI-----YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53 MK L D + + + + L + +R+I VS DSR + G +F+ G Sbjct: 1 MKHLLADYLQMLAGHGLLSQTVETLGERLGESLQREITLVSCDSRKVIPGTLFIC-KGAG 59 Query: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 F+ A +GA + Y + P + V + R ++ AS Y + Sbjct: 60 FR-EDFLRMAKERGAAFYLSEKPYE--------GVDLPWIGVSDIRAAMAHSASFCYDRP 110 Query: 114 PE--NILAVTGTSGKSSVASFVQQIC-----QRSGLSSFQIGPTS-TISSFAQDNRLTTP 165 E ++ +TGT GKS+ A F++ I R G S I ++ +R+TTP Sbjct: 111 WEAFRLVGITGTKGKSTTAFFLKAIFDVYEKSRGGRPSGLISTILTEDGKESRPSRMTTP 170 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 PI L + + G+ +V++E SS L R+ ++ +F N+G DHI + Sbjct: 171 EPIELEEHFANAREAGLDYVTMEVSSQALKYDRVLDVQFDVAAFLNIGYDHISPIEHP-T 229 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 + + + + D + + S + ++ + Sbjct: 230 WEDYFASKLRIFSQCRTAVVHLGVDHSEEMLAAAQKARKVITFSETDERADVYGYGMKKQ 289 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + V G++ +++ +PG F V NAL A + GI ++ K VPGR Sbjct: 290 GRETHFKARVLGQEREYILGIPGFFNVSNALAAIAVAEHYGIPYD-CVKEGLKRARVPGR 348 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404 E + +DYAH S E + + GR IV +FG G + +R +G+ Sbjct: 349 MEEYTSADGKIVTIIDYAHNRLSFEKLFAAAKEEFPGRRIVALFGASGGKAINRRRDLGE 408 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 +A AD +T+D+P EDP +I EI I + +R EAIRTAI + Sbjct: 409 VAAANADYIYLTEDDPGREDPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPT 468 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +L++AGKGHE + NG +K D D R+ L Sbjct: 469 LLLLAGKGHEVMVRRANGYEKGPSDADCARKYL 501 >gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter sp. 1501(2011)] Length = 577 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 150/548 (27%), Positives = 243/548 (44%), Gaps = 66/548 (12%) Query: 9 KDFPELINQLS-IFPMQWRERKINEVSSDSRH----------IQAGWIFVAIVGNKE--- 54 K PE L I + ++ DSR + A FV + + + Sbjct: 27 KVLPEQAQTLQQILSQPGIDIAFSKFVLDSRQLDNEVNTAPSVAAPAAFVLLKSHTQPIE 86 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLF-------- 105 + A + A I+ S PI+ V N R L Sbjct: 87 KSQQYAQVAAEK-AAFILTEIDPQHLASSTQTAEYACPIIFVANLRDILGSLIQISLLPP 145 Query: 106 --------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG----LSSFQIGPTSTI 153 +S L + P ++AVTGT+GK++++ + Q+CQ S +S +G Sbjct: 146 ASLSSLTHSSDLQQQLP-QVIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTAGNG 204 Query: 154 S-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TT + + + L + +GV+ +++EASSHGLDQ RL + + +TNL Sbjct: 205 RLDSLVQASHTTGDALAVQRFLRQMHDEGVSILALEASSHGLDQQRLQAVLVTVAVYTNL 264 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 RDH+DYH + Y AK RLF+ + + A+I ADD ++ + + A +G +V Sbjct: 265 SRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAKVWLYS 324 Query: 272 YQGK-----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + + K+ ++ + PL G F V N L A Sbjct: 325 LRSEQGTINEIANDAYFVANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLAAVA 384 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF----------VGTNSRGGRIYVDYAHTSNSLE 370 +A+GI+ + + KL GR + GT G VDYAHT ++L Sbjct: 385 GVMALGIELEDLPALVTKLQGASGRMQRVNVNNDAIDDQGTVLNQGVFIVDYAHTPDALT 444 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L ++++ SG + +FGCGGDRD+GKRP+M + L +AD ++T DNPRSEDP +I Sbjct: 445 QVLTSLKSHCSGNLWAIFGCGGDRDKGKRPLMAQAGLAVADKVVLTSDNPRSEDPAQILE 504 Query: 431 EIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ G+ +R +AI+ A+E QD++V+AGKGHET + G + D Sbjct: 505 DMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQDIVVIAGKGHETYQEIK-GVRYDFDD 563 Query: 486 CDIIREIL 493 ++++ L Sbjct: 564 REVLQHAL 571 >gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 157/487 (32%), Positives = 246/487 (50%), Gaps = 24/487 (4%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + ++ I ++ ++ + IF A+ G G+ FI A+A GA I+ A Sbjct: 2 ESNNIIEIIKKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQA 61 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 I S + ++VV N + + LY K P+ ++AVTGT GK+SV ++ QQ+ Sbjct: 62 --------HITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQL 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHV 185 C +G + IG I++ N+ TT S I L L++ G+ V Sbjct: 114 CMLAGEQAASIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFV 173 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++EASSHGLDQ+RL IK A +FT+ RDH+DYH+T Y +AK++LF+E + AI Sbjct: 174 ALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAI 233 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + + + L Q I + V + N Q+V + D+ F Sbjct: 234 VNNNINELSIIQSKITDEFGLKLLSVEQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVL 293 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G + N L+A L + G DSA ++ L L + GR E + +VDYA T Sbjct: 294 VIGRVHITNILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKIQFG--NCYAFVDYALT 351 Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSE 423 N+L +L +RT+ GR+I +FG +RD +R MG +A L+D+ IVTD + +E Sbjct: 352 PNALATMLTELRTLNSKGRLITIFGGSENRDAIARRMQMGIVASKLSDLVIVTDQDSGNE 411 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 DP IR EI+ P IE NR EAI+ AI ++ D+L++AGKGHET ++ G Sbjct: 412 DPAAIRKEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVLK-GRIINY 470 Query: 484 VDCDIIR 490 D + ++ Sbjct: 471 NDMEQVK 477 >gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 477 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 129/495 (26%), Positives = 228/495 (46%), Gaps = 28/495 (5%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 F E++ ++ + E+ I V+++S+ ++ G+ FVAI GN EDGH +I AI GA Sbjct: 3 KFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIENGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 I+ + + ++ + V++ R L+ +++L + + ++VTG++GK Sbjct: 63 SLIIHTEDIAYKE-------GISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + V + + IG + I TTP + K ++ + + ++ Sbjct: 116 TTTSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYL 175 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E+SSHGLDQ R+ G+ + G FTNL ++H+DYH+T YF AK +L ++ Sbjct: 176 SLESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAK-----MILFDQAKHT 230 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D + K + + V +S E K +F+ Sbjct: 231 VANIDDPYGKKAKELYPNTITYGINNENADYRAENVVKKDG-----KVSYEVKGVEFILN 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +++VYN L A + +G V + ++K + V RFE N+ G I +D+AHT Sbjct: 286 TIADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFE-YMENNLGLNIIIDFAHT 344 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +I V+G GDR++ R GK D ++VT D+P+ + Sbjct: 345 --PFAYECLFKSVPQGHKIYAVYGINGDRNKEFRVSTGKACADNDVFSVVTTDDPKFDTV 402 Query: 426 EKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E I +II GI ++ +R +AI+ AI NK D + + GKG E + EK Sbjct: 403 ENISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKGEENFLKLKGNEKT 462 Query: 482 MSVDCDIIREILGLI 496 + + ++E+L I Sbjct: 463 PYSERETLKEVLESI 477 >gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 548 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 142/485 (29%), Positives = 221/485 (45%), Gaps = 22/485 (4%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + + V+ DSRH+ G ++ A+ G + G F Q ++ Sbjct: 46 GAGPADPSGADPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQ----------ARAS 95 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134 + S P LVV + R L A+ L+ + + VTGT+GK+S + Sbjct: 96 GAAAALSDRPLPGLPTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTGTNGKTSTTHLLD 155 Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + +G + G +++ + TTP L + L+ L QG T +VE SSHG Sbjct: 156 AGLRSAGHRTGMISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHG 215 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L HR+DG + A FTNLGRDH+D H Q++YF AK LF + + A++ DDA+ Sbjct: 216 LALHRVDGTRFRAAVFTNLGRDHLDLHGDQESYFAAKASLFAP--HRCALAVVNVDDAHG 273 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + + + G + +V A ++ + G D L G QV Sbjct: 274 RRLAAQVRVPVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVD 333 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A A G++ VL +E L V GR + + + VDYAH + +L Sbjct: 334 NALGAVAALHAGGLNVEDVLRGMEDLTAVSGRLQRI-DEGQPFLALVDYAHNVAAQRRLL 392 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--- 430 +RT+T GR++VV G G+RD GKR +G+ A L D+ IVTD++P +DP +R Sbjct: 393 PFLRTLTGGRLVVVLGATGERDPGKRGPLGRTAAQLGDVVIVTDESPHDDDPAALREAVA 452 Query: 431 --EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + +R AIR A+ + + DV+VV+G+GH +V G + D Sbjct: 453 GGARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSGRGH-DGQLVAGGRTRAFDDGAR 511 Query: 489 IREIL 493 +R L Sbjct: 512 LRAAL 516 >gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia sp. P1] Length = 534 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 222/488 (45%), Gaps = 26/488 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + + ++ G +F A+ G + G F QAIA GA A++ + + D Sbjct: 49 HVVTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGA--DRPEIRH 106 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S P+LV R+ L ++ +YG+ +L VTGTSGK++V ++ +G S+ Sbjct: 107 SRLPVLVHPAPREVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTG 166 Query: 146 QIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G T A + TTP L + + GVT V++E SSH L R+ Sbjct: 167 LLGTVRTRVQVPGEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRV 226 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEV 256 G + G+FTNL +DH+D+H T YF AK RLF A DD + +++ Sbjct: 227 GGSRFAVGAFTNLSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQL 286 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYN 314 R +A ++ + A + Q +V LPG + V N Sbjct: 287 ASRRPDAVTVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVAN 346 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 ALVA A GI + + +L V PGR + V VDYAH ++ +L Sbjct: 347 ALVALACLDADGIPPEVAAQGFARLSV-PGRMQRVDAGQ-PWLAVVDYAHKPAAVAALLD 404 Query: 375 NIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R R+I V GCGGDRD GKRP+MG A +D +VTDDNPR E+P IR + Sbjct: 405 ALRAQIHPHARVITVLGCGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPATIRRAM 464 Query: 433 IHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 + G IE G+R AI A+ D +V+AGKGHET V +G K D Sbjct: 465 LEGAMHEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKGHETGQEV-HGVKYPFDDA 523 Query: 487 DIIREILG 494 D + + Sbjct: 524 DELVNAIR 531 >gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 500 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 151/493 (30%), Positives = 229/493 (46%), Gaps = 28/493 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ +S + G +F A+ G + G F A AI+ + Sbjct: 2 IGDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAAILTDAEGKRILN 58 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 A P+LVV++ R L ++ +Y + IL VTGTSGK++ + ++ + Sbjct: 59 DAG--EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHA 116 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S IG T T + LTTP L + + + S+GVTHV +E SSH L R+ Sbjct: 117 GYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRV 176 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G + G FTNL +DH+D+H T + YF AK LF+ + I DD + + + +R Sbjct: 177 QGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVI-CVDDEWGRRMAQR 235 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQV 312 A +S QG + F+F P+PG F + Sbjct: 236 AAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNI 295 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA +A G+ +IGI+ + LE +EK+ V PGR E V VDYAH ++ + Sbjct: 296 ANAALATGMAASIGIEPQVFLEGVEKVAV-PGRMERVDRGQ-DFVAVVDYAHKPAAIAAV 353 Query: 373 LKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L+ +R ++GRI +V G GGDRD KRP+MG A AD+ +VTDDNPR+EDP IR Sbjct: 354 LETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIR 413 Query: 430 AEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 A ++ G E G+R +AI + D ++V GKGHE ++ + Sbjct: 414 AAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLIGD-TVHHF 472 Query: 484 VDCDIIREILGLI 496 D + + L + Sbjct: 473 DDREEMARALEAV 485 >gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha H16] gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Ralstonia eutropha H16] Length = 520 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 149/487 (30%), Positives = 215/487 (44%), Gaps = 31/487 (6%) Query: 33 VSSDSRHIQAGWIFVAIV-GNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ D+R + G +F A V GN DG L+I QAIA GA AIV + F Sbjct: 32 LTGDTRRLARGDVFFAYVLGNARLATDGRLYIAQAIAAGAGAIVYEADG----FDWPFSD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + + A+ +G + +TGT+GK+S + ++ ++ Q +G Sbjct: 88 VVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITGTNGKTSCSQWLARVLQAAGTPCAT 147 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T Q TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 148 IGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHFS 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AYSK 254 TNL +DH+DYH + Y AK LF + + + Sbjct: 208 VAVLTNLTQDHLDYHGSMAEYEAAKESLFRWDGLRTAVVNRDDAMGQRLLAADAAAIGAP 267 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V++ + +G+++ V A I + P+ G F V N Sbjct: 268 HVIEYGIDGPGAATVRRPRGEWLRATNVRATPTGTAFHIDGSFGSAEMATPMIGAFNVSN 327 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372 L G +A G+ + L L V GR E G VDYAHT ++L Sbjct: 328 LLAVLGAALANGVAWDAAIAALRALTPVEGRMELFGAAGGPDAPLAVVDYAHTPDALAQT 387 Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L +R + +GR+ VFGCGGDRD KRP+MG +A AD I+T DNPRSEDP+ I Sbjct: 388 LAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAEREADEVILTSDNPRSEDPQDIL 447 Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 I G+ + +R AI A+ DV++VAGKGHE + G K+ D Sbjct: 448 DAIADGMAVRARARQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEIQ-GRKRPFSDR 506 Query: 487 DIIREIL 493 + +R L Sbjct: 507 EHVRLAL 513 >gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] Length = 508 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 131/508 (25%), Positives = 225/508 (44%), Gaps = 31/508 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++++ LI ++ + E +I ++ DSR + ++F A+ G +G FI Sbjct: 8 LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIES 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--IL 118 AI +G+ IV ++ D SN + VD N ++F+S FA Y + + I+ Sbjct: 64 AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKAL 174 VTGT GKSSV ++ + + G I + + R +TP + L Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVL 177 Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S + + V + +E++SHGLD RL I+ TN+ +H+++H T Q Y AK+ Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF II DD + M S+ + + K+ + Sbjct: 238 LFYSANSHGGFGIINMDDNHFSVFMN--SINRTYTYSLKNEKADFFISKINEQMGFTEFE 295 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGT 351 + L G F V N + A + + +D + ++ L + + GR + Sbjct: 296 FYHNKTKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQ-DIN 354 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + VDYAHT + + + + R+I VFG G+RD KR + G+IA + +D Sbjct: 355 FGQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSD 414 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + I+ D++PR ED +I +I GI +R AI AI + D++V Sbjct: 415 VIILCDEDPRGEDSMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLVVTL 474 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ I + + + +I++I+ Sbjct: 475 GKGHESSIIYKD-KSIFWDEQAVIKDII 501 >gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate ligase [Streptomyces venezuelae ATCC 10712] Length = 565 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 147/497 (29%), Positives = 231/497 (46%), Gaps = 23/497 (4%) Query: 11 FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L QL + P R +I+ ++ DSR ++ G ++ A+ G + G F+ QA GA Sbjct: 56 LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 AI+ + + + P+LVV+N R + A+ +YG+ + + +TGTSGK+ Sbjct: 116 AILTDPTGAER----AAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKT 171 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + A V+ + +G + +G + TTP L + + +GV V+ Sbjct: 172 TTAYLVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVA 231 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+DG F NL +H+++H + YF AK LF + + Sbjct: 232 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLFTPERSRLGVVNL 291 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305 DDAY + ++ A + G + + + T + G+ P Sbjct: 292 --DDAYGRRLVGEATVPVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERISATAP 349 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG F V N L A A G+D E + + VPGR E V + VDYAH Sbjct: 350 LPGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERV-EAGQPYLAVVDYAHK 408 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 409 TDAVESVLRSLREVTEGRLHVVIGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDP 468 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVT 476 I ++ G + R E + A+ D ++VAGKGHE + Sbjct: 469 LTILTAMLAGAAEVPAEE-RGEVLVLADRAAAIAAAVARARPGDTVLVAGKGHEQGQEIA 527 Query: 477 NGEKKMSVDCDIIREIL 493 G + D ++RE + Sbjct: 528 -GVVRPFDDRQVLREAI 543 >gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] Length = 482 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 224/502 (44%), Gaps = 38/502 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF----IPQAI 64 K EL+ L + ++ I+ +S DSR + +++A G + F I Sbjct: 2 KTTHELLTALGLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN--- 58 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 AI Y A + V+ + +S A Y HP L +TG + Sbjct: 59 ---CAAIFYEPPYQNPPPHA--------ITVERLSEKVSAIADLFYD-HPAQKLWITGVT 106 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVT 183 G +S V I Q +G + +G + Q TTP I + L++ +QG Sbjct: 107 GTDGKSSLVHFIAQATG--AAMLGTIGYGNLNALQPASHTTPDAITTQQQLAHFVAQGNQ 164 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSH L QHR+ + + FTNL RDH+DYH + YF AK +LF + Sbjct: 165 AVAMEISSHALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFAFPIKH--- 221 Query: 244 AIIYADDAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 A+I DD + + ++ + + C N T+++ Sbjct: 222 AVINIDDPHGRRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAI 281 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + L F + N L A A G A + E L +LH V GR E + +++ Sbjct: 282 DDETIAVETHLLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQ- 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAHT+ ++E +L IR SG++ ++FGCGG+RD+GKR +M + A AD IV Sbjct: 341 ALAIVDYAHTAGAIESVLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIV 400 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 TDDNPR+EDP I A+++ G R +AI A+ L+ D +++ GKGHE Sbjct: 401 TDDNPRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITGKGHEDY 460 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ K D +I+ + Sbjct: 461 QIIGT-TKYPFSDQAVIKAWIN 481 >gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] Length = 524 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 224/473 (47%), Gaps = 22/473 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR +Q G ++VA+ G+ G F +A A GA AI+ +A + + Sbjct: 36 ITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAG----RERAVATG 91 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LVV + R L A+ +YG I+ VTGTSGKS+ + + +G + I Sbjct: 92 LPVLVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLI 151 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G RLTTP L + + QGVT ++E SSH L R+ I Sbjct: 152 GGVEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYDV 211 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H+ YF AK RLF + DD Y +E+ +RA Sbjct: 212 AIFTNLSQDHLDFHRDLDDYFAAKARLFTPDHSRLGVVN--IDDRYGRELAERAKIPITT 269 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325 G + V + + G + D LPG F V NAL A + Sbjct: 270 FSPSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVEA 329 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383 G+ + + VPGR E V +++VDYAH ++E +L+++R + R Sbjct: 330 GVPVPAAVAGIGMTTCVPGRMERVP-GPGDIQVFVDYAHKPAAVESVLRSLRAVMGSGRR 388 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +++V GCGGDRD+GKRP+MG+ A LAD AI T+DNPRSEDP I A ++ G Sbjct: 389 LVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAILAAMLSGALRVPAAE 448 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I + +R AI AI DV++VAGKGHE V G D ++ Sbjct: 449 RAHVIVEPDRAAAIDLAISTARSGDVVLVAGKGHEQGQYVG-GRVIPFDDREV 500 >gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 529 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 144/486 (29%), Positives = 230/486 (47%), Gaps = 26/486 (5%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P +I +V DSR + G ++V + G + G AQ A V+ + Sbjct: 35 LPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHG----ANFAAQAAALGAVALLTDAE 90 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + PI+V + R ++ A+R++G + ++ +TGT+GK++ A ++ Sbjct: 91 GAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCAFLIEGALI 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 +G IG +TTP L + + G + +E SSH L Sbjct: 151 AAGHRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIVMEVSSHAL 210 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 R++G+ +FTNLGRDH+D+H+TQ+AYF AK +LF S A+I DD + + Sbjct: 211 ALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRP--TMTSRAVINGDDPWGR 268 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311 +++RA AG + + + + + + ++ G+ F LPG++ Sbjct: 269 ILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAFDIALPGQYN 328 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA + G++ + LEK V PGR + V R+YVD+AHT ++E Sbjct: 329 VANAATTIAVLAQAGVNLDRAVPGLEKALV-PGRMQRVDLGPDSPRVYVDFAHTPQAVES 387 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L + GR +VV G GGDRD+ KR MG A AD+ +VTDDNPR+EDP IRAE Sbjct: 388 ALSAL----PGRTLVVLGAGGDRDEAKRGPMGVAAARHADVVVVTDDNPRTEDPATIRAE 443 Query: 432 IIHG---IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 ++ G +P +R AI A+ M + D + + GKGHET + NG D Sbjct: 444 VLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAVAILGKGHETTQEI-NGVLHPFNDV 502 Query: 487 DIIREI 492 ++++ Sbjct: 503 TVVQQA 508 >gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. JLS] gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS] Length = 508 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 151/508 (29%), Positives = 221/508 (43%), Gaps = 19/508 (3%) Query: 1 MKLQDL-----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 MKL+ E + + + ++ V+ + G +F A+ G+ Sbjct: 3 MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G F+ A+A GA A++ +A ++ + + P+LV + R L AS +YG + Sbjct: 63 GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172 ++ VTGTSGK++ V+ + +G + IG Q + LTTP L Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + QGV V +E SSH L R+DG+ AG FTNL RDH+D+H T + YF+AK Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF+ + + D + M V + G + Q+ Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAVTVSASGRPADWRAEDVRAVEAGAQEFV 299 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L + A + S + VPGR E V Sbjct: 300 AVDPAGVHHGLRIALPGHYNVANCLLAAALLDAVDVSPEQAAPGLRTATVPGRLEAVDRG 359 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAH +L +L+ +R +GRI VVFG GG+RD GKR MG++A +LAD+ Sbjct: 360 Q-DFLALVDYAHKPGALRAVLETLRGQGTGRIAVVFGAGGNRDAGKREPMGRVAAELADL 418 Query: 413 AIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +VTDDNPR EDP IR A G +E G+R EAI A+ DV++VAG Sbjct: 419 VVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEVGDRREAIAHAVRWARSGDVVLVAG 478 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHET G D + E+L Sbjct: 479 KGHETGQT-AAGRTHPFDDRVELAELLE 505 >gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii ATCC 33806] gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii ATCC 33806] Length = 497 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 140/480 (29%), Positives = 211/480 (43%), Gaps = 15/480 (3%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + I EV +S + AG +F A+ G + G A A AI+ A Sbjct: 21 AEQAQVPITEVGLNSAELPAGALFAAVPGTRVHGA---RFAADTAAAAILTDEAG--WGL 75 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 + P+LVVD+ R L + A+ +YG ++ +TGTSGK++ + ++ + Sbjct: 76 LSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGKTTTSYMLEAGLLAA 135 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G IG T T + LTTP L + ++GVTHV +E SSH L R+ Sbjct: 136 GYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRV 195 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK 258 G+K FTNL +DH+D+H T YF+AK F P + A++ DD + +++ Sbjct: 196 LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWGEKMAS 255 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + + G G + Q+ ++ Sbjct: 256 VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSVVAATVPLPGRFNVANAAL 315 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A L VPGR E V VDYAH +++ +L +R Sbjct: 316 ALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQ-DFLAVVDYAHKPAAIKAVLATVRG 374 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 +GRI +V G GGDRD KRPIMG A AD +VTDDNPR+EDP IRA+++ G Sbjct: 375 QITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAA 434 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R AIR + D +++AGKGHE ++ +G D + +R L Sbjct: 435 GSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGVTHHFDDREELRAALE 493 >gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] Length = 561 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 139/497 (27%), Positives = 227/497 (45%), Gaps = 22/497 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +L + E + ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 62 LGELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAA 121 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ A + + + P+LV +N R + A+ +YG E + +TGTSGK++ Sbjct: 122 VLTDPAGADR----AAATGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTT 177 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + +G ++ +G T + TTP L + + +GV V++ Sbjct: 178 TVYLMEGGLRAAGRATGLVGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAM 237 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF + + Sbjct: 238 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPARSRRGVVNL- 296 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306 DDAY + + A + G+ + V +T+ G PL Sbjct: 297 -DDAYGRRLAAEATVPVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAPL 355 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N + A G+D + + + VPGR E V + VDYAH + Sbjct: 356 PGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERV-DEGQPYLAVVDYAHKT 414 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++++ +L+++R +T GR+ +V GCGGDRD+ KR MG A LAD A++T DNPRSEDP Sbjct: 415 DAVDSVLRSLRKVTEGRLHIVLGCGGDRDETKRGPMGAAAARLADTAVLTSDNPRSEDPL 474 Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I A ++ G R + + A+ D +++AGKGHE + Sbjct: 475 AILAAMLAGAAEV-PAHERGQVLVDADRAAAVAAAVARAEPGDTVLIAGKGHEQGQDIA- 532 Query: 478 GEKKMSVDCDIIREILG 494 G + D ++RE + Sbjct: 533 GVVRPFDDRQVLREAIR 549 >gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus sativus] Length = 871 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 127/516 (24%), Positives = 235/516 (45%), Gaps = 44/516 (8%) Query: 11 FPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF--IPQAIA 65 EL+++ + P+ + +I + DSR + AG +FV DG + +A Sbjct: 343 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCC-----DGGDDSVLSEADK 397 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 +GA A+V S ++D +++V++T L+ AS Y +++ + VTGT Sbjct: 398 RGAVAVVASKEIDIEDTLGCRA----LVIVEDTEAVLAALASSFYRHPSKDMAVIGVTGT 453 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 +GK++ ++ + + G+ + S D+ T+P + + ++ + G Sbjct: 454 NGKTTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNG 513 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +EAS L + D + FTNL R+ + T + Y +A+ +LF ++ E Sbjct: 514 TEALVMEASPQELASGKCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPE 573 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D + + N ++ +H K + QV ++ Sbjct: 574 RHRKVVNIDDPNAAFFVQQGNPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQGI 633 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G +YN L A + IA+G ++ +E++ VPGR E + + + Sbjct: 634 LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQAFGVI 692 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VD+A+T + L +L ++R + RII V GC G+ ++GKRP+M KIA + +D+ ++T DN Sbjct: 693 VDHANTPDGLSRLLDSVRELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTSDN 752 Query: 420 PRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAIEMLN 457 P +EDP I +++ GI ++ + + R A+R A+ M Sbjct: 753 PGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGE 812 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D++VVAGKGHE + +K+ D + RE L Sbjct: 813 EGDMVVVAGKGHEAYQ-LEGDKKEFYDDREECREAL 847 >gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 506 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 124/485 (25%), Positives = 226/485 (46%), Gaps = 29/485 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ V+ DSR +Q FV I G K DGH F+ AI GA A++ + + + + Sbjct: 21 KRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGA-AVLAGESAEVLEKAGRK 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V++ R FL+ + Y + EN + VTGT+GK++V ++V+ + G + Sbjct: 80 YPDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPT 139 Query: 145 FQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T IS + + TTP L +G +E SS Q R++ Sbjct: 140 GSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVE 199 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKR 259 GI+ TNL +H+++H+T + Y AK++LF++ A++ DD+ K+++K Sbjct: 200 GIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ----AKKAVVNIDDSGMAKDILKI 255 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + I ++ + + + + P+ G++ V N L A Sbjct: 256 HSGDVLTYSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANILAAV 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + G +L L + GRFE + T +I +DYAHT +L+ +L+ ++ + Sbjct: 316 CTALHSGYSIHQILLALTSIEGPEGRFELL-TEYGNRKIMLDYAHTPAALDNLLREVKKL 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436 R+IV+ G RD+ K P+M + AD +V+ D+P DP++I + ++ G Sbjct: 375 EYNRLIVLITGIGLRDKSKMPLMAETVEGRADEIVVSVDHPDFNDPDEIISNVLAGFSNP 434 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVA-----GKGHETVHIVTNGEKKMSVDCDII 489 + R EA+ +A+ + N+ D++++ G IV G++ D D+I Sbjct: 435 SADNIYTERTRAEAVLSALALSNENDLVLLTSGCING-----AQIVE-GKEIPHSDKDLI 488 Query: 490 REILG 494 + Sbjct: 489 KSYFN 493 >gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium matruchotii ATCC 14266] gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium matruchotii ATCC 14266] Length = 497 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 140/480 (29%), Positives = 211/480 (43%), Gaps = 15/480 (3%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + I EV +S + AG +F A+ G + G A A AI+ A Sbjct: 21 AEQAQVPITEVGLNSAELPAGALFAAVPGTRVHGA---RFAADTAAAAILTDEAG--WGL 75 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 + P+LVVD+ R L + A+ +YG ++ +TGTSGK++ + ++ + Sbjct: 76 LSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGKTTTSYMLEAGLLAA 135 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G IG T T + LTTP L + ++GVTHV +E SSH L R+ Sbjct: 136 GYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRV 195 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK 258 G+K FTNL +DH+D+H T YF+AK F P + A++ DD + +++ Sbjct: 196 LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWGEKMAS 255 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + + G G + Q+ ++ Sbjct: 256 VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAVVAATVPLPGRFNVANAAL 315 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A L VPGR E V VDYAH +++ +L +R Sbjct: 316 ALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQ-DFLAVVDYAHKPAAIKAVLATVRG 374 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 +GRI +V G GGDRD KRPIMG A AD +VTDDNPR+EDP IRA+++ G Sbjct: 375 QITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAA 434 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R AIR + D +++AGKGHE ++ +G D + +R L Sbjct: 435 GSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGVMHHFDDREELRAALE 493 >gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desmospora sp. 8437] Length = 399 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 192/394 (48%), Gaps = 17/394 (4%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLA 171 H N++AVTGT+GK++V ++ I + G + IG + + TTP + L Sbjct: 6 HDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAVELQ 65 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + + +G TH +EASSH L R G + FTNL +DH+DYH T Y AK Sbjct: 66 RGFRKMVDRGCTHAVIEASSHALHLGRTRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKG 125 Query: 232 -------RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 ++ + + A++ DD + M+ + + + Sbjct: 126 ILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYMETTSAQVITYGV--EHPADVRGENIRF 183 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + T++ D L G+F VYNAL AA + + GI + E L ++ VPG Sbjct: 184 YSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKGVPG 243 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V + VDYAHT +SLE +L +R T G II V GCGGDRD+GKRP M + Sbjct: 244 RLEAVDAGQ-PFPVLVDYAHTPDSLENVLTTVRGFTKGNIICVVGCGGDRDRGKRPQMAR 302 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQ 459 IA + ++ ++T DNPR+EDP +I +++ G+ +R EAI A+ Sbjct: 303 IAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAEAIGYAVRHAQAD 362 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV+++AGKGHET + NG + D ++ R + Sbjct: 363 DVVLIAGKGHETYQEI-NGVRHDFDDREVARTAI 395 >gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Cardiobacterium hominis ATCC 15826] gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Cardiobacterium hominis ATCC 15826] Length = 483 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 141/488 (28%), Positives = 211/488 (43%), Gaps = 24/488 (4%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L + L +R I +++DSR + +++A G F AI Sbjct: 5 KKLNDLLKGLTAATADRDIAAIATDSRALTPQTLWLAARGISHHALDFYNP--ELHPAAI 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 Y+ A + + L A+R Y HP L + G +G +S Sbjct: 63 AYEPPYANPPADA--------IACEQLGAHLGEIAARFYD-HPARALKLIGVTGTDGKSS 113 Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 V + Q +G + +G + TTP P+ + + L+ G+ V++E S Sbjct: 114 LVHFLAQATGGA--MLGTIGYGKLDALEPASHTTPDPLRVQQYLARFRDAGIETVAMEVS 171 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AI 245 SH L Q R+ ++ G FTNL RDH+DYH+ + YF AK LF LP Sbjct: 172 SHALAQGRVAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLFARPLPVAVINIDDAHG 231 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D R + + + + + + T+ E + Sbjct: 232 RRLLDENRVHPKTRVIAVSSQNHAHPRAALTLRARDIVLSPDGIAYTLETEAEQVAIQSG 291 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L F V N L A +A+G A + L LH VPGR E +G + G +DYAHT Sbjct: 292 LLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRAERIGLGN-GAAAIIDYAHT 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L IL+ +R G++ VFGCGGDRD+GKRP+M + A AD ++TDDNPR+E+P Sbjct: 351 PAALANILQGVRAHVPGKLWCVFGCGGDRDRGKRPLMAQAAEQYADAVVITDDNPRTENP 410 Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I A+ + G+ K R EAIR + L D +V+AGKGHE I+ K Sbjct: 411 ADIIADSLRGMGHREKAWIKRPREEAIRFVLPQLEAGDAVVIAGKGHEDYQILGT-TKHH 469 Query: 483 SVDCDIIR 490 D + +R Sbjct: 470 YSDQETVR 477 >gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HIMB114] gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HIMB114] Length = 460 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 140/494 (28%), Positives = 246/494 (49%), Gaps = 37/494 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++++I ++F +DSR ++ +F + N + + F+ Sbjct: 1 MKIKEIINRNF----------------------CTDSRLLKRNDVFFDFLSNSKKINPFL 38 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 I + I S + ++ ++ N R + Y K P+NI AV Sbjct: 39 KSIIKKKPSLIFSSIKVNYRNS----------VISKNIRNLYLSLIKKKYKKIPKNIFAV 88 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVA+F Q+ + IG + + N LTTPS + + L++++ Sbjct: 89 TGTNGKTSVANFFYQLHILNKKPCANIGTLGYFYNKKRKKNNLTTPSNLDIYNFLNFINK 148 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + V +EASSHGLDQ RL+G+K FTN +DH+DYH++ +AY N+K++LF + L Sbjct: 149 KKIRTVILEASSHGLDQDRLNGLKFKGVVFTNFSQDHLDYHKSMKAYLNSKLKLFRQNLK 208 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K+ + D+ + + + + + + V ++K + ++ + Sbjct: 209 KKGNIV-CNDNIKKILIKNKISKISFKYVLDNKIKYPVKIINVKKNNSKTLIKLNFKNNI 267 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F L G+FQ+ N + L ++ G+ + + LEK+ + GR + I Sbjct: 268 YTFNINLIGQFQIENLYQSIILALSSGLKIKEIFKVLEKVKPIEGRLNIIKNK--KKTIC 325 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAHT + L+ +L+ ++ + ++ +VFGCGG+RD KR MG+IA L + I+T+DN Sbjct: 326 IDYAHTPDGLKKVLETLKNHYNKKVNIVFGCGGNRDTDKRKKMGQIANKLCNKVILTNDN 385 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR EDP+ I +I + NR AI+ AI++ +++VL++AGKGHE I N Sbjct: 386 PREEDPKNITKQIFKSVKKAEVIHNRKLAIKKAIKITKEKEVLLIAGKGHENYQIFKN-R 444 Query: 480 KKMSVDCDIIREIL 493 D D+ ++ L Sbjct: 445 IIYFSDFDVAKKNL 458 >gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] Length = 481 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 127/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR ++AG +F A G ++ Sbjct: 9 DILKKDSLFREIIDQ-GHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AITQGLGWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +H+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ D V+K ++ A ++ + Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVENQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GKKEDYPGDAAIAERYL 481 >gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia dioxanivorans CB1190] gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia dioxanivorans CB1190] Length = 501 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 150/476 (31%), Positives = 226/476 (47%), Gaps = 15/476 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + + + ++ G +F A+ G++ G F A+A GA AI+ A + ++ A Sbjct: 25 RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAAREAVAQAA 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+LV + R+ L A+R+YG ++ VTGTSGK++V ++ G ++ Sbjct: 85 --VPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATG 142 Query: 146 QIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G T+ I + TTP L + ++ +GVT V++E SSH L R+ G + Sbjct: 143 LLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRF 202 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +FTNL +DH+D+H+ YF AK LF+ + + D + H Sbjct: 203 SVAAFTNLSQDHLDFHRDMDDYFEAKALLFDPSRQGAARRRVVCVDDEWGRRLADRHPDA 262 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V + G + Q + G LPG + V NALVA A Sbjct: 263 VTVATTG-PADWTAESVHQDDDGTQSFVAARPGGTVPVRLRLPGRYNVANALVALACLDA 321 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ + + L +L V PGR + V + VDYAH ++ +L +R GRI Sbjct: 322 AGVPAEVAAPRLAELAV-PGRMQRVDAGQ-DFLVVVDYAHKPAAVGALLAALRGQVGGRI 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------G 438 + V GCGGDRD+GKRP+MG IA +D+ +VTDDNPR+EDP IR + G Sbjct: 380 VTVLGCGGDRDRGKRPLMGAIAAAGSDLLVVTDDNPRTEDPAAIRRAVREGAEAEPRRGE 439 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +E G+R AI A+ D +VVAGKGHE + +G K D D +R L Sbjct: 440 IVEIGDRRAAIAAAVAAARPGDAVVVAGKGHEKGQEI-DGVKHPFDDVDEVRAALR 494 >gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium amycolatum SK46] gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium amycolatum SK46] Length = 524 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 143/485 (29%), Positives = 216/485 (44%), Gaps = 37/485 (7%) Query: 39 HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98 + G +F A+ G + G + Q+ A A++ A P+LVVD+ Sbjct: 38 DVPEGGMFAAVPGTRTHGARYAQQSA---ATAVLTDEEGLKILREAGETR--PVLVVDDV 92 Query: 99 RKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SS 155 R + A+ +Y + I+ VTGTSGK++ ++ +G S+ IG T T + Sbjct: 93 RAVMGHVAAEIYDHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRING 152 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 A + LTTP L + + S+GVTHV +E SSH L R+DG+ G F NL +D Sbjct: 153 RAVPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGRVDGVSFDVGCFLNLSQD 212 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKR--------------A 260 H+D+H+T + YF AK +LF+ P A++ DD + + Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 H + + ++ A + Q V ++ D + A Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + + VPGR E + VDYAH ++ +L +R T Sbjct: 333 AVLDAVGHAKDAAKSGLAQVRVPGRMERIDRGQ-DFLAVVDYAHKPAAVAEVLATLRAQT 391 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR++VV G GGDRD KRPIMG A AD+ I+TDDNPRSE P +IRA ++ G + Sbjct: 392 EGRVLVVVGAGGDRDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAKEAV 451 Query: 441 ------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 E G+R +AIR +E+ + D +VVAGKGHET + G D + Sbjct: 452 ASGKASSDTVVEEIGDRGQAIRRVVELAHSGDSIVVAGKGHETGQDIG-GVIHPFDDREQ 510 Query: 489 IREIL 493 + E L Sbjct: 511 LAEAL 515 >gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] Length = 572 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 132/518 (25%), Positives = 223/518 (43%), Gaps = 43/518 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q E + +S DSR ++ ++VA+ G K G F +A+ A AI+ Sbjct: 42 EALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101 Query: 73 VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +A + A + +LV D+ R + A+ +YG L +G + + Sbjct: 102 TDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYAVTGTNGKTT 161 Query: 132 FVQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + IG + + + LTTP +++ L+ + +GV+H + Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGERGVSHAA 221 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH +D HR+DG+ FTNL +DH+D H T Q YF++K +LF + A+I Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPERTEC--AVI 279 Query: 247 YADDAYSKEVMKR---------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ADD + +++++ + G + + + V + Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPG 344 T++ D + A L + IG + L +VPG Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTALTPIVPG 399 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R + + VD+AH + L L+ + GR+I+VFG G+RD KRP+MG+ Sbjct: 400 RMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMGE 456 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIE 454 IA ADI IVTDD+P EDP IR ++ G +G R AI AIE Sbjct: 457 IAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAIE 516 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + + +D +++AG+GHET V + ++ + + + Sbjct: 517 LADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554 >gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] Length = 494 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 128/467 (27%), Positives = 207/467 (44%), Gaps = 24/467 (5%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 SR IFVA G D H F I QG + IVV+ ++ ++V Sbjct: 30 SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKG-------EVTQVIVP 82 Query: 97 NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI- 153 +T + S+ A L+ + VTGT+GK+S+A+ + I + +S +G Sbjct: 83 DTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQI 142 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + TTP + L K + +++E SSHGL RL G++ F+NL Sbjct: 143 NEEKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVAVFSNLT 202 Query: 214 RDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +DH+D+H T +AY +AK E L KE ++ DD +SK + Sbjct: 203 QDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLETVTPYEILTYGID 262 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + Q + + P G+F + N + A + GID Sbjct: 263 NEAQFM--AQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNLMAAMIAVWSKGIDFK 320 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 ++E ++ L V GR E + + + +DYAHT++ + ++ ++ ++I + G Sbjct: 321 DIVEVVKSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGM 379 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEA 448 G+RD K P MG +A AD I T DNP +DP+ + AE+ G +IE +R E Sbjct: 380 AGERDLTKTPEMGAVACR-ADYVIFTPDNPADDDPKMLTAELAKGATHNNYIEFEDRAEG 438 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 I+ AIE+ N D +V+A KG E I+ K D +++GL Sbjct: 439 IKHAIEVANPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480 >gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] Length = 481 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 126/497 (25%), Positives = 213/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR ++ G +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A++ D V+K ++ A ++ + Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GKKEDYPGDAAIAERYL 481 >gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 520 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 179/525 (34%), Positives = 278/525 (52%), Gaps = 59/525 (11%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------- 54 +L++L++ + +I V+ + + ++ G++FV + + Sbjct: 4 RLKELLHN-----------IVNADFDIEIKGVTCNPKRVKEGYLFVCVS-ERSKEHVTCL 51 Query: 55 -DG--HLFIPQAIAQGAEAIVV----------------------SSAYSLQDFSATIRSN 89 +G H + I QGA+ V+ + + T + Sbjct: 52 PNGCVHNCVDVVI-QGAKKDVIPVLRHWDPENLIVNKHTRQLYNENWIPVSATRMTSTPS 110 Query: 90 TPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +L + + S SR Y K P+ + AVTGT+GK+SV F +QI Q + IG Sbjct: 111 FAVLYHSDPQGIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ---DNVASIG 167 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T ++ +DN LTTPS L L ++++ V H+++EASSHG+DQ+R+ G++L A Sbjct: 168 TLGTCVNNNRKDNSLTTPSADDLYSTLRDINNKNVEHLALEASSHGIDQYRIHGLRLNAA 227 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTN +DH+DYH++ YF AK RLF+E+LPKE AI+ AD E++ A G +V Sbjct: 228 AFTNFSQDHLDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKV 287 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G + I L K N Q +TI + + ++ FP+ G+FQ YN L A G+ I+ G+ Sbjct: 288 ITYGKKNSDITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGM 347 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D ++KL GR E V +VDYAHT ++L+ L +++ + +I++V Sbjct: 348 DYQ--RMCIDKLASPSGRMEKV-----NTFAFVDYAHTPSALKQALLSLKWHFNKKIVLV 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGG+RDQ KR MGKIA LA IVTDDNPR EDP KIR +I+ P +E G+R + Sbjct: 401 FGCGGNRDQTKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKK 460 Query: 448 AIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 AI I + ++ +L+VAGKGHE I+ G+ D ++IRE Sbjct: 461 AIEKGINIAHDENMILLVAGKGHERFQIIE-GQSLEFSDVEVIRE 504 >gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 514 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 131/477 (27%), Positives = 213/477 (44%), Gaps = 20/477 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V+ S +Q G ++V + G + G F A A GA A++ + S Sbjct: 40 TGVTLSSGDVQPGDLYVGLRGVRVHGARFAADAAASGAVAVLTDPDG----LADAQGSGL 95 Query: 91 PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++ + R L A+ ++ ++P + VTGT+GK+SV + + ++ G+ + Sbjct: 96 PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTS 155 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + +RLTTP L L+ + V V++E S+ L +HR+DG+ Sbjct: 156 TAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDIA 215 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +F NL DH+D + + YF+AK F+ + + + R Sbjct: 216 AFINLSHDHLDDYADFEEYFDAKAAFFDPDRARRGVVSLDTEWGQRIVDGSRIPMTTIAS 275 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + ++ + + P+PG F NA +A + + G Sbjct: 276 KPGVDADWTVTVLEQTPDSTGFRLE-GPDNRVLVSRVPVPGWFMAANAGLAIVMLVESGY 334 Query: 328 DSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 D V L++ +PGR E V + G +VDY HT ++ E L+ +R T G+ Sbjct: 335 DLDAVAHVLDRDGGIQAYIPGRAERV-SGETGPLFFVDYGHTPDAFEQTLQALRPFTPGK 393 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------P 437 +++VFG GDRD KR MG IA LAD+ ++TD +PR EDP IRA +I G Sbjct: 394 LVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGAMAAVPDR 453 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E + AIRTA+ ++ + D ++VAG GHE H V G K D R L Sbjct: 454 EIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GRKIPFSARDDARAALR 509 >gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 481 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 129/497 (25%), Positives = 214/497 (43%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A G ++ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A++ D V+K I K + ++ + + Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIDNSKAFSFSATGKLAGDYDIQ- 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 293 ------LIGHFNQENAVAAGLACLRLGASLENIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GKKEDYPGDAAIAERYL 481 >gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 525 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 144/478 (30%), Positives = 222/478 (46%), Gaps = 17/478 (3%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + R + V+SDSR + G +F A G K G F A+ GA A++ + Sbjct: 33 EARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFAASAVEAGANAVLTDAQGRDILRR 92 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141 + P+LVVD+ R + A+ + G+ + AVTGT+GK++ A V+ I G Sbjct: 93 DLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSYAVTGTNGKTTTAYMVESILGALG 152 Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG + + LTTP P L L++ G T V +E SSH L Q R D Sbjct: 153 RKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFHRRGGGTDVVMETSSHALVQGRSD 212 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKE 255 ++ FTNL +DH+D+H T + Y+ AK LF + + + + A Sbjct: 213 PVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPERARNAVVSVDGEYGRRLLAECAP 272 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ A + + K A+ V S +G+ LPG+F V NA Sbjct: 273 RLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSSFVLESTDGRRLATSTSLPGDFNVANA 332 Query: 316 LVAAGLCIAIGIDSALVLEHLE--KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 +AA + + G + L VPGR E + R+ VD+AH + +L + Sbjct: 333 ALAAVMVMTAGYSPDELARALPAGINPAVPGRMEVLNAR---PRVIVDFAHNTEALVNAM 389 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R T GR++V+ G GDRD+GKRP MG D +TDD+P +EDP IRA +I Sbjct: 390 KALRPSTEGRLVVLTGSAGDRDKGKRPAMGAAVARYGDFVYITDDDPHNEDPAVIRAAVI 449 Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G G +E +R +AI AI +++D +++AG+GHET+ V ++ + Sbjct: 450 EGTRGFDTPVVEIADRSQAIDAAIAEASERDTILLAGRGHETIQEVAGVPIELDDRVE 507 >gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] Length = 572 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 132/518 (25%), Positives = 222/518 (42%), Gaps = 43/518 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q E + +S DSR ++ ++VA+ G K G F +A+ A AI+ Sbjct: 42 EALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101 Query: 73 VSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +A A + + +LV D+ R + A+ +YG L +G + + Sbjct: 102 TDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYAVTGTNGKTT 161 Query: 132 FVQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + IG + + + LTTP +++ L+ + GV+H + Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGECGVSHAA 221 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH +D HR+DG+ FTNL +DH+D H T Q YF++K +LF + A+I Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTERAVI 279 Query: 247 YADDAYSKEVMKR---------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ADD + +++++ + G + + + V + Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPG 344 T++ D + A L + IG + L +VPG Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTALTPIVPG 399 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R + + VD+AH + L L+ + GR+I+VFG G+RD KRP+MG+ Sbjct: 400 RMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMGE 456 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIE 454 IA ADI IVTDD+P EDP IR ++ G +G R AI AIE Sbjct: 457 IAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAIE 516 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + + +D +++AG+GHET V + ++ + + + Sbjct: 517 LADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554 >gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299] gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299] Length = 462 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 211/472 (44%), Gaps = 17/472 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ +++DSR + G +FV IVG K DGH F A+A GA AIV + Sbjct: 1 DVEVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAAGAVAIVCERPID------GL 54 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +VV + R L A+ YG + VTG SGK++V V+ I + + Sbjct: 55 GVDVPQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRC 114 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T S D ++P + + ++ + G ++E SS L Q R+D Sbjct: 115 GVIGTTG-YSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDF 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL DH + A++ ++ I S Sbjct: 174 DVAVFTNLRGDHHEGDAASCRNATAELFRRLTDPERQRAVINL---DVSTAEDGEKPFDD 230 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S + +++ + VTI FD + L GE V N A IA Sbjct: 231 AAYFSEAASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIA 290 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + I ++ E +E + PGR E V + + VDYA T +L+ ++++R + + Sbjct: 291 LEIPLDVIAEGVEAMEPAPGRMELV-DEGQPFSVVVDYAQTPEALKRAIESVRKTGANNV 349 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIE 441 I VFGCGGDRD KR MG++A + +DI VT+DNPR+EDP KI +I + + Sbjct: 350 ITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDITMKLQNMCRRYV 409 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR AI M + D +++ GKGHE IV +K D R+ L Sbjct: 410 IVDRFYAIRAAIAMAGEDDAVLICGKGHEDY-IVVGTKKHWFDDRVEARDAL 460 >gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] Length = 481 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 124/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ D V+K ++ A ++ + Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVEHQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R +AI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDAVIIAGKGADCYQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GVKESYPGDAAVAERYL 481 >gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] Length = 498 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 215/479 (44%), Gaps = 27/479 (5%) Query: 31 NEVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAI-AQGAEAIVVSSAYSLQDFSATIRS 88 + + +D R + +F+A+ G K D + Q ++V SA+ Sbjct: 26 SGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAYQSAS--- 82 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +L V + + L+ A Y I+AVTGT+GK++V ++ Q + G + Sbjct: 83 ---VLPVLHLKTMLADLAFGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKAAV 139 Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG LTTP + + L L G V +EASS GL+Q RL + + Sbjct: 140 IGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACVSI 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH AY +KM L + A++ ADD++ E + + Sbjct: 200 DVALFTNLSQDHLDYHGDMAAYGRSKMILASWPTLR--LAVVNADDSFGVEFLAHVQHRN 257 Query: 265 CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +VG+ + V Q++ + + G P+ GEF N + + Sbjct: 258 IDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALVFATLV 317 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380 +G D++ V L + PGR + + VDYAHT ++LE L +R Sbjct: 318 RLGYDASEVKRALAGVTPAPGRMQ---HIEGEPAVVVDYAHTPDALEKTLLALRPFANKR 374 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 G++ VVFGCGGDRD+ KRP+MG A+ AD ++T DNPRSE PE I EII GI Sbjct: 375 MGKLWVVFGCGGDRDRSKRPLMGAAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDAPL 434 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI A+ N QDV+++AGKGHE+ + D L Sbjct: 435 QNNIHVEVDRPVAIEFAVRKANAQDVVLLAGKGHESTQTIGTQVIA-HSDAQCALTALS 492 >gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 491 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 157/506 (31%), Positives = 229/506 (45%), Gaps = 35/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ DL + M +R I V +DSR + G ++ A G G F+ Sbjct: 1 MKIADLTLE---------HTTVMGDPDRDITSVDNDSRTTKPGGLYAAFPGANVHGASFV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGK-HPENIL 118 Q + +G A + A A + ++ ILV + R A+++YG + Sbjct: 52 TQLVDKGVRAFLTDPAGVEIMREAQVDLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMF 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ + Q G ++ IG +T I+ D+ TTP L + L+ + Sbjct: 112 GVTGTNGKTTTTFILDAFLQALGHTTGLIGTVATVIAGDRVDSVRTTPEASALHQLLARM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GV S+E SSH L QHR+DG+ SFTNL +DH+DYH T YF+AK LF Sbjct: 172 RDAGVDTCSMEVSSHALSQHRVDGVHFDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPE 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 ++ D ++++++ + V + + Sbjct: 232 FASRGVVVL--ADDWARKLVSVSQIPVVTVSMNSEDKPDY------LVVQGDSWELHTPQ 283 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGG 356 F LPG F V N +A + + G+ V VV PGR E V N+ Sbjct: 284 GRIPFTPVLPGLFNVTNTALALAMLLEFGVQFDAVASIANGTEVVVPGRMEVV--NAEHP 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 R +DY+HT +++E +L ++ ++VV G GGDRD KR MG A AD+ IVT Sbjct: 342 RAIIDYSHTPDAIEKVLD---RLSGDPVVVVVGAGGDRDSTKRAAMGVAAARGADVVIVT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 DDNPRSEDP IRA+++ G E NR AIR A+E+ +VVAGKG Sbjct: 399 DDNPRSEDPAAIRAQVLAGAREAAGARAHTVEECENRGTAIRRAVELAGANGTIVVAGKG 458 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HET + GE D D RE + Sbjct: 459 HETGQEIA-GEVLPFSDRDKTREAIE 483 >gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia gladioli BSR3] gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia gladioli BSR3] Length = 514 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + SDSR +QAG +F+A + D I A+A+GA A++V D + ++ Sbjct: 30 NLYSDSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHA- 88 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V + AS YG + + AV TGT+GK+S ++ IG Sbjct: 89 ---VPDLGALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIATALSALRTPCAVIGT 145 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + TTP L ++L+ L +G V++E SSH L Q R++G Sbjct: 146 LGSGMPGRLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGRVNGTAFDVAV 205 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AH 261 FTNL +DH+DYH+T +AY AK +LF + A++ DDA ++ Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AVVNRDDAAGARLLATLAGRVRTVA 263 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + + + +V A + + G F V N L G Sbjct: 264 YGIDERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFNVSNLLAVLGT 323 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI 379 + + L L +L V GR + +G VDYAHT ++LE L+ +R I Sbjct: 324 LLVADVPFEAALAELRRLESVNGRMQRLGGRVANDEPLVVVDYAHTPDALEKTLEALRPI 383 Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE P I +I+ G+ Sbjct: 384 AEARGGALVCMFGCGGDRDATKRPLMGGIAERLADRVVVTSDNPRSEPPLAILEQIVAGM 443 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+++AGKGHE + G+K+ D D Sbjct: 444 KTPGAALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKREFSDQD 496 >gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] Length = 513 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 155/497 (31%), Positives = 237/497 (47%), Gaps = 22/497 (4%) Query: 11 FPELINQLSIFP-----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 P+++ +++ P + V+ DSR + G ++ A+ G G F A+A Sbjct: 19 LPDVLRSITVAPGPSGGAALAGVVLTGVTHDSRAVLPGDLYAALPGAHVHGADFAAGAVA 78 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 GA A++ + + + R P+LV D+ R+ L+ A+ +YG +L VTGT Sbjct: 79 AGAVAVLTDPVGAA---ALSGRLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGT 135 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ A + + +G ++ +G T + + TTP L L+ + +GV Sbjct: 136 NGKTTTAFLLDAGLRAAGYTTGLLGTVQTRVAGTVVPSVRTTPESGDLQALLATMVERGV 195 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 S+E SSH L QHR+D ++ +FTNL +DH+D+H T + YF AK LFE S Sbjct: 196 GAASMEVSSHALAQHRVDALRFAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEP---ARS 252 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A + D + G + V + +G D Sbjct: 253 AAAVVCVDDDWGRRLAALRPDARTYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKADL 312 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG F V NAL A L A+G+ E + L VPGR E + VDY Sbjct: 313 SLALPGRFNVANALGALALLAAVGVPLEAAAEGISSLPGVPGRMERIDAGQ-PFLALVDY 371 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++E +L +R I +GR++VV GCGGDRD+ KRP+MG A LAD+A+ T DNPRS Sbjct: 372 AHTPGAVETLLATVRPIVTGRVVVVLGCGGDRDRAKRPLMGAAAARLADLAVFTSDNPRS 431 Query: 423 EDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP +I +++ G + + +R AI A+ D ++VAGKGHE+ V Sbjct: 432 EDPARILEQMLAGARGAPGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKGHESGQDVA 491 Query: 477 NGEKKMSVDCDIIREIL 493 G D +++R L Sbjct: 492 -GVVTPFDDREVLRSAL 507 >gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] Length = 552 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 145/506 (28%), Positives = 227/506 (44%), Gaps = 34/506 (6%) Query: 10 DFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL +QL + ++ ++ DSR ++ G ++ A+ G + G F QA + Sbjct: 16 TLEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASL 75 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA AI+ A + + + P+LVV + R + A+ LYG + + +TGTS Sbjct: 76 GAAAILTDPAGAGP----ALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTS 131 Query: 125 GKSSVAS--------FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 GK++ A + + +G G T+ D R+ TTP L Sbjct: 132 GKTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQA 191 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + +GV +++E SSH L R+D F NL +H+++H + YF AK + Sbjct: 192 LFAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQ 251 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF + K DD Y + ++ + + G+ + V T Sbjct: 252 LFTKARSKLGVVNH--DDEYGRRLLTESEVPVISFSAEGHPDADWRAEDVIVGSLDSTFT 309 Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + EG+ PL G F V N L A A G+D + + + VPGR E V Sbjct: 310 AVGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA 369 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 VDYAH ++++E +L+ +R +T GR+ +V GCGGDRD KR MG A LAD Sbjct: 370 GQ-PYLAVVDYAHKTDAVESVLRALRKVTEGRLYIVLGCGGDRDTTKRGPMGAAAARLAD 428 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 +A++T DNPRSEDP I + ++ G I +R AI A+ D ++ Sbjct: 429 LAVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEAVVRAEAGDTVL 488 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDII 489 VAGKGHE + NG + D ++ Sbjct: 489 VAGKGHEQGQDI-NGVVRPFDDRLVL 513 >gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 511 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 120/514 (23%), Positives = 203/514 (39%), Gaps = 26/514 (5%) Query: 1 MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52 M L ++I F ELI P + R + ++S DSR ++ G +F G Sbjct: 3 MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 K D ++ A QGA + + YS Q + + P ++V + +K ++ + +G Sbjct: 62 KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119 Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167 N ++ TGT GK++ F + + + G Q+ LTTP Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + + + ++ +E SS + R+ G+ L G F N+ DHI + F Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + E++ ++ + + + ++AH+ G +V+S G + H Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297 Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VT + K + +AA A + VPGR Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 EF+ G VDYAH SL ++ GR+IVV G G + + +R +G+ Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 AD+AI+T ++ EDP +I A+I I I +R AI A M D Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L +A KG ET + D I ++++ Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510 >gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus deserti VCD115] gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Deinococcus deserti VCD115] Length = 493 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 142/507 (28%), Positives = 221/507 (43%), Gaps = 33/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL L++ + + V+ ++ +Q G+ FVAI G K DGH F+ Sbjct: 1 MRLHDL--------AAALNVPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFL 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 Q GA A++ + S P L V + R L+ A+ L G ++ Sbjct: 53 QQVREAGAVAVLGE------GMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174 VTGT GK++ + + + + +GL + + TTP + + L Sbjct: 107 GVTGTDGKTTTSWLTRHLLREAGLQTGLLSTVGFELPDGELRHFPAHFTTPEAPQVQQTL 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + G + V +EASSH L R+ G+ +T+L +H+D+H T + Y Sbjct: 167 QDMVAAGASAVVLEASSHALALDRVRGVDWDVAVWTHLTSEHLDFHGTVENY----FADK 222 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L+ + A++ ADD ++ ++ R S+ G + ++ Sbjct: 223 RRLVERAPFAVLNADDPWTGQL--RGVAPAETTYSLDGAGADWQATDIQERLTGLHFQVN 280 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 FD P+ G F V NAL A +G D+A + L VPGR E V + Sbjct: 281 SPLGAFDAALPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPGRMELVPAGGQ 340 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413 R+ VD+AHT SLE L +R T+GR+ V+ G G RD GKR +G++A LAD A Sbjct: 341 EVRVIVDFAHTPPSLEKALSTLRATTTGRLWVLIGSAGGPRDPGKRAPLGEVATRLADHA 400 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + T+++ R E I E+ G FI G+R EAIR I+ D +++AGKG Sbjct: 401 VFTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKG 460 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495 E G + RE L L Sbjct: 461 PEDTLERLTGTLPW-NEVQEAREALAL 486 >gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 514 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 173/537 (32%), Positives = 265/537 (49%), Gaps = 73/537 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED----- 55 MKL++L++ + +I V+ + + ++ G++FV + + Sbjct: 1 MKLRELLHNII-----------DVNFDIEIKGVTCNPKRVKEGYLFVCVS-ERSKEYATC 48 Query: 56 --G------------HLFIPQAIAQGAE--------------AIVVSSAYSLQDFSATI- 86 G H + I QGA+ IV L + + Sbjct: 49 DTGIHILPTESQCYVHNCVDVVI-QGAKKDVIPVLDYLDPENLIVNEHTKQLYNKNWIPV 107 Query: 87 -------RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138 +L N ++ S SR Y K P+ + AVTGT+GK+SV F +QI Q Sbjct: 108 SATCMTNTPGFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 167 Query: 139 RSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 SG ++ IG T N LTTP L + L V H+ +E+SSHG+D Sbjct: 168 NSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---YATLRGISVEHLVLESSSHGID 224 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R+ G+KL A +FTN +DH+DYH++ Y K RLF E+LP+ AI+ AD Sbjct: 225 QYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGA 284 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++K A +V++ G +G I L + + HN Q +T+ ++ + ++ FP+ G+FQ YN Sbjct: 285 LLKIAEKRSNKVVTYGKKGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNL 344 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + +EKL PGR E V +VDYAHT ++L+ L + Sbjct: 345 LCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP-----FAFVDYAHTPSALKQALLS 394 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ + +II+VFGCGG+RDQ KR MGKIA AD I+TDDN R EDP KIR +I+ Sbjct: 395 LKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLH 454 Query: 436 IPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 P +E G R +AI +++ N+ +L+VAGKG+E I+ N D ++I+ Sbjct: 455 CPDALEIGGRRKAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 510 >gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halorhodospira halophila SL1] gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halorhodospira halophila SL1] Length = 503 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 162/473 (34%), Positives = 234/473 (49%), Gaps = 12/473 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TI 86 I ++ D+R ++ G +F+A+ G+++ G ++P A+ GA A+V + +A T Sbjct: 28 IQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAARTATE 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 +S P++ V R+ L A RLYG ++AVTGT GK+SV+ F+ Q+ Sbjct: 88 QSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLLSGPEAPW 147 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + LTTP L KAL+ + G T V++EASSH L+Q RL G Sbjct: 148 GVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQGRLAGTA 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + T+LGRDH+DYH + +AY +AK RLFE A + D + Sbjct: 208 VDLAVLTHLGRDHLDYHGSVEAYADAKSRLFEF---PSLRAQVLNLDDALGRRLHDRAAG 264 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S + + V + Q+T+ V G PL G F V N L A + Sbjct: 265 AAFTYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANVLAAVAAAL 324 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G VL L L VPGR E + + VDYAHT +LE L +R T+GR Sbjct: 325 ALGRPMDGVLARLPTLRPVPGRMEQFHADGSPL-VVVDYAHTPGALEQALTALRAHTTGR 383 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIPGFIEK 442 + VVFGCGG+RD GKRP+MG++A LAD ++TDDNPR ED A G Sbjct: 384 LCVVFGCGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAVIRAAVAAGAGEGAEVV 443 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 R AI AI DV+++AGKGHET + +G++ D + + +L + Sbjct: 444 AGRGVAIGGAIAWGAPGDVVLIAGKGHETEQEI-DGQRFPFSDREEVARLLSV 495 >gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter cryohalolentis K5] gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter cryohalolentis K5] Length = 570 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 146/510 (28%), Positives = 234/510 (45%), Gaps = 47/510 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVS--------- 74 + DSR + + +FV + + + + QA A A I+ Sbjct: 59 NIPFQQFCLDSRQLASNDVFVLLKSHTPNCQKSRDHLYQA-ANNAAFILSEIDPRALLNT 117 Query: 75 ------------SAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENIL 118 + + + + P+L V N R FL L +RL + P ++ Sbjct: 118 TSVSNHADITLPNDSTAKAQQQLVALPCPVLHVPNIRDFLGTLIQARLQYQQPVTLPTVI 177 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++ V Q+ Q +G+SS +G TT + + + L + Sbjct: 178 AVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRFGALVQASHTTGDVLAVQQFLYQM 237 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 +G +++EASSHGLDQ RL G+ + +TNL RDH+DYH Y AK +LF++ Sbjct: 238 GKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKA 297 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293 P + AII DD +++ ++ AH + V + + ++++ Sbjct: 298 HFPDLTHAIINIDDEHAQIMLDTAHASNLTVWTYSLDSLKTATFVAANITPSLRGVEISL 357 Query: 294 SVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + D PL G F V N L A +A+GI + + +L GR + Sbjct: 358 RTDFDDGTMNHLDIVSPLLGRFNVANLLAAMAAAVALGISLEHIAAVVPQLQGAVGRMQR 417 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +N G VDYAHT ++L +L +++T G++ VFGCGGDRD GKRP+M + L Sbjct: 418 VPSN--DGCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDAGKRPLMAQAGLA 475 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463 AD ++T DNPR+EDP I ++ G+ + R AI A+ D++V Sbjct: 476 GADKVVLTADNPRTEDPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQAAADDIVV 535 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHET + N + D I++ L Sbjct: 536 IAGKGHETYQEI-NHVRYDFDDSVILQNAL 564 >gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] Length = 506 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 143/494 (28%), Positives = 222/494 (44%), Gaps = 20/494 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL QL + + E + ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELAGQLGVAAPE-TEAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + + P+LV +N R + A+ +YG+ + +TGTSGK++ Sbjct: 76 VLTDPSGAER----AAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + + I + TTP L + + +GV V++E Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG FTNL +H+++H + YF AK +LF + Sbjct: 192 VSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGVVNT-- 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307 DD Y + + +A + G+ + V T+ PL Sbjct: 250 DDEYGRRLAAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVRVTARSPLA 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A A G+D + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDAGQ-PYFAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +LK +R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPRSEDP Sbjct: 369 AVESVLKALRKVTKGRLHIVLGCGGDRDTTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428 Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A ++ G +R AI A+ D ++VAGKGHE + G Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487 Query: 480 KKMSVDCDIIREIL 493 + D ++RE + Sbjct: 488 VRPFDDRQVLREAI 501 >gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] Length = 530 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 136/485 (28%), Positives = 217/485 (44%), Gaps = 24/485 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I VS + + +Q G +F+ I G K G F+ A+A GA A++ +A Sbjct: 46 PQILGVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGLEFLGDGL-- 103 Query: 88 SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+ VV + RK + A +YG + + VTGT+GK++ ++ I G + Sbjct: 104 -SIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDALGEETG 162 Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + + LTTP L L+ ++ Q V+ V++E SSH L R+D ++ Sbjct: 163 LIGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGRVDSLRF 222 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +TNL +DH+D H T YF K +LF + + ++ Sbjct: 223 AVSGYTNLTQDHLDLHGTMDEYFETKAQLFTAERSERAVVMVDDQYGQRLAERALVPTET 282 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + + + +G++ LPG F V N +AA + +A Sbjct: 283 LSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGALAAVMVLA 342 Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 G++ + L VPGR + VG + VD+AH S++L L +IR Sbjct: 343 SGVELDTLQRALNAGDPLSVAVPGRMQVVGESPV---AVVDFAHNSDALAKALDSIRPGE 399 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 GR IVVFG G+RD+ KRP MG +A ADI IVTDD+P EDP IR ++ G Sbjct: 400 QGRRIVVFGATGERDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAPIREQVASGAQQVL 459 Query: 438 -------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 R +A+ A+ + + D ++VAG+GHE V + ++ D + Sbjct: 460 DTERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAGRGHEVSQDVAGIDVEL-DDRVELA 518 Query: 491 EILGL 495 + L L Sbjct: 519 KALNL 523 >gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 464 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 150/463 (32%), Positives = 234/463 (50%), Gaps = 16/463 (3%) Query: 34 SSDSRHIQAGWIFVAIVGNKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 S+D+R ++ IF + G+K DG + +A+ + I+ + S Sbjct: 14 SADTRTLRKSEIFFDL-GSKSNKDG-DYFFKALKKKPLFIITQN-------QKRNLSGKN 64 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V N F S + K P+ +AVTGT+GK+SVA F +I G+ IG Sbjct: 65 FIIVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGIKVGSIGTLG 124 Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ LTTP K L++ + + H +EASSHGL Q+RL+ I G FT Sbjct: 125 VFENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINFDCGIFT 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL DH+DYH+T + Y N+K+ LF++L+ K + ++ + K + N +LS Sbjct: 185 NLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKKLNLLSY 244 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G +G I + ++ I++ GK L G FQ+ N L A C + GI Sbjct: 245 GRKGNIIKIISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLACYSSGISFE 304 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + ++ PGR + + + +DYAHT ++LE + I+ + +I +VFGC Sbjct: 305 KIFRICSRIDNPPGRLQLFKK--QNKTVIIDYAHTPDALEKTIIEIQKFFNKKINIVFGC 362 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GGDRD KR MGKIA L + +TDDNPR E+ KIR +I G P I +R +AI+ Sbjct: 363 GGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVVPSRKQAIK 422 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++I MLN+ ++L++AGKGHE ++ N +K D + L Sbjct: 423 SSISMLNE-EILLIAGKGHEEFQLIKN-KKIAFSDHHCVTRYL 463 >gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] Length = 481 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 126/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A G ++ Sbjct: 9 DILKKDSLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A++ D V+K ++ A ++ + Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + + +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIHVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R +AI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GKKEDYPGDAAIAERYL 481 >gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 476 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 224/485 (46%), Gaps = 27/485 (5%) Query: 14 LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L ++ + + +I +S D+R ++ W+FV G+ DG F+ +A+ +GA ++ Sbjct: 6 LNELFTLLHIPCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGAV-VL 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130 + T V+ R+ L YG ++ VTGT+GK+SVA Sbjct: 65 CDEPLKQEHVYYTP-------YVERIRQALLEL---YYGDLCARLHVIGVTGTNGKTSVA 114 Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 S + Q+ + QIG S + TTP LA G+THV +E Sbjct: 115 SIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHVVMEV 174 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH +DQ+R+ ++ +TN+ +DH+DYH ++ Y K +L L P+ + Sbjct: 175 SSHAIDQNRISFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGTIIY---- 230 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ + + + A +S+G Q L +V + +S + + F L G Sbjct: 231 NSDLSYMQELVNLAQHTCISIGMQAAHFPLSEVQLSAH----DLSFHLQGYAFHARLLGM 286 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 VYN A + G +++ E+L V GR E G I++DYAHT++++ Sbjct: 287 VNVYNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEV--MEVGGFTIWIDYAHTASAV 344 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + +L ++ GRI+ + GCGG+RD+ KRP M IA +DIA+ T DNPR E I Sbjct: 345 KELLLFANSVKKGRILTILGCGGERDRTKRPQMAAIAAAYSDIAVFTSDNPRGESVADIL 404 Query: 430 AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 ++ + NR AI+ I++ D++++AGKG E I G + D Sbjct: 405 QDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGREYPFSDRSC 463 Query: 489 IREIL 493 ++E L Sbjct: 464 VKERL 468 >gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 508 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 220/472 (46%), Gaps = 19/472 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDG-HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIR 87 I+ + SDSR ++ G++F + + + + AI GA+ I+ + ++ + I Sbjct: 26 ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNGAKIILYDTKQKFKNGTLKKII 85 Query: 88 SNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ PI+ K L + + ++ ++ +TGT+GKS+ V Q + Sbjct: 86 NHVPIIYFFKLSKNLPQILKKYYHFENNFTLIGITGTNGKSTTTHIVSQWANLLNVKIGI 145 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G I++ + TT S + + L ++ Q + ++E SSHG+ QHR++ + Sbjct: 146 MGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHRIEQLPFK 205 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+ +H+DYH+T Y NAK F + ADD +K +K+ ++ Sbjct: 206 IAILTNITPEHLDYHRTMDNYINAKKAFFFKYNINTLIIN--ADDLIAKTWIKKLNHKNV 263 Query: 266 RVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++ Q +IH K+ N + + L G F V N L+A Sbjct: 264 ITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWGHGILNSTLIGHFNVINILLA 323 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + +++ + + + GR E ++ +DYAH +N L+ +L ++ Sbjct: 324 LATLLELNYPITDLVKVCKYIKTISGRME-HIHIVNKPKVIIDYAHNTNGLKNLLSTLKE 382 Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +I +FGCGGDRD+ KRP MG IA ++D I+T+DNPR+E P KI I+ G Sbjct: 383 IFNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMSDQVILTNDNPRNEHPLKIIKNILSGCK 442 Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 NR AI+ A+ +K+D++VVAGKGHE I+ N + D Sbjct: 443 FKNKIRIIPNREHAIKFAVNNADKEDIIVVAGKGHEKYQIINN-KYYHFSDH 493 >gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase [Acinetobacter baumannii ATCC 17978] Length = 414 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 133/405 (32%), Positives = 202/405 (49%), Gaps = 18/405 (4%) Query: 102 LSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SF 156 + + R + P I+AVTGT+GK++++ + ++ +G T Sbjct: 1 MGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPN 60 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 + TT + L AL + QG T S+EASSHGL+Q RL+G + ++NL RDH Sbjct: 61 LTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDH 120 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGY 272 +DYH T +AY AK RLF+ A+I DDA++ ++K A N + S+ Sbjct: 121 LDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQ 178 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + + + F PL G F V N + A G D + Sbjct: 179 NTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQAL 238 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + + KL PGR + + + R VDYAHT ++L +LK ++ S ++ VFGCGG Sbjct: 239 VNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGG 296 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEA 448 DRD+GKRP+M + ALD A+ I+T DNPR+EDPE+I A++ GI E +R EA Sbjct: 297 DRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREA 356 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I+ E D++V+AGKGHE + NG + D +R + Sbjct: 357 IKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDVVEVRSAI 400 >gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] Length = 510 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%) Query: 14 LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68 L+++ + E+K V+ DSR + +F G+ ++ A+ +GA Sbjct: 11 LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A V Y+ + ++V N +K ++L + YG I+A TGT GK Sbjct: 65 TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117 Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 ++ A F + ++ L S + LTTP + L + + G Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +TH+ +E SS ++R+ G+ G F N+ DHI ++ + + K Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKC 237 Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K A + + + YQ F L K Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D + +PG++ NA A + G + L+++H+ PGR Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G IYVDYAH SL+ + ++ T GR+I V G GD+ +RP GK Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 + D I+T D+P EDP KI EI I + +R AI AI+M D+ Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +V+AGKG + + + D ++ ++I Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506 >gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus geothermalis DSM 11300] gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis DSM 11300] Length = 488 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 206/484 (42%), Gaps = 24/484 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P+L LS + ++ V+ + ++ G++FVAI G + DGH F+P+ A+GA A Sbjct: 3 LPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ A + S P L V N R L+ A+ L G ++ VTGT GK++ Sbjct: 63 VLGE------GLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 + + + + +GL + + TTP + L L G Sbjct: 117 TSWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAGGEA 176 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +EASSH L R+ G+ +T+L +H+D+H T + Y +L+ + A Sbjct: 177 AVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENY----FADKRKLIERAPFA 232 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ DD ++ ++ R S Q + + ++ +F Sbjct: 233 VLNVDDPWTAQL--RGVAPQETTYSAENQHADWQARHIEERATGLHFQVASPLGEFAAHL 290 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G F V NAL +G ++E L VPGR E V + R+ VD+AH Sbjct: 291 PMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPRVIVDFAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 T SLE L +R T GR+ V+ G G RD GKR +G++A LAD A+ T+++ R Sbjct: 351 TPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEVATRLADHAVFTEEDCRDT 410 Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I E+ G F +R EAIR I D +++AGKG E Sbjct: 411 PLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKGPEDTLERNGE 470 Query: 479 EKKM 482 Sbjct: 471 VIAW 474 >gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] Length = 486 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 134/507 (26%), Positives = 211/507 (41%), Gaps = 35/507 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL +L++ P + V+ + ++ G+ FVA+ G + DGH F+ Sbjct: 1 MKLHDL--------AAELNLTPP-AENPDVTGVTHHAGWVRPGFAFVAVRGARVDGHAFM 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A A GA + + S P + V R L+ A+ L G ++ Sbjct: 52 AEAAANGAVCVFGE------GLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174 +TGT GK++ + + + + +G+ + + TTP + L Sbjct: 106 GITGTDGKTTTSWITRHLLRAAGVRTGLLSTVGYELPDGALRHFPAHFTTPEAPEVQSTL 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S + + G V +EASSH L R+ + +T+L +H+D+H T + YF K RL Sbjct: 166 SEIGASGGEAVVLEASSHALALDRVRAVDWDVAVWTHLTSEHLDFHGTVEQYFADKARLV 225 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E A +A + A V + + Sbjct: 226 E-------RARFSVLNADDPWTAQLRPRAAAYVTYGVEDVADWRAGDIEERSTGLHFHVL 278 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +FD P+ G F V+NAL A +G ++ L VPGR E V Sbjct: 279 SPLGEFDAHLPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPGRMELVPGGDA 338 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413 G R+ VD+AHT SLE L+ +R+ T GR+IV+ G G RD GKR +G++A LAD A Sbjct: 339 GVRVVVDFAHTPPSLEKALEALRSTTRGRLIVLLGSAGGPRDPGKRAPLGEVATRLADTA 398 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I T+++ R + I E+ G F +R +AIR A+ + D +++AGKG Sbjct: 399 IFTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLLAGKG 458 Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495 E E + R L + Sbjct: 459 PEDTLE-RGAETLPWDEVAEARAALAV 484 >gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9313] gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9313] Length = 507 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 222/489 (45%), Gaps = 19/489 (3%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + VS DSR + G +F+ + G + DG F QA+A A + Sbjct: 16 VPEGLANPSLAMVSCDSRSVAQGCLFLGLPGEQVDGGSFWRQALAA--GAEAAVIGPAAA 73 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 ++ ++V + ++ A+ + + + VTGT+GK++ ++ + Sbjct: 74 ALQPPGPTDAVVVVPEPVAAWVGQLAAAFWQQPSSRFALIGVTGTNGKTTTTHLIEHLSV 133 Query: 139 RSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G S+ G + +++ TT L L+ G +E SSH L+Q Sbjct: 134 AVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGVMEVSSHALEQQ 193 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSKE 255 R+ G + FTNL +DH+DYH + +AYF AK +LF L + A++ D + Sbjct: 194 RVAGCRFAGAVFTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESGSAKAVVNIDSPWGAR 253 Query: 256 VMKR----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +R + + + + ++ + Q + + F PL G F Sbjct: 254 LAQRLGDTCWRSSLAEGVLQQADAELKMTELTMSSDGVQGRLISPCGEGWFDSPLMGRFN 313 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSN 367 + N L A G+ + G+ L+L+ + VPGR E V + + VDYAHT + Sbjct: 314 LMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADATQVPTVLVDYAHTPD 373 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 LE LK R TS + VFGCGGDRD+GKR M IA LAD +VT DNPR+EDP++ Sbjct: 374 GLENALKASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQ 433 Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I A+++ GIP + +R AI AI DV++VAGKGHE I+ K Sbjct: 434 ILADVVAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVLVAGKGHEDYQILGTS-KVHFD 492 Query: 485 DCDIIREIL 493 D + L Sbjct: 493 DREEAERAL 501 >gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct] Length = 477 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 128/452 (28%), Positives = 210/452 (46%), Gaps = 21/452 (4%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +FVA+ G DG+ +I +A+G ++ S + + N ++ LS Sbjct: 27 VFVALKGLSTDGNKYIDSVLAKGVSLVLTDSH--------EFEDQKRVFYIQNLKEKLST 78 Query: 105 FASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRL 162 A Y P+NI+ +TGT+GK+S++S++ Q S + +G I +++ Sbjct: 79 LAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTH 138 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT + L K +SY + + +E SSH LDQ R++G+ F+NL DH+DYH+T Sbjct: 139 TTLDILSLYKTISYYKNYQN--LVMEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKT 196 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 YF AK +LF+ + AII DD Y + + V K Sbjct: 197 MDNYFEAKAKLFQF--KRLKKAIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKS 254 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + ++ L G+F + N ++ + + L + V Sbjct: 255 IEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPV 312 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GR E + +I +DYAHT ++LE L+ + + + +FGCGG+RD KRPIM Sbjct: 313 KGRMEVI-ELDNDIKIVIDYAHTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIM 371 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459 +IA + A ++T+DN R E E I ++I G I +R +AIR +IE N+ Sbjct: 372 AQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQG 431 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 D++++A KGHE NG K+ + +II+ Sbjct: 432 DIILLASKGHECYLD-KNGAKEYFDEREIIKN 462 >gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Lactobacillus salivarius CECT 5713] Length = 510 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%) Query: 14 LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68 L+++ + E+K V+ DSR + +F G+ ++ A+ +GA Sbjct: 11 LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A V Y+ + ++V N +K ++L + YG I+A TGT GK Sbjct: 65 TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117 Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 ++ A F + ++ L S + LTTP + L + + G Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +TH+ +E SS ++R+ G+ G F N+ DHI ++ + + K Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237 Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K A + + + YQ F L K Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D + +PG++ NA A + G + L+++H+ PGR Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G IYVDYAH SL+ + ++ T GR+I V G GD+ +RP GK Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 + D I+T D+P EDP KI EI I + +R AI AI+M D+ Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +V+AGKG + + + D ++ ++I Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506 >gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans ATCC 17616] gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans ATCC 17616] gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans ATCC 17616] gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Burkholderia multivorans ATCC 17616] Length = 513 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 217/473 (45%), Gaps = 26/473 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D FI A+A+GA A++ +A + Sbjct: 31 LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + AS YG + + VTGT+GK+S ++ IG Sbjct: 86 LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHN 262 TNL +DH+DYH+T +AY AK +LF A++ DDA + ++++ Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRTIAY 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + V A + D D G F V N L G Sbjct: 264 GIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGAL 323 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379 +A + L + +L V GR + +G + +DYAHT ++LE L +R I Sbjct: 324 LAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 383 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR+I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +I+ G+ Sbjct: 384 VARGGRLICMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGMT 443 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495 >gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 511 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%) Query: 1 MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52 M L +I F ELI P + R + ++S DSR ++ G +F G Sbjct: 3 MTLSXIITVLKDXGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 K D ++ A QGA + + YS Q + + P ++V + +K ++ + +G Sbjct: 62 KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119 Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167 N ++ TGT GK++ F + + + G Q+ LTTP Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + + + ++ +E SS + R+ G+ L G F N+ DHI + F Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + E++ ++ + + + ++AH+ G +V+S G + H Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297 Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VT + K + +AA A + VPGR Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 EF+ G VDYAH SL ++ GR+IVV G G + + +R +G+ Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 AD+AI+T ++ EDP +I A+I I I +R AI A M D Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L +A KG ET + D I ++++ Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510 >gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 493 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 138/508 (27%), Positives = 215/508 (42%), Gaps = 35/508 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ L+ + +Q + DSR + G +FV + G DGH + Sbjct: 1 MNLCELLQATDGVLLQGDARADVQT-------LCYDSRAVTPGALFVCLPGLHTDGHAYA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A A GA IV + P++ V ++R+ L+ A RLYG+ ++ Sbjct: 54 VRAAAAGAVGIVCERPIP------GLPEALPVIQVTHSRRALAQLAIRLYGEPARQLTMI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++ A V + +G IG + TTP L + L + Sbjct: 108 GITGTKGKTTTAHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G +E SS GL R+ GI+ G FTNL DHI + A+ R ++ + Sbjct: 168 VDAGCDTCVMEVSSLGLKMDRVTGIEYDIGIFTNLSPDHIGP---GEHASFAEYRAWKSV 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295 L + I D E + H + + +H + ++ Sbjct: 225 LFRRCRVGIVNADDPQTEAILTQHTCRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTA 284 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 EG ++ +PG F +YNAL A + + ++ + VV GR E V Sbjct: 285 AGPEGGSREYQLAMPGRFSIYNALAAIAAAGILQL-PDTAVQTGLRTAVVEGRVEPVP-I 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + +DYAH + E +L +R R+IVVFGCGG R + +R MG+ LAD Sbjct: 343 HAPFTVVLDYAHNEAAAENLLTTLRAYRPTRLIVVFGCGGGRSRVRRFGMGEACARLADF 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 IVT+DN R E I A+I G+ F+E +R +A+ A++M D++ V G Sbjct: 403 CIVTEDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDALDMARPGDIVAVIG 462 Query: 467 KGHETV-HIVTNGEKKMSVDCDIIREIL 493 KGHET E + +IIR + Sbjct: 463 KGHETTLQ--RGSETIPFCEREIIRNYM 488 >gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia J2315] gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Burkholderia cenocepacia J2315] Length = 512 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 220/472 (46%), Gaps = 25/472 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R +QAG +FVA + D F+ A+A+GA A++ + + Sbjct: 31 LHADTRSLQAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPDGLTDAPAVPVA----- 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + AS YG +++LAV TGT+GK+S ++ IG Sbjct: 86 LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + TTP L ++L+ L + G V++E SSH L Q R++G F Sbjct: 146 GTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263 TNL +DH+DYH T AY AK +LF A++ DDA + +++ R Sbjct: 206 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVLNRDDAAGRRLLEKLAGRVRTIAY 263 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + V A + D D G F V N L G + Sbjct: 264 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGSLL 323 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 A + L +E+L V GR + +G + +DYAHT ++L+ L +R I Sbjct: 324 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALDKTLDALRPIAA 383 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I ++I G+ Sbjct: 384 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVIAGMTA 443 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 PERARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494 >gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. m3-13] Length = 418 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 129/432 (29%), Positives = 195/432 (45%), Gaps = 25/432 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ LI ++ +I+ + DSR + G +F I G DGH F Sbjct: 1 MKLQQLIQYLHRYEVS-------SKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 +A+ +GA AI+ + P++VV +T + +++ A + + ++ Sbjct: 54 QEAVNKGAVAIISEKPLDVA---------VPVIVVPDTMRAMAILADVFFQQPTHKLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ I Q + IG I + + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V V +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF L Sbjct: 165 VENKVDTVVMEVSSHALHMGRVYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSL 224 Query: 238 LPKESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + A D + ++ KRA A + I K V + Sbjct: 225 GNSYNLAKPKYAVLNADDPASDIYKRATAAQVITYGINETS-DIRAKNVKTSAKGTTFDL 283 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + K L G+F VYN L A I ++ +E + VPGRFE Sbjct: 284 VYDNKVVPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFE-AIEAG 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +LK + ++ I + GCGGDRD+ KRP+M +A++ A A Sbjct: 343 QDFTVIVDYAHTPDSLENVLKTTKQLSQNNIYCIVGCGGDRDRSKRPLMAAVAVNYASKA 402 Query: 414 IVTDDNPRSEDP 425 I T DNPRSE+P Sbjct: 403 IFTSDNPRSENP 414 >gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 491 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 132/485 (27%), Positives = 209/485 (43%), Gaps = 26/485 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q E + V+ ++ + G +FVA+ G + DGH FI QA +GA A++ Sbjct: 17 QTPEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLGE------GLP 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141 +++ P L V + R L+ A+ L+G ++ VTGT GK++ + + + + +G Sbjct: 71 TGVQTTLPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAG 130 Query: 142 LSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 L + + TTP L L L G +EASSH L H Sbjct: 131 LPTGLLSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALALH 190 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ G+ A +T+L R+H+D+H + + Y L+ A++ ADD +++++ Sbjct: 191 RVRGVAWDAAIWTHLTREHLDFHGSVEGY----FADKRRLIEAAPFAVLNADDPWTEQLR 246 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A G KV + +F P+ G F V NAL Sbjct: 247 GVAPQEVTYSAEGG--AADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALA 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A +G + + L VPGR + G R+ VD+AHT SLE L+ + Sbjct: 305 AMAAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTPPSLEKALQTL 364 Query: 377 RTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R+ T G++ VV G G+RD KR +G++A AD AI T+++ R + I A + G Sbjct: 365 RSTTGGQLWVVIGSAGGNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAAMERG 424 Query: 436 I-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 F +R EAIR A+ D +++AGKG E + E + Sbjct: 425 AREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKGPEDTLE-RDTETVPWNETREAE 483 Query: 491 EILGL 495 E L L Sbjct: 484 EALAL 488 >gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MEX-5] gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MEX-5] Length = 512 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 215/475 (45%), Gaps = 31/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +F+ G DG FI A+A GA A++ + + Sbjct: 31 LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVAGGAAAVLYQPEGLAAAPAMPVA-- 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V + AS YG ++ + VTGT+GK+S ++ I Sbjct: 86 ---LAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP L ++L+ L+ G V++E SSH L Q R++G Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260 FTNL +DH+DYH+T AY AK +LF A++ DDA +++ R Sbjct: 203 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGCRLLEKLAGRVRT 260 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + + V A + D G F V N L G Sbjct: 261 IAYGIGDAQGPDADRELVALDVRATATGTAFRLRSSWGDAHVEVGTLGAFNVSNLLAVLG 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 +A + + + +L V GR + +G + +DYAHT ++LE L +R Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380 Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD1] gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD1] Length = 513 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 144/473 (30%), Positives = 217/473 (45%), Gaps = 26/473 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D FI A+A+GA A++ +A + Sbjct: 31 LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + AS YG + + VTGT+GK+S ++ IG Sbjct: 86 LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHN 262 TNL +DH+DYH+T +AY AK +LF A++ DDA + ++++ Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRTIAY 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + V A + D D G F V N L G Sbjct: 264 GIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGAL 323 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379 +A + L + +L V GR + +G + +DYAHT ++LE L +R I Sbjct: 324 LAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 383 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +I+ G+ Sbjct: 384 VARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGMT 443 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495 >gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 507 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 137/483 (28%), Positives = 230/483 (47%), Gaps = 35/483 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ D++ + L+ + R + ++ +S ++ G+IF+AI G+KEDG+++ Sbjct: 1 MKITDILK------MGHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYT 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QAI GA I+ + P L V N RK L A + Y +N ++ Sbjct: 55 QQAILNGAILIIGEDDF--------TNLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK+++ F++Q+ ++ G S IG + I+ + TTP+ + + L Sbjct: 107 GITGTNGKTTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQ---LL 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ V +E SS GL Q+RL+GI+ F NL DH+DYH T + YF K LFE+ Sbjct: 164 TASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEK- 222 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + AII +D + K++ +R G +V++VG + V++ + Sbjct: 223 LKLDGTAIINYNDRWGKKLTERLTAQGKKVITVGEEPTNQV---QILAKELNNVSVRYKN 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K+++ PLPG + N +++ + + + V ++ + + GRFE Sbjct: 280 KEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLA-NKVT 338 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++L + + + RII VFG G+RD+ KR M + L+ AI+T Sbjct: 339 VVVDYAHTPDALATSINTAISNGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAILTV 398 Query: 418 --------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 DN S D I+ E +R AI+ AI D +++ GKGH Sbjct: 399 TELFGSTIDNLYS-DYISIQKE-CQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKGH 456 Query: 470 ETV 472 E Sbjct: 457 EQY 459 >gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] Length = 607 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 138/528 (26%), Positives = 233/528 (44%), Gaps = 47/528 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 L++ + ++ Q + ++ +S DSR ++ ++VA+ G K G F Sbjct: 59 LREYLQGLGAQVSAQPASGVQGSESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQF 118 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPEN 116 A+ GA AI+ +A + A P+LV +N R+++ A+ +YG + Sbjct: 119 AEAALKLGASAILTDAAGAQLLGEAP----VPVLVTENLREYVGPLAALIYGSASFPATH 174 Query: 117 ILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174 AVTGT+GK++ ++ + + G+ + IG I + +++TTP ++ L Sbjct: 175 RYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLL 234 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + V ++E SSH +D HR+DG+K FTNL +DH+D H T + YF++K +LF Sbjct: 235 TIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLF 294 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------------GYQGKFIHL 279 + A+I ADD + +++ A + + + Sbjct: 295 TP--ERAELAVITADDEWGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAV 352 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 KV + + + + + A L + DSA L +L Sbjct: 353 VKVQREGLGHRFHVDNGAGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPEL 412 Query: 340 -------HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 VVPGR + + VD+AH + L L+ + G++++VFG G Sbjct: 413 ASGSALTPVVPGRMQLISLAPH---AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATG 469 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGN 444 +RDQ KRPIMG IA ADI +VTDD+P E PE IRA + G + Sbjct: 470 ERDQLKRPIMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISP 529 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 R AI AI + + D +++AG+GHET V + + + R + Sbjct: 530 RAAAIDAAIALAGEHDAILIAGRGHETEQDVDGVDIALDDRVETARAL 577 >gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2M] gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2] gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2] gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2M] Length = 513 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 145/474 (30%), Positives = 216/474 (45%), Gaps = 28/474 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D FI A+A+GA A++ +A + Sbjct: 31 LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + AS YG + + VTGT+GK+S + ++ IG Sbjct: 86 LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCSQWIAAALTALHQPCAIIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH+T +AY AK +LF + A + D + + R ++ Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW---RGLRAAVVNRDDAAGRRLLEKLAGRVRTIA 262 Query: 270 VGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G L V A + D D G F V N L G Sbjct: 263 YGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGA 322 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI 379 +A + L + +L V GR + +G + +DYAHT ++LE L +R I Sbjct: 323 LLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 382 Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +I+ G+ Sbjct: 383 AVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGM 442 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 443 TAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495 >gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] Length = 356 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 161/348 (46%), Positives = 212/348 (60%), Gaps = 1/348 (0%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + LT+P A+ L+ L+ + VTH+++EASSHG+DQ RLDG+ + Sbjct: 6 VVGQKGDKTYALTGPGLTSPDAAEAARLLAELARKEVTHLALEASSHGIDQRRLDGVAIK 65 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTNL +DH+DYH T Y AKMRLFE LLP+ A++ AD + AG Sbjct: 66 AAGFTNLTQDHLDYHGTMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSAFASASIMAGL 125 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V+ VG +G+ + L A Q++T+ V G+ D L PL G FQ NALVAAGLCIA Sbjct: 126 GVMGVGERGRDLTLLARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLCIAG 185 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G D V+ LE + GR + + +RGG +YVDYAHT + LE +L +R +GR+I Sbjct: 186 GEDPDRVIPALELIQGAQGRLQRIPGGARGGEVYVDYAHTPDGLETVLNALRPHATGRLI 245 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 VVFG GGDRD+ KRP+MG+IA LAD AIVTDDNPRSEDP IRA++ G P +E G+R Sbjct: 246 VVFGAGGDRDRAKRPLMGEIAGRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDR 305 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAIR A+ ++ + DV+V+AGKGHE IV G D E L Sbjct: 306 REAIRHAVSLMREGDVVVIAGKGHEQGQIVG-GVVHPFDDAAEATEAL 352 >gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius UCC118] gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactobacillus salivarius UCC118] Length = 510 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%) Query: 14 LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68 L+++ + E+K V+ DSR + +F G+ ++ A+ +GA Sbjct: 11 LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A V Y+ + ++V N +K ++L + YG I+A TGT GK Sbjct: 65 TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117 Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 ++ A F + ++ L S + LTTP + L + + G Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +TH+ +E SS ++R+ G+ G F N+ DHI ++ + + K Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237 Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K A + + + YQ F L K Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D + +PG++ NA A + G + L+++H+ PGR Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G IYVDYAH SL+ + ++ T GR+I V G GD+ +RP GK Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 + D I+T D+P EDP KI EI I + +R AI AI+M D+ Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREIAIEKAIKMSTNNDI 475 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +V+AGKG + + + D ++ ++I Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506 >gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Oceanithermus profundus DSM 14977] gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanithermus profundus DSM 14977] Length = 477 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 219/510 (42%), Gaps = 49/510 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L F + + ++ V+ DSR ++ G+++VA+ G + DGH F Sbjct: 1 MTLRELFA-----------PFGLAAPDVEVRGVTHDSRRVEPGFVYVALPGRRFDGHAF- 48 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENIL 118 A V+ + + P L + T R L+ A+ +G+ E + Sbjct: 49 --------VADAVARGAVAVAGARALSPGVPYLRLPETELRPALARLAAEFHGRPSEKLW 100 Query: 119 AVTGTSGKSSVASFV--QQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKA 173 T + + SG + IG + TTP + Sbjct: 101 VAGVTGTDGKTTTTFLLHHLLASSGRRTGMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGL 160 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + G+TH +EASSH L QHRLD + +T+L +H+D+H + YF AK L Sbjct: 161 LARMVEGGLTHAVLEASSHALAQHRLDAVDFDLAVWTHLSPEHLDFHGDMEGYFRAKALL 220 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + A++ Y+ ++ R H + G L +V Sbjct: 221 ----VERARLAVLNTACPYAMRLVHRPHLSYGP-------GGEFELLEVHEEAAGLAFAF 269 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + F+ P+ G + NAL A G+ L + VPGR + V T Sbjct: 270 ASPEGRFETRLPMLGRYNAENALAALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTE- 328 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R+ VD+AHT L L +R T GR++VV G G+RD GKR +G+ A++LAD+A Sbjct: 329 -PFRVVVDFAHTPKGLAATLSALRPTTEGRLVVVVGSAGERDPGKRAPLGRTAVELADLA 387 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + T+++ RSE E+I AE+ G ++ + +R AI A E+ D +V+A Sbjct: 388 VFTEEDSRSEPVEEILAELARGAEEASGREGKDYLLEPDRGRAIALAFELARPDDTVVLA 447 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKGHE N E + + R++LGL Sbjct: 448 GKGHERTLEREN-ETLPWNEAALARKLLGL 476 >gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] Length = 581 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 136/506 (26%), Positives = 225/506 (44%), Gaps = 44/506 (8%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 ++ +S DSR ++ ++VA+ G K G F A+ GA AI+ +A + Sbjct: 55 SESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLL 114 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQ 138 A P+LV +N R+++ A+ +YG + AVTGT+GK++ ++ + + Sbjct: 115 GEAP----VPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFR 170 Query: 139 RS-GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G+ + IG I + +++TTP ++ L+ + V ++E SSH +D Sbjct: 171 TGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDY 230 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+DG+K FTNL +DH+D H T + YF +K +LF + A+I ADD + +++ Sbjct: 231 HRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTP--ERAELAVITADDEWGEKM 288 Query: 257 MKRAHNAGCRVLSV---------------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A + + + KV + ++ + Sbjct: 289 FSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGVGESV 348 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPGRFEFVGTNSR 354 + + A L + DSA L +L VVPGR + + Sbjct: 349 ECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLAPH 408 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VD+AH + L L+ + G++++VFG G+RDQ KRPIMG IA ADI + Sbjct: 409 ---AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVV 465 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 VTDD+P E PE IRA + G + R AI AI + + D +++AG Sbjct: 466 VTDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDAILIAG 525 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 +GHET V + + + R + Sbjct: 526 RGHETEQDVDGVDIALDDRVETARAL 551 >gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 489 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 125/496 (25%), Positives = 219/496 (44%), Gaps = 25/496 (5%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ K ELI + I +++DSR + G +++ + G DGH + +A+ Sbjct: 2 NLLDKHLSELIAPFHLTCE--VNPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAV 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A GA AI+ + P++++ +T+ A Y + T Sbjct: 60 ANGAVAILAEEPIDGVE--------VPVVLLQDTKHAAGKVADLFYDHPSHKLKVYGITG 111 Query: 125 GKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQG 181 + + +G + I + D TTP I L + L + QG Sbjct: 112 TNGKTTTTKLTYDLFRAAGQKAGMISTIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQG 171 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 VT +E SSH L + R++G+K A +FTNL DH+DYH + + Y AK +F+++ Sbjct: 172 VTDCVLEVSSHALMEGRVEGVKFHAAAFTNLTHDHLDYHASMEEYAQAKALVFKQVATSG 231 Query: 242 SPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A+I D S+ + K A + + + ++ V++ ++G Sbjct: 232 GQAVILNEADPKSRVMEKAAEGVPVIWYATKALSEAP----ITVEWKEETVSVRIDGTVT 287 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G+F N A GL A ++ ++ H+ +L + GR E + G +Y+ Sbjct: 288 EVPVFLLGDFNAANLAAAIGLMQAGNVNMYQLIRHIPELRLPKGRLEQIPFE--GCEVYI 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + LE LK + ++ + +V G+RD+ KR +MG+IA + IVT +P Sbjct: 346 DYAHTPDGLEKCLKAL-SVPGEPLYMVLSAAGERDRSKRAVMGRIAGQYCEGIIVTVHDP 404 Query: 421 RSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R E P++I E++ IP +R EA++ A ++ +V+ GKGHE + Sbjct: 405 RREQPQQIIKELLVEIPPRKIITCHESRKEALQIAAKVALTGKRMVIVGKGHERFEQIGT 464 Query: 478 GEKKMSVDCDIIREIL 493 + I+ + L Sbjct: 465 EHV-PFDEVKILTDEL 479 >gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 510 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%) Query: 14 LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68 L+++ + E+K V+ DSR + +F G+ ++ A+ +GA Sbjct: 11 LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A V Y+ + ++V N +K ++L + YG I+A TGT GK Sbjct: 65 TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAVFYGFPQNELFIIAYTGTKGK 117 Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 ++ A F + ++ L S + LTTP + L + + G Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +TH+ +E SS ++R+ G+ G F N+ DHI ++ + + K Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237 Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K A + + + YQ F L K Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D + +PG++ NA A + G + L+++H+ PGR Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G IYVDYAH SL+ + ++ T GR+I V G GD+ +RP GK Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 + D I+T D+P EDP KI EI I + +R AI AI+M D+ Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +V+AGKG + + + D ++ ++I Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506 >gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] Length = 481 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 119/497 (23%), Positives = 205/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ KD F E+I+ + + + +S DSR + +F A G ++ Sbjct: 9 NILKKDGLFREIIDHENYL-YNYTNVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P++VV+N +K +SL A YG + ILA Sbjct: 66 AISQGLGWYVAEKDYQV---------GIPVIVVNNIKKAMSLIAMVFYGNPQKKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYHILSQRYQTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NNRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ D ++K +K A ++ + Sbjct: 234 ENSRAVVVNSDMDHFNLLKEEVEQKEHDFYGSQSDN--QIKNSKAFRFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + + + + VPGR E + + G ++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIQKGIAE-TRVPGRMEVLTQKN-GAKVI 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL ++ + +G I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLTKLISVVEEHHTGNIALVLGSTGNKGESRRKDFGLLLNKHPEIQVFLTTD 404 Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+TA+ + D +++AGKG + I+ Sbjct: 405 DPNYEDPRAIADEISSYIEHPVKTIIDREEAIKTAMSITSQPLDAVILAGKGADCYQIIN 464 Query: 477 NGEKKMSVDCDIIREIL 493 +++ D I + L Sbjct: 465 GVKEEYPGDAAIAKRYL 481 >gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] Length = 527 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 224/481 (46%), Gaps = 27/481 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ ++H+ G +F A+ G + G F +A+ +GA A++ + + + Sbjct: 58 VTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAVLTDEDGASR----PELRD 113 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LV + R L ++R+YG+ P +A+ G +G S + I G Sbjct: 114 VPVLVHRDPRAALGALSARVYGE-PAQRVALWGVTGTSGKTTTSYMIESCLRAEGRVTGL 172 Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ + RL TTP L L+ + +GV +E SSH L R+ G Sbjct: 173 VGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGAGFA 232 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G+FTNL +DH+D+H + YF AK LF+ +E D + + ++K Sbjct: 233 VGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARREVV---CVDGEWGRRLVKPGTVTVS 289 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 VG +V A + +G + LPG+F V NAL+A G A Sbjct: 290 ATAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGCLHAS 349 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + ++ L ++ V PGR + V VDY+H ++ + L +R +GR+I Sbjct: 350 GVGAEAIVRGLAEVQV-PGRMQRVDVGQ-DFTAVVDYSHKPAAVVLALDAVRARATGRVI 407 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------P 437 V GCGGDRD KRP+MG A +++ +VTDDNPRSEDP IRA ++ G Sbjct: 408 TVLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEAERG 467 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD----IIREIL 493 +E G+R AI A+ + DV+VVAGKGHET V G D D I+E L Sbjct: 468 EVVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHETGQEVA-GVVHPFSDVDALTGAIQEAL 526 Query: 494 G 494 Sbjct: 527 R 527 >gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 511 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%) Query: 1 MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52 M L +I F ELI P + R + ++S DSR ++ G +F G Sbjct: 3 MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 K D ++ A QGA + + YS Q + + P ++V + +K ++ + +G Sbjct: 62 KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119 Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167 N ++ TGT GK++ F + + + G Q+ LTTP Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + + + ++ +E SS + R+ G+ L G F N+ DHI + F Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + E++ ++ + + + ++AH+ G +V+S G + H Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297 Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VT + K + +AA A + VPGR Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVTAQVAPVSEDFRAGLAETTVPGR 357 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 EF+ G VDYAH SL ++ GR+IVV G G + + +R +G+ Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 AD+AI+T ++ EDP +I A+I I I +R AI A M D Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L +A KG ET + D I ++++ Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510 >gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] Length = 511 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%) Query: 1 MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52 M L +I F ELI P + R + ++S DSR ++ G +F G Sbjct: 3 MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 K D ++ A QGA + + YS Q + + P ++V + +K ++ + +G Sbjct: 62 KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119 Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167 N ++ TGT GK++ F + + + G Q+ LTTP Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + + + ++ +E SS + R+ G+ L G F N+ DHI + F Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + E++ ++ + + + ++AH+ G +V+S G + H Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297 Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VT + K + +AA A + VPGR Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 EF+ G VDYAH SL ++ GR+IVV G G + + +R +G+ Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 AD+AI+T ++ EDP +I A+I I I +R AI A M D Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L +A KG ET + D I ++++ Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510 >gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] Length = 516 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 132/504 (26%), Positives = 219/504 (43%), Gaps = 33/504 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 + + P ++ D+R ++ G +F+A+ G G F P AI++GA+A Sbjct: 25 IADAVGGTRHGPAG----QVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKA 80 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ +A P++ V + A+ +G + VTGT+GK++ Sbjct: 81 VLTDAAG----LDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTT 136 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + R G + +G I + + +TTP + + + + + + Sbjct: 137 TTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVL 196 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+D ++ F NL DH+D+H + + YF K LF E I Sbjct: 197 EVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII-- 254 Query: 248 ADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 DD + + + ++ G + G+ + + +GK Sbjct: 255 VDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQ 314 Query: 304 FPLPGEFQVYNALVAAGLC--------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +PG F N +A + + D L VPGR E + R Sbjct: 315 VLMPGRFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR- 373 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VD+AH +L+ +L+ +R T+GR+ +VFG G RD KRPI+G+IA +LAD + Sbjct: 374 --VIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYL 431 Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 TDD+P EDP KIRAE+ G+ ++E R AI+ AI+ QD +V+AG+GHET Sbjct: 432 TDDDPHEEDPGKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTVVIAGRGHET 491 Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495 + G + D R L L Sbjct: 492 LQETPVGAIDL-DDRVEARAALQL 514 >gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] Length = 459 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 221/474 (46%), Gaps = 31/474 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +S ++ I +FVA+ G++ DG + ++G ++ Sbjct: 10 TELTALSDRAQEIGRDGLFVALRGDRADGRQWADAVRSRG-GYVLSDQPGERT------- 61 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +V + R L Y ++ VTGT+GKS+V + + +G Sbjct: 62 -----IVHPDPRAVYPLLLQAYYDYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCC 116 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG I + + TTP P+ L + L +G+ V +E SS L HR+DG+ Sbjct: 117 LIGTGRIVIGDEVRFSPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TNL +DH+DYH+T +AY AK LFE+ L ++ AI+ DD ++ + + H Sbjct: 177 DLAVLTNLKQDHLDYHKTLKAYQRAKFMLFEK-LKEKGTAILNQDDPVTQRWLSQLHR-- 233 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V + G + V + ++ + PL G F + N A A Sbjct: 234 -PVFTYGRDSVNFRIHPVAETLDSITFDLNGHRVE----APLAGAFNMRNLTAALACGFA 288 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + I A +LE + GR E V + VDYAHT+++LE +LK+ R + R Sbjct: 289 LDIPWAAMLEFAHHAALPEGRMEIVCR--QPVLAVVDYAHTASALEAMLKHWRKVADQRH 346 Query: 385 I---VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI- 440 VVFGCGGDR+ KRP+MG+IA AD ++ DDNPR+EDP++I A+I G G Sbjct: 347 TRLSVVFGCGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQK 406 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAI+ ++ D++VVAGKG ET ++ + K D +I G Sbjct: 407 IIRDRAEAIKFVLDGAQTDDIIVVAGKGGETS-LIQDTAKTCPNDRLLIERYFG 459 >gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia vietnamiensis G4] gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia vietnamiensis G4] Length = 512 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 217/475 (45%), Gaps = 31/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +F+ G DG FI A+A+GA A++ + + Sbjct: 31 LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAFA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + AS YG + + VTGT+GK+S ++ I Sbjct: 88 VP-----GLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSCTQWIAAALTALHQPCALI 142 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 143 GTLGSGMPGQLVPTGFTTPDAPQLQRSLARLRDAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260 FTNL +DH+DYH+T AY AK +LF A++ DDA + +++ R Sbjct: 203 AVFTNLTQDHLDYHRTFDAYEAAKAKLFTW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + + V A + + D G F V N L G Sbjct: 261 IAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEVGTLGTFNVSNLLAVLG 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 +A + + + +L V GR + +G + +DYAHT ++L+ L+ +R Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVIDYAHTPDALDKTLEALRP 380 Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I +I+ G Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAG 440 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+++AGKGHE + G+K+ D D Sbjct: 441 MTAPDRARRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRTFSDQD 494 >gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 413 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 109/407 (26%), Positives = 191/407 (46%), Gaps = 13/407 (3%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++VV +T K ++ ++ Y + + VTGT+GK++V + + I + G S G Sbjct: 2 ALVVVKDTFKAMAQLVNKYYDYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALSG 61 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + TT + + + + + ++ +E SSHGL RL G+ Sbjct: 62 TIGFDLDGELFPSENTTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLWGVDFDVV 121 Query: 208 SFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +FTNL DH+DYHQT + Y AK + L A++ +DD + + + Sbjct: 122 TFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTAHEV 181 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 Y + + ++ T+ F+ L G+F VYN L A A Sbjct: 182 ISYGLETYADF--KAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAAMATLFA 239 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ ++ ++ L V GR E V + +Y+DYAHT +++E ++++ +I Sbjct: 240 KGMSVEKLVTIIKDLPPVSGRMEKVH-SDAPLSMYIDYAHTPDAIENAIQSVLPFKENKI 298 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEK 442 I + G GG+RD+ KRP M + A +AD ++T D+PR E + I ++ G+ + Sbjct: 299 IFLVGTGGNRDKSKRPSMAEKAS-IADYVVLTTDDPRYESYDSIVNDLGKGMRHGNYALI 357 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+R EA++ A+++ D+++ AGKGHE I+ N K D +I Sbjct: 358 GDREEAVKHAVDVSEPGDIIIFAGKGHEDYQIIEN-TKYPHSDKEIA 403 >gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Melissococcus plutonius ATCC 35311] gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Melissococcus plutonius ATCC 35311] Length = 510 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 207/505 (40%), Gaps = 28/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F P + ++ ++ +S +S+ I +F G ++ A Sbjct: 14 KEQLLKEFVTKDAWTFRLPNAFNKQFVDHLSYNSQDITKNTLFFC-KGLNFK-KDYLVDA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVT 121 + G + Y + ++V + +K +++ + Y ++ T Sbjct: 72 VQNGLSIYISEQPYDVPADLG--------IIVSDVKKAMAILSMAFYNYPQNKLKVIGFT 123 Query: 122 GTSGKSSVASFVQQ--ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + G ++ ST ++LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFAKSILTNATKGKTAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +TH +E SS R+ + G F N+ DHI + F+ +++ Sbjct: 184 QNNMTHFVMEVSSQAYKIDRVYQLFYDVGIFLNITPDHISPIE--HPTFDDYFYCKRQII 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTI 293 I+ + Y + + + A + G Q + K ++ Sbjct: 242 AHSKQIILNRETDYFQLLKETADYFNVPTIVYGNQPTTEVDYWYQKKSQDSLAFTIVAEK 301 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 D+ L G+F NAL A +G + + + +VPGR E + N Sbjct: 302 DFLFISGDYQLHLAGDFNKSNALSAVIASSLLGANKKDCQTGINE-TIVPGRMELLK-NK 359 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 ++Y+DYAH +SL +L ++ +GR+IVV G G++ +R G + ADI Sbjct: 360 NNAQVYIDYAHNYDSLYHLLSFVKQDHKNGRVIVVIGSTGNKGISRRKDFGAVLSKFADI 419 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 AI+T D+P EDP+ I EI + I + +R +AI+ A+EM D +V+AGKG Sbjct: 420 AILTMDDPADEDPKAICQEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKGA 479 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + + + D +I +E++ Sbjct: 480 DLYQKIKGEDIPYEGDSNIAKELIN 504 >gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha JMP134] gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha JMP134] Length = 520 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 157/487 (32%), Positives = 223/487 (45%), Gaps = 31/487 (6%) Query: 33 VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ D+R + G +F+A V GN DG I QAIA GA AI+ + F T Sbjct: 32 LTGDTRRLARGDVFLAYVLGNERLSTDGRPHIAQAIAAGAGAILYEADG----FDWTFGD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L +++ + A+ YG + +TGT+GK+S + ++ ++ Q +G Sbjct: 88 TVPHLALNSLHQLAGPIAAGWYGNPARGVAVTGMTGTNGKTSCSQWLARLLQATGTPCAT 147 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T Q TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 148 IGTLGTGFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHFS 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----------K 254 TNL +DH+DYH T Y AK RLF + + Sbjct: 208 VAVLTNLTQDHLDYHGTMAEYEAAKARLFRWDGLRTAVINRDDGMGRRLLASNGAAIAAP 267 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V++ + R G +G+++ V A I D P+ G F V N Sbjct: 268 HVIEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSADVATPMIGAFNVSN 327 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRIYVDYAHTSNSLEMI 372 L G +A G+ L L L V GR E G + G VDYAHT ++LE Sbjct: 328 LLAVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAVVDYAHTPDALEKT 387 Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L+ +R + +GR+ VFGCGGDRD KRP+MG +A LAD ++T DNPRSEDP+ I Sbjct: 388 LEALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLADEIVLTSDNPRSEDPQDIL 447 Query: 430 AEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 I G+ +R AI AI+ DV++VAGKGHE +G K+ D Sbjct: 448 DAIADGMADRARGRQIEDRAAAILYAIKHAAGADVVLVAGKGHEATQE-AHGRKRPFSDR 506 Query: 487 DIIREIL 493 + +R L Sbjct: 507 EHVRLAL 513 >gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] Length = 509 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 133/507 (26%), Positives = 214/507 (42%), Gaps = 27/507 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K L+N +++ + + ++ DSR ++ G +FVAI G DGH FI QAI Sbjct: 1 MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA A+VV Y + A ++R L+ A+ Y +P L G + Sbjct: 61 ARGAVAVVVDQRYWDERPVAVPVVVVA-----DSRVALAPLAAAFYD-YPGRELTTIGIT 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLS 178 G ++ Q + +G ST + D R +TP + L + Sbjct: 115 GTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMV 174 Query: 179 SQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF--NAKMRLF 234 + G +EA+SH L RL G N+G +H+DYH T + Y A++ Sbjct: 175 TAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFAL 234 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + A R+ ++ + + + + V ++ Sbjct: 235 LGERSGSRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVT 294 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D PLPG F NAL A + ++ G+ L + GR + Sbjct: 295 SPWGTTDLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRM-VPIDAGQ 353 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAH +S E I +R GR+I VFG G+RD KR I G+IA + D+ + Sbjct: 354 PFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLV 413 Query: 415 VTDDNPRSEDPEKIR--------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +TD++PR ED E I G++ +R +AIR A+ D++++ G Sbjct: 414 LTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLG 473 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE I + + + + R+ L Sbjct: 474 KGHEGSIIYADFSLPWNEERE-ARQAL 499 >gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.4-21] Length = 393 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 123/395 (31%), Positives = 194/395 (49%), Gaps = 13/395 (3%) Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTT 164 Y +N+ + VTGT+GK++++ + Q + G + +G + + TT Sbjct: 2 FFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTT 61 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 S + + +LS G S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Sbjct: 62 GSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSME 121 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKK 281 Y AK RLF EL + ADD + + +A ++ ++ +++ Sbjct: 122 NYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAIN 179 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + +T + PL G F V N L+ ++ G +L + L Sbjct: 180 IHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKG 239 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E + ++ + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+ Sbjct: 240 VCGRMEMIRYPNKPT-VIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPL 298 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNK 458 M ++A A+ IVT DNPR+E +I A+I+ G +R +AI+ AIE + Sbjct: 299 MAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVE 358 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV+++AGKGHE I+ + E D +I + L Sbjct: 359 NDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDFL 392 >gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] Length = 481 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 109/497 (21%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K +F E+I + +++ +++S DSR + +F + G F+ + Sbjct: 9 DILKKDQNFREIIADGDYY-FNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK-REFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+A G + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVAAGLGFYLSETDLEV---------GIPVLLVNDIKQAMSLIAMEFYGHPEQKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ + LTTP + L + ++ + Sbjct: 117 TGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQAVA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + F L+ Sbjct: 177 NARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLMD 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ + + + + ++ N G + + + Sbjct: 235 NSRAVVVNSGMDHFQVLAEQVANYGHDFYGPDSANSILQSQAFSFEAQGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + + + VPGR E + ++ G +++ Sbjct: 287 GSYDIQLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQ-TRVPGRMEVLTQSN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418 VDYAH +SL +L ++ G+ ++V G G++ + +R G + + I+T D Sbjct: 345 VDYAHNGDSLAKLLSVVQEHQKGQTVLVLGATGNKGESRRKDFGLLLNQHPEIKVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+ AI + + D +++AGKG + I+ Sbjct: 405 DPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDAVILAGKGADAYQIIN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + + D + + + Sbjct: 465 DQKVPYPGDYALAEKYI 481 >gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] Length = 532 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 128/527 (24%), Positives = 203/527 (38%), Gaps = 49/527 (9%) Query: 9 KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56 K E I + + ++ IN V DSR + + G F A+ G DG Sbjct: 5 KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 64 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 FI AI GA I + + V++ RK +S ++ LY + Sbjct: 65 KKFINSAIENGAVCIFYEGDLNNHSC-----DEICFVQVNDVRKTMSKVSALLYDEPSRT 119 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLA 171 ++ VTGT GKSS SF+ Q+ G + + TTP + Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L+ + G ++ VEASSHGL RL+ + AG F N+ ++H+++H T + Y Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K LF L ++ + + + LKK+ Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLF 299 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA--------------LVAAGLCIAIGIDSALVLEH 335 I F + Y + G+D A ++E Sbjct: 300 AKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEK 359 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGG 392 L + V GR + + + +DYAHT +S I +I+ G++I +FG GG Sbjct: 360 LPLVKPVKGRMMLI-DEGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGG 418 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRI 446 +RD KRP G+IA +DI I+ D++PR ED ++ I G P +R Sbjct: 419 ERDVKKRPEQGRIAALYSDIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRP 478 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI+ A + K D +++ GKGHE I + + R++L Sbjct: 479 SAIKKAFSLAGKNDAVLLLGKGHENSIIFKD-RTMPYDEETTARKLL 524 >gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] Length = 481 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K+ F E+INQ S + + + + +S DSR ++ +F + G F+ Sbjct: 9 NILKKNGLFREIINQGSYY-YNYSDVDFDSISYDSRKVKERSLFF-VKGASFK-KEFLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI+QG + + Y + P ++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLDWYIAEQDYEV---------GIPAIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGP---IEHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ D V+K ++ A ++ + Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVEDQEHDFYGNQSS--NQIENSKAFGFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIQ-KGIAATRVPGRMEVLTQK-NGAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R +AI+ A+ + +++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADRYQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GVKESYPGDAAVAERYL 481 >gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] Length = 428 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 135/422 (31%), Positives = 210/422 (49%), Gaps = 6/422 (1%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ E+ +S + + ++ + DSR IQ G FVAI+G+ DG LFI + Sbjct: 7 LAKLLKPWISEMAGSVSYLSLD--DIVVSNLELDSRAIQQGDSFVAIIGHTVDGRLFIER 64 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA +++ + + T PI+ + LS+ A+RLY ++ + ++ VTG Sbjct: 65 AVQAGATSVLAQADSEHKHGEVTYIGEVPIIHLYQLDTLLSVIAARLY-QYQQQVIGVTG 123 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+++ + Q G + +G T ++ + TT S I + + L+ L QG Sbjct: 124 TNGKTTITQLIAQWIGLLGDKAAIMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQG 183 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + ++E SSHGL Q R+ + G FTNL RDH+DYH T + Y AK LF E Sbjct: 184 AHYTAMEVSSHGLVQGRVAAVPFKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGH-HCE 242 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + + +R+ V + + V + + + Sbjct: 243 HAVLNIDDVVGRRWLSERSDAIAVSVEGRQEGERGLWATTVKYSDSGISLEFDGYFGQGN 302 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G+F N ++A +A+G D + + KL V GR E T S+ +I VD Sbjct: 303 LQAPLIGQFNASNLMLAFASLLALGFDIEHLQQTAPKLQPVLGRMELFQTTSKP-KIVVD 361 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE L +R G++ V+ GCGGDRD+GKRP+M IA LAD I++DDNPR Sbjct: 362 YAHTPDALEKALLALRVHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLADHVILSDDNPR 421 Query: 422 SE 423 SE Sbjct: 422 SE 423 >gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] Length = 410 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 127/430 (29%), Positives = 198/430 (46%), Gaps = 29/430 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ADDA S + K Q + + Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +F + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400 Query: 412 IAIVTDDNPR 421 I T +NPR Sbjct: 401 NPIFTSNNPR 410 >gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] Length = 528 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 138/485 (28%), Positives = 206/485 (42%), Gaps = 24/485 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--------YSLQD 81 I V+ DSR ++ G FVA+ G K DG F A+A GA +V Q Sbjct: 48 IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ--IC 137 P++VV N R+ L L A+ + G + +TGT+GK++ + + Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167 Query: 138 QRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 I + TTP + + L + G + +E SSHGL+ Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLEL 227 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+ G++ + FTNL RDH+D H + YF K +LFE + D Sbjct: 228 HRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTEGP----RLANVDDDYGRR 283 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + R I + Q + + PL G++ N Sbjct: 284 LAREFPGSLTFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYNALNVA 343 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKN 375 A + + G D V++ ++ L VPGRF+ + G VDYAHT LEM+L Sbjct: 344 GAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAHTEVGLEMVLTV 403 Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R I GR+I V+G G+RD KRP+MG++ +AD+ I+T D+P EDP I E+ Sbjct: 404 ARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPYGEDPVTIADEV 463 Query: 433 IHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + G +R EA+ A+ M + D+L+ GKG E + G+ D IR Sbjct: 464 MAGADPADTHIVVDRREALLEAVAMARENDLLIACGKGDEPFQHLPEGDVDHH-DPTSIR 522 Query: 491 EILGL 495 E L L Sbjct: 523 EGLSL 527 >gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] Length = 562 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 155/554 (27%), Positives = 248/554 (44%), Gaps = 78/554 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L E+I + ++ ++ DSR +++ +F A+ G + G F Q Sbjct: 5 LKKLAEIARGEIIGDGT--------VTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQ 56 Query: 63 AIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+A++ +A L + PI+VVD+ R L ++ +YG +N +L Sbjct: 57 ---TSAKAVLTDAAGVDILNGSDTAESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVL 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 VTGTSGK++ ++ +G S+ IG T T + D +LTTP L + + + Sbjct: 114 GVTGTSGKTTTTYLLESGLLAAGYSTGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARM 173 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GVTHV +E SSH LD R+ G+ G FTNL +DH+D+H T + YF+AK +LF Sbjct: 174 VDEGVTHVVMEVSSHALDLGRVQGVDFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGN 233 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------ 291 A++ +D + + + + + V G +H ++ ++ Sbjct: 234 -NAARHAVVCINDDWGERLADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTR 292 Query: 292 -----------------------------------TISVEGKDFDFLFPLPGEFQVYNAL 316 + + FDF PLPG+F + NA Sbjct: 293 ELLVPGTVVAWQQSVETTGEQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAG 352 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A G+ A GID + L K+ V PGR + + + VDYAH ++E +L+ + Sbjct: 353 LAVGMASAAGIDLDTFITALTKVAV-PGRMQRI-DEGQDFVAVVDYAHKPAAIEAVLETL 410 Query: 377 RTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 R+ GR+ VV G GGDRD KR +MG A AD +VTDDNPR+EDP IR Sbjct: 411 RSQLESAGNTAQGRLGVVVGAGGDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIR 470 Query: 430 AEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 ++ G +E +R +AI + + D ++V GKGHE ++ G Sbjct: 471 EAVMAGAREAAEESNRPVEIVEIASRADAIDAVVNWAHDGDAVIVVGKGHEVGQLIG-GT 529 Query: 480 KKMSVDCDIIREIL 493 D + + L Sbjct: 530 MHHFDDREELSRAL 543 >gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 468 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 134/478 (28%), Positives = 225/478 (47%), Gaps = 23/478 (4%) Query: 19 SIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 ++ + + +I +S D+R ++ W+FV G+ DG F+ +A+ +GA ++ Sbjct: 3 ALLHIDCEDARILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGAV-VLCDQML 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 +Q + + + +RL+ ++ +TGT+GK+SVAS + Q+ Sbjct: 62 PMQH--VYYTPHVERITQALLELYYGDLCTRLH------VIGITGTNGKTSVASIISQLL 113 Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G QIG S + TTP LA + +THV +E SSH +DQ Sbjct: 114 KMEGCRVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQ 173 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +R+ + +TN+ +DH+DYH T+ Y K +L L P+ + ++ + Sbjct: 174 NRISFLHFDDIVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGTIVY----NSDLSYM 229 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + A +S+G Q L V +S + +DF L G VYN Sbjct: 230 QELVNLAQHACISIGMQAAHFPLHHVELS----DHDLSFRLQGYDFHARLLGMVNVYNLA 285 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G + + EKL V GR E G I++DYAHT+ ++E +L Sbjct: 286 EAIVVVHRLGFSYERLRKDCEKLLPVSGRMEV--MEVGGFTIWIDYAHTAAAVEELLVFA 343 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HG 435 ++ GRI+ + GCGG+RD+ KRP M IA +D+A+ T DNPR E ++I A++ Sbjct: 344 NSVKKGRILTILGCGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADMKCES 403 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P NR AI+ I++ D++++AGKG E I G++ D ++E L Sbjct: 404 FPNAAVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGQEYPFSDRSCVKERL 460 >gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. 383] gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. 383] Length = 512 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 216/472 (45%), Gaps = 25/472 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D FI A+A+GA A++ + + P Sbjct: 31 LHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALAVPA 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + AS YG ++ + VTGT+GK+S ++ IG Sbjct: 91 -----LDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 146 GTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263 TNL +DH+DYH T AY AK +LF A+I DDA + +++ R Sbjct: 206 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGQRLLEKLAGRVRTIAY 263 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G S + + V A + D D G F V N L G + Sbjct: 264 GIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGSLL 323 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 A + L + +L V GR + +G + +DYAHT ++LE L +R I Sbjct: 324 AADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAT 383 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR++ +FGCGGDRD KRP+MG IA AD +VT DNPRSEDP++I +I+ G+ Sbjct: 384 ARGGRLVCMFGCGGDRDATKRPLMGAIAERFADETVVTSDNPRSEDPQRIIDQIVAGMTA 443 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 PDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494 >gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] Length = 564 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 144/496 (29%), Positives = 225/496 (45%), Gaps = 22/496 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL L + +I ++ DSR ++ G ++ A+ G + G F QA A GA A Sbjct: 66 LGELATLLGLPESGAA--QITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAA 123 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+L V + R + A+ +YG+ E L +TGTSGK++ Sbjct: 124 VLTDPEGAER----AAATGLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTT 179 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G ++ +G + TTP L + + +GV V++ Sbjct: 180 TAYLVEGGLRAAGRTTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF E + + Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHTGMEDYFQAKAQLFTERRARLGVVNL- 298 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306 DD Y + + K A + G + V + H +T+ PL Sbjct: 299 -DDEYGRRLAKEASIPVVTFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPL 357 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N + A A G+D + + + VPGR E V VDYAH + Sbjct: 358 PGPFNVANTVAAIVTLAAAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++E +L+ +R +T+G++ +V GCGGDRD KR MG A AD A++T DNPRSEDP Sbjct: 417 DAVESVLRALREVTTGKLHIVLGCGGDRDTTKRAPMGAAAARYADTAVLTSDNPRSEDPL 476 Query: 427 KIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 KI A + G + +R AI A+ D ++VAGKGHE G Sbjct: 477 KILAAMFEGAVSVPAEERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQDTA-G 535 Query: 479 EKKMSVDCDIIREILG 494 + D ++R + Sbjct: 536 VVRPFDDRAVLRAAIE 551 >gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ubonensis Bu] Length = 512 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 144/472 (30%), Positives = 216/472 (45%), Gaps = 25/472 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +F+A + D FI A+A+GA A++ +A + P Sbjct: 31 LHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAAVLYQPDGLAAAPAAPVALAVPA 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + AS YG +++ AV TGT+GK+S ++ IG Sbjct: 91 -----LNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWIAAALTALDRPCALIGTL 145 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263 TNL +DH+DYH+T AY AK +LF A++ DDA ++ R Sbjct: 206 TNLTQDHLDYHRTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGSRLLASLSGQVRTIAY 263 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + V A + D D G F V N L G + Sbjct: 264 GIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVGTLGTFNVSNLLAVLGTLL 323 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTITS 381 A + L + +L V GR + +G + +DYAHT ++LE L +R I Sbjct: 324 AADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAV 383 Query: 382 GR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I +I+ G+ Sbjct: 384 ARGGALVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAGMTA 443 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 PDNARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC 484] gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC 484] Length = 526 Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 143/498 (28%), Positives = 222/498 (44%), Gaps = 27/498 (5%) Query: 11 FPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +++ ++ P + + + V+ S + G +FVA+ G + G + QA+ GA Sbjct: 17 LADVVETFALSPDRPLDAALVTTGVTVASTDVAPGDLFVAVPGMRVHGATYAAQAVDAGA 76 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A+V +A + P+LV + R A+ + + ++ V T Sbjct: 77 VAVVTDAAGA----ELAGDLGVPVLVAPDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGK 132 Query: 129 VA--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 FV + + ++ +G + A ++ TT L L+ +G V Sbjct: 133 TTTTYFVDAALRAAHRTTAVLGTVELRVGDEAVESPRTTVEAPALQGILALARERGAGAV 192 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH L R+ G+ FTNL RDH+D+H + YF K RLF + + Sbjct: 193 AMEVSSHALALGRVRGLTFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV 252 Query: 246 IYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 DD + + + + + T+ Sbjct: 253 --VDDEWGRRLAATSPVPVETVATHVGDPHGADADWAVVAADIGLDGVGSTFTLRGPDGT 310 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PLPG V NA +A L G+D A ++ + H +PGR E V G + Sbjct: 311 EHAAASPLPGLVNVSNAALAIVLAHTAGVDLATAVDAVAHAHEIPGRMERVVERGDGLPL 370 Query: 359 Y-VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L + L+ +R IT GR+I+VFG GDRDQGKRPIMG+IA LAD+ +VTD Sbjct: 371 CLVDYAHTPDALVLALEAVRPITPGRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTD 430 Query: 418 DNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +NPRSEDP IRA I+ G+ E +R +AIR A+ + QD ++V GKGHE Sbjct: 431 ENPRSEDPAVIRAAILEGVRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGKGHE 490 Query: 471 TVHIVTNGEKKMSVDCDI 488 + G D D+ Sbjct: 491 PTQEIA-GVFHRYNDRDV 507 >gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri NRRL B-30929] gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri NRRL B-30929] Length = 511 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 110/492 (22%), Positives = 191/492 (38%), Gaps = 40/492 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++S +S+ + +F G ++ A GA A + Sbjct: 29 HPFDQISYNSKSVTDNCLFFC-KG-NFKSA-YLDDARQNGATAYMSEK--------TYQN 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV-----QQICQRS 140 + P ++V N +K +SL ++ +G + +A TGT GK++ A F Q ++ Sbjct: 78 AGIPGIIVKNIQKAMSLVSAAFFGFPQDQLPTIAYTGTKGKTTSAYFTKAILDQTYQRKV 137 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 LSS + LTTP + L + + G++H+ +E SS ++R+ Sbjct: 138 ALSSTINTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRVY 197 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G F N+ DHI ++ + + +A Sbjct: 198 GLHYDVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSDVCVLNADGTHLTDIFYAAKA 257 Query: 261 HNAGCRVLSVGYQGKFIH---------------LKKVCAIHNKQQVTISVEGKDFDFLFP 305 + G G+ L + + D + Sbjct: 258 TTQPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDGVYRIG 317 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG++ NA+ AA +G + L VPGR E T+ G +YVDYAH Sbjct: 318 IPGDYNEGNAVAAAITSALMGAKPTEIAYGLAN-TTVPGRMEIYQTHDHGT-VYVDYAHN 375 Query: 366 SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SL +L ++ +G++ V+ G GD+ +R +GK + AD A +T D+P +ED Sbjct: 376 YGSLHSVLDFLKKQAPNGKVTVITGSTGDKGIDRREGLGKAINEAADQAYLTTDDPATED 435 Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P++I EI I +R +AI A+ K D++VVAGKGH+ + Sbjct: 436 PQQIAKEIAAHIDTSKVATTYIPDRKQAITKAVSESQKGDLVVVAGKGHDQYQKINGKNV 495 Query: 481 KMSVDCDIIREI 492 D I++ + Sbjct: 496 PYEGDAAIVKNL 507 >gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria IOP40-10] gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria IOP40-10] Length = 512 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +F+ G DG FI A+A+GA A++ + + Sbjct: 31 LHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + AS YG ++ + VTGT+GK+S ++ I Sbjct: 88 VPA-----LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260 FTNL +DH+DYH T AY AK +LF A++ DDA + +++ R Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + + V A +S D D G F V N L G Sbjct: 261 IAYGIGDAQTPDADRELVALDVRATATGTAFRLSSSWGDADVEVGTLGAFNVSNLLAVLG 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 +A + + + +L V GR + +G + +DYAHT ++LE L +R Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380 Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 516 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 215/492 (43%), Gaps = 40/492 (8%) Query: 36 DSRHIQAGWIFVAIV---GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 DSR IQ+G IF A G DG FI A+A GA A+V A + + Sbjct: 29 DSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANGAAAVVFDPAG----IDPQFQDHPQ 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V++ + + F ++ Y + ++ VTGT+GK+S+ ++ Q + +G Sbjct: 85 CFAVESLAEKVGEFCAQWYDYPSKQLKVIGVTGTNGKTSITQWLAQALDEPNHRTAVLGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + TTP L L L G V++E SSH L Q R+ G Sbjct: 145 LGTGFPTALVMTGYTTPDAPKLQTQLRELLDGGAQQVAMEVSSHALHQERIAGTWFNCAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------MKR 259 FTNL +DH+DYH + A+ + A+I DD + +E+ ++ Sbjct: 205 FTNLTQDHLDYHGSM--GDYAEAKAKLFQQAGLEHAVINLDDPFGRELAINLLAKDSIQV 262 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHN------KQQVTISVEGKDFDFLFPLPGEFQVY 313 G++ L+++ Q + + + PL GEF + Sbjct: 263 WAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVYGDKGTYPLHIPLLGEFNLS 322 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSL 369 NAL + + G+ + + L V GR E + S G VDYAHT ++L Sbjct: 323 NALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKNQKSEGLLAVVDYAHTPDAL 382 Query: 370 EMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + L+ +R + G++ VFGCGGDRD KRP MG +A AD I+T DN RSEDP+ Sbjct: 383 QKTLQALRPLAEQRGGKLWCVFGCGGDRDITKRPQMGLVAEKFADHIIITSDNSRSEDPQ 442 Query: 427 KIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I I G+ +R AI A+ + +D+++VAGKGHET + NG+ Sbjct: 443 AIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADARDIVLVAGKGHETSQEI-NGKTFD 501 Query: 483 SVDCDIIREILG 494 D + IR G Sbjct: 502 FSDQEHIRLAAG 513 >gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 481 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 212/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+++ + ++ +S DSR + +F A G ++ + Sbjct: 9 NILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADYLKE 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AIA+G V Y L + P+++V + +K +SL A Y + +L Sbjct: 66 AIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLIAMAFYDNPQDQLKLLGF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + S + T+ ++LTTP + L ++ Sbjct: 117 TGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQLTTPESLDLFAMMAECVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ + ++ + L ++ + Sbjct: 234 ENSRAVVINSGMDHFPFLA-------NQVANQEHAFYGALSDNQITTSQAFSFEANGQLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G A + + + K VPGR E + + +++ Sbjct: 287 GHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-AKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SLE +L + +G ++++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAVINQHPNLTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476 +P EDPE I EI I I+ +R +AI+ A+ + +D +++AGKG + IV Sbjct: 405 DPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIVK 464 Query: 477 NGEKKMSVDCDIIREIL 493 + + D + + L Sbjct: 465 GEKAPYAGDLAVAQRYL 481 >gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia PC184] gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia PC184] Length = 515 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 219/473 (46%), Gaps = 24/473 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D F+ A+A+GA A++ A P+ Sbjct: 31 LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPA---VPV 87 Query: 93 -LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS YG +++LAV TGT+GK+S ++ IG Sbjct: 88 ALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + TTP L ++L+ L G V++E SSH L Q R +G Sbjct: 148 LGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVAV 207 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHN 262 FTNL +DH+DYH T AY AK +LF A+I DDA + +++ R Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIA 265 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + + V A + D + G F V N L G Sbjct: 266 YGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGAL 325 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379 +A + L +E+L V GR + +G + +DYAHT ++LE L +R I Sbjct: 326 LAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 385 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +++ G+ Sbjct: 386 AARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMT 445 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 446 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497 >gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] Length = 481 Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 126/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A++ D V+K ++ A ++ + Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGILLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N++ D +++AGKG + IV Sbjct: 405 DPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GKKEDYPGDAAIAECYL 481 >gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] Length = 481 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLVWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium variabile DSM 44702] Length = 549 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 145/518 (27%), Positives = 220/518 (42%), Gaps = 41/518 (7%) Query: 2 KLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +L +L ++ + + ++ + + D+R + A +F+A+ G + G F Sbjct: 19 QLAELTGGRLVDVAGTAAGVASAEQGQQTVATAAIDARDVPADGLFMAVPGTRAHGARFA 78 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + G ++ LVVD+ R++L A+ ++G ++ + Sbjct: 79 GQ--SAGHS-VLTDEEG--LGVLVDGSWQGTALVVDDCRQWLGPVAAEIHGHPSRDMTVI 133 Query: 121 TGTSGKSSVASFVQQICQRSGLSSF-QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178 T + G IG T T LTTP L + + Sbjct: 134 GVTGTSGKTTTTYMMERALLGHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARMR 193 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GVTHV +E SSH L R+ G+ FTNL +DH+D+H T + YF+AK LF E Sbjct: 194 DEGVTHVVMEVSSHALVLGRVRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTEPQ 253 Query: 239 PKE---SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ DD + + + R +A V + G + Q VT+ Sbjct: 254 DPAGELPVPVVCVDDEWGRRLAGRTGDATVTVSTDGEAATWQVSDVAVHPDGTQHVTVDR 313 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GT 351 ++ +PG F V NA +A +A G D+++ E E VPGR E + Sbjct: 314 ADGQVEYDLSIPGAFNVANATLALATLVAAGEDASIADELAEV--SVPGRMEKISGSSPQ 371 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-----------TSGRIIVVFGCGGDRDQGKRP 400 + VDYAH ++ +L + T GR+ VV G GG+RD KRP Sbjct: 372 TAVDFLALVDYAHKPGAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRP 431 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------------PGFIEKGNRIEA 448 MG A +AD+ IVTDDNPR EDP IRA ++ G P E G+R EA Sbjct: 432 KMGAAAAAVADLVIVTDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEA 491 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 IR A+ DV+VVAGKGHE+ I+ + D Sbjct: 492 IRDAVGWARSGDVVVVAGKGHESGQIIGDTVVD-FDDR 528 >gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 516 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 130/483 (26%), Positives = 216/483 (44%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ D+R ++ G +FVA+ G G F A ++GA A++ A + Sbjct: 39 RVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAG----MAFLTDL 94 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V + A+ + + + VTGT+GK++ ++ + R G S Sbjct: 95 DIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSL 154 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + + +TTP L + + V H+ VE SSH L R+D + Sbjct: 155 VGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFA 214 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264 FTNL +DH+DYH T + YF K LF + I+ E ++R+ Sbjct: 215 CVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHD 274 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC- 322 LS+ + K + ++ + +GK+ +PG F NA +A + Sbjct: 275 FVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVV 334 Query: 323 -------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + D L VPGR E + R+ VD+AH +S +++L Sbjct: 335 TGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDT 391 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ G Sbjct: 392 MRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAG 451 Query: 436 IPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + G+ +E R AI AI +D +V+ G+GHE++ G+ + D + RE Sbjct: 452 MKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVARE 510 Query: 492 ILG 494 L Sbjct: 511 ALS 513 >gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium smegmatis str. MC2 155] gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium smegmatis str. MC2 155] Length = 520 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 210/474 (44%), Gaps = 14/474 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ + Q G +F A+ G G F A+A GA A++ + + + Sbjct: 42 VTGVTLRGQDAQPGDLFAALPGASAHGARFAADAVAAGAVAVLTDPSGAD---LLAGTLD 98 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LV R L A+ +YG+ E ++ VTGTSGK++ + + +G + I Sbjct: 99 VPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGLI 158 Query: 148 GPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + LTTP L L+ + +GV V +E SSH L Q R+DGI Sbjct: 159 GTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFAV 218 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+D+H T YF AK RLF+ P + A + D M Sbjct: 219 GGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETPLT 278 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V + G + K A Q+ + G L A + Sbjct: 279 VSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLDAV 338 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 S + VPGR E + VDYAH +L+ +L+ +R RI V Sbjct: 339 GVSPEQAAPGLRTATVPGRLE-SIDLGQDFLALVDYAHKPGALQAVLETLRAAEPRRIAV 397 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF------I 440 VFG GGDRD GKR MG++ +LAD+ +VTDDNPRSEDP IR+ I+ G + Sbjct: 398 VFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVASDAEIV 457 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E G+R AI A+ D++++AGKGHE+ V + + D D + L Sbjct: 458 EIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGDHTR-PFDDRDELAAALE 510 >gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae OXC141] Length = 481 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLCLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium accolens ATCC 49725] gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium accolens ATCC 49725] Length = 511 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 157/499 (31%), Positives = 240/499 (48%), Gaps = 24/499 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L + +++ DS + G +F A+ G + G F+ A A Sbjct: 5 LEKLAQLSHGRVIGDGTVEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD---TKAGA 61 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 ++ + D PI+VVD+ R L A+ +YG +L +TGTSGK++ Sbjct: 62 VLTDAPG--LDHLRQANETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGITGTSGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ ++G S IG T T + LTTP L + + + +GVTHV + Sbjct: 120 TSYLLEAGLLQAGHSVGLIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVM 179 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L+ R+ G F+NL +DH+D+H T + YF+AK RLF + A+I Sbjct: 180 EVSSHALELGRVRGTNFAVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQ-RAVIC 238 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLF 304 DD + + + +AG V +V + + Q+V ++++G D+ F Sbjct: 239 VDDEWGERLRGMVKDAGAPVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRL 298 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPGEF + NA +A G+ A+G D + L +E + V PGR E + VDYAH Sbjct: 299 PLPGEFNIANAALALGMATAVGEDPQVFLTGVENVAV-PGRMERIDRGQ-DFVAVVDYAH 356 Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 ++ +L +R TSGR+ VV G GGDRD KRPIMG+ A AD+ +VTDDNPR Sbjct: 357 KPAAIAAVLDTLRLQLEGTSGRVGVVVGAGGDRDSTKRPIMGEAAATRADLTVVTDDNPR 416 Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP IRA +I G E+G+R AI ++ D ++V GKGHE +V Sbjct: 417 TEDPAAIRAAVIEGARRAAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKGHEVGQLV 476 Query: 476 TNGEKKMSVDCDIIREILG 494 D + + + Sbjct: 477 GE-RTLHFDDREEMARAIE 494 >gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae COH1] gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae COH1] Length = 483 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 208/500 (41%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K + + V + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGD------YSENVITESQAFSFHVKGK 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 ++ + L G+F NAL A C+ +G+ + + + VPGR E + + G Sbjct: 286 LEN-TYNINLIGKFNQENALAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N + D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae INV200] gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA41301] Length = 481 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759] gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759] Length = 507 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 110/517 (21%), Positives = 203/517 (39%), Gaps = 40/517 (7%) Query: 1 MKLQDLIYKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK ++L ++++Q + + ++ ++ +S+ + G FV G Sbjct: 1 MK-ENLQLTTLLDILDQQKLVTDYSEDCKDISPTHITINSKDVVPGTFFVC-KGASFK-E 57 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 ++ AI+QGA + Y + P ++V + RK ++L A +G +N+ Sbjct: 58 EYLKSAISQGAIVYLSQQKYD--------GVDIPYIIVSDIRKAMALAARWFFGNPGDNL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKA 173 V T K + + ST + + LTTP PI L Sbjct: 110 TKVGITGTKGKTTVTFVMKDILDKYTDNRCAAFSTHEIDVGTKVFETTLTTPEPIELQTY 169 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 ++G TH +E SS + +R+ G G FTN+ DHI T+ A + Sbjct: 170 FDMAVNEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHIS--PTEHASMEDYLGC 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------------SVGYQGKFIH 278 L + ++Y+D Y + + + V +F Sbjct: 228 KVSFLKQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESVEKLMSRDDDFFEKDTEFAS 287 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + + + G++ + L G++ V N + A + IGI + + + Sbjct: 288 IHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNEQIRSSIRD 347 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG 397 ++V PGR + +DYAH S+ + + ++ + I VVFGCGG+R + Sbjct: 348 IYV-PGRLQVYHWK--DRTFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFGCGGERYKK 404 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEML 456 +R MG++A AD ++T ++P E E I EI I +R EA+ A++ Sbjct: 405 RREDMGRLAEQYADKVVLTMEDPGFESCEDICKEIKQYITKPCYIIVDREEALTRALDEA 464 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++++ GKG E+ + + D +I L Sbjct: 465 QPGELVITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501 >gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae JJA] gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae JJA] Length = 481 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVKDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] Length = 584 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 138/516 (26%), Positives = 221/516 (42%), Gaps = 52/516 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + DSR + F + + + ++ QA A A I+ + Sbjct: 68 NIPFQQFCLDSRQLIRNEAFALLKSHTPNCQKSRDYLYQA-ANNAAFILSEIDPLALIAT 126 Query: 84 ATIRSN----------------------TPILVVDNTRKFLSLFASRLYGKHPE----NI 117 I + P+L V N R FL + Sbjct: 127 GNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSLIQARLQYQQRVTLPTV 186 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSY 176 +AVTGT+GK++++ V Q+ Q +G+SS +G TT + + + L Sbjct: 187 VAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQASHTTGDTLAVQQFLHQ 246 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +G +++EASSHGLDQ RL G+ + +TNL RDH+DYH Y AK +LF++ Sbjct: 247 MGKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDK 306 Query: 237 -LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVT 292 P + AII DD Y++ ++ AH + +V + + + +++ Sbjct: 307 AHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSKTATFVAADITPSLHGVEIS 366 Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + + D + A L GID ++ + +L Sbjct: 367 LCTDFGDGKVNHLDIVSPLLGRFNVANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGAV 426 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR + V +N G VDYAHT ++L +L +++T G++ VFGCGGDRD GKRP+M Sbjct: 427 GRMQRVPSN--DGCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDTGKRPLMA 484 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNK 458 + L AD I+T DNPR+EDP I ++ G+ + R AI A+ Sbjct: 485 QAGLAGADKVILTADNPRTEDPNVILQDMQAGMSTEQYQRTHIESARQTAIEYAVSQAAA 544 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 D++V+AGKGHET + N + D I++ L Sbjct: 545 DDIVVIAGKGHETYQEINN-IRYDFDDSVILQNALE 579 >gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria MC40-6] gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MC40-6] Length = 512 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R +QAG +F+ G DG FI A+A+GA A++ + + Sbjct: 31 LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + AS YG +++ + VTGT+GK+S ++ I Sbjct: 88 VPA-----LDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260 FTNL +DH+DYH T AY AK +LF AI+ DDA +++ R Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAIVNRDDAAGCRLLEKLAGRVRT 260 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + + VCA + D D G F V N L G Sbjct: 261 IAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLG 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 +A + + + +L V GR + +G + +DYAHT ++LE L +R Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380 Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 441 MTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae TIGR4] gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae TIGR4] gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TIGR4] Length = 481 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++S A+I D V+K ++ A ++ + Sbjct: 234 EKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae 70585] gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae 70585] Length = 481 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ +DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISQDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQNHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F N++ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENSVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] Length = 481 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 120/504 (23%), Positives = 217/504 (43%), Gaps = 35/504 (6%) Query: 1 MKLQ---DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 MK++ +++ + +F E++ + N++S DSR + A +F + G Sbjct: 2 MKIETVLNILKEDHNFREILQD-GEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFK 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 F+ QAI QG + V + + + P ++V + ++ +SL A YG Sbjct: 60 -KEFLEQAIEQGLQWYVAEQDFEV---------SIPAIIVTDIKQAMSLIAMEFYGHPER 109 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAK 172 +LA TGT GK++ A + +I ++ + T+ + LTTP I L + Sbjct: 110 QLKLLAFTGTKGKTTSAYYAYKILEQGHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLFE 169 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + TH+ +E SS R+ G+ G F N+ DHI + Sbjct: 170 MMAQAVANDRTHLIMEVSSQAYLVKRVYGLIFDVGVFLNISPDHIGPI---EHPTFEDYF 226 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + LL + S A++ D +++ G + K + ++ Sbjct: 227 YHKRLLMENSRAVVVNSDMDHFDILAEEVAEQDHDFYGSQSGNQVQNSKAFSFSVTGKLA 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 D+ L G F NA+ A C+ +G + + + K VPGR E + Sbjct: 287 -------GDYQTQLIGRFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQK 338 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + G ++++DYAH +SL+ +L + T +G I +V G G++ + +R G + D +I Sbjct: 339 N-GAKVFIDYAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEI 397 Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469 +T D+P EDP I EI I +E +R +AI+ A+ +D +++AGKG Sbjct: 398 QVFLTADDPNYEDPLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIAGKGA 457 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + IV +++ D I L Sbjct: 458 DCYQIVNGVKEEYPGDAAIAERYL 481 >gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] Length = 516 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 130/483 (26%), Positives = 216/483 (44%), Gaps = 25/483 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ D+R ++ G +FVA+ G G F A ++GA A++ A + Sbjct: 39 RVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAG----MAFLTDL 94 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V + A+ + + + VTGT+GK++ ++ + R G S Sbjct: 95 DIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSL 154 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + + +TTP L + + V H+ VE SSH L R+D + Sbjct: 155 VGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFA 214 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264 FTNL +DH+DYH T + YF K LF + I+ E ++R+ Sbjct: 215 CVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHD 274 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC- 322 LS+ + K + ++ + +GK+ +PG F NA +A + Sbjct: 275 FVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVV 334 Query: 323 -------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + D L VPGR E + R+ VD+AH +S +++L Sbjct: 335 TGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDT 391 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ G Sbjct: 392 MRISTKGRLLLVMGADGQRDSGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAG 451 Query: 436 IPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + G+ +E R AI AI +D +V+ G+GHE++ G+ + D + RE Sbjct: 452 MKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVARE 510 Query: 492 ILG 494 L Sbjct: 511 ALS 513 >gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae Taiwan19F-14] gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae Taiwan19F-14] gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA04375] Length = 481 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +H+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] Length = 481 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 125/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR ++ +F A G F+ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK-KEFLIS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLGWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVENQDHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + IV Sbjct: 405 DPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKEAYPGDAAVAENYL 481 >gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] Length = 481 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + + DSR + +F + G F+ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFK-KEFLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI G V Y + + P++VV++ +K +SL A YG E + LA Sbjct: 66 AIEHGLSWYVAEQDYEV---------DIPVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVD 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A++ D V+K I K + ++ + + Sbjct: 234 KNSRAVVINSDMDYFSVLKEQVENQEHDFYGSQSDNQIENSKAFSFSATGKLVGDYDIQ- 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + + + VPGR E + + G +++ Sbjct: 293 ------LIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLDQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R +AI+ A+ + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAGKGADCYQIIN 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GIKEDYPGDAAVAERYL 481 >gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10394] gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes str. Manfredo] gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10394] gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pyogenes str. Manfredo] Length = 481 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQEHMFYGP-------LSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella paurometabola DSM 20162] gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella paurometabola DSM 20162] Length = 522 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 146/480 (30%), Positives = 220/480 (45%), Gaps = 23/480 (4%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + ++ + G +F + G G F +A+A GA A++ SA + A + + Sbjct: 42 SGATIRAQDARPGDLFCGVPGTSTHGARFAAEAVAAGAVAVLTDSAGAAVLAEAGV--DV 99 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+ D+ R L A+ +YG + + G +G S + + G + G Sbjct: 100 PVLLHDDPRSVLGPAAAVIYGAPSTK-MTLVGITGTSGKTTTSFLVEAALGATQATTGLI 158 Query: 151 STISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+ + LTTP L + + QGVT +E SSH L Q+R+ G + Sbjct: 159 GTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVTSAVMEVSSHALAQNRVGGTRFAV 218 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G+FTNL +DH+DYH T + YF AK P A+I DD + + + Sbjct: 219 GAFTNLSQDHLDYHPTMEDYFAAKALLFVPDESGDGPVCEQAVICVDDEWGNRMADLRRD 278 Query: 263 AGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG V + G A ++ G+ F LPG + V NA +A Sbjct: 279 AGLPLVTVATTGPADWTAGAVSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVANAALAL 338 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + G+ A + VPGR + + VDYAH +L+ ++ +R Sbjct: 339 VVAHEAGVPLADAV-RGIGAVAVPGRVQRIDRGQ-DFLAVVDYAHKPAALDAVIATLRGQ 396 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 T+GRI VV G GGDRD+GKRP+MG++A A++ IVTDDNPR+EDP IRA + G Sbjct: 397 TAGRIAVVVGAGGDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAVRAGAEAV 456 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R AI A++ DV+++AGKGHE + NG K D D + L Sbjct: 457 PGGGEVREIGDRRAAITEAVDWARTGDVVLIAGKGHEAGQEI-NGVKHPFDDRDELAAAL 515 >gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis ATCC 367] gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC 367] Length = 504 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 118/513 (23%), Positives = 185/513 (36%), Gaps = 36/513 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK LI + + L +Q + ++ DSR +QA +FV G ++ Sbjct: 1 MKANQLIA--LLQEHDLLRNTTLQVDDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYL 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + Y + + P+++V N RK LS A++LY P+N L V Sbjct: 57 HSAIENGATAYLAEEDYGV---------SVPVILVKNVRKALS-LAAQLYFDFPQNDLFV 106 Query: 121 TGTSGKS--------SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 G +G + Q+ + S LTT L K Sbjct: 107 IGYTGTKGKTTSTYLTTNILSHAFPQQVAMFSTINHIVGPKPQDQYRAHLTTAESFDLFK 166 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230 + G + +E +S R+ G+ G F N+ DHI + H Y K Sbjct: 167 EMRQAVDNGQKVLVMEVASQAYLLDRVYGLTFDVGIFLNISPDHIGVNEHPNFANYLFCK 226 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 M+L A D + + A Sbjct: 227 MQLLLNSRNCIINAETDHFDEIYAAAKVSTDPEHIFTYGFNQAQASLSITSRQATLTDSH 286 Query: 291 VTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 ++V + + +PG+F N+ A G A + L +PGR Sbjct: 287 FDLTVHDERLAALATTYDVSVPGDFNQSNSAAAILASHLAGAQVADMQYGLAH-TRIPGR 345 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 E + T G +Y+DYAH S+ +L + R+I V G GD+ + +R K Sbjct: 346 MESITTKHHGT-VYIDYAHDWGSMNALLSFLHTQFPDHRVIAVLGSTGDKGEDRREGFAK 404 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 D AD A +T D+P EDP I EI I R AI AI D Sbjct: 405 ALNDYADAAYLTTDDPGHEDPMAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTD 464 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++V+AGKG + + + + D + ++++ Sbjct: 465 LVVLAGKGEDAYQKINGVDTPYASDPVVAQDVI 497 >gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus mutans UA159] gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase; UDP-MurNac-tripeptide synthetase [Streptococcus mutans UA159] Length = 483 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 115/493 (23%), Positives = 201/493 (40%), Gaps = 30/493 (6%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +F E+I+ + E + +S DSR I+A +F + G F+ +AI Sbjct: 14 NANFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIES 71 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 G V Y + P+++V+N + + L A Y + LA TGT Sbjct: 72 GLTFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTK 122 Query: 125 GKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ A F I ++ + T+ ++LTTP + L K ++ + G+T Sbjct: 123 GKTTAAYFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMT 182 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H+ +E SS R+ G+ G F N+ DHI + + LL K S Sbjct: 183 HLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLLKHSR 239 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +I ++K Y I K + ++ + + Sbjct: 240 YVIVNSQMNHFALIKEQVADQPHDFYGKYSDNQIINSKAFSFDLTGKLAGHYDIQ----- 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 VAA L S ++ VPGR E + + G +++VDYA Sbjct: 295 ---LTGSFNQENAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLIQKN-GAKVFVDYA 350 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422 H +SLE +L + G +I++ G G++ + +R G + ++ I+T D+P + Sbjct: 351 HNGDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNN 410 Query: 423 EDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480 EDP+ I EI H I +R +AI+ A+ + + D +++AGKG + I+ Sbjct: 411 EDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIIKGKRT 470 Query: 481 KMSVDCDIIREIL 493 + D ++ R+ L Sbjct: 471 AYAGDIEVARKYL 483 >gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] Length = 512 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 117/508 (23%), Positives = 208/508 (40%), Gaps = 24/508 (4%) Query: 3 LQDLIYKD--FPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 + DL+ ++ + E+I + P + ++ ++S DSR + G +F G K + Sbjct: 7 ITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KGLKFNP- 64 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 ++ AI +GA A + D +TP ++V + +K +++ A YG E + Sbjct: 65 EYLASAIKEGATAAISE--LVYTDKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCPDEKL 122 Query: 118 --LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAK 172 + TGT GK++ F + I G Q + LTTP + L + Sbjct: 123 ELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESLDLFR 182 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G+ ++++E SS + R+ G+ G F N+ DHI + F+ + Sbjct: 183 MMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVE--HPTFDDYLW 240 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +++ I+ Y + + ++AH G ++++ G + H V+ Sbjct: 241 CKSQIIVNSDTVILNRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGKDHGYFDVS 300 Query: 293 ISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + + Y+ +AA A D K VPGR EF+ Sbjct: 301 THNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKVPGRMEFLK 360 Query: 351 TNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 N+ G VDYAH SL E GR+IVV G G + + +R +G+ + Sbjct: 361 NNA-GMVACVDYAHNYLSLSESFKFMKHEYPDGRLIVVIGAAGGKAESRRKDVGRALSEY 419 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD+AI+T ++ EDP I I I I +R+ AI+ A EM D + +A Sbjct: 420 ADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQAFEMAKPGDAMFMA 479 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 KG E + D + ++++ Sbjct: 480 AKGREQFMHEKGRDIPYVGDYQLSQKLM 507 >gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA17570] gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47368] Length = 481 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae 2603V/R] gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 2603V/R] Length = 484 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 121/500 (24%), Positives = 212/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V + Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSETDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I K + H K ++ + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N K D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS8232] gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS9429] gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10270] gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Streptococcus pyogenes MGAS8232] gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS9429] gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10270] Length = 481 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] Length = 483 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 204/498 (40%), Gaps = 32/498 (6%) Query: 3 LQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L++ +F E+I+ + E + +S DSR I+A +F + G F+ Sbjct: 11 LKN--NANFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLE 66 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 +AI G V Y + P+++V+N + + L A Y + LA Sbjct: 67 KAIESGLTFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLA 117 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I ++ + T+ ++LTTP + L K ++ + Sbjct: 118 FTGTKGKTTAAYFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAA 177 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 178 ANGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLL 234 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K S +I ++K Y I K + ++ + + Sbjct: 235 LKHSRYVIVNSQMNHFALVKEQVADQPHDFYGKYSDNQIVNSKAFSFDLTGKLAGHYDIQ 294 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 VAA L S ++ VPGR E + G ++ Sbjct: 295 --------LTGSFNQENAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVL-VQKNGAKV 345 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTD 417 +VDYAH +SLE +L + G +I++ G G++ + +R G + ++ I+T Sbjct: 346 FVDYAHNRDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTA 405 Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIV 475 D+P +EDP+ I EI H I +R +AI+ A+ + + D +++AGKG + IV Sbjct: 406 DDPNNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIV 465 Query: 476 TNGEKKMSVDCDIIREIL 493 + D ++ R+ L Sbjct: 466 KGKRTAYAGDIEVARKYL 483 >gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] Length = 481 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 209/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++S A+I D V+K ++ A ++ + Sbjct: 234 EKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI + I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacterium linens BL2] Length = 520 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 134/518 (25%), Positives = 219/518 (42%), Gaps = 37/518 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M++ L+ ER++ VS DSR + G ++ A+ G G F Sbjct: 1 MRISQLLPAA--------PGTVHGDPEREVGGVSHDSRTVSPGQLYAALPGANVHGAKFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKH-PEN 116 P + +G AI+ +A +A + L+V++ R L ++ +YG Sbjct: 53 PDLMERGITAILTDAAGWDMISAAVDPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQ 112 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALS 175 ++ VTGT+GK++ V + + G + IG +T+ + ++ TTP L + Sbjct: 113 LIGVTGTNGKTTTTYLVDGMLEALGHRTGVIGTVATLIAGVREPSVRTTPEAPELHALFA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + V ++E SSH L QHR+DG FTNL +DH+D+H + YF+ K +LF Sbjct: 173 KMRAADVDTCAMEVSSHALSQHRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFT 232 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 + ++ + + + G + + ++ Sbjct: 233 RTFSDAAVIVVEDRWGEKMVEAAQVPVRTLGRDDRSELRIEHTPGVSDFILHLGGSADET 292 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-RFEF 348 S DF+ + A +A AIG + + ++ V G R E Sbjct: 293 IALRSPLPGDFNVTNTALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEG 352 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 R R VDY+HT +++E L ++ S +++VFG GGDRD+GKR MG+ A Sbjct: 353 QTHPERLPRAIVDYSHTPDAIEKALASLHA-DSEELVIVFGAGGDRDRGKRYGMGQAAAR 411 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--------- 459 AD+ ++TDDNPR+EDP IRA I GI E N ++ IE+ + Sbjct: 412 GADVIVLTDDNPRTEDPNLIRAAIREGIDA--EISNGRARVKKVIEVAERGSAIDEAIAA 469 Query: 460 ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKGHET G D R L Sbjct: 470 AEASTTVLIAGKGHETGQS-AGGVVTDFDDRSRTRSAL 506 >gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] Length = 499 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 117/478 (24%), Positives = 210/478 (43%), Gaps = 21/478 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +S + F + G DGHL+I +AIA GA I+ S+ L +++ + Sbjct: 24 FSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEYAKQHP-D 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 VV N R+ L+ + Y + ++ VTGT+GK++ A++V + G+ I Sbjct: 83 LSFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGFI 142 Query: 148 GPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T + + TTP L K + +G V++E SS LDQ R++GI+ Sbjct: 143 GTTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMRVEGIR 202 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKRAH 261 TN+ +H++YH+ + Y +K+ L K+S A + D E+++ Sbjct: 203 FDVAIHTNISEEHLEYHKIFEHYLQSKLM-----LFKQSKAAVVNVDDKGMAKEILEVIS 257 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G + + + + +G+ + PL GE+ N A G Sbjct: 258 YPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAIGS 317 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + G + ++ L K+ V GRF+ + ++ +DYAHT +L +L ++ ++ Sbjct: 318 ALLSGQNIEAIVTVLPKMSQVEGRFQVI-QGPDNRKVILDYAHTPVALSAVLNEVKKLSH 376 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437 R+I + G RD K P M K A AD+ +VT D+P +P + ++ G Sbjct: 377 NRLIALIAGIGIRDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVIDAVLKGFTVPYK 436 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I +R EA+ A++ +D+++++ G + GE D II E Sbjct: 437 QQVITANSRREAVLAALKESGPEDIILLSS-GSINGAQIVKGEYIPHSDEAIIEEFFS 493 >gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces urogenitalis DSM 15434] gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces urogenitalis DSM 15434] Length = 549 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 150/517 (29%), Positives = 237/517 (45%), Gaps = 36/517 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL + E + + I+ VS DS + G +FVA+ G + G F Q Sbjct: 22 LADLAHTLSLEAAGDPA---ADLGQVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQ 78 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A GA A++ + + + ++ + P+L + R + A+ +Y HP L T Sbjct: 79 AVAGGAVAVLTDADGATRLGASLGQ--VPVLTHPDPRAVVGPLAAEVY-HHPATHLTTTA 135 Query: 123 TSGKSSVASFVQQICQ---RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178 +G + + + G ++ + + ++ TT L + ++ Sbjct: 136 VTGTNGKTTTTYFLQSILAAHLGQCMIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAV 195 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +GV S+EASSH + HRL G + FTNL RDH+D+H T + Y AK RLF Sbjct: 196 EEGVKAASLEASSHAIVLHRLGGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFTP-- 253 Query: 239 PKESPAIIYADDAYSKEVMKR--------------AHNAGCRVLSVGYQGKFIHLKKVCA 284 A+I DD + + +R + G Q +K Sbjct: 254 EHARRAVICVDDRWGAALAERVADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMT 313 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +G+ + L PLPG V NA +A + + G+ ++ L H +PG Sbjct: 314 QAATTFTLHGPDGEQIEALCPLPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPG 373 Query: 345 RFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 R + + VD+AHT ++++ LK +R IT GR+IVVFG GDRDQGKRP++G Sbjct: 374 RMQRISQRDGRRGTCIVDFAHTPEAMDLALKAVREITPGRLIVVFGSDGDRDQGKRPLLG 433 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEM 455 ++A LAD+ +VTD+NPRSEDP+ IR ++ G+ E R +A+R +E+ Sbjct: 434 QVAARLADVLVVTDENPRSEDPQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGVEL 493 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 QD ++V GKGHE + GE D ++RE Sbjct: 494 CGPQDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMREA 529 >gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] Length = 554 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 141/519 (27%), Positives = 214/519 (41%), Gaps = 66/519 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIP------------QA--IAQGAEAIVVSSAYS 78 +S+DSR + AG F+A G DG F+P A +A A+A + ++ Sbjct: 29 LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFADAYGLDASAR 88 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 + +A + + A+ YG+ + +LA+TGT+GK+S A ++ Q Sbjct: 89 AERIAAYAGP-------EGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQA 141 Query: 137 CQRSGL--SSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 IG + LTTP P+ L ++L L+ QG + ++EA Sbjct: 142 LSALRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEA 201 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SS G+ + RLDG + FTN +DH+DYH + AY+ AK LFE + + Sbjct: 202 SSIGIVERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFEWPQLPAAVVNVDDP 261 Query: 250 D--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ++ + RA + + + + I + Sbjct: 262 QGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTL 321 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-------------- 353 G + V N L +G A + +LH VPGR EF Sbjct: 322 GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSGGMSAAPGRPKQANIPS 381 Query: 354 -------------RGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQG 397 VDYAHT ++L IL+ +R + GR+ VFGCGGDRD Sbjct: 382 GGSEDTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRGGRLWCVFGCGGDRDPV 441 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIE 454 KRP+MG+ A AD ++T DNPRSE P+ I +I G+P + +R AI A+ Sbjct: 442 KRPLMGEAAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCDAWVEPDRAVAIARALA 501 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE G ++ D + L Sbjct: 502 AAQAPDVVLVAGKGHEDYQETA-GVRRPFSDRQQVSAAL 539 >gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 516 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 129/482 (26%), Positives = 213/482 (44%), Gaps = 25/482 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + D+R + G +FVA+ G G F A ++GA A++ + + Sbjct: 40 VRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPEG----MAFLTDLD 95 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V + A+ + + + VTGT+GK++ ++ + R G S + Sbjct: 96 IPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLV 155 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + +TTP L + + V H+ VE SSH L R+D + Sbjct: 156 GTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFAC 215 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGC 265 FTNL +DH+DYH T + YF K LF + I+ E ++R+ Sbjct: 216 VGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHDF 275 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322 LS+ + K + ++ + +GK+ +PG F NA +A + Sbjct: 276 VTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVVT 335 Query: 323 ------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + D L VPGR E + R+ VD+AH +S +++L + Sbjct: 336 GLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDTM 392 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ G+ Sbjct: 393 RISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAGM 452 Query: 437 PGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 G+ +E R AI AI +D +V+ G+GHE++ G+ + D + RE Sbjct: 453 KGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVAREA 511 Query: 493 LG 494 L Sbjct: 512 LS 513 >gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47901] Length = 481 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] Length = 481 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + ++ T+ + + +TP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +H+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pyogenes ATCC 10782] gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pyogenes ATCC 10782] Length = 481 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEANG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp. ART55/1] Length = 507 Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 108/512 (21%), Positives = 201/512 (39%), Gaps = 41/512 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++ + + ++ + ++ + ++ +S+ + G FV G ++ Sbjct: 10 LLDILSRQ-----DLITEYSEDCKDITPSHITINSKDVVPGTFFVC-KGASFK-EDYLKS 62 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AIAQGA + Y + P ++V++ RK ++L A +G +N+ V Sbjct: 63 AIAQGAIVYLSQQKYD--------DVDIPYIIVNDIRKAMALAARWFFGNPGDNMTKVGI 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLS 178 T K + + ST + + LTTP PI L Sbjct: 115 TGTKGKTTVTFVMKDILDKYTDNRCSAFSTHEIDVGTKVFETTLTTPEPIELQTYFDMAV 174 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G TH +E SS + +R+ G G FTN+ DHI T+ A + L Sbjct: 175 DEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHIS--PTEHASMEDYLGCKVSFL 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL---------------SVGYQGKFIHLKKVC 283 + ++Y+D Y + + + V F + Sbjct: 233 KQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESIEKLMSRDDDFFEKDTDFASIHNED 292 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + + G++ + L G++ V N + A + IGI + + + ++V P Sbjct: 293 LTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNDQIRSSIRDVYV-P 351 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402 GR + +DYAH S+ + + ++ + I VVFGCGG+R + +R M Sbjct: 352 GRLQVYHWK--DRTFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDM 409 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDV 461 G++A AD ++T ++P E E+I EI I +R +A+ A++ ++ Sbjct: 410 GRLAEQYADKVVLTMEDPGFESCEEICKEIKQYITKPCYIIVDREQALTRALDEAQPGEL 469 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ GKG E+ + + D +I L Sbjct: 470 VITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501 >gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodoferax ferrireducens T118] gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodoferax ferrireducens T118] Length = 538 Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 152/513 (29%), Positives = 226/513 (44%), Gaps = 55/513 (10%) Query: 29 KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + +DSR +Q G F+A G D F+ A+A GA A +V + A Sbjct: 17 RVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVERLGA----EAYAF 72 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG---- 141 S+ + N + L A+ + + + +LAVTGT+GK+S A ++ Q Sbjct: 73 SSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWLAQALSNLKLVTP 132 Query: 142 LSSFQIGPTSTISSFAQDN----------------------RLTTPSPIYLAKALSYLSS 179 + +G + + LTTP P+ L +AL Sbjct: 133 IPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDPVLLQQALRRFVD 192 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +G ++EASS GL + RL+G + FTN +DH+DYH AY+ K LF+ P Sbjct: 193 RGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYWQVKASLFQW--P 250 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEG- 297 A+I DD E+ + V +V + + + T+ G Sbjct: 251 GLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAEARLQACDIVHDAPGLRFTVLEHGP 310 Query: 298 ----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + L G + V N L +G+ A V+ L VPGR E Sbjct: 311 DGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVASCADLTAVPGRME 370 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGK 404 G + VDYAHT ++L L+ +R + GR+ VFGCGGDRD KRP+MG Sbjct: 371 CWGAPGQPL-AAVDYAHTPDALGKALQALRPLADQRGGRLWCVFGCGGDRDTAKRPLMGA 429 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDV 461 IA AD +VT DNPRSE P+ I ++I+ G+ G+ + +R AI AI QDV Sbjct: 430 IAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPDRARAIAQAIAQAAPQDV 489 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L++AGKGHE V G++ D + +R LG Sbjct: 490 LLIAGKGHEDYQEVA-GQRLPFSDAEQVRRALG 521 >gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] Length = 481 Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ +F E+I++ F +R ++S DSR + A +F + G+ F+ + Sbjct: 9 NILKNDYNFREIIDKGQYF-YHYRNLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + V + + + P+++V++ ++ +SL A YG + + LA Sbjct: 66 AVESGLQFYVSETDFEVT---------IPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I Q+S + T+ + LTTP + L K ++ Sbjct: 117 TGTKGKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVE 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ + EV+ + + H++ + Sbjct: 234 ENSRAVVVNSEMDHFEVLAEQVAS-------MEHDFYGQHSDNQIHHSQAFSFETSGILT 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F L G F NAL A+ C+ +G + + VPGR E + G +++ Sbjct: 287 EKFDIQLIGRFNQENALAASLACLRLGATISDIK-KGIAATRVPGRMEVLTQ-QNGAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L ++ GRI++V G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGRIVLVLGATGNKGESRRKDFGLLINQHPELMVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+ A+ + K D +++AGKG + I+ Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAGKGADCYQIIN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D I + L Sbjct: 465 GKKANYPGDYAIAEKYL 481 >gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes M1 GAS] gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS5005] gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Streptococcus pyogenes M1 GAS] gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS5005] Length = 481 Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae H36B] gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae H36B] Length = 484 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 212/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSEIDYGV---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I + + H K ++ + + Sbjct: 232 LLMENSKAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N + D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] Length = 481 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQAGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Planctomyces brasiliensis DSM 5305] gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Planctomyces brasiliensis DSM 5305] Length = 504 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 217/488 (44%), Gaps = 24/488 (4%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ELI Q S ++++ SR +FVA+ G+ + ++ QA AQGA Sbjct: 13 VLRELIPQASYV--GNANIVFRDIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAA 70 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 I+ S P +V N R+ L L G+ E VTGT+GK+ Sbjct: 71 GILTDFPLSDLAT--------PQCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +V ++ I + + + +G + LTTP A+ + + G T Sbjct: 123 TVTWMLRSIVKAANENCGLLGTIEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAA 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH +DQ RL G+ L G TN+ DH+DYH + Y LL ++P + Sbjct: 183 AIEVSSHAIDQDRLSGVSLAGGIITNITHDHLDYHGSLSKYA-EVKARIANLLQDDAPLV 241 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DD + ++ V I +++ +S + P Sbjct: 242 VNGDDCNIRNLLPHLPPETITVGFDKRNSYRIEIQEQTLQGT--AFRLSPGTEGAVLRCP 299 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG VYNA AA L A G + L L PGR + V + +VDYAHT Sbjct: 300 VPGRHNVYNAAFAAVLAQAAGYSLESISAGLASLVPPPGRLQPV-ETCQPFSCFVDYAHT 358 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++ L+++R++T GR+I +FG GG+RD+ KRP M + A ADI ++T DN R E Sbjct: 359 PDAIAQTLQSLRSVTKGRLICLFGAGGERDREKRPRMARAAEQ-ADIVVLTADNSRREPT 417 Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I EI G P +R +AI+ A+++ D +++ GKGHE + G+++ Sbjct: 418 AQILEEIQAGFSDAAPEVFVNADRSQAIQLAVKLAEPGDCVLILGKGHEKTQEIA-GQRR 476 Query: 482 MSVDCDII 489 D + Sbjct: 477 DFDDVAEV 484 >gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria AMMD] gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria AMMD] Length = 512 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R ++AG +F+ G DG FI A+A+GA A++ + + Sbjct: 31 LHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + AS YG +++ + VTGT+GK+S ++ I Sbjct: 88 VPA-----LDQLAGEIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260 FTNL +DH+DYH T AY AK +LF A++ DDA + +++ R Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + + V A + D D G F V N L G Sbjct: 261 IAYGIGDAQAPDADRELVALDVRATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLG 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 +A + + + +L V GR + +G + +DYAHT ++LE L +R Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380 Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGVIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus agalactiae 18RS21] gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus agalactiae 18RS21] Length = 484 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I K + H K ++ + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N + D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] Length = 505 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 103/500 (20%), Positives = 185/500 (37%), Gaps = 26/500 (5%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 L + E+ + ++ DSR + G +F+ G ++ AI +G Sbjct: 10 ANLLQNLRMMKEFYSNGEEEKNVGYLTYDSREVTEGTLFIC-KGAAFK-AEYLDAAIEKG 67 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A V Y ++ + P +VD+ RK + A + P L +TG G Sbjct: 68 AIAYVSEVKYETKE-------DVPYFLVDDIRKAMPPLAEKF-NNAPWKKLTITGIGGTK 119 Query: 128 SVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPIYLAKALSYLS 178 ++ + G +++ +TTP + L + L + Sbjct: 120 GKSTSAYYMKAIVDDYMEATGGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHAV 179 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+T +E SS L +R+D ++ G F N+ DHI + +L Sbjct: 180 ESGITFAEMEVSSQALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIFGK 239 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + A D + + + S ++ ++ ++ + E Sbjct: 240 SRYGVVNMDA-DFADRILKESKVCEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELF 298 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D +F +PG F V NAL I + I + GR E G+ + Sbjct: 299 DEEFRLTMPGLFNVENALAVIAASILLEIPKE-YMHSGLLRARSSGRMELYGSADKNLIA 357 Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH S E + +I+ I+ +FGC G + +R +G +A A +T Sbjct: 358 VVDYAHNKLSFEKLFSSIKDEYPDYNIVSIFGCPGKKAFIRRRDLGTVAGQYAKKVYLTA 417 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 ++P E E+I EI + + +R EAI+ A++ + + ++ GKG+ET Sbjct: 418 EDPGYEPVEQISKEIAQYVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIFLITGKGNETRQ 477 Query: 474 IVTNGEKKMSVDCDIIREIL 493 D ++E L Sbjct: 478 KYGCEYLDCKSDTQYVKEYL 497 >gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 525 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 121/490 (24%), Positives = 224/490 (45%), Gaps = 29/490 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +KIN +S DSR+ +FV + G DGH F+ +AIA+GA A++ ++ + Sbjct: 37 GSPSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGA-AVLAGENAAILEEF 95 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 + L ++ R FL+ + +G+ E + +TGT+GK++VA+FV+ + G Sbjct: 96 SRKFPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALG 155 Query: 142 LSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + S IG +SS + TTP L + + +G ++E SS ++Q Sbjct: 156 IPSGSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQ 215 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EV 256 R GI TNL +H+++H+T + Y AK++LF + A++ DD ++ Sbjct: 216 RTAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFR----QAKRAVVNLDDEGMGADI 271 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +K + + + ++ + + + P+ G + V N L Sbjct: 272 IKDFQGSLLTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLL 331 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G ++E L ++ GRFE + +I +DYAHT +L+ +LK Sbjct: 332 SAICTAMHLGFTIGQIIEALPRVENPSGRFEVLK-EFGRRKIIIDYAHTPVALKSLLKEA 390 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + R+IV+ G RD+ K P M + + AD IV+ D+P DP ++ ++ G Sbjct: 391 KKLPHKRLIVMITGIGIRDKEKMPQMAQAVENQADQVIVSVDHPGFLDPWEVVGHVMKGF 450 Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA-----GKGHETVHIVTNGEKKMSVDC 486 +++ R + + A+ + ++ D++++ G IV GEK D Sbjct: 451 SNPRAGNILQEPTRRDGVLAALSVSDEDDLILLTSGCING-----AQIVK-GEKIPHSDK 504 Query: 487 DIIREILGLI 496 +II+E + Sbjct: 505 EIIQEFFRNL 514 >gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] Length = 481 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae NEM316] gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 515] gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316] gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 515] Length = 484 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I + + H K ++ + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N K D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10750] gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10750] Length = 481 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLD-SDGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQEAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I L Sbjct: 462 IVKGQQVAYAGDLAIATHYL 481 >gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS315] gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes SSI-1] gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pyogenes MGAS315] gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2, 6-diaminopimelate ligase [Streptococcus pyogenes SSI-1] Length = 481 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDA-DEYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSVMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS6180] gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS6180] Length = 481 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 117/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMVFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I R L Sbjct: 462 IVKGQQVAYAGDLAIARHYL 481 >gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] Length = 481 Score = 233 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 119/491 (24%), Positives = 209/491 (42%), Gaps = 30/491 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++F E++ + + +S DSR + A +F + G ++ QAI+ G Sbjct: 15 QNFREVLVNGEYY-YHLEGTSFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 V Y + P ++V++ ++ +SL A YG + +LA TGT GK Sbjct: 72 GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A F I ++S + T+ + LTTP + L ++ + TH+ Sbjct: 123 TTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTHL 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS R+ G+ G F N+ DHI + + LL K S A+ Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D +V+ I K + ++ + + + Sbjct: 240 VINSDMDHFQVLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGNYDIQ------- 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F NA+ A C+ +G + + + K VPGR E + + G ++++DYAH Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424 +SL+ +L + T +G I +V G G++ + +R G + D +I +T D+P ED Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410 Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482 P I EI I +E +R +AI+ A+ M +D +++AGKG + IV +++ Sbjct: 411 PLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADCYQIVNGVKEEY 470 Query: 483 SVDCDIIREIL 493 D I L Sbjct: 471 PGDAAIAERYL 481 >gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes NZ131] gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus pyogenes NZ131] Length = 481 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 212/500 (42%), Gaps = 32/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E ++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREGLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ ++ I+ Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473 T D+P EDPE I EI I +R +AI+ A+ + +D +++AGKG + Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461 Query: 474 IVTNGEKKMSVDCDIIREIL 493 IV + + D I + L Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481 >gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parauberis NCFD 2020] gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parauberis NCFD 2020] Length = 483 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 119/498 (23%), Positives = 206/498 (41%), Gaps = 32/498 (6%) Query: 5 DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +L+ K+F E++++ + + + + ++ DSR + +F A G ++ Sbjct: 9 ELLKEDKNFREVLDKENYY-FNYSALTFSNLTYDSRKVDMSTLFFA-KGAAFK-AEYLES 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI G A V Y + P ++V + +K +++ A YG + + LA Sbjct: 66 AIKLGLTAYVSEVDYQV---------GIPAIIVTDIKKAMAIIAKDFYGNPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I Q S + T+ ++LTTP + L + +S + Sbjct: 117 TGTKGKTTAAYFAYNILQESHKPAMLSTMNTTLDGKTFFKSQLTTPESLDLFQMMSTIVD 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGMTHLIMEVSSQAYLVERVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D +++ + F + I N Q T S GK Sbjct: 234 ENSRAVIINSDMDHFDILAEQVA--------NQEHDFYGSQSENQILNSQAFTFSANGKM 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 AAGL ++ VPGR E + S G +++ Sbjct: 286 AGDYDIQLIGKFNQENATAAGLACLRLGADLTDIKQGIARTSVPGRMEVISHPS-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418 VDYAH +SLE ++ + G I ++ G G++ + +R G++ + +T D Sbjct: 345 VDYAHNGDSLEKLVTVVEEHQKGNISLIIGATGNKGESRRADFGQVINNHPTLKVYLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVT 476 +P EDP+ I EI + + +R +AI TAI+ K D L++AGKG + IV Sbjct: 405 DPNFEDPQDICQEIANHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAGKGADAYQIVN 464 Query: 477 NGEKKMSVDCDIIREILG 494 + D + + ++ Sbjct: 465 GQKTDYPGDLAVAQSLIN 482 >gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] Length = 481 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 211/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K +F E+I F +++S DSR++ +F + G F+ Sbjct: 9 DILKKDHNFREIIKDGHYFFHDSG-LTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+ G + + S + + P+LVV++ ++ +SL A YG + ILA Sbjct: 66 AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQAVA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ A F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ +++K ++ + A + + ++ + Sbjct: 234 ENSRAVVVNSGMDHFQIVKEQVSSIEHDFYGENSSNT--IIDSQAFNFEVSGKLAGKYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NAL A C+ +G + L VPGR E + + G +++ Sbjct: 292 -----QLIGRFNQENALAAGLACLRLGASLTDIQ-KGITLTRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL +L ++ G+ ++V G G++ + +R G + +I I+T D Sbjct: 345 VDYAHNGDSLTKLLNVVQEHQKGQTVLVLGATGNKGESRRKDFGILLNKHPEIQVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIVH 464 Query: 477 NGEKKMSVDCDIIREIL 493 + + D I L Sbjct: 465 DQKVAYPGDYQIAENYL 481 >gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae A909] gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae CJB111] gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae A909] gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae CJB111] Length = 484 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 211/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I + + H K ++ + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N + D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNHDNYSGDLEVAKKYL 482 >gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] Length = 534 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 136/518 (26%), Positives = 214/518 (41%), Gaps = 37/518 (7%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L++ + + + +++ ++ + ++ G +FVA+ G + G +I QAI GA Sbjct: 11 LQSLVHTVPVQVHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARG 70 Query: 71 IVVSSAYS--LQDFSATIRSNTPILVVDN---TRKFLSLFASRLYGKHPENILAVTGTSG 125 ++ A ++ A++ P+LVVD+ R+ A+ +YG+ + T Sbjct: 71 VLTDEAGYRIARELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGT 130 Query: 126 KSSVASFVQ--QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + I + +G + +G T + TT L L+ + V Sbjct: 131 NGKTTTTFFLDAILRTAGHHTGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEV 190 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 T VS+E SSH L HR+ G + FTNL RDH+D+H + YF AK +LF + Sbjct: 191 TAVSMEVSSHALALHRITGTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARAG 250 Query: 243 PAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D R V + + + Q V G Sbjct: 251 VINVDDDWGVQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHG 310 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + LPG V NA +AA + G+ + E L LH +PGR E V ++ Sbjct: 311 QRLRCHSALPGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPL- 369 Query: 358 IYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 VDYAHT+ +L+ L ++R T G + VV G GDRD KRP MG +A Sbjct: 370 TIVDYAHTAEALDFALSSLRQDLAARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAAR 429 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-------------GFIEKGNRIEAIRTAIEM 455 LAD+ + DD+P ED IR +++ G E R AI I Sbjct: 430 LADVVYIADDDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAA 489 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D++++AG+GHETV + G D R L Sbjct: 490 ASDGDIILIAGRGHETVQDMA-GVPHELDDRRHARRAL 526 >gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 481 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K +F E+I F +++S DSR++ +F + G F+ Sbjct: 9 DILKKDHNFREIIKDGHYFFHDGG-LTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+ G + + S + + P+LVV++ ++ +SL A YG + ILA Sbjct: 66 AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L + ++ + Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQAVA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ A F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I +++K ++ + A + ++ + Sbjct: 234 ENSRAVIVNSGMDHFQIVKEQVSSIEHDFYGENSSNT--IIDSQAFSFEASGKLAGKYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NAL A C+ +G + L VPGR E + + G +++ Sbjct: 292 -----QLIGRFNQENALAAGLACLRLGASLTDIQ-KGIALTRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL +L ++ G+ I+V G G++ + +R G + +I I+T D Sbjct: 345 VDYAHNGDSLTKLLSVVQEHQKGQTILVLGATGNKGESRRKDFGILLNKHPEIQVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D I L Sbjct: 465 GIKEAYPGDYQIAENYL 481 >gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] Length = 481 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 120/491 (24%), Positives = 206/491 (41%), Gaps = 30/491 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++F E++ + + +S DSR I A +F + G ++ QAI+ G Sbjct: 15 QNFREVLVNGEYY-YHLEGTSFDAISYDSRKISASTLFF-VKGANFK-KEYLEQAISNGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 V Y + P ++V++ ++ +SL A YG + +LA TGT GK Sbjct: 72 GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A F I ++S + T+ + LTTP + L ++ + TH+ Sbjct: 123 TTAAYFAYHILKQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTHL 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS R+ G+ G F N+ DHI + + LL K S A+ Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D V+K ++ A ++ + Sbjct: 240 VINSDMDHFSVLKEQVEDQEHDFYGSQSEN--QIENSKAFSFSATGKLAGDYDI-----Q 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F NA+ A C+ +G + + + K VPGR E + + G ++++DYAH Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424 +SL+ +L + T +G I +V G G++ + +R G + D +I +T D+P ED Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410 Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482 P I EI I +E +R EAI+ A+ +D +++AGKG + IV +++ Sbjct: 411 PLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAGKGADCYQIVNGIKEEY 470 Query: 483 SVDCDIIREIL 493 D I L Sbjct: 471 PGDAAIAERYL 481 >gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 479 Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 213/494 (43%), Gaps = 32/494 (6%) Query: 5 DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 DL+ K+F E+I S + + ++S DSR + +F + G ++ Sbjct: 9 DLLKADKNFREVIADDSYY-YHYTGLNFAKLSYDSRDVDDQTLFF-VKGANFK-AEYLQS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A+ QG A + Y + + P ++V++ + +S+ A Y + +LA Sbjct: 66 ALEQGLPAYISEVDYEV---------DIPAIIVNDIKHAMSIIAMAFYDNPQDNLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S ++ T+ ++LTTP + L K ++ S Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D +++K + Q H+ A K ++ K Sbjct: 234 ENSRAVIINSDMDYFKILKEQV--KNQEHDFYGQASDNHILDSQAFTFKVTGKLAGSYKT 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +AAGL S+ + VPGR E + G +++ Sbjct: 292 L------LIGRFNQDNALAAGLACLRLGASSDDIRKGIAETTVPGRMEVLSHPC-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SLE ++ + G+II++ G G++ + +R K+ + ++ I+T D Sbjct: 345 VDYAHNGDSLEKLVSVVEEHQKGQIILIIGSTGNKGESRRADFAKVINNHPNLSVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476 +P EDP+ I EI + + +R +AI+ +++ + D L++AGKG + I+ Sbjct: 405 DPNFEDPQTISEEIASYVSRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGADAYQIIN 464 Query: 477 NGEKKMSVDCDIIR 490 ++ + D I + Sbjct: 465 GKKRDYAGDYTIAK 478 >gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] Length = 508 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 186/499 (37%), Gaps = 24/499 (4%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + E N L + I +++ DS+ + +F+ G ++ +A+ G Sbjct: 13 SELVKEQDNLLEEELYGKEQTTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKNG 70 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A + Y + + P ++V + RK + + A++ + + + N++ + GT G Sbjct: 71 AVCYISEQKYE-------LDEDVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKG 123 Query: 126 KSSVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 KS+ ++ S+ ++ +TTP + L + Sbjct: 124 KSTSVYYMKSILDDYLAANGKKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVN 183 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+ V +E SS L R++ + F N+ DHI + + + + Sbjct: 184 CGMEFVEMEVSSQALKYGRVNEMMFDVAVFLNICEDHISPIE-HKDFEDYFSSKLLIFQK 242 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ + D + + +S + + + + + D Sbjct: 243 TKTAVVNLDADFSDRILEAAQCAPKVVTISTKNENADFYAYNIHKEGDGTIFNVRCAEFD 302 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +F +PG F V NAL + I + K GR E ++ Sbjct: 303 KEFELTMPGFFNVENALATIAVANQFNIPVE-FMYSGLKKARSSGRMELSTSDDNKIIAV 361 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH S E + +I+ R I+ +FGC G + +R +G IA A + + Sbjct: 362 VDYAHNKLSFEKLFSSIKEEYPDREIISIFGCPGKKAFTRRRDLGTIAGKYAKKVYLAAE 421 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +P E E+I +I + + +R EAI+ AIE + +L++ GKG+ET Sbjct: 422 DPGYEPVEEISRDIAEYVEAQGCPYEMIEDRGEAIKKAIESVENPSILLITGKGNETRQK 481 Query: 475 VTNGEKKMSVDCDIIREIL 493 D D +++ L Sbjct: 482 YGCEYVDCPSDTDYVKKYL 500 >gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 665 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 128/504 (25%), Positives = 197/504 (39%), Gaps = 24/504 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D + + + I R +++ ++ DSR + G +F+ G F+ Sbjct: 8 LGDYLDLLSEQNLLAAPIPDGLDRNQRVTGLTCDSRQVAPGTLFI-RKGAHF-QTKFLEM 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A QGA A V ++ P + + +TRK L+ A R Y ++ + Sbjct: 66 ARDQGAMACVSQEEDTVP--------GLPRIAITDTRKALAPLADRFYDHPSGKLKVIGI 117 Query: 121 TGTSGKSSVASFVQQICQRS------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 TGT GKSS A +++ I R G + + ++ LTTP P+ L + Sbjct: 118 TGTKGKSSTAYYMKSILDRYQESQGRGETGVVSSIDTYDGVERFESHLTTPEPLDLQRHF 177 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + G+ +V++E SS L HR + A F N+G DHI + +L Sbjct: 178 ANAAQTGLEYVTMEVSSQALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKLK 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 S + D A +A A S Y ++ V + T+ Sbjct: 238 IFAQAHISCVNLDCDHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQILFTLR 297 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +PG F V NAL AA LC A+ I V + L + V PGR E Sbjct: 298 TPRYTRQMRLTMPGLFNVENALGAAALCEALDIPEWAVYDGLVRARV-PGRMEVYANADG 356 Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAH S E + ++R + +VFGC G + +R +G+ A D Sbjct: 357 RVLSIVDYAHNRLSFETLFSSVRAEYPERELAIVFGCPGKKAYDRRHDLGEAAGAWCDRV 416 Query: 414 IVTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T+++ ED I EI G NR EAIR A+ K VL++ GKG Sbjct: 417 YLTEEDSGEEDTLDICQEIRPNVEKGKARCRIIPNRGEAIRQAVLESEKPTVLLLTGKGR 476 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET D + ++ L Sbjct: 477 ETRQKRGTEYIDTPTDVEYVQAFL 500 >gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia AU 1054] gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia HI2424] gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia AU 1054] gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia HI2424] Length = 515 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 219/472 (46%), Gaps = 22/472 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D F+ A+A+GA A++ +A Sbjct: 31 LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVALA 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + AS YG +++LAV TGT+GK+S ++ IG Sbjct: 91 VPALD--QLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 148 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + TTP L ++L+ L G V++E SSH L Q R++G F Sbjct: 149 GTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVF 208 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263 TNL +DH+DYH T AY AK +LF A+I DDA + +++ R Sbjct: 209 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + V A + D + G F V N L G + Sbjct: 267 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGALL 326 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 A + L +E+L V GR + +G + +DYAHT ++LE L +R I Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAA 386 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +++ G+ Sbjct: 387 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMTA 446 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 447 PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497 >gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis 05ZYH33] gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis 98HAH33] gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis SC84] gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis P1/7] gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis BM407] gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus suis 05ZYH33] gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus suis 98HAH33] gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis SC84] gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis BM407] gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis P1/7] gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis JS14] Length = 481 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 205/496 (41%), Gaps = 30/496 (6%) Query: 5 DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +++ D I Q W + + + +S DSR + +F A G F+ +A Sbjct: 9 EILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPMTLFFA-KGLAFK-KEFLEKA 66 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 I G V Y + P ++V + ++ +SL A +G + +LA T Sbjct: 67 IEAGLAFYVSEINYEV---------GIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFT 117 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK++ A F I ++S + T+ + LTTP + L ++ Sbjct: 118 GTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 178 GMTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S A+I EV+K ++ + + + + Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G F NA+ A C+ +G + + + VPGR E + G +++V Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDN 419 DYAH +S++ ++ + +G++ ++ G G++ + +R G + D I I+T D+ Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADD 405 Query: 420 PRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTN 477 P EDP I +I + +R EAIRTA+ + +D +++AGKG + IV Sbjct: 406 PNREDPAAIAEQIRAHMTRTSNFILDREEAIRTAMSQTSSPKDAVIIAGKGADAYQIVNG 465 Query: 478 GEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 466 EKAAYDGDLEVAKQYL 481 >gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus agalactiae ATCC 13813] Length = 484 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 211/500 (42%), Gaps = 31/500 (6%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 K+ +++ +F E++ + + N +S DSR I + +F A G + Sbjct: 6 KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 + AI G V Y + P+++V++ +K +SL + Y + Sbjct: 64 LDSAITTGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + + + T+ + LTTP + L + ++ Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ ++K Y I + + H K ++ + + Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K L G+F NA+ A C+ +G+ + + + VPGR E + + G Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415 +I+VDYAH +SL+ +L + G II+V G G++ Q +R G + ++ I+ Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473 T D+P EDP I EI I +R EAI A + N + D +++AGKG + Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462 Query: 474 IVTNGEKKMSVDCDIIREIL 493 I+ S D ++ ++ L Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482 >gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mariprofundus ferrooxydans PV-1] gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mariprofundus ferrooxydans PV-1] Length = 488 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 133/477 (27%), Positives = 210/477 (44%), Gaps = 27/477 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I + DSR+++ G+ + + ++ ++ A QGA AI+ ++ Sbjct: 16 DVLIMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAIIA--------VGVSV 67 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS- 143 S+ P+L + + ++ L RL+ +TGT GK+SVA +++ R Sbjct: 68 TSDLPVLHLASMQQA-GLLLRRLFRTEEARTHFYGITGTDGKTSVAWMLREALTRYQPKP 126 Query: 144 SFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G D TTPS + + LS + GV V+ E SSHG+ Q R+ G Sbjct: 127 VWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACEISSHGIAQERIAG 186 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I +TN+G DH+ H + Y K + + AD A +E Sbjct: 187 IDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVVANADHADIREHAPEHA 246 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 L S EG+ PL A VA L Sbjct: 247 CWYGHGLYRDDVDLAW-----EQELPGLLRLKSAEGEVVIEDIPLGDFHAENVACVALTL 301 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++ I A + + L ++ PGR + V ++Y+DYAHT +L+ L+ R +T Sbjct: 302 MVSMAIPLADLPKLLGRISAPPGRMQEVTAGYG--QVYIDYAHTPEALDRCLQAARKLTR 359 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 R++VVFGCGG+RD+ KRP MG IA++ AD+ +T DNPR E P I +EI G+ Sbjct: 360 ARLMVVFGCGGERDREKRPQMGAIAVEQADLVWITSDNPRGEMPAVIASEIEQGMSQPYA 419 Query: 442 KG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI AI L + D+L++AGKGHE V G++ D + + L Sbjct: 420 AEVRLQLDRDKAIGEAIATLAEGDLLIIAGKGHEAYMDVC-GQRLPWSDEQVAEKYL 475 >gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens TC1] gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens TC1] Length = 536 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 144/510 (28%), Positives = 237/510 (46%), Gaps = 34/510 (6%) Query: 11 FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + + L + P ++R + ++ +SR ++ G +++A+ G G F+PQA+ GA Sbjct: 19 LATIADALGVAAPDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAV 78 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT-----GTS 124 A+V A + Q A + P+L+V R + A+ +Y P + T GT+ Sbjct: 79 AVVTDDAGARQLALAGEQP-VPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTN 137 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ F+ + + IG + + LTTP + L+ + +G+ Sbjct: 138 GKTTTTYFINSLLRALEKKPGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLD 197 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 S+E SSH + HR+DG+ FTNL +DH+D H + YF K LF + Sbjct: 198 AASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFT--AGRARH 255 Query: 244 AIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGK 298 A++ DD + +++ + A + + + + A + + +G+ Sbjct: 256 AVVTVDDDWGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGR 315 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSR 354 LPG+F V NA +A + +A G+D A + H VPGR + + T Sbjct: 316 TLRVHTGLPGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLISTE-- 373 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VD+AH ++L L+ +R+ G R+IVVFG G RD+GKRP MG IA LAD+ Sbjct: 374 -PASVVDFAHNPDALSRALEAVRSPREGSRVIVVFGATGQRDKGKRPTMGAIAARLADVV 432 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I++DD+P ED IRAE++ G IE R AI+ A++M +D ++ Sbjct: 433 IISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTIL 492 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AG+GHE V G D +R L Sbjct: 493 IAGRGHEVWQEVK-GVNLALDDRVELRAAL 521 >gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 550 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 138/496 (27%), Positives = 218/496 (43%), Gaps = 29/496 (5%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + + +S +SR ++ G ++VA+ G G F QAI GA AI+ A + Sbjct: 47 VVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAAAILTDDAGAR 106 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQ 134 + + + P+LVV R + ++ +Y + P + VTGT+GK++ F+ Sbjct: 107 L-LALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNGKTTTTYFIT 165 Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G + IG + LTTP + L+ + G+T ++E SSH Sbjct: 166 SLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTAAAMEVSSHA 225 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + R+DG+ FTNL +DH+D H T + YF K LF + A++ DD + Sbjct: 226 ISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTP--ARARKAVVTVDDEWG 283 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + A + + + + A + T+ G + Sbjct: 284 RRLAGAAAVPVITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRLRVHTGLPGTFNV 343 Query: 314 NALVAAGLCIAIGIDSALVLE-----HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 A + + G A L+ VPGR + V VD+AH +++ Sbjct: 344 ANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLVSEQ---PAAVVDFAHNTDA 400 Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L L+ +R+ G R+IVVFG G RDQGKRP MG IA LAD IVTDD+P ED Sbjct: 401 LARALEAVRSPEPGSRLIVVFGATGQRDQGKRPAMGAIAARLADTVIVTDDDPHDEDAAA 460 Query: 428 IRAEIIHGIPGF----------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IRA+++ G E R +AI+ A+E+ +D ++VAG+GHE V Sbjct: 461 IRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTILVAGRGHEVWQEVK- 519 Query: 478 GEKKMSVDCDIIREIL 493 G D +R L Sbjct: 520 GVNLALDDRVELRSAL 535 >gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus helveticus MTCC 5463] Length = 523 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 189/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + A + Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + + + + +K+ + D+ + G+ Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T + G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKNHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ ++ + +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M DV+++ GKG + + Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + +E++ Sbjct: 503 DIVVAQEVIN 512 >gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 27-2-CHN] gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 115-3-CHN] gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus jensenii JV-V16] gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 27-2-CHN] gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 115-3-CHN] gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus jensenii JV-V16] Length = 516 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 107/489 (21%), Positives = 183/489 (37%), Gaps = 39/489 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR IQ +F G ++ A GA V + Sbjct: 34 ISYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGATCYVAEQPFPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL-----SSF 145 LVV + K ++L ++ Y +++ +A TGT GK++ A F++ I + S Sbjct: 85 LVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSS 144 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + P+ A + Sbjct: 205 LGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFPEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + ++ + L + + ++ + G+ Sbjct: 265 SIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G + E + + + GR E T + G + VDYAH S+ Sbjct: 325 FNEINGTAAIIGAGLGGANHEHASEGIRHVTIS-GRMETEKTKNHGL-VVVDYAHNKASM 382 Query: 370 EMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ + ++ +IIVV G GD+ +RP + AD A +T D+P EDP I Sbjct: 383 MALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFEDPMDI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AIR AI M K DV+++ GKG + + Sbjct: 443 AEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKIRGVNTPYPS 502 Query: 485 DCDIIREIL 493 D + R + Sbjct: 503 DIVVARNAI 511 >gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] Length = 452 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 131/432 (30%), Positives = 200/432 (46%), Gaps = 11/432 (2%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL QL + + ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A Sbjct: 17 LAELSGQLGVAAPEQT-AEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVA 75 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ A + + + P LVVD+ R + A+ +YG + + +TGTSGK++ Sbjct: 76 VLTDPAGAER----VAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A V+ + + I + TTP L + + +G V++E Sbjct: 132 TAYLVEGGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAME 191 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L R+DG G FTNL +H+++H + YF AK +LF + A Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLFTPERGRLGVVN--A 249 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307 DD Y + + K A + G+ + V T+ + PLP Sbjct: 250 DDEYGRRLAKEAGVPVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGERIAARSPLP 309 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A G+D + + + VPGR E V VDYAH ++ Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E +L+ +R +T GR+ VV GCGGDRD+ KR MG A LAD A++T DNPRSEDP Sbjct: 369 AVESVLRALRKVTEGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLTSDNPRSEDPLS 428 Query: 428 IRAEIIHGIPGF 439 I A ++HG Sbjct: 429 ILATMLHGAATV 440 >gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium resistens DSM 45100] Length = 552 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 142/520 (27%), Positives = 212/520 (40%), Gaps = 64/520 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + S ++AG +F A+ G K G F A A A++ A +D Sbjct: 22 VEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQF---AGTSQATAVLTDPAG--EDILEAQG 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR--SGLSSF 145 P L+VD+ R+++ A+ +YG HP L+V G +G S + + + S Sbjct: 77 VELPRLIVDDVREWMGPVAAEIYG-HPSRRLSVIGITGTSGKTTTSYLVEKALLPNHSVG 135 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T T + +LTTP + L+ + +GVTHV +E SSH L+ R+ GI Sbjct: 136 IIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHVVMEVSSHALELGRVHGIDF 195 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-----PAIIYADDAYSKEVMKR 259 +FTNL +DH+D+H T + YF AK +LF E ++ A+I DD + + + + Sbjct: 196 DVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHDVKLPAAVICVDDEWGQRMAQL 255 Query: 260 AHNAGCR---------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 A + + + ++ F Sbjct: 256 ASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIPTWVLESVQVTPSGRQEIRFHT 315 Query: 305 PLPGEFQVYNAL----------------VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 L VA +G D +HL + V PGR + Sbjct: 316 GATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGEDVEAAAQHLRDVQV-PGRMQA 374 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKI 405 V + VDYAH ++ +++ + GRI +V G GG+RDQ KRP MG Sbjct: 375 V-DEGQDFLAMVDYAHKPGAVAAVVRTLADYLPTKEGRIGIVIGAGGNRDQDKRPKMGYE 433 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRIEAIRTA 452 A +AD VTDDNPR EDP IR I G +R EAI A Sbjct: 434 AALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFAERGVEKKTVTLANIADRAEAITAA 493 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++ D +VVAGKGHET +V G D + +R Sbjct: 494 VQWAQPGDAIVVAGKGHETGQLVA-GVMHEFDDVEQLRAA 532 >gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter sp. FB24] gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter sp. FB24] Length = 550 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 154/501 (30%), Positives = 231/501 (46%), Gaps = 34/501 (6%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + +S +SR +Q G ++VA+ G G F+ QA+A GA A+V + Sbjct: 42 VVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAVAVVTDDDGAR 101 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQ 134 + + + P+LVVD R + A+ +Y PE ++ VTGT+GK++ F+ Sbjct: 102 L-LALSADTPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNGKTTTTYFIN 160 Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + Q G + IG + LTTP L L+ + +G+ S+E SSH Sbjct: 161 ALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDAASMEVSSHA 220 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + HR+DG++ FTNL +DH+D H T YF K RLF A+I DD + Sbjct: 221 VSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTP--RHAKSAVITVDDEWG 278 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLP 307 + + A + + + +G + LP Sbjct: 279 RRLASAAGIPVTTLATAQGNDPAAPAADWTVTAAAPRGLGTEFRLRHRDGSELRVHTGLP 338 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYA 363 G F V NA +A + +A G++ A + L++ PGR + V T VD+A Sbjct: 339 GSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTA---PAAVVDFA 395 Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H ++L+ L+ +R+ G R+IVVFG G RDQGKRP MG IA LAD+ I++DD+P Sbjct: 396 HNPDALQRALEAVRSTEPGSRVIVVFGATGQRDQGKRPAMGAIAARLADVVIISDDDPHD 455 Query: 423 EDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETV 472 ED IRA+++ G E G R AIR A+ M QD ++VAG+GHE Sbjct: 456 EDAAAIRADVLAGAREAKESGGLGCTILESYPRDVAIREAVNMAQPQDTILVAGRGHEVW 515 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 V G D +RE L Sbjct: 516 QEVK-GVNLALDDRVELREAL 535 >gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum subsp. pallidum str. Chicago] Length = 540 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 119/514 (23%), Positives = 190/514 (36%), Gaps = 56/514 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G +F A+ G G +I AI GA AIV T Sbjct: 25 DVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVV 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 V + R LS A+ Y ++ VTGT GKSS SF+ Q+ + G Sbjct: 79 GVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138 Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201 I TTP + + + L+ + +EASSHGL RL Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------------------ 243 + N+ +H+++H + + Y K +F L + Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258 Query: 244 -AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------- 295 KR A R + + L Q + + Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQE 318 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG---IDSALVLEHLEKLHVVPGRFEFV 349 +D +P E +AA + G A +H++ + + GR + V Sbjct: 319 PAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRV 378 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + +DYAHT +S E IL R++V+FG G+RD KR + G IA Sbjct: 379 DMGQ-DFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQGAIA 437 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQD 460 A + ++TD++PR EDP I I G +R+ A+R + QD Sbjct: 438 SRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQD 497 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++++ GKGHE I + + + RE+L Sbjct: 498 LVLLLGKGHEHSIIYAHTVQPY-DEERTARELLR 530 >gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus amylolyticus DSM 11664] gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus amylolyticus DSM 11664] Length = 551 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 109/495 (22%), Positives = 191/495 (38%), Gaps = 39/495 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 KI VS DSR IQ +F G ++ A GA V Y Sbjct: 57 TKIEYVSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------G 107 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL--- 142 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + + Sbjct: 108 KGMHALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQMNGGRT 167 Query: 143 --SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 S + + LTTP + L + + G+TH+ +E SS ++R+ Sbjct: 168 ALISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVF 227 Query: 201 GIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-------- 250 G+ G F N+ DH + H Y + K++L A D Sbjct: 228 GLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAESDHFDEIYAAATT 287 Query: 251 ---AYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 S + + + + Y + +++ + ++ Sbjct: 288 TTNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQLPINGEYTL 347 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G+F NA A G+ + + + + PGR + T G + VDYAH Sbjct: 348 QMIGDFNESNATAAIIGAGLAGMSHDACAKGIRHVTI-PGRMQTEMTKDHGM-VIVDYAH 405 Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S+ ++ + R + +IIVV G GD+ +RP + AD A +T D+P E Sbjct: 406 NKASMMALMSFVKREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 465 Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP+ I EI GI + +R +AI AI M K DV+++ GKG + + + Sbjct: 466 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVVLICGKGADAFQKIRGVD 525 Query: 480 KKMSVDCDIIREILG 494 D + + ++ Sbjct: 526 TPYPSDIVVAQNVIN 540 >gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus helveticus DPC 4571] gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus helveticus DSM 20075] gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus DPC 4571] gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus helveticus DSM 20075] gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus H10] gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus H10] Length = 523 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 189/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + A + Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + + + + +K+ + D+ + G+ Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T + G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKNHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ ++ + +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M DV+++ GKG + + Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + +E++ Sbjct: 503 DIVVAQEVIN 512 >gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] Length = 481 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 116/497 (23%), Positives = 212/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F ++I+Q + + W E + +S DSR + +F A G F+ Sbjct: 9 EVLKKDHNFRDIIDQDNYY-YSWTEVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G V Y + P ++V + ++ +SL A Y + + LA Sbjct: 66 AVKAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I +++ + T+ + LTTP + L + ++ + Sbjct: 117 TGTKGKTTAAYFAFNILKQNHKPAMLSTMNTTLDGKNFFKSILTTPESLDLFRMMAEAVA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + F LL Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + + + + H + + Sbjct: 235 NSRVVIVNSGMDHFDFIAEEVADKEHDFYGKNSDNAVKHGSGFSFKASGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D+ L G+F NA+ A C+ +G + + E + + VPGR E + + G + + Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGANLQDIKEGIAQ-TSVPGRMEVLTQTN-GAKTF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L+ + + G I ++ G G++ + +R G + D+ I+T D Sbjct: 345 VDYAHNGDSLDKLLQVVTSHQDGHISLILGAPGNKGESRRKDFGHVLNTYPDVDIILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R +AI+TA+ ++ +D +V+AGKG + IV Sbjct: 405 DPNKEDPLAICQEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGADAFQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 465 GKRDNYAGDIEVAKKYL 481 >gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. equi 4047] gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. equi 4047] Length = 481 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 119/499 (23%), Positives = 212/499 (42%), Gaps = 32/499 (6%) Query: 3 LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L ++ K +F E+++Q + + + + +S DSR +F A G+ F+ Sbjct: 7 LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGSAFK-ADFL 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 QAIA+G V Y + P+++V+N + +SL A Y + L Sbjct: 64 RQAIAKGLRLYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQNKLKLL 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 A TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGQHFFKSQLTTPESLDLFAMMAQC 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G+ G F N+ DHI + F L Sbjct: 175 VANGMTHLVMEVSSQAYLVGRIYGLTFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + + + ++ + G + + + Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAA--------GK 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D+ L G F NA+ A C+ +G + + + K VPGR E + ++ + Sbjct: 285 VAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRQGIAK-TNVPGRMEVLTMTNQ-AK 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 ++VDYAH +SLE +L + G+I ++ G G++ + +R G++ + I+T Sbjct: 343 VFVDYAHNGDSLEKLLSVVEEYQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRIILT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+P EDP+ I EI I +R EAI+T +E +QD L++AGKG + I Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGKGADAYQI 462 Query: 475 VTNGEKKMSVDCDIIREIL 493 V + + D I + L Sbjct: 463 VKGQKTAYAGDLAIAKSYL 481 >gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM 43247] gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM 43247] Length = 556 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 152/505 (30%), Positives = 235/505 (46%), Gaps = 32/505 (6%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L + ++ V+ ++ +++G +F A+ G+ G F A+A GA AI+ A Sbjct: 43 LDLIGGAESATEVTGVTLRAQEVRSGDLFAALPGSTTHGARFAADAVAAGATAILTDPAG 102 Query: 78 SLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ 134 + ++ LV R L ++R+YG + ++ +TGTSGK++ + V+ Sbjct: 103 RAELSRVLPPEASVVALVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVE 162 Query: 135 QICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +G S IG T Q + LTTP L L+ + +GV V +E SSH Sbjct: 163 AALLAAGSSVGLIGTVETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHA 222 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L R+DG G+FTNL +DH+D+H T AYF AK +LF P + + D Sbjct: 223 LALGRVDGSHFALGAFTNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEW 282 Query: 254 KEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 M R + G ++ + V + I+ D + + P Sbjct: 283 GARMAELARPAARQSARQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGDAELVVP 342 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + V NAL+A + G+D+A + + + V PGR + V VDYAH Sbjct: 343 LPGRYNVANALLAVAVADCAGVDAATAIGAIATVSV-PGRLQRVDRGQ-PFLALVDYAHK 400 Query: 366 SNSLEMI-----LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 +++ + + +GR+ +V G GGDRD KRP+MG+ A A+ +VTDDNP Sbjct: 401 PGAVQAVLATLRAQAAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDDNP 460 Query: 421 RSEDPEKIRAEIIHGI------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R+EDP IRAE++ G E G R EAI TA+ D +++AGKG Sbjct: 461 RTEDPAAIRAEVLAGARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAGKG 520 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HET + NG K D D++ ++L Sbjct: 521 HETGQEI-NGVKHPFDDRDVVAQVL 544 >gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 490 Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 145/512 (28%), Positives = 228/512 (44%), Gaps = 41/512 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ ++ + D+ + G +F+A+ G+ Sbjct: 1 MKLSELLAGHDHHVLQGDPERAWISA-----GTAFDADRVTPGSLFIAVPGH-------- 47 Query: 61 PQAIAQGAEAIVVSSA-------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 + G A+ + A + ++ V +TR +L +R +G+ Sbjct: 48 ---VEGGPGAVAPALARGAAAVMVDADCVLPAAARDACVVRVADTRTAAALVTARYFGEP 104 Query: 114 PENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNRLTTPS 166 + +A+TGT+GK+SV+ V+ + G + IG + LTTP Sbjct: 105 GRQMDVVAITGTNGKTSVSYMVESVLRISEGTRAGVIGTAGSRIGDEPIPMPPSVLTTPE 164 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 L L + +GV V +EA+S GL HR+D + G FTNL +DH+D H T + Y Sbjct: 165 TPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDVGVFTNLSQDHLDDHGTMENY 224 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 +AK+RLF A++ DD + +A G + Sbjct: 225 RDAKLRLF---QGLCRHAVVNVDDPVGAGI--QAMMPGAVTTYALDAEADYRATDLVVDA 279 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T+ EG+ + P PG F V NAL C +G D ++ LE++ +PGRF Sbjct: 280 AGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLGHDLTGLVAALERMPQIPGRF 339 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E + T + G + VDYAH+ +SL +L +R GR++ VFGCGGDRD KR MG IA Sbjct: 340 ERLTTAA-GTSVIVDYAHSPDSLNKVLGTVRGFARGRVVTVFGCGGDRDTTKRAEMGTIA 398 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 +D+ ++T DNPR EDPE I ++ GI + +R AI A+ D++ Sbjct: 399 GTHSDLCVLTSDNPRHEDPEDIMDQVAPGIAVTGTPYERIADRHAAIAFALSAAGPDDII 458 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++AGKG E V + D +RE+ G Sbjct: 459 LIAGKGSEPHQTVGD-TLIPFSDMATVRELTG 489 >gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia MC0-3] gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia MC0-3] Length = 515 Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 217/472 (45%), Gaps = 22/472 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++AG +FVA + D F+ A+A+GA A++ +A Sbjct: 31 LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVALA 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + AS YG ++ + VTGT+GK+S ++ IG Sbjct: 91 VPALD--QLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 148 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + + TTP L ++L+ L G V++E SSH L Q R +G F Sbjct: 149 GTGMPGQLVPSGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVAVF 208 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263 TNL +DH+DYH T AY AK +LF A+I DDA + +++ R Sbjct: 209 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + + V A + D D G F V N L G + Sbjct: 267 GIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGALL 326 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 A + L +E+L V GR + +G + +DYAHT ++LE L +R I Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAA 386 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +++ G+ Sbjct: 387 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMTA 446 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 447 PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 497 >gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] Length = 481 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 118/491 (24%), Positives = 208/491 (42%), Gaps = 30/491 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++F E++ + + + +S DSR + A +F + G ++ QAI+ G Sbjct: 15 QNFREVLVNGEYY-YHLEGTRFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 V Y + P ++V++ ++ +SL A YG + +LA TGT GK Sbjct: 72 GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A F I ++S + T+ + LTTP + L ++ + TH+ Sbjct: 123 TTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTHL 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS R+ G+ G F N+ DHI + + LL K S A+ Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D +V+ I K + ++ + + Sbjct: 240 VINSDMDHFQVLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGDYDIQ------- 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F NA+ A C+ +G + + + K VPGR E + + G ++++DYAH Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424 +SL+ +L + T +G I +V G G++ + +R G + D +I +T D+P ED Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410 Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482 P I EI I +E +R +AI+ A+ +D +++AGKG + IV +++ Sbjct: 411 PLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGADCYQIVNGVKEEY 470 Query: 483 SVDCDIIREIL 493 D I L Sbjct: 471 PGDATIAERYL 481 >gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus sakei subsp. sakei 23K] gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus sakei subsp. sakei 23K] Length = 513 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 112/496 (22%), Positives = 196/496 (39%), Gaps = 39/496 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + ++ DSR + A +F GN +F+ A GA V + Sbjct: 25 GDSNLNMTGIAYDSRKVTADTLFFC-KGNFR--PVFLTNAKEAGAVTYVAEQPIVEGN-- 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ-RS 140 L+V N +K +++ ++ Y ++ I+A TGT GK++ + F Q I Q + Sbjct: 80 -----GMNALIVTNVQKAMAVLSAAFYDYPQDDLFIVAYTGTKGKTTASYFTQSILQDAT 134 Query: 141 GLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + LTTP + L + G+TH+ +E SS + Sbjct: 135 NKKTALFSTIDRVLGPKPEDRFKSDLTTPESLDLFHDMRQAVENGMTHLVMEVSSQAYKK 194 Query: 197 HRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249 +R+ G+ G F N+ DH + H + Y + K++L A Sbjct: 195 NRVYGLTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQLLVNSRHCVINAQTQNFGDVYA 254 Query: 250 ------DAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + + ++ + + L + G D Sbjct: 255 AATTTTEPENIYLFADTSYQPAQPVNIDFRFENQAMTLAESRFKVTAVSKKAIQLGVSGD 314 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + L G+F NA A G D + + +L + PGR E + G +YVD Sbjct: 315 YQLRLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQI-PGRMETLAVEGHGQ-VYVD 372 Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L + + +++VV G GD+ +R ++ + AD AI+T D+P Sbjct: 373 YAHNYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRAILTTDDP 432 Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP I AEI+ GI + +R AI+ AIE D++V+A KG + V Sbjct: 433 GYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKGADAYQKVR 492 Query: 477 NGEKKMSVDCDIIREI 492 + D I +++ Sbjct: 493 GVDTPYPTDMVIAKQV 508 >gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis ST3] gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis ST3] Length = 481 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 113/496 (22%), Positives = 206/496 (41%), Gaps = 30/496 (6%) Query: 5 DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +++ D I Q W + + + +S DSR + +F A G F+ +A Sbjct: 9 EILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKA 66 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 I G V Y + + P ++V + ++ +SL A +G + +LA T Sbjct: 67 IEAGLAFYVSEIDYEV---------DIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFT 117 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK++ A F I ++S + T+ + LTTP + L ++ Sbjct: 118 GTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G++H+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 178 GMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S A+I EV+K ++ + + + + Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G F NA+ A C+ +G + + + VPGR E + G +++V Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDN 419 DYAH +S++ ++ + +G++ ++ G G++ + +R G + D I I+T D+ Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADD 405 Query: 420 PRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTN 477 P EDP I +I + +R EAIRTA+ + +D +++AGKG + IV Sbjct: 406 PNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSTKDAVIIAGKGADAYQIVNG 465 Query: 478 GEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 466 EKAAYDGDLEVAKQYL 481 >gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 483 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 35/500 (7%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+I +++S DSR + + +F A G ++ Q Sbjct: 9 EILKKDHNFREIIFHNQYSLTWKENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120 AI +G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AIQKGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFAYNILKQSHKPAMFSTMNTTLDGKTFSKSKLTTPESLDLFKMMATAVD 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G+F N+ DH H T + YF K L Sbjct: 178 NGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + +++V H+ + + V Sbjct: 238 KAVVVNAGMDHFKVVAEQVADLPHDFYGKDSDNTIENGRTFDFDVTGKLA---------- 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F NAL A C+ +G + + + + VPGR E + + G + Sbjct: 288 --GHYDIQLIGSFNQENALAAGLACLRLGTSPEDIKKGIAE-TSVPGRMEVITQAN-GAK 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 ++VDYAH +SLE +L + +G + ++ G G++ + +R ++ ++ I+T Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQTGNLHLILGATGNKGESRRADFARVINAHPNLQVILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+P EDP+ I EI + +E +R +AI A+ + D +++AGKG + I Sbjct: 404 ADDPNYEDPKAIAEEIASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKGADAYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V + D +I ++ L Sbjct: 464 VNGERTAYAGDMNIAKKYLN 483 >gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] Length = 483 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 117/498 (23%), Positives = 213/498 (42%), Gaps = 32/498 (6%) Query: 5 DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K+F ++ Q + W + +S DSRH+ +F A G F+ Sbjct: 9 DILKQDKNFRDIAYQ-GDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFK-KEFLQG 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 A+ +G + Y + P ++V++ ++ +SL A Y + ILA Sbjct: 66 AVEKGLAFYIAEKDYEV---------GIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L + ++ Sbjct: 117 TGTKGKTTAAYFAYNIFKQSQKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVE 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +H+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRSHLIMEVSSQAFLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ +++ + + L +++ Sbjct: 234 ENSRAVVVNSGMDHFAILRDQVASIP-------HDFYGELSDNQIKNSRAFDFDLTGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G+F NAL A C+ +G A + + + VPGR E + + G +++ Sbjct: 287 GHYDIQLIGDFNQENALAAGLACLRLGASPADIQRGIAE-TTVPGRMEVLTQTN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L + SG+ I++ G G++ + +R G + D+ I++ D Sbjct: 345 VDYAHNGDSLKKLLSVVAQHQSGKNILILGAPGNKGESRRADFGAVINHHPDLEVILSAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476 +P EDP+ I EI I +R +AI+TA+++ QD +++AGKG + IV Sbjct: 405 DPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGADAFQIVD 464 Query: 477 NGEKKMSVDCDIIREILG 494 + D I ++ L Sbjct: 465 GKRASYAGDLAIAKKYLN 482 >gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 11V1-d] gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 11V1-d] Length = 519 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 204/529 (38%), Gaps = 45/529 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + ++ +S DSR I+ +F G + Sbjct: 1 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y L+V N K +SL ++ Y + Sbjct: 60 --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110 Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168 ++ +A TGT GK++ A F++ I + +G + + LTTP + Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DHI + H + Y Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272 + K++L A+ D S + R R + + Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + ++ + G+F NA A G++ Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + ++ + + PGR E + T G + VDYAH S+ ++ + + S +IIVV G Sbjct: 351 YDGIKNVTI-PGRMETLTTAHHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +R + A+ +T D+P ED + I EI GI + + +R + Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AI+ DV+++ GKG + + + D + +E++ + Sbjct: 469 AIAEAIKEAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517 >gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] Length = 505 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 116/497 (23%), Positives = 198/497 (39%), Gaps = 14/497 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + Q + +R + +S DSR + +F A G ++ A+ Sbjct: 11 LSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGPEALF-ACKGAAFKPA-YLEDALNA 68 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A + S + + LV D+ R ++ A YG+ + I + +TGT Sbjct: 69 GAAAYLCDE--SSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTK 126 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GKS+ + ++ I +G+ IG A ++ TTP + L + + + G Sbjct: 127 GKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAESGRK 186 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H+ +E SSH L R G+ L F N+GRDHI + ++ + + Sbjct: 187 HLVMEVSSHALKYDRTLGLMLDVACFLNIGRDHISPSEHP-SFEDYFASKLRIFDQCRTA 245 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + + V + V + ++ EG Sbjct: 246 VVNLDSDLVDEVLEHARRAERLLTFGVDRPEADYSARDVRPCRDGIAFDLACEGGARPMT 305 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G F NAL A + GI + L + V PGR E V + + VDYA Sbjct: 306 LGMAGLFNAENALAAIAMARIAGIGFEDIASGLAHVRV-PGRMEVVRSAAGSTIALVDYA 364 Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H S + ++R + +++ VFG GD+ +R ++ ++A AD I T+++P Sbjct: 365 HNELSYKTFFTSVRKEHLAAKVVAVFGAPGDKAFERREVLPRVAAQFADYLIYTEEDPAH 424 Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNG 478 EDP I E+ P +R +AI A E+ + D V+ + KG ET + Sbjct: 425 EDPRAIAEELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVCLLAKGDETRQHRGDS 484 Query: 479 EKKMSVDCDIIREILGL 495 ++ D I RE LG+ Sbjct: 485 FPEVKSDLHIARECLGV 501 >gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners SPIN 2503V10-D] gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 3008A-a] gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2062A-h1] gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 143-D] gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 60-B] gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners SPIN 2503V10-D] gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2062A-h1] gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 3008A-a] gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 143-D] gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 60-B] Length = 519 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 205/529 (38%), Gaps = 45/529 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + ++ +S DSR I+ +F G + Sbjct: 1 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y L+V N K +SL ++ Y + Sbjct: 60 --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110 Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168 ++ +A TGT GK++ A F++ I + +G + + LTTP + Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DHI + H + Y Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272 + K++L A+ D S + R R + + Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + ++ + G+F NA A G++ Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + ++ + + PGR E + T + G + VDYAH S+ ++ + + S +IIVV G Sbjct: 351 YDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +R + A+ +T D+P ED + I EI GI + + +R + Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AI+ DV+++ GKG + + + D + +E++ + Sbjct: 469 AIAEAIKEAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517 >gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] Length = 567 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 217/479 (45%), Gaps = 20/479 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ DSR ++ G ++ A+ G K G F QA A GA A++ A + + Sbjct: 84 PPVTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADR----AAA 139 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+L V + R + A+ +YG+ E L +TGTSGK++ A V+ + +G S+ Sbjct: 140 TGLPVLAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTG 199 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TTP L + + +GV V++E SSH L R+DG Sbjct: 200 LVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVF 259 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 F NL +H+++H + YF AK RLF E + DD Y + + K A Sbjct: 260 DVAVFNNLSPEHMEFHSDMEDYFQAKARLFTERRARLGVVNF--DDEYGRRLAKEASIPV 317 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCI 323 + G + V H +T+ PLPG F V N + A Sbjct: 318 VTFSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTLA 377 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+D + + + VPGR E V VDYAH ++++E +L+ +R +T+G+ Sbjct: 378 AAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTDAVESVLRALREVTTGK 436 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----- 438 + +V GCGGDRD KR MG A AD A++T DNPRSEDP I + G Sbjct: 437 LHIVLGCGGDRDTTKRAPMGAAAARFADTAVLTSDNPRSEDPLTILGAMFEGAVSVPPAE 496 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI A+ D ++VAGKGHE G + D ++R + Sbjct: 497 RGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQDTA-GVVRPFDDRAVLRAAIE 554 >gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii 269-3] gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii SJ-7A-US] gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 1153] gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii 269-3] gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 1153] gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii SJ-7A-US] gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] Length = 516 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 108/489 (22%), Positives = 184/489 (37%), Gaps = 39/489 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR IQ +F G ++ A GA V + Sbjct: 34 ISYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGATCYVAEQPFPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL-----SSF 145 LVV + K ++L ++ Y +++ +A TGT GK++ A F++ I + S Sbjct: 85 LVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSS 144 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + + A + Sbjct: 205 LGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFSEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + ++ + L + + ++ + G+ Sbjct: 265 SIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G + E + + + PGR E T + G + VDYAH S+ Sbjct: 325 FNEINGTAAIIGAGLGGANHDHAAEGIRHVTI-PGRMETEKTKNHGL-VVVDYAHNKASM 382 Query: 370 EMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ + ++ +IIVV G GD+ +RP + AD A +T D+P EDP I Sbjct: 383 MALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFEDPMDI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AIR AI M K DV+++ GKG + V Sbjct: 443 AEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKVRGINTPYPS 502 Query: 485 DCDIIREIL 493 D + R ++ Sbjct: 503 DIVVARNVI 511 >gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. TJI49] Length = 513 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 145/476 (30%), Positives = 217/476 (45%), Gaps = 32/476 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +D+R + AG +FVA DG FI +A+A+GA A++ +A + Sbjct: 31 LHADTRSLGAGDVFVAY---AVDGADNRGFIAEAVARGAAAVLYQPEGLAAASAAPVALA 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + AS YG ++ + VTGT+GK+S ++ I Sbjct: 88 VPA-----LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVI 142 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP L ++L+ LS+ G V++E SSH L Q R++G Sbjct: 143 GTLGSGMPGQLVPTGFTTPDAPQLQRSLAQLSAAGAKAVAMEVSSHALHQGRVNGTAFDI 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259 FTNL +DH+DYH T AY AK +LF A++ DDA + ++++ Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + V A + D D G F V N L Sbjct: 261 IAYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEVGTLGTFNVSNLLAVL 320 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377 G +A + L + +L V GR + +G + +DYAHT ++LE L +R Sbjct: 321 GALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLVVIDYAHTPDALEKTLDALR 380 Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +I+ Sbjct: 381 PIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQAIIDQIVA 440 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 441 GMTAPDRARRTEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 495 >gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis SK564] gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis SK564] Length = 481 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 205/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + + DSR + +F + G F+ Sbjct: 9 DILKKDSLFREIIDQ-GHYHYNYSDVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI+QG V Y + P ++V + +K +SL A YG E + LA Sbjct: 66 AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P E+P I EI I +E +R EAI+ A+ + N + D +++AGKG + IV Sbjct: 405 DPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKEAYPGDAAVAENYL 481 >gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu002] gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu002] Length = 425 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 189/414 (45%), Gaps = 14/414 (3%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 R+ P+LV R L A+ +YG E ++ +TGTSGK++ V+ + + Sbjct: 2 EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAA 61 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + IG + LTTP L L+ + +GV V +E SSH L R+ Sbjct: 62 GRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRV 121 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG + G+FTNL RDH+D+H + YF AK LF+ + + D + M Sbjct: 122 DGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAA 181 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVA 318 V + + QQ T + LPG + V N LVA Sbjct: 182 RAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVA 241 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G+ + L ++ V PGR E + G VDYAH +L +L + Sbjct: 242 LAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTTL-A 298 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 299 HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAE 358 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 359 VGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 411 >gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 481 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 120/499 (24%), Positives = 212/499 (42%), Gaps = 32/499 (6%) Query: 3 LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L ++ K +F E+++Q + + + + +S DSR +F A G F+ Sbjct: 7 LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118 QAIA+G + V Y + P+++V+N + +SL A Y +H +L Sbjct: 64 KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 A TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G+ G F N+ DHI + F L Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + + + ++ + G + + + + Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAAGKLA------ 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D+ L G F NA+ A C+ +G + + K VPGR E + ++ + Sbjct: 287 --GDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRLGIAK-TRVPGRMEVLTMTNQ-AK 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 I VDYAH +SLE +L + G+I ++ G G++ + +R G++ + I+T Sbjct: 343 IVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRIILT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+P EDP+ I EI I +R EAI+ +E +QD L++AGKG + I Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKGADAYQI 462 Query: 475 VTNGEKKMSVDCDIIREIL 493 V + + D I + L Sbjct: 463 VKGQKTAYAGDLAIAKSYL 481 >gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus F0211] gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus F0211] Length = 481 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ +F E+I++ F +R+ ++S DSR + A +F + G+ F+ + Sbjct: 9 NILKNDHNFREIIDKGQYF-YHYRDLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P L+V++ ++ +SL A YG + + LA Sbjct: 66 AVTAGLQLYISEMDFEV---------GIPALIVNDVKQAMSLLAMEFYGNPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I Q+S + T+ + LTTP + L K ++ Sbjct: 117 TGTKGKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSALTTPESLDLFKMMATAVE 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ + EV+ + + H++ + Sbjct: 234 ENSLAVVVNSEMDHFEVLAEQVAS-------MEHDFYGQHSDNQIRHSQAFSFETSGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F L G F NAL A C+ +G A + + + VPGR E + G +++ Sbjct: 287 EKFDIQLIGRFNQENALAAVLACLRLGASVADIKKGIAS-TRVPGRMEVLTQ-QNGAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L ++ G+II+V G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGKIILVLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+ A+ + + D +++AGKG + I+ Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGADCYQIIN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D I + L Sbjct: 465 GEKADYLGDYAIAEKYL 481 >gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] Length = 470 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 138/451 (30%), Positives = 212/451 (47%), Gaps = 20/451 (4%) Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G F QA + GA A + A + + + + P+LVV + R + A+R+YG + Sbjct: 14 GADFAAQAASLGAVAALTDPAGAER----VLAAGRPVLVVGDPRGRMGALAARIYGNPGD 69 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAK 172 + +TGTSGK++ A ++ + +G S+ IG T + TTP L Sbjct: 70 GLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQA 129 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + +GV V++E SSH L R+DG+ F NL +H+++H + YF AK + Sbjct: 130 LFAVMRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQ 189 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF + DDAY + ++ A + G+ + V T Sbjct: 190 LFTRARSRRGVVNR--DDAYGRRLVAEAEVPIVTFSAEGHPDADWRAEDVEIRATDSVFT 247 Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + PLPG F V N L A GID E + + VPGR E V Sbjct: 248 VVGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPGRLERV-D 306 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD Sbjct: 307 EGQPYLAVVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLAD 366 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 A++T DNPRSEDP I A ++ G + + +R AI + D ++ Sbjct: 367 TAVLTSDNPRSEDPLAILAAMLAGAAEVPVHERGDVLVEADRAAAIAAVVARAEPGDTVL 426 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AGKGHE V NG + D ++++E + Sbjct: 427 IAGKGHEQGQDV-NGVVRPFDDREVLKEAIR 456 >gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus JV-V01] gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus 125-2-CHN] gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-1A-US] gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-3A-US] gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus 214-1] gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus crispatus CTV-05] gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus JV-V01] gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus 125-2-CHN] gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-1A-US] gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-3A-US] gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus 214-1] gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus crispatus CTV-05] Length = 523 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 105/490 (21%), Positives = 190/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + A + Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + + + + + + +K+ + D+ + G+ Sbjct: 265 SIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKKHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +++ +R +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M DV+++ GKG + + Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVVLICGKGADAFQKIRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + ++++ Sbjct: 503 DIVVAQQVIN 512 >gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acidithiobacillus caldus ATCC 51756] gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acidithiobacillus caldus ATCC 51756] Length = 478 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 145/499 (29%), Positives = 222/499 (44%), Gaps = 29/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + PEL + ++ + SDSR ++ G +FV + DG F+ Sbjct: 1 MYATEGLDSLLPELEGAGA--------VRVCGIESDSRRVRPGQLFVGLHSRHGDGARFL 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA+ A ++ + P+ V + L R Y ++ Sbjct: 53 AQAL----AAGAAAALLQGPELRRDTVDGQPVWVHPEAPRLLGEALRRWYHWQGRAPGLI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GKSSV + Q+ + IG + Q TTP+ + L L Sbjct: 109 GVTGTNGKSSVTWLIAQLA-----GAEVIGTLGAGPLTALQPLANTTPAAVELWSLLGAA 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +++E SSH L R+ G+ A FTNL RDH+D+H + AY AK +LF Sbjct: 164 RQRRAQWLAMEVSSHALALERVAGVPFTAAVFTNLSRDHLDFHGSMAAYGAAKAKLFTNP 223 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + D ++ + R++ G+ +++ + I Sbjct: 224 ALQLAVL---NADDPFSAELRTHLHPDVRIVGYGFGAGDYRVREYHPGARATLLVIDTPA 280 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356 PL G N L A +G+D + L L + PGR++ + Sbjct: 281 GTRPLRIPLMGMANARNFLAALAAVEGLGMDVD--PQVLAALRLPPGRYQRLSPRTPQQP 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++L +L+++RT+ GRI VVFGCGGDRD+GKRP MG +A LAD ++T Sbjct: 339 DVLVDYAHTPDALRQVLEDLRTVAKGRITVVFGCGGDRDRGKRPEMGAVAAALADRVLLT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DDNPRSEDP I AEI+ G+P +R AI AI D +++AGKGHE Sbjct: 399 DDNPRSEDPAAIVAEILAGMPAGRAEVCHDRAAAIARAIGEAEHGDWVLIAGKGHEQTQE 458 Query: 475 VTNGEKKMSVDCDIIREIL 493 + G K+ D ++ L Sbjct: 459 -SAGAKRPCDDVELATRAL 476 >gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 504 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 107/512 (20%), Positives = 194/512 (37%), Gaps = 35/512 (6%) Query: 8 YKDFPELINQLS-----IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 K E+ L P+ + + +S +S+ + G +F G ++ Q Sbjct: 2 KKTLREICRLLDERGQLKSPLLTSQASVQNLSYNSKAVSEGTLFFC-KGAHFKPA-YLEQ 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A A GA A V Y L + ++ V++ R + + A Y + Sbjct: 60 AQALGAIAYVSEQDYGL---------DLYLIQVEDIRLAMPIIADFFYQAPYQAFHLTGI 110 Query: 123 TSGKSSVASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 T K + +++ + ++ LTTP + L Sbjct: 111 TGTKGKTTTTFYLTKILDLYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRF 170 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMR 232 +++ + +++E SS L HR+ + G+F N+ DH H + YF +K++ Sbjct: 171 NHVRESAIDFMTMEVSSQALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLK 230 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF++ D + +S + K + + ++Q Sbjct: 231 LFDQSQLAVINLDADHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQQHFV 290 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + + G F V NALVA + + +++ + GR E + Sbjct: 291 LHAPDFEGEIRMKMLGRFNVENALVAIAIARYYQVPYE-IIKKALQAAQTEGRMEVYHST 349 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + VD+AH SLE + + R + IVVFG GD+ +R +G++A AD Sbjct: 350 DKRIHAIVDFAHNKLSLEKLFEASRQMYPKAHSIVVFGSAGDKAISRRKDLGEVAAQYAD 409 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQD---VLVV 464 I+T D+P +E EKI EI I NR +AI A + + D V+++ Sbjct: 410 EIILTMDDPGTESVEKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEVVVLI 469 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AGKG E + ++ D +++ L I Sbjct: 470 AGKGDEDTMKINGVDQAYPTDRYYVKQALEEI 501 >gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0027] Length = 514 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 489 DLYQKVNGVDEPYAGDFALAKMII 512 >gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5] gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5] Length = 506 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504 >gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 03V1-b] gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 03V1-b] Length = 519 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 204/529 (38%), Gaps = 45/529 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + ++ +S DSR I+ +F G + Sbjct: 1 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y L+V N K +SL ++ Y + Sbjct: 60 --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110 Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168 ++ +A TGT GK++ A F++ I + +G + + LTTP + Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DHI + H + Y Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272 + K++L A+ D S + R R + + Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + ++ + G+F NA A G++ Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + ++ + + PGR E + T G + VDYAH S+ ++ + + S +IIVV G Sbjct: 351 YDGIKNVTI-PGRMETLTTAHHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +R + A+ +T D+P ED + I EI GI + + +R + Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AI+ DV+++ GKG + + + D + +E++ + Sbjct: 469 AIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517 >gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseomonas cervicalis ATCC 49957] gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseomonas cervicalis ATCC 49957] Length = 425 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 161/411 (39%), Positives = 231/411 (56%), Gaps = 7/411 (1%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L + R+ L+ A+ +G+ P +AVTGT+GK+S F++QI +G + +G Sbjct: 14 PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73 Query: 151 STISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + F + LTTP P+ L + L+ L+ GV V++EASSHGL+Q RLDG++L A F Sbjct: 74 GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMKRAHNAGCRV 267 +NL RDH+DYH AY AK+RLF+ LL + A + + A R+ Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRHLRL 193 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +VG G+ I L + + Q + +++ G+ + L LPG FQ N ++AAGL ++ G+ Sbjct: 194 ATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVSAGM 253 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + V L +L V GR E G +YVDYAHT ++LE +L +R GR+ VV Sbjct: 254 PADKVAGLLPRLTGVRGRMELAARLPNGAAVYVDYAHTPDALERLLTALRPHAEGRLHVV 313 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 FG GGDRD GKRP+MG++ LAD AI+TDDNPR EDP IRA + G+ G E G+ Sbjct: 314 FGAGGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMAGGAAITEIGD 373 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 R AI + L DVL VAGKGHE + G D + +R + G+ Sbjct: 374 RAAAIEAGLAALGPGDVLAVAGKGHEPGQTIQ-GVTHPFDDAETVRRLAGV 423 >gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] Length = 501 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 190/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + ++ G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S + Sbjct: 260 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. zooepidemicus] gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. zooepidemicus] Length = 481 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 120/499 (24%), Positives = 214/499 (42%), Gaps = 32/499 (6%) Query: 3 LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L ++ K +F E+++Q + + + + +S DSR +F A G F+ Sbjct: 7 LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118 QAIA+G + V Y + P+++V+N + +SL A Y +H +L Sbjct: 64 KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 A TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G+ G F N+ DHI + F L Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + ++ + + + ++ + G + + + + Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAAGKLA------ 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D+ L G F NA+ A C+ +G + + + K VPGR E + ++ + Sbjct: 287 --GDYAIQLIGSFNQENAMAAGLACLRLGASLKDIRQGIAK-TRVPGRMEVLTMTNQ-AK 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 + VDYAH +SLE +L + G+I ++ G G++ + +R G++ + I+T Sbjct: 343 VVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVHIILT 402 Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+P EDP+ I EI I +R EAI+T +E K+D L++AGKG + I Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQSKEDALIIAGKGADAYQI 462 Query: 475 VTNGEKKMSVDCDIIREIL 493 V + + D I + L Sbjct: 463 VKGQKAAYAGDLAIAKSYL 481 >gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners AB-1] gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 09V1-c] gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 01V1-a] gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2052A-d] gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2053A-b] gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners SPIN 1401G] gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 09V1-c] gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 01V1-a] gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2053A-b] gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2052A-d] gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners SPIN 1401G] Length = 519 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 205/529 (38%), Gaps = 45/529 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + ++ +S DSR I+ +F G + Sbjct: 1 MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y L+V N K +SL ++ Y + Sbjct: 60 --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110 Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168 ++ +A TGT GK++ A F++ I + +G + + LTTP + Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DHI + H + Y Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272 + K++L A+ D S + R R + + Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + ++ + G+F NA A G++ Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + ++ + + PGR E + T + G + VDYAH S+ ++ + + S +IIVV G Sbjct: 351 YDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +R + A+ +T D+P ED + I EI GI + + +R + Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AI AI+ DV+++ GKG + + + D + +E++ + Sbjct: 469 AIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517 >gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] Length = 501 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 189/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + ++ G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S + Sbjct: 260 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + + G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus NCFM] gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase [Lactobacillus acidophilus NCFM] Length = 523 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 187/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A + GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKSNGANCYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISS 144 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI ++ +L + ++ + Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPD 264 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309 + + V + ++ F D+ + G+ Sbjct: 265 SIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRNVTI-PGRMQTERTKEHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +++ ++ +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI DV+++ GKG + + + Sbjct: 443 AEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVDTPYPS 502 Query: 485 DCDIIREILG 494 D + ++++ Sbjct: 503 DIVVAQQVIN 512 >gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2137] gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0031] gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0043] Length = 516 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6] gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis X98] gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6] gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis X98] Length = 508 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis ATCC 29200] gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0102] gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis ATCC 29200] gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0102] gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis OG1RF] Length = 513 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus ATCC 4796] gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus ATCC 4796] Length = 532 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 187/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A + GA V Y Sbjct: 43 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKSNGANCYVAEQPYPE-------GKGMHA 93 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 94 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISS 153 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 154 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 213 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI ++ +L + ++ + Sbjct: 214 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPD 273 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309 + + V + ++ F D+ + G+ Sbjct: 274 SIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGD 333 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T G + VDYAH S+ Sbjct: 334 FNESNGTAAIIGAGLAGLNHDQCAKGIRNVTI-PGRMQTERTKEHGM-VVVDYAHNKASM 391 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +++ ++ +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 392 MALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 451 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI DV+++ GKG + + + Sbjct: 452 AEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVDTPYPS 511 Query: 485 DCDIIREILG 494 D + ++++ Sbjct: 512 DIVVAQQVIN 521 >gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] Length = 501 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 226/475 (47%), Gaps = 22/475 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++AG FVA G DG ++ QA+AQGA A++V + A S I Sbjct: 26 LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVEADG----LQAFDLSGDRI 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SFQ 146 + + L A + + ++LAVTGT+GK++ A ++ + L+ Sbjct: 82 ASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCAL 141 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + + +TTP P+ L +A + QG+ ++EASS G+ +HRLDG K+ Sbjct: 142 VGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKIR 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ + R Sbjct: 202 VALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPTAVVNIDDAHGARLWARLQGRAM 259 Query: 266 RVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V SV QG K + T+ G L G++ V N L Sbjct: 260 DVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLAALRC 319 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---ITS 381 +G+ + L VPGR + + + VDYAHT ++LE L+ ++ Sbjct: 320 LGLTLEEAVAACAHLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQRQ 378 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE PE I +I+ G+ Sbjct: 379 GKLWCVFGCGGDRDNSKRPLMGQAAQANADGVFVTSDNPRSEVPESIIDQILAGMQAGET 438 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AI AI + +DV+++AGKGHE G + D + L Sbjct: 439 LHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAHKAL 492 >gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 499 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 117/502 (23%), Positives = 212/502 (42%), Gaps = 35/502 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F L+N + IN ++ S+ + G +F +I G EDGH +I +AI +GA A Sbjct: 5 FDTLMNLSIKHIFGPASQTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 + ++ +T S+ L VD+ RK ++ F+ + E + VTGT+GK++ Sbjct: 65 VF-GTSIEELRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTT 123 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTH 184 VA++V+ + L + IG T SS + + TTP + L K L ++G Sbjct: 124 VAAYVRSLLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEA 183 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SS +DQ R++ I TNL +H++YH+T + + K + + Sbjct: 184 AVMEVSSIAIDQQRVEDIYFDVAIHTNLSEEHLEYHKTFE---HYKKCKMKLFQQAKHAV 240 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I D K++ + + + K + + +G+ + Sbjct: 241 INIDDQDMGKDLSRLFEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAV 300 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G++ + N L A G + ++ L +L GRF+ V ++ +DYAH Sbjct: 301 PVYGDYNIANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVV-EGPNNQKVILDYAH 359 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +L +++ ++ + ++IV+ G RD K P M ++ AD IVT D+P D Sbjct: 360 TPVALTRLVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHD 419 Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG---------KGHE 470 P I +++ G R E + ++ + D++++ KG+E Sbjct: 420 PNVIVDQVMTGFSNPSASNIHRAPTRTEGVLKSLSLGKPNDIILLTSGCINGAQLVKGNE 479 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 D +II Sbjct: 480 ----------IPHSDEEIIASY 491 >gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4244] Length = 516 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11] gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11] Length = 508 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 112/505 (22%), Positives = 199/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR I A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDITAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ S D + + Sbjct: 481 DLYQKVNGVDEPYSGDFALAEAFIN 505 >gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4248] gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4248] Length = 511 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 200/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509 >gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM 13280] gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM 13280] Length = 518 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 130/492 (26%), Positives = 200/492 (40%), Gaps = 22/492 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L + R +I + DSR + +FV G ++ QA+A GA A V Y Sbjct: 25 LEDVRDEARGIEIAYATDDSRRVVPRTLFVC-KGAAFR-REYLLQALAAGAVAYVSEVDY 82 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 + + P ++V++ R L L A Y + A TGT GK++ A +++ Sbjct: 83 EVDG---EVGHEVPRVLVNDIRTALGLLADAAYDHPSGRVKVCAFTGTKGKTTSAYYLRS 139 Query: 136 ICQRSGL------SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 I + G D+ LTTP L + + +S G HV +EA Sbjct: 140 ILSEHAREMGRPVPALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEA 199 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIY 247 SS + R G+ G+FTN G DHI H T + Y +K+ LFE + Sbjct: 200 SSQAIKFRRTLGVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERCRVAVVNLDMD 259 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + S+ + + + T+ + + P P Sbjct: 260 VAERALAAAHASRTVERVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSP 319 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 F + NAL A A+GI + + L + + PGR E + S VDYAH Sbjct: 320 AVFNLSNALGAIACAEALGISADAIETGLSRAYA-PGRMELYPSESGRIMGVVDYAHNGM 378 Query: 368 SLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 SLE +L+++R R VVFG G + +R MG+ A LAD ++T+D+P EDP Sbjct: 379 SLETLLRDLRASYPDREFAVVFGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPEDPA 438 Query: 427 KIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I I G + +R EAIRTA+ + V++V GKG++ + + Sbjct: 439 LICDAIARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTGKGNDPFMLRNGVREP 498 Query: 482 MSVDCDIIREIL 493 D D +R L Sbjct: 499 YEPDGDQLRRAL 510 >gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0017] Length = 516 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] Length = 509 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 189/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 41 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 97 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + ++ G+TH+ +E SS R+ Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S + Sbjct: 268 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + + G +YVDYAH SL+ + Sbjct: 328 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN-GAHVYVDYAHNYLSLKTLLEFAK 386 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI EI I Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 446 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 447 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506 Query: 493 LG 494 + Sbjct: 507 IE 508 >gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1] gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1] Length = 508 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEIPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1112] gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus 30SC] gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1112] gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus 30SC] gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1118] Length = 523 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 109/490 (22%), Positives = 192/490 (39%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AY 252 G F N+ DH + H Y + K++L A D Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETAHFDEIYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + + + + + +K+ + D+ + G+ Sbjct: 265 SIYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKAKKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T S G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKSHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ ++ + +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMSFMQNEFDNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M DV+++ GKG + + Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + + ++ Sbjct: 503 DIVVAQNVIN 512 >gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2141] Length = 511 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509 >gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TUSoD Ef11] gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TUSoD Ef11] Length = 506 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504 >gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 487 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 126/491 (25%), Positives = 205/491 (41%), Gaps = 26/491 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I L + I + +S +Q +F+ G D H ++ QAI GA A++ + Sbjct: 3 IQALKRSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIAN 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFV 133 T+ + P++V ++ + L++ A + N + VTGT+GK++VA + Sbjct: 63 R---------TLHLDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCL 113 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 Q+ +S S++ + TTP + L + GV H +E SSH Sbjct: 114 NQMLNQSSTSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHA 173 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L Q R + L G TN+GRDH+DYH+T+ AY AK+++ + + A+I DD ++ Sbjct: 174 LAQDRAGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDR-IKPGGYAVINMDDPHA 232 Query: 254 KEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + R H + Q K++ + ++ GK +P Sbjct: 233 PAMFARCHGRVKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMP 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 F V N L A A G + L + GR +F N G VDYAH + Sbjct: 293 FLFNVENMLAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQTLN-NGATGLVDYAHNLD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L + +I T + V G GDR Q +G++ +D+ + T DNP D Sbjct: 352 GLARLFSDIPNQTFRHTLTVVGVTGDRIQDA-AAIGELCARYSDLVVFTMDNPLGIDQAD 410 Query: 428 IRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV---TNGEK 480 I + I +R EAI A +M K D++VV GKG ET ++ G + Sbjct: 411 IFRALTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGSETSQLISVNKQGLQ 470 Query: 481 KMSVDCDIIRE 491 D ++ + Sbjct: 471 DYIGDMPVLMQ 481 >gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners ATCC 55195] gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners ATCC 55195] Length = 519 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 107/493 (21%), Positives = 196/493 (39%), Gaps = 41/493 (8%) Query: 33 VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S DSR I+ +F G + ++ A GA V Y Sbjct: 37 ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPE-------GKGMH 86 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIG 148 L+V N K +SL ++ Y +++ +A TGT GK++ A F++ I + +G + Sbjct: 87 ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146 Query: 149 PT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------A 251 G F N+ DHI + H + Y + K++L A+ D Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNP 266 Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 S + R R + + + + + + ++ + G Sbjct: 267 DSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIG 326 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NA A G++ + ++ + + PGR E + T + G + VDYAH S Sbjct: 327 DFNEINATAAIIGAGLAGVNYQDCYDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKAS 384 Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ + + S +IIVV G GD+ +R + A+ +T D+P ED + Sbjct: 385 MIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQV 444 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + + +R +AI AI+ DV+++ GKG + + + Sbjct: 445 IADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYP 504 Query: 484 VDCDIIREILGLI 496 D + +E++ + Sbjct: 505 TDIKVAQEVINKL 517 >gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] Length = 501 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae P1031] gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae P1031] Length = 481 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHSSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii NCC 533] gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactobacillus johnsonii NCC 533] gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Lactobacillus johnsonii DPC 6026] Length = 523 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%) Query: 33 VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S DSR I+ +F G + ++ A GA V Y Sbjct: 37 ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 86 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144 LVV + K ++L ++ Y ++ ++A TGT GK++ A F++ + + S Sbjct: 87 ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206 Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DH + H Y + K++L A+ D + Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 266 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308 + + + + + + + G Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F N A G + + + + + PGR E + + + G + VDYAH S Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 384 Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ + R + +IIVV G GD+ +RP + AD A +T D+P EDP Sbjct: 385 MMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 444 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + +R +AI AI M +K D++++ GKG + + + Sbjct: 445 IAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 504 Query: 484 VDCDIIREILG 494 D + ++ Sbjct: 505 TDIKVAESVIN 515 >gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus coahuilensis m4-4] Length = 443 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 125/446 (28%), Positives = 206/446 (46%), Gaps = 24/446 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57 MKL L+ + +I+++ DSR ++ +++ + G + D H Sbjct: 1 MKLSHLLKDLTQYTLTGNPT-------IEISQIEMDSRRVKNQCMYICVPGIEGFLADRH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115 +I QAI GA AI+V + S+ ++ V++ R S A+ + + Sbjct: 54 DYIDQAIENGAHAILVEKEVD-------VPSHITVVRVEDVRLAFSKIATVFHNEAYKQL 106 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174 I+ +TGT+GK++ V+++ +GL + +G I+ L T P L + Sbjct: 107 KIIGLTGTNGKTTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNF 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231 + + + + + +E SS G+D R+ G+ G TNL DH+DYH T Y ++K Sbjct: 167 AKMVEEDMEYCVMEVSSQGIDMGRMKGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLF 226 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 EE ++ AI+ DD + +V Sbjct: 227 THLEEFEGEKPLAILNKDDDSYAYFKNASRGETISYGIDQDSIVQASELHFNKNGIHFKV 286 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T ++ + PL G+F VYNAL A + +G+ LE L +PGR E T Sbjct: 287 TNKRSLEEQEIHLPLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRME-SFT 345 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G + VDYAHT ++LE +L+++++ G++I V GCGG+RD+ KRPIMGKIA + +D Sbjct: 346 TANGVTVIVDYAHTPDALENVLQSLKSSLDGKLITVVGCGGNRDENKRPIMGKIAAECSD 405 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP 437 T DNPR E PE+I ++ G Sbjct: 406 YVYFTSDNPRFEQPEQILEGMVAGAK 431 >gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1039] gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1039] Length = 501 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 260 DLFQIPTITYGRLEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] Length = 501 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] Length = 509 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 41 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 97 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 150 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506 Query: 493 LG 494 + Sbjct: 507 IE 508 >gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Enterococcus faecium DO] gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] Length = 501 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLKFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498 Query: 493 LG 494 + Sbjct: 499 IE 500 >gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1341] Length = 516 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX0104] gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0470] gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX0104] gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0470] gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0309B] gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0309A] Length = 513 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis V583] gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1] gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis PC1.1] gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Enterococcus faecalis V583] gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1] gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis PC1.1] Length = 508 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii FI9785] gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii FI9785] Length = 523 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%) Query: 33 VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S DSR I+ +F G + ++ A GA V Y Sbjct: 37 ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 86 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144 LVV + K ++L ++ Y ++ ++A TGT GK++ A F++ + + S Sbjct: 87 ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206 Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DH + H Y + K++L A+ D + Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 266 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308 + + + + + + + G Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F N A G + + + + + PGR E + + + G + VDYAH S Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 384 Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ + R + +IIVV G GD+ +RP + AD A +T D+P EDP Sbjct: 385 MMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 444 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + +R +AI AI M +K D++++ GKG + + + Sbjct: 445 IAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 504 Query: 484 VDCDIIREILG 494 D + ++ Sbjct: 505 TDIKVAESVIN 515 >gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] Length = 585 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 136/513 (26%), Positives = 209/513 (40%), Gaps = 54/513 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR ++ G ++VA+ G + G F A+ GA ++ +A + ++ Sbjct: 55 VTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 113 Query: 90 TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L VD R A+R+YG ++ VTGT+GK++ + + + G S Sbjct: 114 VPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFLSAALLEALGRRSGI 173 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + LTTP L ++ + + V +E SSH + R+ G++ Sbjct: 174 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIAGLRYA 233 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264 FTNL +DH+D H + Q YF AK LF+ + + + M RA A Sbjct: 234 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAP 293 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL-------- 316 L++G + ++ D L Sbjct: 294 VTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGLPG 353 Query: 317 ------VAAGLCIAIGIDSALVLE-----------HLEKLHVVPGRFEFVGTNSRGGRIY 359 A + + + L+ VPGR E VG Sbjct: 354 RFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGREPD---AV 410 Query: 360 VDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VD+AH + + L+++ GR ++VFG GDRD+ KRP+MG IA AD+ I Sbjct: 411 VDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVI 470 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--------------FIEKGNRIEAIRTAIEMLNKQD 460 VTDD P SEDP IRA I+ G E +R AIR A+E+ QD Sbjct: 471 VTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRFAAIRRAVELAGPQD 530 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AG+GHET +GE D +RE L Sbjct: 531 GILLAGRGHETTMDY-DGELVPLDDRVALREAL 562 >gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 516 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 113/521 (21%), Positives = 203/521 (38%), Gaps = 43/521 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++ ++ + + + + VS DSR +Q +F G ++ Sbjct: 2 NISLNTCILILKEHHLLKSSAVQDTVQTIMEAVSYDSRDVQNNSLFFC-KGAGFRP-TYL 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A GA A V Y + L+V N K ++L ++ Y +++ + Sbjct: 60 TMAKENGAIAYVAEQPYPE-------GTGMHALIVRNVSKAMALLSAAFYSFPQDDLFLV 112 Query: 119 AVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F++ + Q +G + + + LTTP + L + Sbjct: 113 GFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRD 172 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKM 231 + G+TH+ +E SS + R+ G+ G F N+ DHI + H + Y + K+ Sbjct: 173 MRRAVDNGMTHMVMEVSSQAYKKSRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL 232 Query: 232 RLFEELLPKE-----------SPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFI 277 +L A + S + R + + Y+ Sbjct: 233 QLLVNSRKCIINAETDRFADVYAAATTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVET 292 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 L + ++ + G+F NA A G+ + + Sbjct: 293 DLAETKFTLTTASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIR 352 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ 396 + + PGR E V T G I VDYAH S+ +++ +R T+ R+IVV G GD+ Sbjct: 353 HVTI-PGRMETVTTQKHGL-IVVDYAHNKASMLALMRFMRREFTTPRVIVVVGAPGDKGI 410 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTA 452 +RP + AD A +T D+P E+ + I EI GI + + +R +AI+ A Sbjct: 411 SRRPGFSESLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEA 470 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I DV+++ GKG + + + + D I R+++ Sbjct: 471 ISEAGPDDVVLLCGKGADAFQKIRGVDTPYAGDIVIARQVI 511 >gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC 4200] gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC 4200] Length = 508 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] Length = 541 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 135/496 (27%), Positives = 224/496 (45%), Gaps = 35/496 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ +S DSR I G +++A+ G++ G F A+A GA AI+ A + SA Sbjct: 38 SKLQVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAILTDRAGAQIA-SAE 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + P+L V R A+++Y + ++ +TGT+GK++ + ++ I SS Sbjct: 97 VPQHVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSG 156 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + LTTP + ++ ++ + + V +E SSH L R+DG+ Sbjct: 157 LIGTIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVF 216 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D H T Y A + + A++ DD + +++ RA Sbjct: 217 DVAGFTNLTQDHLDLHGTMAEY--AATKAELFSSRRSKRAVVTVDDQWGRQIAARADVPV 274 Query: 265 CRVLSVGYQGKFIHLKKVC----------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 R+ + + F F LPGEF + N Sbjct: 275 LRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAERSFKFTTSLPGEFNIAN 334 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 + +A + A G+D+ + L++ VPGR + + VD+AH ++L+ Sbjct: 335 SALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLISQE---PVAVVDFAHNPDALQ 391 Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + +R + GR+I VFG G RDQ KRPIMG +A +D+ I+TDD+P EDPE+ Sbjct: 392 RAMDAVRPNNNETRGRLITVFGATGQRDQTKRPIMGALAARGSDVVIITDDDPHDEDPEQ 451 Query: 428 IRAEIIHGIPGFIE----------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IR ++ G ++ R AI A+ + K D +++AG+GHE V Sbjct: 452 IRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGKDDAILIAGRGHENWQEVQ- 510 Query: 478 GEKKMSVDCDIIREIL 493 G D D +R L Sbjct: 511 GVNIALDDRDELRRAL 526 >gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C150] gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C150] Length = 481 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 117/491 (23%), Positives = 203/491 (41%), Gaps = 30/491 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++F ++I+Q + W +S DSR + +F A G F+ A+ G Sbjct: 15 RNFRDIIDQ-DHYYYSWTGVTFEHLSYDSRDVTPSSLFFA-KGAGFK-REFLENAVKTGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 V Y + P ++V + ++ +SL A Y + + LA TGT GK Sbjct: 72 SFYVSEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A F I ++S + T+ + LTTP + L + +S G+TH+ Sbjct: 123 TTAAYFAYNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFRMMSEAVDNGMTHL 182 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS R+ G+ G F N+ DHI + F LL I Sbjct: 183 IMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLENSQAVI 240 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + V + + + H + D+ Sbjct: 241 VNSGMDHFDFVAEEVADKDHDFYGKDSENTVQHSSGFSFKAKGKLA--------GDYDIQ 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+F NA+ A C+ +G + + + + VPGR E + + G +++VDYAH Sbjct: 293 LIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVFVDYAHN 350 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424 +SL+ +L+ + GRI ++ G G++ + +R G + ++ I++ D+P ED Sbjct: 351 GDSLDKLLQVVTDHQKGRIALILGAPGNKGESRRKDFGHVLNTYPEVDVILSADDPNKED 410 Query: 425 PEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKM 482 P I EI I +R EAI+TA+ +D LV+AGKG + IV Sbjct: 411 PLTICQEIASHINREVRIIVDREEAIKTAMSETTGSKDALVIAGKGADAFQIVNGKHTDY 470 Query: 483 SVDCDIIREIL 493 + D ++ ++ L Sbjct: 471 AGDIEVAKKYL 481 >gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners DSM 13335] gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners DSM 13335] Length = 505 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 107/493 (21%), Positives = 196/493 (39%), Gaps = 41/493 (8%) Query: 33 VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S DSR I+ +F G + ++ A GA V Y Sbjct: 23 ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPE-------GKGMH 72 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIG 148 L+V N K +SL ++ Y +++ +A TGT GK++ A F++ I + +G + Sbjct: 73 ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 132 Query: 149 PT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 133 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------A 251 G F N+ DHI + H + Y + K++L A+ D Sbjct: 193 DLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNP 252 Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 S + R R + + + + + + ++ + G Sbjct: 253 DSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIG 312 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NA A G++ + ++ + + PGR E + T + G + VDYAH S Sbjct: 313 DFNEINATAAIIGAGLAGVNYQDCYDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKAS 370 Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ + + S +IIVV G GD+ +R + A+ +T D+P ED + Sbjct: 371 MIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQV 430 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + + +R +AI AI+ DV+++ GKG + + + Sbjct: 431 IADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYP 490 Query: 484 VDCDIIREILGLI 496 D + +E++ + Sbjct: 491 TDIKVAQEVINKL 503 >gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter chlorophenolicus A6] gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter chlorophenolicus A6] Length = 545 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 144/495 (29%), Positives = 223/495 (45%), Gaps = 29/495 (5%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + + ++ +SR ++AG ++VA+ G G F+ QA+ GA A++ A + Sbjct: 43 VPGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGARL 102 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQ 135 + + P+LVVD R + ++ +YG + VTGT+GK++ F+ Sbjct: 103 -LALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINS 161 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + G S IG + + LTTP + L+ + +G+ ++E SSH + Sbjct: 162 LLRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAI 221 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 R+DG+ FTNL +DH+D H T YF K LF + A++ DD + + Sbjct: 222 SYQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTP--ARARRAVVTVDDEWGR 279 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVY 313 + A + + G + T+ + LPG F V Sbjct: 280 RLAGTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTLKGPDGAELRLHTGLPGSFNVA 339 Query: 314 NALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 NA +AA + +A G+D V VPGR + V VD+AH +++L Sbjct: 340 NAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQLVAEQ---PAAVVDFAHNTDAL 396 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ +R R+IVVFG G RDQGKRP MG +A LAD I+TDD+P ED I Sbjct: 397 ARALEAVRPPAPDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAAAI 456 Query: 429 RAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 RA+++ G +E R EAIR A+E+ D ++VAG+GHE V G Sbjct: 457 RADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHEVWQEVK-G 515 Query: 479 EKKMSVDCDIIREIL 493 D +R L Sbjct: 516 VNLALDDRVELRSAL 530 >gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0860] gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0860] Length = 516 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol] gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol] Length = 508 Score = 226 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 478 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 221/473 (46%), Gaps = 21/473 (4%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +N+ ++S I+ +FV G DGH + QA+ +GA A++ + + Sbjct: 13 LKSLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPLDI----- 67 Query: 85 TIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P+++ D+ + L+L A + + VTGT+GK++V+ + QI ++ S Sbjct: 68 ----DIPVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQTTTS 123 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 ++ + ++ TTP + L ++ + +E SSH L Q R + Sbjct: 124 AYIGTLGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDRAGFVS 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L G TN+GRDH+DYH+T+ AY AK++L + + P + I D + + + + Sbjct: 184 LQIGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDPHAAAAIERASGRV 243 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + V + ++G+ FD +P F V NAL A + Sbjct: 244 NVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLL 303 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G S+ + L+ + GR +F+ N G VDYAH ++ L +L+++R T GR Sbjct: 304 SLGWQSSRIAAALQTIVAPDGRAQFLSLN-NGATGLVDYAHNADGLSKLLEDVRPYTKGR 362 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IE 441 +IVV G GDR Q +G + LAD A+ T DNP D E I + + E Sbjct: 363 LIVVTGVTGDRIQDA-SGIGVLCSQLADTAVFTSDNPMGVDQEDIFRALTSQVSKVPHFE 421 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EAI A ++ D++VV GKG ET ++NG+ D ++ +G Sbjct: 422 ISDRAEAIEFAKQLSVAGDLIVVCGKGSETHQYISNGK----GDR---QQYIG 467 >gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] Length = 509 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 41 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 97 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506 Query: 493 LG 494 + Sbjct: 507 IE 508 >gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] Length = 509 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 41 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 97 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLKFAK 386 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506 Query: 493 LG 494 + Sbjct: 507 IE 508 >gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii ATCC 33200] gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii ATCC 33200] Length = 509 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%) Query: 33 VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S DSR I+ +F G + ++ A GA V Y Sbjct: 23 ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 72 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144 LVV + K ++L ++ Y ++ ++A TGT GK++ A F++ + + S Sbjct: 73 ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 132 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 133 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192 Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DH + H Y + K++L A+ D + Sbjct: 193 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 252 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308 + + + + + + + G Sbjct: 253 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 312 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F N A G + + + + + PGR E + + + G + VDYAH S Sbjct: 313 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 370 Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ + R + +IIVV G GD+ +RP + AD A +T D+P EDP Sbjct: 371 MMALMSFMQREFNTPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 430 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + +R +AI AI M +K D++++ GKG + + + Sbjct: 431 IAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 490 Query: 484 VDCDIIREILG 494 D + ++ Sbjct: 491 TDIKVAESVIN 501 >gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Enterococcus faecalis 62] Length = 506 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504 >gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2134] gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0635] gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2134] gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0635] gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4000] gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0312] gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0645] gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0630] Length = 514 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 489 DLYQKVNGVDEPYAGDFALAKMII 512 >gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis T8] gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188] gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis T8] gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188] Length = 506 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504 >gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX1322] gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0411] gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX1322] gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0411] Length = 511 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509 >gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis HH22] gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis HH22] Length = 513 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEMPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae R6] gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae D39] gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP23-BS72] gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase [Streptococcus pneumoniae R6] gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae D39] gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP23-BS72] gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae INV104] gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA17545] Length = 481 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] Length = 527 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 231/471 (49%), Gaps = 17/471 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ V+ DSR + G ++ A+ G G F A+A GA A++ + + + Sbjct: 56 DVRVTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAAR---LAG 112 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 R P+LV D+ R+ L+ A+ +YG + +L VTGT+GK++ A + + +G ++ Sbjct: 113 RVAVPVLVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTT 172 Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T + TTP L + + +GVT +E SSH L QHR+D ++ Sbjct: 173 GLLGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVDALR 232 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNL +DH+D+H T + YF AK LFE K++ D + R Sbjct: 233 FTGAAFTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKDAVIC---VDDDWGRRLARQRPD 289 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + V + +G D LPG F + NAL A L Sbjct: 290 ARTYSVTGADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGALALLA 349 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ + E + L VPGR E V + VD+AHT +++ +L+ +R + +GR Sbjct: 350 ATGVPLEVAAEGISSLTGVPGRMERV-DGGQPFLAVVDFAHTPDAVVTLLEAVRPLVTGR 408 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439 +IVV GCGGDRD+GKRP+MG A LAD+A+ T+DNPRSEDP I +I+ G Sbjct: 409 VIVVLGCGGDRDRGKRPLMGAAAARLADLAVFTNDNPRSEDPAVILDQIVAGAREVAGAG 468 Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + + +R AI A+ D +VVAGKGHET V G D ++ Sbjct: 469 RFVVEPDRAAAIALAVAAAGPADAVVVAGKGHETGQNVA-GVITPFDDREV 518 >gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 516 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 190/489 (38%), Gaps = 41/489 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR +Q +F G ++ A GA A V Y + Sbjct: 34 VSYDSRDVQNNSLFFC-KGAGFRP-TYLTMAKENGAIAYVAEQPYPE-------GTGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ----QICQRSGLSSFQIG 148 L+V N K ++L ++ Y + P++ L + G +G + + Q +G + + Sbjct: 85 LIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLS 143 Query: 149 P----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 SVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE-----------SPAIIYADDA 251 G F N+ DHI + H + Y + K++L A + Sbjct: 204 DLGFFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNP 263 Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 S + R + + Y+ L + ++ + G Sbjct: 264 DSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIG 323 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NA A G+ + + + + PGR E V T G I VDYAH S Sbjct: 324 DFNETNATGAIIGAGLAGMSYEDCAKGIRHVTI-PGRMETVTTQKHGL-IVVDYAHNKAS 381 Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + +++ +R T+ R+IVV G GD+ +RP + AD A +T D+P E+ + Sbjct: 382 MLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESLTAEADKAYLTTDDPGFENAQD 441 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + + +R +AI+ AI DV+++ GKG + + + + Sbjct: 442 ICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRGVDTPYA 501 Query: 484 VDCDIIREI 492 D I R++ Sbjct: 502 GDIVIARQV 510 >gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase [Lactobacillus crispatus ST1] gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus ST1] Length = 523 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 104/490 (21%), Positives = 190/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252 G F N+ DHI ++ + + A + Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPD 264 Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S + R + + + + + + +K+ + D+ + G+ Sbjct: 265 SIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKKHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +++ +R +IIV+ G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M DV+++ GKG + + Sbjct: 443 AEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVVLICGKGADAFQKIRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + ++++ Sbjct: 503 DIVVAQQVIN 512 >gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 485 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 215/497 (43%), Gaps = 32/497 (6%) Query: 5 DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 DL+ K+F E+I + S + + +++S DSR +F + G G ++ Sbjct: 9 DLLKGDKNFREVIAEDSYY-YHYTGLNFSKLSYDSRDADNQTLFF-VKGANFKG-EYLQS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ QG +A + Y + P ++V++ + +S+ A Y + + LA Sbjct: 66 ALNQGLQAYISEVDYEV---------GIPAIIVNDIKHAMSIIAMAFYDNPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S ++ T+ ++LTTP + L K ++ S Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPNFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D ++K + ++ + Sbjct: 234 ENSRAVIINSDMDHFHILKEQVAKQ-------DHDFYGQASDNSITDSQAFTFKATGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ L G F NA+ A C+ +G + + + + VPGR E + G +++ Sbjct: 287 GNYRTLLIGRFNQENAIAAGLACLRLGASHEDIQKGIAQ-TTVPGRMEVLNHPC-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SLE ++ + G+I ++ G G++ + +R K+ + ++ I+T D Sbjct: 345 VDYAHNGDSLEKLVSVVEEHQKGQITLIIGSTGNKGESRRADFAKVINNHPNLSVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476 +P EDP+ I EI + + R +AI+ ++ ++D L++AGKG + IV Sbjct: 405 DPNFEDPQTISEEIASYVSRQLTIEVEREQAIKLGLQSCQEEEDALIIAGKGADAYQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + + D I + + Sbjct: 465 GQKTDYAGDYTIAKAFI 481 >gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 516 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/521 (21%), Positives = 198/521 (38%), Gaps = 45/521 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++ ++ + + + + VS DSR +Q +F G ++ Sbjct: 2 NISLNTCILILKEHHLLKSSAVQDTVQTRMEAVSYDSRDVQNNSLFFC-KGAGFRP-TYL 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A V Y + L+V N K ++L ++ Y + P++ L + Sbjct: 60 TMAKENGAIAYVAEQPYPE-------GTGMHALIVRNVSKAMALLSAAFY-RFPQDDLFL 111 Query: 121 TGTSGKSSVASFVQ----QICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172 G +G + + Q +G + + + LTTP + L + Sbjct: 112 VGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFR 171 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230 + G+TH+ +E SS ++R+ G+ G F N+ DHI + H + Y + K Sbjct: 172 DMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCK 231 Query: 231 MRLFEELLPKE-----------SPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKF 276 ++L A + S + R + + Y+ Sbjct: 232 LQLLVNSRKCIINAETDRFADVYAAATTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVE 291 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 L + ++ + G+F NA A G+ + + Sbjct: 292 TDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGI 351 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD 395 + + PGR E V T G I VDYAH S+ +++ +R T+ R+IVV G GD+ Sbjct: 352 RHVTI-PGRMETVTTQKHGL-IVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKG 409 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRT 451 +RP + AD A +T D+P E+ + I EI GI + + +R +AI+ Sbjct: 410 ISRRPGFSESLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKE 469 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 AI DV+++ GKG + + + + D I R++ Sbjct: 470 AISEAGPNDVVLLCGKGADAFQKIRGVDTPYAGDIVIARQV 510 >gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Kocuria rhizophila DC2201] gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Kocuria rhizophila DC2201] Length = 546 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 150/497 (30%), Positives = 234/497 (47%), Gaps = 40/497 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +SR +Q G ++ A+ G + G F A A GA A++ A A + + Sbjct: 46 VTGVVLNSREVQPGDLYAALPGAQVHGARFAADAAAAGAVAVLTDPAGERLLDEAGV--S 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP-----ENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+LV + R ++ A+ +Y HP + + AVTGT+GK++ F I + G ++ Sbjct: 104 LPVLVSEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGTNGKTTTTYFTTAILRALGHTT 163 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG +RLTTP ++ L+ + +G+T ++E SSH L+ HR+DG+ Sbjct: 164 GLIGTIEILAGDTPIPSRLTTPEAPHVHSLLALMRERGITATAMEVSSHALEFHRVDGVH 223 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262 FTNL +DH+D H + + YF AK +LF + ++ +D +S + +RA Sbjct: 224 YGVAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSRAVVVLSDEDPWSGAMARRAREE 283 Query: 263 -----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310 G G L+ + + + LPG+F Sbjct: 284 LGDANVTTVALRGSEDAERGQDAAQWTLRSLTRRGIGSAFVLRHRDGRELRVHTGLPGDF 343 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTS 366 V NA +A + + G++ + L++ VPGR E VGT VD+AH Sbjct: 344 NVANAALAVLMVLDSGVELETLQRALDEHDPLTASVPGRMELVGTRPT---SLVDFAHNP 400 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L L+++ GR+IVVFG G RD GKRP+MG++A + AD+ IVTDD+P +EDP Sbjct: 401 DALVRALRSVDP-EDGRVIVVFGATGQRDTGKRPVMGRVAAEEADVVIVTDDDPHAEDPA 459 Query: 427 KIRAE----------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 IR + + R AIRTA+ M +D ++VAG+GHETV V Sbjct: 460 PIREQVAAGAREAVAAGARATDVLVIAPRATAIRTAVRMARAEDSVIVAGRGHETVQDVA 519 Query: 477 NGEKKMSVDCDIIREIL 493 G D +RE L Sbjct: 520 -GVDVPLDDRVELREAL 535 >gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TX1467] Length = 511 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSIAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + V ++ + D + + I+ Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509 >gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis AR01/DG] gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ARO1/DG] Length = 508 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGIDEPYAGDFALAEAFIN 505 >gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC 25986] gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC 25986] Length = 505 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 128/506 (25%), Positives = 207/506 (40%), Gaps = 27/506 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL + Y + E + + P +++I + DSR ++ G +FV G ++ Sbjct: 8 KLTLMRYIELLEEDDLVVSRPSASCDQRIEFATDDSRQVRPGTLFVC-KGRAFK-REYLL 65 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 AIA GA A V Y + + P ++V + R+ L++ A YG + A Sbjct: 66 SAIADGAVAYVSEVDYDV---------DLPAVIVSDIRRTLAVVADAFYGHPSGKVKVCA 116 Query: 120 VTGTSGKSSVASFVQQICQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GKS+ + +++ I + G A ++LTTP L Sbjct: 117 FTGTKGKSTCSFYLRGILANEAKLTGCHRPALNTGIEFDDGIEAGPSKLTTPESFLLQSR 176 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 +++ + G + +EASS GL R I G+FTN+G DHI + + Sbjct: 177 IAHAAEAGAPWLVMEASSQGLKYERTGKIAFEVGAFTNIGEDHISPIEHP-TLEDYFASK 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + D + + + S+ + + + T+ Sbjct: 236 LKIFSQSRFAVVNLDMDKVDRVLEAASRCERTVTFSLTDERADVFALAIRNGDCGVVATV 295 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 D + P P +F V NAL A +GI + H + VPGR E + S Sbjct: 296 RTPRFTRDIVIPTPVKFNVSNALAAIACAEVLGIS-EEGIVHGFEGVFVPGRMELYPSVS 354 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412 VD+AH SLE +L+++R R + VVFG G + +R MG A AD Sbjct: 355 GKILGIVDFAHNGMSLETLLRDLRENYPERELAVVFGATGGKGVDRRTTMGIAAGKYADR 414 Query: 413 AIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ++T+D+P ED E I AEI G + +R+ AI A+ + V++V GK Sbjct: 415 IVITEDDPGPEDVEDICAEIARNVQAQGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTGK 474 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G E + NG + D I++ L Sbjct: 475 GEEERMLRKNGPEPCERDGSILKRTL 500 >gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0855] gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0855] Length = 513 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis HIP11704] gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis HIP11704] Length = 508 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q + I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] Length = 490 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 133/505 (26%), Positives = 212/505 (41%), Gaps = 30/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL + + + ++ V+ ++ +Q G FVAI G K DGH F+ Sbjct: 1 MRLSDLAA-----ALQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFM 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 Q + A + + S P L V N R L+ A+ L G ++ Sbjct: 56 EQ------AQAAGAVAVLGEGLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174 VTGT GK++ + + + + +GL++ + TTP + L Sbjct: 110 GVTGTDGKTTTSWLTRHLLRSAGLATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTL 169 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + G +EASSH L R+ G+ +T+L +H+D+H T Y Sbjct: 170 REMVAAGAQATVLEASSHALSLDRVRGVDWDVAVWTHLSSEHLDFHGTLDNY----FADK 225 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 +L+ + A++ DD ++ ++ R G S Q + + H+ + Sbjct: 226 RKLVERARFAVLNVDDPWTAQL--RGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVV 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 DF P+ G F V NAL +G + + L VPGR E V + Sbjct: 284 SPAGDFQAELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPGRMELVPGGAT 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413 R+ VD+AHT SLE L +R T+G + VV G G RD KR +G++A LAD A Sbjct: 344 SPRVIVDFAHTPPSLEKALGTLRATTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHA 403 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T+++ R + I E+ G F+ G+R EAIR A+ D +++AGKG Sbjct: 404 ILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAGKG 463 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 E E + R +L Sbjct: 464 PEDTLERAT-ETLPWNEVAEARAVL 487 >gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis SK321] gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis SK321] Length = 481 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + DSR + +F + G F+ Sbjct: 9 DILKKDGLFREIIDQ-GYYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI+QG V Y + P ++V + +K +SL A YG + + LA Sbjct: 66 AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVADQDHDFYGSQSNN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + IV Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKEVYPGDAAVAENYL 481 >gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0109] gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0109] gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1302] Length = 516 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGITATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] Length = 552 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 127/506 (25%), Positives = 228/506 (45%), Gaps = 25/506 (4%) Query: 8 YKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +D EL + + + E + ++ + ++AG FVAI G G F A + Sbjct: 20 QRDLAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAER 79 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL----AVTG 122 GA A++ + + + PI++V++ R L ++ +YG P++ + A TG Sbjct: 80 GAVAVITDAEGA----EIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTG 135 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+GK+SV+ ++ I + G+ + + +RLTTP L+ + +G Sbjct: 136 TNGKTSVSHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERG 195 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V V+VE S+ L +HR+DG+ FTNL DH+D + + YF AK+ LF + Sbjct: 196 VEAVAVEVSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARR 255 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----ISVEG 297 + + ++ V + +Q+ T + +G Sbjct: 256 GVVCLDSASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDG 315 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFVGTNSR 354 + + P+ G NA +A + + G L+ +PGR + V + Sbjct: 316 RALTTVVPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLV-SGPE 374 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +YVD+ H+ ++ E L +R +T G+++++FG GDRD KR MG+ A+ +DI + Sbjct: 375 GPAVYVDFGHSPDAFEKTLAAVRRVTPGKVVMLFGADGDRDATKRHDMGRTAVLGSDILV 434 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 VTD +PR EDP+ IRA ++ G +E AI A++++ + D ++ AG G Sbjct: 435 VTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVKLVGEGDAILWAGPG 494 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 H+ + G + ++ R L Sbjct: 495 HQDYRDI-RGVRTPYSARELSRRALR 519 >gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi] Length = 523 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 113/506 (22%), Positives = 185/506 (36%), Gaps = 55/506 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G +F A+ G G +I AI GA AIV T Sbjct: 25 DVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVV 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 V + R LS A+ Y ++ VTGT GKSS SF+ Q+ + G Sbjct: 79 GVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138 Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201 I TTP + + + L+ + +EASSHGL RL Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + N+ +H+++H + + Y K +F L + ++ + A Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------------------------- 295 R + F + Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTVQE 318 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFV 349 +D +P E +AA + G A +H++ + + GR + V Sbjct: 319 PAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRV 378 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + + +DYAHT +S E IL R++V+FG G+RD KR + G IA Sbjct: 379 DMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQGAIA 437 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQD 460 A + ++TD++PR EDP I I G +R+ A+R + QD Sbjct: 438 SRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQD 497 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDC 486 ++++ GKGHE I + + + Sbjct: 498 LVLLLGKGHEHSIIYAHTVQPYDEER 523 >gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus acidilactici DSM 20284] gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus acidilactici DSM 20284] Length = 507 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 116/518 (22%), Positives = 200/518 (38%), Gaps = 42/518 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ + L + ++ + + ++ DSR ++ G +F G+ E + Sbjct: 1 MKLE--LGTVRTVLAEHHLLKKIESSTTTVNSGITYDSRKVRPGDMFFC-KGSFE--PAY 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 + A GA V Y + ++V N + +++ ++ Y + I Sbjct: 56 LKAAREAGATTYVAEREYPE-------GTGMTAIIVTNVTRAMAVLSATYYEFPQNDLFI 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 + +TGT GK+S A F I + S + LTTP + L Sbjct: 109 IGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRIVGPRPEDQFKSDLTTPESMDLFH 168 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G+ ++ +E SS + R+ G+K G F N+ DHI ++ + + Sbjct: 169 DMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIFLNITPDHIGRNEHKDFEDYLHCK 228 Query: 233 LFEELLPKESP-------------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 L + K A D + G + + L Sbjct: 229 LQLMVNSKRCIIDADTNRFEDVYGAARATTDPKQIYLFSADPANG--GVDYTIKNAEDDL 286 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 T ++ + G++ NA A G D L+ L ++ Sbjct: 287 INNRFTIAATSSTKPALAITGEYDLNVAGDYNQSNATAAIIAAALAGADRDAALKPLSEI 346 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398 + PGR E++ G ++VDYAH SL +LK ++ G+ IVV G GD+ + Sbjct: 347 VI-PGRMEYLAIPGHGV-VFVDYAHNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISR 404 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIE 454 R GK + AD+A +T D+P EDP+ I A+I+ I + +R EAIR AI Sbjct: 405 RAGFGKALSEQADVAYLTTDDPGFEDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIV 464 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++V+AGKG + V + D + +E+ Sbjct: 465 ESGPHDIVVLAGKGEDPYQKVRGVDTPWPTDMGVAQEV 502 >gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici 7_4] gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici 7_4] Length = 507 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 114/519 (21%), Positives = 200/519 (38%), Gaps = 44/519 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGH-- 57 MKL+ + L + ++ + + ++ DSR ++ G +F G+ Sbjct: 1 MKLE--LGTVRTVLAEHHLLKKIESSTTTVNSGITYDSRKVRPGDMFFC------KGNFE 52 Query: 58 -LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 ++ A GA V Y + ++V N + +++ ++ Y + Sbjct: 53 PAYLKAAREAGATTYVAEREYPE-------GTGMTAIIVTNVTRAMAVLSATYYEFPQND 105 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIY 169 I+ +TGT GK+S A F I + + T + LTTP + Sbjct: 106 LFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRIVGPRPEDQFKSDLTTPESMD 165 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYF 227 L + G+ ++ +E SS + R+ G+K G F N+ DH + H+ + Y Sbjct: 166 LFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIFLNITPDHIGRNEHKDFEDYL 225 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------SVGYQGKFIH 278 + K++L A + + + Sbjct: 226 HCKLQLMVNSKRCIIDADTNRFEDVYGAAKATTDPKQIYLFSADPANGGVDYTIKNAEDD 285 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 L T ++ + G++ NA A G D L+ L + Sbjct: 286 LINNRFTIAAISSTKPALAITGEYDLNVAGDYNQSNATAAIIAAALAGADRDAALKPLNE 345 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQG 397 + + PGR E++ G ++VDYAH SL +LK ++ G+ IVV G GD+ Sbjct: 346 IVI-PGRMEYLAIPGHGV-VFVDYAHNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGIS 403 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI 453 +R GK + AD+A +T D+P EDP+ I A+I+ I + +R EAIR AI Sbjct: 404 RRAGFGKALSEQADVAYLTTDDPGFEDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAI 463 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++V+AGKG + V + D + +E+ Sbjct: 464 VESGPHDIVVLAGKGEDPYQKVRGVDTPWPTDMGVAQEV 502 >gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus ultunensis DSM 16047] gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus ultunensis DSM 16047] Length = 523 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 39/490 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR IQ +F G ++ A GA V Y Sbjct: 34 VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149 L+V + K ++L ++ + ++ ++A TGT GK++ A F++ + Q +G + I Sbjct: 85 LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144 Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI ++ +L + ++ Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETAHFNEIYAAATTTTNPD 264 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309 + + KV + ++ F D+ + G+ Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKARKLDINGDYTLKMLGD 324 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G++ + + + + PGR + T S G + VDYAH S+ Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKSHGM-VVVDYAHNKASM 382 Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 ++ ++ +IIVV G GD+ +RP + AD A +T D+P EDP+ I Sbjct: 383 MALMSFMQNEFNDPKIIVVVGAPGDKGISRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI GI + +R +AI AI M +DV+++ GKG + V Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKDVVLICGKGADAFQKVRGVNTPYPS 502 Query: 485 DCDIIREILG 494 D + ++++ Sbjct: 503 DIVVAQKVIN 512 >gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] Length = 509 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 190/482 (39%), Gaps = 27/482 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 41 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 97 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + ++ G+TH+ +E SS R+ Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G K + S + Sbjct: 268 DLFQIPTITYGRSEKSNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 327 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 328 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI EI I Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 446 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ QD +V+AGKG + + ++ D I++ + Sbjct: 447 TNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506 Query: 493 LG 494 + Sbjct: 507 IE 508 >gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1346] Length = 516 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 523 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 156/483 (32%), Positives = 227/483 (46%), Gaps = 29/483 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ S + G ++ A+ G + G + A A+GA A++ + + Sbjct: 39 VTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGREE----AAATG 94 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+ VVD+ R L A+R+YG+ ++ +TGT+GK++ + V+ +G + + Sbjct: 95 LPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTGLV 154 Query: 148 GPT----------STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G T + + TTP L L+ ++ GV V +E SSH L Sbjct: 155 GTVETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARMADSGVQTVVMEVSSHALVLG 214 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ GI A FTNLGRDH+D+H + YF AK RLF+ E DD Y + + Sbjct: 215 RVGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDGRAAVEVV---DVDDPYGRRLA 271 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNA 315 + +S + A T+S G LPG F V NA Sbjct: 272 GMLGDRRAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLPGAFNVANA 331 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 ++A L A+G+ L L + VVPGR E V VDYAHT +++ L Sbjct: 332 VLAVALLDAVGVPVETALTGLAE-TVVPGRMEPVDAGQ-PFVAVVDYAHTPDAVATALAA 389 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R T GR++ V GCGGDRD GKR MG+ A +D+ +VTDDNPRSEDP IRA ++ G Sbjct: 390 LRAATPGRVLTVLGCGGDRDPGKRAAMGEAAARGSDLLVVTDDNPRSEDPAAIRAAMLAG 449 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +P +E G+R AI A+ D ++VAGKGHET V G D ++R Sbjct: 450 VPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKGHETGQDVA-GTLHPFDDRAVLR 508 Query: 491 EIL 493 E L Sbjct: 509 EAL 511 >gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 483 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 197/468 (42%), Gaps = 13/468 (2%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +D+R ++ G ++V + DG F+ QA A GA A ++ S+ + P Sbjct: 25 GIETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESSDEDVHGGQ----DHP 80 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + R L + R Y + G +G + +S + I + + + IG Sbjct: 81 VWQSPKARTLLGMALRRWYRWDEGLAPVIVGVTGTNGKSSVTRLIAELAPQPAMIIGTLG 140 Query: 152 TISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 TTP P+ L + ++ L QG +++E SSH L R+ + A FT Sbjct: 141 HGRVDALISQANTTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAVFT 200 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+D+H Y + D + A R L Sbjct: 201 NLSRDHLDFHGDMARYG---ASKTRLFQTPGLRLAVLNGDDAFTGQIAAAMAPEVRQLRF 257 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + + PL G V N L A +G + Sbjct: 258 GVGSGDYQAVALHPGASGTLLDLRTPAGSRRIRSPLIGNSNVQNLLAALATAEGMGWPVS 317 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 L GR++ + ++ +DYAHT ++L +L ++R + G + VVFGC Sbjct: 318 DAAIAGLDLP--EGRYQRLAPVPGKAQVMIDYAHTPDALRRVLTDLREVAKGAVTVVFGC 375 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIE 447 GGDRD+GKRP MG+IA LAD I+TDDNPRSE PE I +I+ G+ +R Sbjct: 376 GGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQATVIHDRAA 435 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 AIR AI D +++AGKGHE + + + D D+ E L + Sbjct: 436 AIRAAIAASRAGDWVLIAGKGHERTQEIMGQRQPVPQDRDVATEALRV 483 >gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus vestibularis F0396] gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus vestibularis F0396] Length = 481 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F ++I+Q + + W + +S DSR + +F A G F+ Sbjct: 9 EVLKKDHNFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G V Y + P ++V + ++ +SL A Y + + LA Sbjct: 66 AVQAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ + LTTP + L + ++ Sbjct: 117 TGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSNLTTPESLDLFRMMAEAVD 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + F LL Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLIFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + V + + + H + Sbjct: 235 NSRAVIVNSGMNHFGFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D+ L G+F NA+ A C+ +G + + + + VPGR E + + G +++ Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEILTQAN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + ++ ++ D Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+TA+ + +D +V+AGKG + IV Sbjct: 405 DPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 465 GKRTDYAGDIEVAKKYL 481 >gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus vestibularis ATCC 49124] gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus vestibularis ATCC 49124] Length = 481 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 209/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F ++I+Q + + W + +S DSR + +F A G F+ Sbjct: 9 EVLKKDHNFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G V Y + P ++V + ++ +SL A Y + + LA Sbjct: 66 AVQAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ + LTTP + L + ++ + Sbjct: 117 TGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSTLTTPESLDLFRMMAEAVA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + F LL Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + V + + + H + Sbjct: 235 NSRAVIVNSGMNHFGFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D+ L G+F NA+ A C+ +G + + + + VPGR E + + G +++ Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEILTQAN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + ++ ++ D Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+TA+ + +D +V+AGKG + IV Sbjct: 405 DPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 465 GKRTDYAGDIEVAKKYL 481 >gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0012] Length = 513 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 109/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G + +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP +I EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAEICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1342] Length = 516 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R++ +S DSR + A +F G +++ A Sbjct: 22 KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 80 VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKVMAVLSMAFYDYPQNKLKLIGFT 131 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R GR+IV+ G GD+ +R G++ +LAD+A Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513 >gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS69] gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae Hungary19A-6] gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CCRI 1974] gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CCRI 1974M2] gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS69] gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae Hungary19A-6] Length = 481 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus equinus ATCC 9812] gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus equinus ATCC 9812] Length = 483 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 122/500 (24%), Positives = 211/500 (42%), Gaps = 35/500 (7%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K +F E+I +++S DSR + + +F A G ++ Q Sbjct: 9 DILKKDHNFREIIFHNHYSLDWEENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120 A+ G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AVQLGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFTYNILKQSHKPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVD 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G+F N+ DH H T + YF K L Sbjct: 178 NGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMTNS 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + +++V + H+ + V Sbjct: 238 KAVVVNAGMDYFKVVTQQVADKPHDFYGSGSENTIENGRAFDFDVTGKLA---------- 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F NAL A C+ +G + + + + VPGR E V + G + Sbjct: 288 --GHYDIQLIGSFNQENALAAGLACLRLGTSLKDIKKGISE-TSVPGRMEVVTQAN-GAK 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 ++VDYAH +SLE +L + G++ ++ G G++ + +R +I ++ I+T Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGQLYLILGATGNKGESRRADFARIINAHQNLNVILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+P EDP+ I EI I ++ +R +AI A+ + + D +++AGKG + I Sbjct: 404 ADDPNYEDPQAIAEEIASQITRSLDIQVDREKAIAKAMLLTKNENDAVIIAGKGADAYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V + D +I ++ L Sbjct: 464 VNGERTAYAGDLNIAKKYLN 483 >gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 483 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 207/500 (41%), Gaps = 35/500 (7%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ +F E+I +++S DSR +F A G ++ Q Sbjct: 9 DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G+F N+ DH H T + YF K L Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + + +++V H+ + + V Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F NA+ A C+ +G A + + + + VPGR E + + G + Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 ++VDYAH +SLE +L + G + ++ G G++ + +R ++ + I+T Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474 D+P EDP+ I EI + ++ +R +AI A+ N + D +++AGKG + I Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V + D +I + L Sbjct: 464 VNGERTVYAGDLNIAKNYLN 483 >gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] Length = 434 Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 127/484 (26%), Positives = 200/484 (41%), Gaps = 61/484 (12%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + I ++ K +S DSR + F +K ++ +A +G + V Sbjct: 1 MKIVLEDSKDFKF--LSDDSREVSKDCAFFVTQSSK----KYLKEAQEKGCKFFVTPK-- 52 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 +S L K + +TGT+GK++ A+ + I Sbjct: 53 --------------------------ELSSYL--KLNLQCIGITGTNGKTTTAAMIYSIL 84 Query: 138 QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G +G + LTTPS + + A++ +G +E SSH + Sbjct: 85 LDMGYKVGLLGTRGFFINGIQKRPKGLTTPSTLEIYTAINEAKQEGCEFFVMEVSSHAIT 144 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R++G++ TN+ DH+DYH+T + Y K S D + Sbjct: 145 QNRIEGLEFALKILTNITSDHLDYHKTLENYIATK----------NSFFSNPNDKKLINK 194 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K A L+ G + K ++ I+ + PL G+ +YNA Sbjct: 195 DEKNAQYPLQNTLTYGIESTSTFSIKAYSLKGGITAQITYGSQVATLDSPLLGKHNLYNA 254 Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G + + LE V GR + ++ I VD+AHT + +E I + Sbjct: 255 LAAIGAVQMLTQKPLQEIANQLENFGGVMGRMQI---INQKPLIVVDFAHTEDGMEQIFQ 311 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + +I V+FG GGDRD+ KRP MG A A +T DNPR+EDP+ I EI+ Sbjct: 312 S---FLHQKIAVLFGAGGDRDKTKRPKMGFCASKYAQKIYITSDNPRNEDPKTIMQEILS 368 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 GIP I + NR AI+ AI L + +VL+V GKG ET I+ + D + I Sbjct: 369 GIPQSKRSRVILEENRALAIQKAIAELKEDEVLLVLGKGDETYQIIGD-RTLHFDDSEEI 427 Query: 490 REIL 493 ++ L Sbjct: 428 KKAL 431 >gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA41317] Length = 481 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 209/497 (42%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V++ ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLREQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI + I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae G54] gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae G54] Length = 481 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis D182038] Length = 370 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 125/371 (33%), Positives = 172/371 (46%), Gaps = 12/371 (3%) Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q Q G +S +G TT S + + L L QG T ++E S Sbjct: 1 MLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVS 60 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL Q R+ + A FTNL RDH+DYH +Y AK LF + ADD Sbjct: 61 SHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADD 118 Query: 251 AYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + A + G+ G ++ KV N + + + L Sbjct: 119 DVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRL 178 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N LVA + G A +L L V GR E + VDYAHT Sbjct: 179 MGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTP 237 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ Sbjct: 238 DALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQ 297 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A+I+ G+ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 298 AIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY- 356 Query: 484 VDCDIIREILG 494 D + +LG Sbjct: 357 SDRVTVARLLG 367 >gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC0288-04] gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC0288-04] Length = 481 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + I+ Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGVDCYQIIQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKESYPGDTAVAENYL 481 >gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1] gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1] Length = 480 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 108/482 (22%), Positives = 193/482 (40%), Gaps = 27/482 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F G +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141 ++V + +K +++ + Y + + TGT GK++ A F + I + Sbjct: 65 ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + ++ + LTTP + L + ++ + G+TH +E SS +R+ Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317 + G Q I G + Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A + + S + VPGR E + TN+ G +YVDYAH +SL+ +L +R Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355 Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI EI I Sbjct: 356 EEHSDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415 Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R EAI A+ + D +V+AGKG + V ++ + D + Sbjct: 416 TKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475 Query: 493 LG 494 + Sbjct: 476 IN 477 >gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri 202-4] gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri JV-V03] gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri 202-4] gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri JV-V03] Length = 523 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 106/527 (20%), Positives = 193/527 (36%), Gaps = 45/527 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + + N +S DSR I+ +F G + Sbjct: 1 MSDSSISLNTCILILKEHHLLKSSAVQDAVPTKMNYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y LVV + K ++L ++ Y + Sbjct: 60 --TYLSMAKDSGATCYVAEQPYPE-------GKGMHALVVRDVTKAMALLSAAFYRFPQD 110 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGL-----SSFQIGPTSTISSFAQDNRLTTPSPI 168 + ++A TGT GK++ A F++ + + S + LTTP + Sbjct: 111 DLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDDIVGPKPEDKFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DH + H Y Sbjct: 171 DLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K++L A+ D + + + + + Sbjct: 231 LHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNPDSIYLFARNDFENPNLKQPIDFRF 290 Query: 287 NKQQVTISVEGKDFDF--------------LFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + G+F N A G A Sbjct: 291 QSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGDFNEMNGTAAIIGAGLAGESYAEC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + + + + PGR E + + + G + VDYAH S+ ++ + R + +IIVV G Sbjct: 351 AKGIRHVTI-PGRMETLPSKNHGT-VIVDYAHNKASMIALMSFMQREFNNPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +RP + A+ A +T D+P EDP I EI GI + +R + Sbjct: 409 GDKGVSRRPGFSESLTAYANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AI AI M NK D++++ GKG + + + D + ++ Sbjct: 469 AIHDAIAMSNKDDIVLICGKGADPFQKIRGVDTPYPTDIKVAESVIN 515 >gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 516 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 189/489 (38%), Gaps = 41/489 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR +Q +F G ++ A GA A V Y + Sbjct: 34 VSYDSRDVQNNSLFFC-KGAGFRP-TYLTMAKENGAIAYVAEQPYPE-------GTGMHA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ----QICQRSGLSSFQIG 148 L+V N K ++L ++ Y + P++ L + G +G + + Q +G + + Sbjct: 85 LIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLS 143 Query: 149 P----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 SVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE-----------SPAIIYADDA 251 G F N+ DHI + H + Y + K++L A + Sbjct: 204 DLGFFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNP 263 Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 S + R + + Y+ L + ++ + G Sbjct: 264 DSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIG 323 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NA A G+ + + + + PGR E V T G I VDYAH S Sbjct: 324 DFNETNATGAIIGAGLAGMSYEDCAKGIRHVTI-PGRMETVTTQKHGL-IVVDYAHNKAS 381 Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + +++ +R T+ RIIVV G GD+ +R + AD A +T D+P E+ + Sbjct: 382 MLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSESLTAEADKAYLTTDDPGFENAQD 441 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI GI + + +R +AI+ AI DV+++ GKG + + + + Sbjct: 442 ICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRGVDTPYA 501 Query: 484 VDCDIIREI 492 D I R++ Sbjct: 502 GDIVIARQV 510 >gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri ATCC 33323] gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri 224-1] gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC 33323] gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri 224-1] Length = 523 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 106/527 (20%), Positives = 193/527 (36%), Gaps = 45/527 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAI-VGNKED 55 M + ++ + + + + N +S DSR I+ +F G + Sbjct: 1 MSDSSISLNTCILILKEHHLLKSSAVQDAVPTKMNYISYDSRDIKTNTLFFCKGKGFRP- 59 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 ++ A GA V Y LVV + K ++L ++ Y + Sbjct: 60 --TYLSMAKDSGATCYVAEQPYPE-------GKGMHALVVRDVTKAMALLSAAFYRFPQD 110 Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGL-----SSFQIGPTSTISSFAQDNRLTTPSPI 168 + ++A TGT GK++ A F++ + + S + LTTP + Sbjct: 111 DLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDDIVGPKPEDKFKSSLTTPESL 170 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226 L + + G+TH+ +E SS ++R+ G+ G F N+ DH + H Y Sbjct: 171 DLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADY 230 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + K++L A+ D + + + + + Sbjct: 231 LHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNPDSIYLFARNDFENPNLKQPIDFRF 290 Query: 287 NKQQVTISVEGKDFDF--------------LFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + G+F N A G A Sbjct: 291 QSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGDFNEMNGTAAIIGAGLAGESYAEC 350 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + + + + PGR E + + + G + VDYAH S+ ++ + R + +IIVV G Sbjct: 351 AKGIRHVTI-PGRMETLPSKNHGT-VIVDYAHNKASMIALMSFMQREFNNPKIIVVVGAP 408 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 GD+ +RP + A+ A +T D+P EDP I EI GI + +R + Sbjct: 409 GDKGVSRRPGFSESLTAYANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREK 468 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AI AI M NK D++++ GKG + + + D + ++ Sbjct: 469 AIHDAIAMSNKDDIVLICGKGADPFQKIRGVDTPYPTDIKVAESVIN 515 >gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 314 Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 7/311 (2%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-I 245 +E SSH Q R+ G+ G FTNL +DH+DYH+ ++YF AK F+ +L K A Sbjct: 1 MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + E + R V+S G + + + + T+S +GK F+ Sbjct: 61 SINVDDFYGERLYRQLKNIANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYSK 120 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+F +YN A GID + E KL + GRFE V + + DYAHT Sbjct: 121 LRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRGRFEIVYSK--DFLVVNDYAHT 178 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE ILK+I+ + GR+IVVFG GGDRD+ KRP MGKIA +LAD+ ++T DNPRSEDP Sbjct: 179 PDALENILKSIQKLKRGRLIVVFGAGGDRDKTKRPKMGKIAEELADVIVLTSDNPRSEDP 238 Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + I I G+ +E +R +AI+ AI+M + DV+++AGKGHET I+ + Sbjct: 239 KDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKGHETYQIIGDN-IYH 297 Query: 483 SVDCDIIREIL 493 D D+ ++ L Sbjct: 298 FDDSDVAKKYL 308 >gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Streptococcus gallolyticus UCN34] gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus gallolyticus UCN34] Length = 483 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 203/498 (40%), Gaps = 31/498 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ +F E+I +++S DSR +F A G ++ Q Sbjct: 9 DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G+F N+ DHI + + LL Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPI---EHPTFEDYFYHKRLLM 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A++ ++ + + + + Sbjct: 235 ANSKAVVVNAGMDYFNIVAQQVANTP-------HDFYGKGSDNTIENGRAFDFDVTGKLA 287 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G A + + + + VPGR E + + G +++ Sbjct: 288 GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAKVF 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418 VDYAH +SLE +L + G + ++ G G++ + +R ++ + I+T D Sbjct: 346 VDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTAD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP+ I EI + ++ +R +AI A+ N + D +++AGKG + IV Sbjct: 406 DPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIVN 465 Query: 477 NGEKKMSVDCDIIREILG 494 + D +I + L Sbjct: 466 GERTAYAGDLNIAKNYLN 483 >gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 518 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 37/503 (7%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L + +R+ V +S+ +Q+ +F G ++ +AI +GA A V Sbjct: 23 HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +Y ++ L+V N ++ ++L ++ YG + + +TGT GK+S A F Sbjct: 81 SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131 Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + TS ++LTTP + L + L G+TH+ +E S Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 S R+ + G F N+ DH+ ++ + L D Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + A ++ G G L I + + + Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311 Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Y + VA A +C AIG ++ + GR E + T G +YV Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370 Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415 DYAH S++ +L ++ +I VV G G++ +RP +GK A + + I+ Sbjct: 371 DYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T D+P EDP+ I AEI I +R EAI TAI+ D++V+AGKG + Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V + D + R+++ Sbjct: 491 QYQKVAGVDTPYPGDIAVARQVI 513 >gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Frankia sp. CcI3] gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Frankia sp. CcI3] Length = 544 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 153/482 (31%), Positives = 236/482 (48%), Gaps = 19/482 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSA 84 + ++ V+ DS ++ G + A+ G G F A+A GA A++ + + + Sbjct: 67 DVIVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAAMPP 126 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 P+LV D+ R+ L+ A+R+YG +L VTGT+GK++ A + + +G Sbjct: 127 GPPGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGH 186 Query: 143 SSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++ IG T + + TTP L L+ + +GV ++E SSH L HR D Sbjct: 187 TTGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADA 246 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL +DH+D+H + + YF AK LF+ + + A+I D + + + +R Sbjct: 247 LHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLFDP--ARTAVAVIGVADRWGRRLAERHP 304 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320 A + + V + D PLPG F V N L A Sbjct: 305 GAITFAV---EGPADWTARDVSYGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTLGALA 361 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +AIG+ A + L VPGR E V VD+AHT +++ +L+ +R + Sbjct: 362 LLVAIGVPPATAAAGIGSLPGVPGRMERVDAGQ-PFLALVDFAHTPDAVTTLLETVRPLV 420 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 GR+IVV GCGGDRD+GKRP+MG A LAD+AI+T+DNPRSEDP +I A+++ G+ Sbjct: 421 KGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTALS 480 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R AI A+ QD +VVAGKGHE+ G D +R L Sbjct: 481 ASATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVALRAALS 539 Query: 495 LI 496 + Sbjct: 540 SV 541 >gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Frankia alni ACN14a] gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Frankia alni ACN14a] Length = 476 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 233/470 (49%), Gaps = 17/470 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFSATIRS 88 + V+ DSR + G ++ A+ G G F AIA+GA A++ + + + + Sbjct: 2 VRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPAA 61 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LV + R+ L+ A+R++G +L VTGT+GK++ A + + +G ++ Sbjct: 62 ALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 121 Query: 147 IGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T + + TTP L L+ + +GV ++E SSH L QHR D + Sbjct: 122 IGTVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADALHFA 181 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+D+H T YF AK LF + + A+I D + + + R Sbjct: 182 GALFTNLSQDHLDFHPTMADYFEAKASLFVP--GRAAAAVIGVGDEWGRRLAARRP--DA 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +V + + + G+ + PLPG F + NAL A L +A+ Sbjct: 238 VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALALLVAV 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+D A + L VPGR E V VD+AHT +++ +L +R + GRII Sbjct: 298 GVDPAAAAAGIGALPGVPGRMERVDAGQ-PFLALVDFAHTPDAVTTLLATVRPLVKGRII 356 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------G 438 VV GCGGDRD+GKRP+MG A LAD+AI+T+DNPRSEDP I A ++ G+P Sbjct: 357 VVLGCGGDRDRGKRPLMGAAAATLADLAILTNDNPRSEDPADILAAMLAGVPTAARAAGR 416 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + + +R AI A+ QD +VVAGKGHE+ G D + Sbjct: 417 VLVEPDRAAAIAAAVAAAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVV 465 >gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus bovis ATCC 700338] gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus bovis ATCC 700338] Length = 483 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 120/500 (24%), Positives = 207/500 (41%), Gaps = 35/500 (7%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ +F E+I +++S DSR +F A G ++ Q Sbjct: 9 DILKNDHNFREIIFHNHYSLDWKENPSFSQISFDSREADKSTLFFA-KGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S + T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G+F N+ DH H T + YF K L Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + + +++V H+ + + V Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F NA+ A C+ +G A + + + + VPGR E + + G + Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 ++VDYAH +SLE +L + G + ++ G G++ + +R ++ + I+T Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474 D+P EDP+ I EI + ++ +R +AI A+ N + D +++AGKG + I Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V + D +I + L Sbjct: 464 VNGERTAYAGDLNIAKSYLN 483 >gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus uberis 0140J] gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus uberis 0140J] Length = 482 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 215/498 (43%), Gaps = 32/498 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +L+ K +F E+I+Q + + ++S DSR + A +F A G + ++ + Sbjct: 9 ELLKKDHNFREVIHQEHYY-FNYSGLSFQKLSYDSREVDADTLFFA-KGAQFK-VDYLKK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG +A V Y L + P ++V + +K +S+ A YG E + LA Sbjct: 66 AIDQGLQAYVSEIDYQL---------SIPAIIVSDIKKAMSIIAMTFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I +++ + T+ ++LTTP + L K ++ S Sbjct: 117 TGTKGKTTAAYFAYHILKQNYKPAMFSTMNTTLDGQTFFKSQLTTPESLDLFKMMASCVS 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NGMTHIIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A++ ++ V A+ Q SV G+ Sbjct: 234 ENSRAVVINSGMDHFNILAEQVADKDHVFYGDQSE--------NALTESQAFAFSVNGQI 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +AAGL S L + VPGR E V + G +++ Sbjct: 286 AGHYDIQLIGRFNQENAIAAGLACQKLGASHLDIHEGIAQTTVPGRMEVVSHPN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SLE ++ + T G I ++ G G++ + +R G++ + ++ I+T D Sbjct: 345 VDYAHNGDSLEKLVSVVETHQKGLISLIIGSTGNKGESRRADFGRVINNHPNLNVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476 +P EDPE I EI + + +R +AI ++ + D L++AGKG + IV Sbjct: 405 DPNFEDPETICQEIASHVNRHVSIIVDRQDAIIEGLKYCHTSGDALIIAGKGADAYQIVN 464 Query: 477 NGEKKMSVDCDIIREILG 494 +++ + D I ++ L Sbjct: 465 GKKEEYAGDLAIAKKALS 482 >gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis NCTC 12261] gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis NCTC 12261] Length = 481 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + DSR + +F + G F+ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNYSHVIFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI+QG V Y + P ++V + +K +SL A YG + + LA Sbjct: 66 AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S A+I D V+K ++ A ++ + Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQSDN--QIENSKAFSFSATGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + IV Sbjct: 405 DPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKEAYPGDAAVAENYL 481 >gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3] gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3] Length = 480 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 108/482 (22%), Positives = 193/482 (40%), Gaps = 27/482 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F G +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141 ++V + +K +++ + Y + + TGT GK++ A F + I + Sbjct: 65 ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + ++ + LTTP + L + ++ + G+TH +E SS +R+ Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317 + G Q + I G + Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A + + S + VPGR E + TN+ G +YVDYAH +SL+ +L +R Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355 Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI EI I Sbjct: 356 EEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415 Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R EAI A+ + D +V+AGKG + V ++ + D + Sbjct: 416 TKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475 Query: 493 LG 494 + Sbjct: 476 IN 477 >gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis R712] gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis S613] gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 512] gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 516] gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis R712] gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis S613] gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 512] gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 516] Length = 513 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R+I +S DSR + A +F G +++ A Sbjct: 19 KEDLLKEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 77 VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 306 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R G +IV+ G GD+ +R G++ +LAD+A Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 426 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510 >gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96] gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96] Length = 508 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + K+F +R+I +S DSR + A +F G +++ A Sbjct: 14 KEDLLKEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121 + G E V Y + ++V + +K +++ + Y + + T Sbjct: 72 VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123 Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 GT GK++ A F + I + + ++ + LTTP + L + ++ Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+TH +E SS +R+ + G F N+ DHI + F+ +L+ Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297 ++ + Y + + A + G Q I Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301 Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G ++A + + S + VPGR E + TN+ Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360 Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G +YVDYAH +SL+ +L +R G +IV+ G GD+ +R G++ +LAD+A Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVA 420 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469 ++T D+P SEDP KI EI I +R EAI A+ + D +V+AGKG Sbjct: 421 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 + V ++ + D + + Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505 >gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2] gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2] Length = 480 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 108/482 (22%), Positives = 192/482 (39%), Gaps = 27/482 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F G +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141 ++V + +K +++ + Y + + TGT GK++ A F + I + Sbjct: 65 ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + ++ + LTTP + L + ++ + G+TH +E SS +R+ Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317 + G Q I G + Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A + + S + VPGR E + TN+ G +YVDYAH +SL+ +L +R Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355 Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI EI I Sbjct: 356 EEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415 Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R EAI A+ + D +V+AGKG + V ++ + D + Sbjct: 416 TKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475 Query: 493 LG 494 + Sbjct: 476 IN 477 >gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc kimchii IMSNU 11154] gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc kimchii IMSNU 11154] Length = 491 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 121/511 (23%), Positives = 215/511 (42%), Gaps = 41/511 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL + +L+N + + + + + D+R ++A +FV + G F Sbjct: 1 MKLS---SETIQQLLNDEHLLVSKPEVTQTFDFLHYDTRQVKANTLFV-VKGA------F 50 Query: 60 IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPE 115 P+ + Q G +V + + P V + +K LS+ + +G +H Sbjct: 51 RPEYLTQTDGVSGLVTE---------TRLDVSLPQWQVTDVQKALSILSMAFFGYPQHDL 101 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSS-----FQIGPTSTISSFAQDNRLTTPSPIYL 170 I A TGT GK++ A I + + T S + + LTTP L Sbjct: 102 WIGAFTGTKGKTTAAYMAYNILKNTTDKHVALFSTVDRITGNNSEDKKKSDLTTPESYEL 161 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFN 228 K + G+TH+ +E SS + R+ G++ G+F N+ DH + H T + Y Sbjct: 162 FKDMRRSVDNGMTHLVMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLA 221 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K+ LF+ A K+ H+ G G + + + AIH Sbjct: 222 HKLMLFDHSDQVIINAESDHLSEIMTH-AKQTHDLVYTYSLAGKGGAYTYTSQESAIHES 280 Query: 289 QQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + + K + LPG+F NA+ A + G ++ L+++ + PGR Sbjct: 281 RLTVLPSDLKALAGHYRLNLPGDFNESNAMAALIMSALAGASHDNMIRGLDEVFI-PGRM 339 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + + G +VDYAH S+ + GR++VV G G++ +R G++ Sbjct: 340 LSLPISGHGV-TFVDYAHNYASMHALLRFAQNQYPEGRVLVVVGSPGNKGVSRRADFGRV 398 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 +LAD+ +T D+P+ E P I EI I + NRI+AI AI ++D+ Sbjct: 399 VSELADVVYLTADDPQFESPMVIAKEIASHITSETLEVHFEMNRIQAINQAISQATEKDI 458 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++VAGKG + + ++ D ++++ Sbjct: 459 VIVAGKGEDPYQKINGVDEPYIGDYAVVKQY 489 >gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 455 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 198/444 (44%), Positives = 270/444 (60%), Gaps = 8/444 (1%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ G K DG A + A + + + PIL R+ L+L Sbjct: 2 LFAALSGTKADG------MAYAKAAEAAGAVAVLAGETANAEGLSLPILRAAEPRRALAL 55 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLT 163 A+R Y P+ I AVTGT+GK+SVA+F++QI +G + +G I ++ + T Sbjct: 56 LAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITNAGERPLSHT 115 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 TP P+ L KAL+ L+++GVTH+++EASSHGLDQHRLDG++ AG+FTN+ RDH+DYH T Sbjct: 116 TPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDGVRFSAGAFTNITRDHLDYHPTF 175 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 + YFNAKMRLF +LLP +PAII AD ++ +V+ A V++VG +G + LK V Sbjct: 176 EDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKLDVMTVGERGAALCLKGVE 235 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 +Q+++I G+ F L PL G FQV NALV+AGL + +G + V E LE L Sbjct: 236 RDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGAK 295 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR ++VG S G I+VDYAHT ++L L+ +R +GR+ VV GCGGDRD+GKRP MG Sbjct: 296 GRLDYVGETSAGAPIFVDYAHTPDALVKALEALRPYVTGRLHVVLGCGGDRDRGKRPEMG 355 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + A ADI VTDDNPRSE+P IRA I+ PG E R +AI AI L + D+L+ Sbjct: 356 RAATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAIGNLERGDLLL 415 Query: 464 VAGKGHETVHIVTNGEKKMSVDCD 487 VAGKGHET IV D + Sbjct: 416 VAGKGHETGQIVGTKVIPY-SDHE 438 >gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces coleocanis DSM 15436] gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces coleocanis DSM 15436] Length = 486 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 104/505 (20%), Positives = 188/505 (37%), Gaps = 29/505 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L + + + +VS +S+ + G +FV G K + ++ Sbjct: 1 MDLS--LNVTQVRAALATELIADTLTNQVFTQVSYNSKKVIPGALFVC-KGAKFN-VAYL 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI GA A + AY + + V + R + A+ Y Sbjct: 57 EEAIENGALAYISEVAYPVAA---------AWIQVKDIRVAIPKLANAFYTTPFAAFQLT 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKA 173 T K + + + + +++ LTTP P+ L + Sbjct: 108 GITGTKGKSTTTIFLQRILDTYLANTGKTSGIISSINTYDGIVNEESSLTTPEPLELFEH 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + V++E SS GL HR+ G+ G F N+ +DHI + + +L Sbjct: 168 FHNARQSALPFVTMEVSSQGLKYHRVGGVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKL 227 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 K + + + + + +S + + + Sbjct: 228 MLFKQVKHLVINLDSA-EIDRVLAAIPAHVTVTTISASNPAADFCATNISTDGYSIKFQV 286 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S E D + G F V NAL A + GI + E L ++ V PGR E + Sbjct: 287 SGEEIDL----GISGLFNVENALAAIAVARHYGIPFTAIKEALSEIRV-PGRMELFIGEN 341 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAH S E + ++ G + I++FGC G + +R + +++ + AD Sbjct: 342 PNLVTIVDYAHNRLSYERLFQSCEESFPGFKKIIIFGCPGHKALNRRVDLAEVSDEYADH 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T ++P +E +I A+I + +R+E+ A+ ++ + V++ GKG E Sbjct: 402 IILTMEDPNAEPVSEISADIAKNVKHTPVSIVDDRVESFAYALSLVEGKTVILFVGKGDE 461 Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495 T H + D +I+R L L Sbjct: 462 TTHKIHGKAVPYPSDVEIVRGALNL 486 >gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 518 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 37/503 (7%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L + +R+ V +S+ +Q+ +F G ++ +AI +GA A V Sbjct: 23 HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +Y + + L+V N ++ ++L ++ YG + + +TGT GK+S A F Sbjct: 81 SYQNEATA---------LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131 Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + TS ++LTTP + L + L G+TH+ +E S Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 S R+ + G F N+ DH+ ++ + L D Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + A ++ G G L I + + + Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311 Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Y + VA A +C AIG ++ + GR E + T G +YV Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370 Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415 DYAH S++ +L ++ +I VV G G++ +RP +GK A + + I+ Sbjct: 371 DYAHDYASVKRLLAFLKGQQYQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T D+P EDP+ I AEI I +R EAI TAI+ D++V+AGKG + Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V + D + R+++ Sbjct: 491 QYQKVAGVDTPYPGDIAVARQVI 513 >gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M334] gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M334] Length = 481 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 123/497 (24%), Positives = 205/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + DSR + +F + G F+ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI+QG V Y + P ++V + +K +SL A YG E + LA Sbjct: 66 AISQGLGWYVAEEDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K S A+I D V+K ++ A + ++ + Sbjct: 234 KNSRAVIINSDMDHFSVLKEQVADQDHDFYGSQSDN--QIENSKAFSFSARGKLAGDYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 +DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I +E +R EAI+ A+ + N + D +++AGKG + IV Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464 Query: 477 NGEKKMSVDCDIIREIL 493 ++ D + L Sbjct: 465 GKKEAYPGDAAVAENYL 481 >gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus LMD-9] gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus LMD-9] gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus thermophilus ND03] Length = 481 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 119/497 (23%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F ++INQ + W + +S DSR I +F A G F+ Sbjct: 9 EVLKKDHNFRDIINQ-EYYYYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G V Y + P ++V + ++ +SL A Y + + LA Sbjct: 66 AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ + F I ++S + T+ + LTTP + L + ++ S Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + F LL Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + V + + + H + Sbjct: 235 NSQAVIVNSGMNHFDFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D+ L G+F NA+ A C+ +G + + + + VPGR E + + G +++ Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + +I I++ D Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVILSTD 404 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+TA+ D LV+AGKG + IV Sbjct: 405 DPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 465 GKRTDYAGDIEVAKKYL 481 >gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase [Lactobacillus fermentum IFO 3956] Length = 518 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 114/502 (22%), Positives = 194/502 (38%), Gaps = 37/502 (7%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L + +R+ V +S+ +Q+ +F G ++ +AI +GA A V Sbjct: 23 HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +Y ++ L+V N ++ ++L ++ YG + + +TGT GK+S A F Sbjct: 81 SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131 Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + TS ++LTTP + L + L G+TH+ +E S Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 S R+ + G F N+ DH+ ++ + L D Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + A ++ G G L I + + + Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311 Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Y + VA A +C AIG ++ + GR E + T G +YV Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370 Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415 DYAH S++ +L ++ +I VV G G++ +RP +GK A + + I+ Sbjct: 371 DYAHDYASVKRLLAFLKDQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T D+P EDP+ I AEI I +R EAI TAI+ D++V+AGKG + Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V + D + R++ Sbjct: 491 QYQKVAGVDTPYPGDIAVARQV 512 >gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus LMG 18311] gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus CNRZ1066] gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus thermophilus LMG 18311] gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus thermophilus CNRZ1066] Length = 481 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 119/497 (23%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F ++INQ + W + +S DSR I +F A G F+ Sbjct: 9 EVLKKDHNFRDIINQ-EHYHYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G V Y + P ++V + ++ +SL A Y + + LA Sbjct: 66 AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ + F I ++S + T+ + LTTP + L + ++ S Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ G+ G F N+ DHI + F LL Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLK 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + V + + + H + Sbjct: 235 NSQAVIVNSGMNHFDFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D+ L G+F NA+ A C+ +G + + + + VPGR E + + G +++ Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + +I I++ D Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVILSTD 404 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I +R EAI+TA+ D LV+AGKG + IV Sbjct: 405 DPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQIVN 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D ++ ++ L Sbjct: 465 GKRTDYAGDIEVAKKYL 481 >gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20] gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20] Length = 516 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 109/506 (21%), Positives = 195/506 (38%), Gaps = 33/506 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL K +L++ ++ Q + + + D+R ++ +FV + G + Sbjct: 17 MKLT---SKTIEQLLSSHNLLVSQPVTYHEFSFLHYDTRQVEPETLFV-VKGAFR--PKY 70 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118 + A QG IV S + + P V N +K LSL + + +N+ Sbjct: 71 LENA--QGITGIVSES---------QLPVDLPQWQVTNVQKALSLLSMAFFDYPQKNLWI 119 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172 A TGT GK++ A I + + + T +S + + LTTP L K Sbjct: 120 GAFTGTKGKTTAAYMTYNILKAATDNHTALFSTVDRITGPKASDRKKSDLTTPESYELFK 179 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230 + + G+TH+ +E SS + R+ G++ G+F N+ DH + H + Y K Sbjct: 180 DMRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQVGAFLNISPDHIGPNEHPNFEDYLAHK 239 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + LF+ A K + + ++ Sbjct: 240 LMLFDHSDKVIVNAESDHLSEIMTHAKKGHDKIYTYSNAEKGGEYTFTSQSSAIHESQLT 299 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V S + + +AA + A+ + +PGR + Sbjct: 300 VQASDLSEMAGAYRLNLPGDFNESNALAALIMAALAGAKHEAMVKGLDTVFIPGRMLSLP 359 Query: 351 TNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + G +VDYAH S+ + G++IVV G G++ +R G++ +L Sbjct: 360 IPNHGV-AFVDYAHNYASMHALLKFAQSQYPDGKVIVVVGSPGNKGVSRRADFGRVVSEL 418 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD+ +T D+P+ E P+ I EI I + +RI AI A+ D+++VA Sbjct: 419 ADVVYLTADDPQFESPKTIADEIAAHINNPKLDVHFEMDRIAAINQALLAARDNDIVIVA 478 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491 GKG + V ++ D +++ Sbjct: 479 GKGEDPYQKVNGVDEPYIGDYAVVKN 504 >gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 358 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 175/361 (48%), Gaps = 11/361 (3%) Query: 140 SGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +G + + TT S + + +LS G S+E SSHGL QHR Sbjct: 1 MGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD + + Sbjct: 61 VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLT 118 Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ ++ +++ + +T + PL G F V N Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+ ++ G +L + L V GR E + ++ + VDYAHT ++LE L Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDALEKALIA 237 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I A+I+ G Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAG 297 Query: 436 IPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R +AI+ AIE + DV+++AGKGHE I+ + E D +I + Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356 Query: 493 L 493 L Sbjct: 357 L 357 >gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] Length = 516 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 113/502 (22%), Positives = 193/502 (38%), Gaps = 37/502 (7%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + L + +R+ V +S+ +Q+ +F G ++ +AI +GA A V Sbjct: 21 HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 78 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +Y ++ L+V N ++ ++L ++ YG + + +TGT GK+S A F Sbjct: 79 SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 129 Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + TS ++LTTP + L + L G+TH+ +E S Sbjct: 130 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 189 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 S R+ + G F N+ DH+ ++ + L D Sbjct: 190 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 249 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + A ++ G L I + + + Sbjct: 250 FEEVYQAAKVSTAPDKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 309 Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Y + VA A +C AIG ++ + GR E + T G +YV Sbjct: 310 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 368 Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415 DYAH S++ +L ++ +I VV G G++ +RP +GK A + + I+ Sbjct: 369 DYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 428 Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T D+P EDP+ I AEI I +R EAI TAI+ D++V+AGKG + Sbjct: 429 TTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V + D + R++ Sbjct: 489 QYQKVAGVDTPYPGDIAVARQV 510 >gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 358 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 175/361 (48%), Gaps = 11/361 (3%) Query: 140 SGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +G + + TT S + + +LS G S+E SSHGL QHR Sbjct: 1 MGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + ADD + + Sbjct: 61 VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLT 118 Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ ++ +++ + +T + PL G F V N Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+ ++ G +L + L V GR E + ++ + VDYAHT ++LE L Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKPT-VIVDYAHTPDALEKALIA 237 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I A+I+ G Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAETIIVTKDNPRTEPQSQIEADIVAG 297 Query: 436 IPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R +AI+ AIE + DV+++AGKGHE I+ + E D +I + Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356 Query: 493 L 493 L Sbjct: 357 L 357 >gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 357 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 163/358 (45%), Gaps = 15/358 (4%) Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + S + T P L + L + ++ + +E +S GL R+ G Sbjct: 1 MGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFK 60 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRA 260 FTNL +DH+DYH T Y + K LF ++ A++ ADD + K Sbjct: 61 IAVFTNLTQDHLDYHGTFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDPSVEYFKKIT 120 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 K + + +S + + L G F +YNAL A Sbjct: 121 SAEVITYGIHNRADV--QAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAIT 178 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I GI + + L L + GR E + ++ + VDYAHT ++LE +L I + Sbjct: 179 VAIVEGIPLTNICDSLSNLKSIEGRMEII-DENQDFFVIVDYAHTPDALENVLSTISEFS 237 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 238 KGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNN 297 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + +R AI AI M + D++++AGKGHET I+ + D + R+ + Sbjct: 298 NLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST-IHFDDKEKARQAI 354 >gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 495 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 137/499 (27%), Positives = 228/499 (45%), Gaps = 28/499 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ +L+ + + + P + +I +S S + G +FVAI G DG +I Sbjct: 3 MKVYELLEQSG---VTARNPLPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI +GA IV S T R N P + VDN R+ LSL S Y ++ + Sbjct: 60 GNAIERGASLIVTESDL-------TARENVPFIQVDNARERLSLLVSAFYHNPSQDKLVI 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A F+Q + +++G G + I+ +++LTTPS + + L Sbjct: 113 GITGTNGKTTTALFLQHLLKKAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQ---ASL 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V +E SS GL Q+R+ G++ FTNL DH+DY++T +AY+ AK LF + Sbjct: 170 AWSNDDVVVIETSSQGLHQYRMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLFSLM 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A+I + + + K G +VL+V + G Sbjct: 230 -KADGKAVINSYTMWGNRLAKELAANGKQVLTVDTKKGATSYVLDKTTDTAVVAFNGQGG 288 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL G + N ++A + + +G+D+ E + + GR E+ G Sbjct: 289 QIEEIEAPLSGVYNQENLILATTVMVDLGLDAGNTNEAIADFAGIAGRLEYYPLA-DGNE 347 Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +++E +L + + II +FG G RD K P M + AD+ I+T Sbjct: 348 MVVDYAHTPDAIEALLTTLNAQYPNHEIIHIFGFRGQRDTKKFPQMVSASQTGADLTILT 407 Query: 417 DDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 D+ + + + + G+ +R+EA+ A+EM LV+ GKGHE Sbjct: 408 TDDLNGVPKQVMAEKYLEYVTQYGLDSMAMALDRVEAVELALEMSPNPVFLVLTGKGHEA 467 Query: 472 VHIVTN-GEKKMSVDCDII 489 V G + D + Sbjct: 468 YSEVNKYGVQ---SDQQVA 483 >gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 514 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 111/520 (21%), Positives = 194/520 (37%), Gaps = 41/520 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 KL + + L+ + + ++ V+ +S+ + +F GN Sbjct: 3 KLAQITVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 59 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-- 116 ++ A +GA V Y P ++V N +K +SL ++ +G N Sbjct: 60 YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNNLP 111 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 +A TGT GK++ A F + I + S S + LTTP + L Sbjct: 112 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 171 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 ++ +TH+ +E SS + R+ + G F N+ DHI ++ Sbjct: 172 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLHYNVGVFLNISPDHIGRNEHPTFADYLHC 231 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + + K+ +D +A + + +G ++ + + Sbjct: 232 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 291 Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 E K V+A + A+ +E+ Sbjct: 292 DSLSENKIQLISVSDKAKRLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 351 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396 VPGR E T G IYVDYAH SL +L ++ G +IV+ G GD+ Sbjct: 352 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 410 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452 +R +GK + A++A +T D+P +EDP+ I EI I +R AI+ A Sbjct: 411 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKA 470 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + + D++VVAGKGH+ + + D I+ + Sbjct: 471 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 510 >gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila simulans] gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila simulans] Length = 423 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 158/449 (35%), Positives = 241/449 (53%), Gaps = 33/449 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L++ + +I V+ + + I+ G++FV + ++ D ++I Sbjct: 1 MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46 Query: 61 PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117 Q ++ GA+AI+ S +L R + N ++ S SR Y K P+ + Sbjct: 47 DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174 AVTGT+GK+SV F +QI Q SG ++ IG T N LTTP L Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L V H+ +E+SSHG+DQ+R+ G+KL A +FTN +DH+DYH++ Y K RLF Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ AI+ AD ++K A +V++ G +G I L + + N Q +T+ Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ + ++ FP+ G+FQ YN L A G+ + +EKL PGR E V Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ KR MGKIA AD I Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 +TDDN R EDP KIR +I+ P +E G Sbjct: 394 ITDDNSRDEDPAKIRHDILLHCPDALEIG 422 >gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri DSM 20016] gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri JCM 1112] gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM2-3] gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM4-1A] gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri DSM 20016] gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Lactobacillus reuteri JCM 1112] gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM2-3] gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM4-1A] Length = 516 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 111/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79 + VS DSR +++G +F G+ ++ A +GA A V Y Sbjct: 22 SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P ++V++ +K +SL + YG ++ + T K + Sbjct: 76 -------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHIL 128 Query: 140 SGLSSF-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + ++ + LTTP + L + G+TH+ +E SS Sbjct: 129 AQSTADHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRVAVDNGMTHLVMEVSSQ 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 ++R+ G+K G F N+ DHI ++ + + + + Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFT 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298 +A + +G I L I + + + + Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D + +PG++ NA+ A G + +E L +H+ GR E + +N+ G Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHI-RGRMEMINSNTHG 367 Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413 IYVDYAH SL+ +L + R +G++ VV G GD+ +RP GK + D Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T D+P EDP I EI I + +R AI+ AI+ D++V+AGKG Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSENDDIVVLAGKG 486 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + V + D I R+ + Sbjct: 487 EDPYQKVNGEDVPYPTDVKIARDYIN 512 >gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri 100-23] gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri 100-23] Length = 516 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 110/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79 + VS DSR +++G +F G+ ++ A +GA A V Y Sbjct: 22 SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P ++V++ +K +SL + YG ++ + T K + Sbjct: 76 -------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHIL 128 Query: 140 SGLS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + S + LTTP + L + + G+TH+ +E SS Sbjct: 129 AQSTDNHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQ 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 ++R+ G+K G F N+ DHI ++ + + + + Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFI 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298 +A + +G I L I + + + + Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D + +PG++ NA+ A G + +E L +H+ GR E + +N+ G Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVHI-RGRMEMINSNTHG 367 Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413 IYVDYAH SL+ +L + R + ++ VV G GD+ +RP GK + D Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNADKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T D+P EDP I EI I + +R AI+ AI+ D++V+AGKG Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGNDDIVVLAGKG 486 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + + + D I R+ + Sbjct: 487 EDPYQKINGEDVPYPTDVKIARDYIN 512 >gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of Datisca glomerata] gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of Datisca glomerata] Length = 571 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 142/415 (34%), Positives = 203/415 (48%), Gaps = 19/415 (4%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+LV + R L A+R+YG +L VTGT+GK++VA ++ + +G ++ IG Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + + TTP L L+ ++ +GVT ++E SSH + HR+ GI+ Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL +DH+D+H + + YF AK LF S D + + A + Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTPERTGVSVI-----DTDTPWGRQLAAAVPGAI 326 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V A D LPG F V NALVA L +A G Sbjct: 327 TCGTAADAHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVATG 386 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + + L L VPGR E V VDYAHT ++++ +L+ +R + SGR+IV Sbjct: 387 VPAPVAAAGLASLPGVPGRMERVDAGQ-PFLGLVDYAHTPDAVQTLLRTVRPLVSGRVIV 445 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PG 438 V GCGGDRD+ KRP+MG A AD+AI T DNPRSEDPE I A++ G+ Sbjct: 446 VLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTLPPSARGR 505 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + +R AIR A+ D +V+AGKGHET G D D++R L Sbjct: 506 VMVEPDRAAAIRRAVGFARPGDAVVLAGKGHETGQE-QAGVVTPFDDRDVLRAEL 559 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 + L++ + ++ DSR ++ G ++ A+ G + G F+ Q Sbjct: 20 DGLAVTGGAVAGVVVRGITHDSRAVRPGDLYAALPGARAHGAAFVRQ 66 >gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2] gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2] Length = 504 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 105/502 (20%), Positives = 184/502 (36%), Gaps = 29/502 (5%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + P + + +S DSR A +F G ++ A+ Sbjct: 19 NLLKEFIGQ--EWHYTVPQEMNDLIFTSLSYDSRQTDANTLFFC-KGAAFK-ESYLESAV 74 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 AQG + V Y ++V + R ++ A Y + + + T Sbjct: 75 AQGLQCYVSEHPYENCSAYG--------IIVTDIRAAMACIAQAFYNNPQDQLFKIGITG 126 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSS 179 K + + ++ ++ S+ Q+ LTTP + L ++ + Sbjct: 127 TKGKTSCAYFVREILAKTTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVA 186 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+TH+ +E SS R+ GI G F N+ DHI + + L Sbjct: 187 NGMTHLVMEVSSQAYKTKRVSGITYEIGIFLNISPDHIGPVEHPDFDDY---LFCKRELI 243 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S +I + E++K A L Q + + + I E Sbjct: 244 HNSKQMIINRQSDYFELLKETCAAHQVPLITYGQCDGDYQVLPAESGDPKSFRIHSEKDI 303 Query: 300 FDFLFPL---PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 ++ AA + + + + + +PGR V G Sbjct: 304 LLVNGDYQLALLGEFNHDNATAAIVAACLAGATQEEAQSVLPNVTIPGRM-IVLEKQNGA 362 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I VDYAH S + + + T+ GR+I V G G + + +RP MG+ + AD + Sbjct: 363 LIIVDYAHNYLSFKSLSELAHTLRPKGRLIFVTGSAGGKAESRRPDMGRALSEYADKVYL 422 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T D+P EDP I AEI I +R A+++A+ QD++++AGKG E Sbjct: 423 TSDDPNFEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKGAEQ 482 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 V ++ D I + +L Sbjct: 483 YLKVNGQKEPYEGDLQIAQRLL 504 >gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c] gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c] Length = 522 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 158/502 (31%), Positives = 236/502 (47%), Gaps = 20/502 (3%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L+ + + + + E ++ V+ DSR +Q G ++ A+ G+ G F Sbjct: 19 LRALLADLGS--VQRAAAADVAAPEVVLHGVTHDSRAVQPGDLYAALPGSHAHGADFAAA 76 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A A GA A++ A + + + P++ + R ++ A LYG+ +L V Sbjct: 77 AAASGAAAVLTDPAGAA---ALAGSVDLPVVTTADPRSDVAQVADWLYGQPSRSLTLLGV 133 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ A V + +G + +G T + D+ TTP L + + Sbjct: 134 TGTNGKTTSAFLVDAGLRAAGHRTGLLGTVETRIADERVDSVRTTPESSDLQALFAVMVE 193 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVT ++E SSH L QHR+DG++ FTNL +DH+DYH T + YF AK RLFE Sbjct: 194 RGVTAATMEVSSHALAQHRVDGLRFAGALFTNLSQDHLDYHPTMRDYFEAKARLFEPERT 253 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 S I ++ A V + T Sbjct: 254 AASVIGIEPG--AGTWGLELAARVPGSVTYAPDPPADWWADDLTVGARGSSFTARGPRGL 311 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 LPG F V NAL A L +A GI+ + L VPGR E + + Sbjct: 312 AVPMEVRLPGRFNVANALGALALLVAAGIEPRAAAAGIGTLAGVPGRMEPI-EAGQPYLA 370 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+AHT +++E +L ++R + GR+IVV GCGGDRD+ KRP+MG A LAD+A +T+D Sbjct: 371 LVDFAHTPDAVETVLTSVRGLVDGRVIVVLGCGGDRDRAKRPLMGAAAARLADLAFLTND 430 Query: 419 NPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPRSEDP +I A++ GI +R EAI A+ DV+VVAGKGHE Sbjct: 431 NPRSEDPAEILAQMTAGIDRVATSAAKVTVIPDRAEAIAAAVAEAGPGDVVVVAGKGHER 490 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 NG D ++ + + Sbjct: 491 GQE-QNGVVTPFDDRAVLAQAI 511 >gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM 20469] gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM 20469] Length = 517 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 99/498 (19%), Positives = 175/498 (35%), Gaps = 19/498 (3%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L +L+ + + F + ++ +V+SDSR + G +FV G + Sbjct: 1 MTLHELLALFTSKNIEYTTAHFDAVDQNAQLTDVASDSREVIPGSLFVC-KGASF-SPAY 58 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + A+ GA A + + + + + N + VD+ R ++ A+ + G + + Sbjct: 59 LTSAVKAGAVAYLCQRSLAEE--LQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTT 116 Query: 120 VTGTSGKSSVASFVQQICQRSGL-SSFQIGPTS----TISSFAQDNRLTTPSPIYLAKAL 174 + T K G + G Q TTP L + L Sbjct: 117 IGITGTKGKSTCSYMLRAILDGDEPYSKCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHL 176 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + G+ +V +E SS GL R + L F N+G DHI + + +L Sbjct: 177 KHAAEAGLPYVDMEISSQGLKYDRTVDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLK 236 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L + + + + + + S + ++ T+ Sbjct: 237 IFDLARVAVVNKNTMM-FDQVMERAQRCEKVLTFSTTDSDATVWADEITPHQGMVTFTVH 295 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P+ G F V NAL A + +GI + L + V PGR E + + Sbjct: 296 TPTWTSSAALPMSGLFNVENALAAITVADYLGIREKDAVLPLMNVKV-PGRMELLSSPDN 354 Query: 355 GGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAH S + + VV G G + +R + + A AD+ Sbjct: 355 KVTGLVDYAHNKLSYQKLFSSTAKEFPGYGRYVVMGAVGGKAYNRRQELPEEAAKWADLM 414 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGK 467 I T ++ EDP I A++ P +R +AI A+ ++ + K Sbjct: 415 IYTTEDCNMEDPAVICAQMAEATPEGAAHKIILDRYDAIYEAVSAAYDDPRPSLVYLLAK 474 Query: 468 GHETVHIVTNGEKKMSVD 485 G E +I+ D Sbjct: 475 GDEPFNIIGGKHVPWMTD 492 >gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus LMS2-1] gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus Lc 705] gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus LMS2-1] gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus Lc 705] Length = 517 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 113/499 (22%), Positives = 199/499 (39%), Gaps = 47/499 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83 + + ++ DSR + +F G+K ++ A GA V Y + Sbjct: 27 EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 L+V N K +++ ++ + ++ ++A TGT GK++ A F + I + Sbjct: 81 -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135 Query: 142 LSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + T + LTTP + L + + G+TH+ +E SS + Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +R+ G+ G F N+ DHI + F + +LL +I A+ + +V Sbjct: 196 NRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQV 253 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----------------- 299 A + K+ + + + + + Sbjct: 254 YAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNI 313 Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G+F NA A G+D++ + + K+ + PGR E G + Sbjct: 314 GGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHFQVPGHGT-V 371 Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 YVDYAH S++ +L + R+ R++VV G GD+ +RP K+ +LA A +T Sbjct: 372 YVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTT 431 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P EDP I EI I + +R EAI AI+ +DV+VVAGKG + Sbjct: 432 DDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQ 491 Query: 474 IVTNGEKKMSVDCDIIREI 492 + D +++E+ Sbjct: 492 KIRGVNTPWPTDMAVVKEV 510 >gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus HN001] gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus GG] gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus HN001] gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus GG] gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Lactobacillus rhamnosus GG] Length = 517 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 113/499 (22%), Positives = 199/499 (39%), Gaps = 47/499 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83 + + ++ DSR + +F G+K ++ A GA V Y + Sbjct: 27 EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 L+V N K +++ ++ + ++ ++A TGT GK++ A F + I + Sbjct: 81 -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135 Query: 142 LSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + T + LTTP + L + + G+TH+ +E SS + Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +R+ G+ G F N+ DHI + F + +LL +I A+ + +V Sbjct: 196 NRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQV 253 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----------------- 299 A + K+ + + + + + Sbjct: 254 YAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNI 313 Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G+F NA A G+D++ + + K+ + PGR E G + Sbjct: 314 GGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHFQVPGHGT-V 371 Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 YVDYAH S++ +L + R+ R++VV G GD+ +RP K+ +LA A +T Sbjct: 372 YVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTT 431 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 D+P EDP I EI I + +R EAI AI+ +DV+VVAGKG + Sbjct: 432 DDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQ 491 Query: 474 IVTNGEKKMSVDCDIIREI 492 + D +++E+ Sbjct: 492 KIRGVNTPWPTDMAVVKEV 510 >gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus casei ATCC 334] gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC 334] Length = 517 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80 + + ++ DSR + +F G+K ++ A GA V Y Sbjct: 24 QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + L+V N K +++ ++ + ++ ++A TGT GK++ + F + I Sbjct: 80 N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132 Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T + LTTP + L + + G+TH+ +E SS Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + F + +LL +I A+ + Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299 +V A + K+ + + + + + Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310 Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F NA A G+D++ + + K+ + PGR E G Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAH S++ +L ++ R++VV G GD+ +RP K+ + A A Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P EDP I EI I + +R +AI AI D++VVAGKG + Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKGAD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V D +++++ Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510 >gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK115] Length = 481 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 208/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I D +++K + + ++ + Sbjct: 234 DHSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTITDSQAFSFEAAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 287 GHYDIQLIGRFNQENAIAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPIAIAEEIASYISYPVEKIADREEAIKKALSLTDQEGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVAYPGDYALAEKYL 481 >gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri CF48-3A] gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri SD2112] gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri CF48-3A] gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri SD2112] Length = 516 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 109/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79 + VS DSR +++G +F G+ ++ A +GA A V Y Sbjct: 22 SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P ++V++ +K +SL + Y ++ + T K + Sbjct: 76 -------GEGLPAIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFADHIL 128 Query: 140 SGLSSF-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + ++ + LTTP + L + + G+TH+ +E SS Sbjct: 129 AQSTANHIALFSTLDRILGNKPEDEFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQ 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 ++R+ G+K G F N+ DHI ++ + + + + Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFT 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298 +A + +G I L I + + + + Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D + +PG++ NA+ A G + +E L +H+ GR E + +N+ G Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHI-RGRMEMINSNTHG 367 Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413 IYVDYAH SL+ +L + R +G++ VV G GD+ +RP GK + D Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T D+P EDP I EI I + +R AI+ AI+ D++V+AGKG Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIVVLAGKG 486 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + + + D I R+ + Sbjct: 487 EDPYQKINGEDVPYLTDVKIARDYIN 512 >gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 517 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80 + + ++ DSR + +F G+K ++ A GA V Y Sbjct: 24 QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + L+V N K +++ ++ + ++ ++A TGT GK++ + F + I Sbjct: 80 N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132 Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T + LTTP + L + + G+TH+ +E SS Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + F + +LL +I A+ + Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299 +V A + K+ + + + + + Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310 Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F NA A G+D++ + + K+ + PGR E G Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAH S++ +L ++ R++VV G GD+ +RP K+ + A A Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P EDP I EI I + +R +AI AI D++VVAGKG + Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGAD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V D +++++ Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510 >gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus casei BL23] gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Lactobacillus casei BL23] gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus casei LC2W] gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus casei BD-II] Length = 517 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 109/502 (21%), Positives = 196/502 (39%), Gaps = 47/502 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80 + + ++ DSR + +F G+K ++ A GA V Y Sbjct: 24 QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + L+V N K +++ ++ + ++ ++A TGT GK++ + F + I Sbjct: 80 N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132 Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T S + LTTP + L + + G+TH+ +E SS Sbjct: 133 EARPRHIALFSTIDTVVGPESDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + F + +LL +I A+ + Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299 +V A + K+ + + + + + Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310 Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F NA A G+D++ + + K+ + PGR E G Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAH S++ +L ++ R++VV G GD+ +RP K+ + A A Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P EDP I EI I + +R +AI AI D++VVAGKG + Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGAD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V D +++++ Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510 >gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC 29799] gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC 29799] Length = 507 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 117/501 (23%), Positives = 195/501 (38%), Gaps = 28/501 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ K+ L++ + R++ VS DS+ + G +F+ G ++ A Sbjct: 17 LLLKNG--LLSDSAPLHADLT-REVRLVSCDSQTVVPGTLFIC-KGAAFKP-QYLLDAAE 71 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA V + P ++V + R+ ++L A R + + T Sbjct: 72 KGAFVYVSERRWPECAL--------PCILVSDIRRSMALLADRAWNHPSGRLHITGITGT 123 Query: 126 KSSVASFVQQICQRSGLS--------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 K + + + + +LTTP P+ L + L Sbjct: 124 KGKTTTAYFLKSMLDEWRRSQGKRESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNA 183 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G ++++E SS L HR G++ G F N+G DHI + + + Sbjct: 184 AECGAEYLTMEVSSQALKYHRTGGVEFSVGVFLNIGEDHISPVEHPD-FEDYFASKLMIF 242 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + D + + + S + I+ ++ + + + Sbjct: 243 RQSAAACVNLDSDFAERILTAAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPR 302 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + LPG F V NAL A A+G+ + V L + V PGR E T Sbjct: 303 YTRELSMGLPGSFNVENALAAVAAAEALGVPESAVAAGLAEATV-PGRMETFNTPDGKLT 361 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH SLE +L ++R GR + V FGC G + +R MG+ A AD I+T Sbjct: 362 VIVDYAHNGMSLEALLSSVRREFPGRQLTVLFGCTGGKGLDRREGMGQAAGRWADRIILT 421 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +D+P E+ I A+I I F +R EA+ AI + V+V+AGKG E Sbjct: 422 EDDPGPEEVPDICADIGGYIAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKGAEQQ 481 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 NG + D + R L Sbjct: 482 QKRKNGPEPCVPDSLLARRAL 502 >gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] Length = 483 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 144/446 (32%), Positives = 206/446 (46%), Gaps = 23/446 (5%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+AQGA A++ S+ I+ V +S A+ YG ++ Sbjct: 45 EDALAQGAAAVLTDD-------RELAASDPRIVFVPALADEVSGLAASFYGHPGRALKVV 97 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 AVTGT GK+S F Q+ R GL + +G +D+ TTP L + L+ Sbjct: 98 AVTGTCGKTSTTFFTAQLADRVGLGAAVMGTLGMGRLGDLRDSGHTTPQHAMLQRELARY 157 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G+ V++EASS GL+ RL G+ + AG FT LGRDH+D H+T +AY AK RLF+ Sbjct: 158 VDEGLGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGRDHLDRHRTMEAYAAAKWRLFD-- 215 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-----T 292 A++ ADD + +R + + L +V +QQ Sbjct: 216 AYAPEFAVLGADDPTGEAWARRLRERCAVTVFGAEPRPELDLPRVHIEGLEQQRAGLGVR 275 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ + G FQ +N A +G+ ++ E L PGR E Sbjct: 276 LASTWGEAAVSIRALGAFQAHNLAAALATLARLGVPWPELVVACEGLSGPPGRMEPYAAP 335 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 +DYAHT SL L + R + G R+ VFGCGG RD GKR MG A AD Sbjct: 336 GTPLC-LIDYAHTPESLTFALDSARALAPGGRVWCVFGCGGGRDSGKRGEMGAAAEGSAD 394 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + +VT DNPR EDPE I A ++ G+ G R +AI A++ +DV+VVAGKG Sbjct: 395 VVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGERGQAITRALDEAAPEDVVVVAGKG 454 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HE V I + + D D + +G Sbjct: 455 HERVQIFADRRVEW-SDRDFVAAYMG 479 >gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus hilgardii ATCC 8290] gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus hilgardii ATCC 8290] Length = 514 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 51/520 (9%) Query: 1 MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L+ DL+ K ++ V+ +S+ + +F GN Sbjct: 14 MLLKEHDLLVK-----------SQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 59 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116 ++ A +GA V Y P ++V N +K +SL ++ +G Sbjct: 60 YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLP 111 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 +A TGT GK++ A F + I + S S + LTTP + L Sbjct: 112 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 171 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 ++ +TH+ +E SS + R+ ++ G F N+ DHI ++ Sbjct: 172 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLRYDVGVFLNISPDHIGRNEHPTFADYLHC 231 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + + K+ +D +A + + +G ++ + + Sbjct: 232 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 291 Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 E K V+A + A+ +E+ Sbjct: 292 DSLSENKIQLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 351 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396 VPGR E T G IYVDYAH SL +L ++ G +IV+ G GD+ Sbjct: 352 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 410 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452 +R +GK + A++A +T D+P +EDP+ I EI I +R AI+ A Sbjct: 411 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKA 470 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + + D++VVAGKGH+ + + D I+ + Sbjct: 471 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 510 >gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 436 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 107/454 (23%), Positives = 192/454 (42%), Gaps = 29/454 (6%) Query: 46 FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 F A G ++ +AIA+G V Y L + P+++V + +K +SL Sbjct: 6 FFA-KGATFK-AEYLKEAIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLI 54 Query: 106 ASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL 162 A Y + +L TGT GK++ A F I + S + T+ ++L Sbjct: 55 AMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQL 114 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP + L ++ G+TH+ +E SS R+ G+ G F N+ DHI Sbjct: 115 TTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI-- 172 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + + LL + S A++ + ++ + L Sbjct: 173 -EHPTFEDYFYHKRLLMENSRAVVINSGMDHFPFLA-------NQVANQEHAFYGALSDN 224 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 ++ + + L G F NA+ A C+ +G A + + + K V Sbjct: 225 QITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRV 283 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR E + + +++VDYAH +SLE +L + +G ++++ G G++ + +R Sbjct: 284 PGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADF 342 Query: 403 GKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQ 459 G + ++ I+T D+P EDPE I EI I I+ +R +AI+ A+ + + Sbjct: 343 GAVINQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPE 402 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D +++AGKG + IV + + D + + L Sbjct: 403 DAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 436 >gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri ATCC 11577] gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri ATCC 11577] Length = 511 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 51/520 (9%) Query: 1 MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L+ DL+ K ++ V+ +S+ + +F GN Sbjct: 11 MLLKEHDLLVK-----------SQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 56 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116 ++ A +GA V Y P ++V N +K +SL ++ +G Sbjct: 57 YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLP 108 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 +A TGT GK++ A F + I + S S + LTTP + L Sbjct: 109 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 168 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 ++ +TH+ +E SS + R+ ++ G F N+ DHI ++ Sbjct: 169 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLRYDVGVFLNISPDHIGRNEHPTFADYLHC 228 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + + K+ +D +A + + +G ++ + + Sbjct: 229 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 288 Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 E K V+A + A+ +E+ Sbjct: 289 DSLSENKIRLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 348 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396 VPGR E T G IYVDYAH SL +L ++ G +IV+ G GD+ Sbjct: 349 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 407 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452 +R +GK + A++A +T D+P +EDP+ I EI I +R AI+ A Sbjct: 408 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKA 467 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + + D++VVAGKGH+ + + D I+ + Sbjct: 468 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 507 >gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 517 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80 + + ++ DSR + +F G+K ++ A GA V Y Sbjct: 24 QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + L+V N K +++ ++ + ++ ++A TGT GK++ + F + I Sbjct: 80 N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132 Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T + LTTP + L + + G+TH+ +E SS Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + F + +LL +I A+ + Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299 +V A + K+ + + + + + Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310 Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F NA A G+D++ + + K+ + PGR E G Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAH S++ +L ++ R++VV G GD+ +RP K+ + A A Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P EDP I EI I + +R +AI AI D++VVAGKG + Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKGAD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V D +++++ Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510 >gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK405] gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK678] gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1] gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK408] Length = 481 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 113/497 (22%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F Q +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I D +++K + + I ++ Sbjct: 234 DNSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTIIDSQAFSFEVAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 287 GRYDIQLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + I+ Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIIE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + S D + + L Sbjct: 465 GEKVAYSGDYALAEKYL 481 >gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1058] gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1059] Length = 481 Score = 217 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F Q +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I D +++K + + I ++ Sbjct: 234 DNSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTIIDSQAFSFEVAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 287 GRYDIQLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + I+ Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIIE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDNALAEKYL 481 >gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str. Zhang] gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str. Zhang] Length = 517 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 108/502 (21%), Positives = 194/502 (38%), Gaps = 47/502 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80 + + ++ DSR + +F G+K ++ A GA V Y Sbjct: 24 QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + L+V N K +++ ++ + ++ ++A TGT GK++ + F + I Sbjct: 80 N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132 Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T + LTTP + L + + G+TH+ +E SS Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + F + +LL +I A+ + Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299 +V A + K+ + + + + + Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310 Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F NA A G+D++ + + K+ + PGR E G Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +YVDYAH S++ +L ++ R++VV G GD+ +RP K+ + A A Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P EDP I EI I + +R AI AI D++VVAGKG + Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKGAD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREI 492 V D +++++ Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510 >gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis EAS054] Length = 379 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 166/369 (44%), Gaps = 12/369 (3%) Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 S+ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 1 NSTTTYLVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDT 60 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 61 VVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRART 120 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303 + D + M V + + QQ T + Sbjct: 121 AVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIG 180 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 LPG + V N LVA + +G+ + L ++ V PGR E + G VDYA Sbjct: 181 IRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYA 238 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR E Sbjct: 239 HKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDE 297 Query: 424 DPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 298 DPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGG 356 Query: 478 GEKKMSVDC 486 G + D Sbjct: 357 GRVRPFDDR 365 >gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] Length = 510 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 132/505 (26%), Positives = 212/505 (41%), Gaps = 28/505 (5%) Query: 9 KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L++ +S++ + I+ + DSR + G +FVAI G DGH FIPQAI Sbjct: 3 KTLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAI--- 59 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK- 126 A + + + + + P++VV ++R L+ A+ Y + + + T K Sbjct: 60 -AAGAAAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKG 118 Query: 127 -----SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 A + + G+ S T D R +TP + L + G Sbjct: 119 KSTTTDLTAQLLAAAGRTVGMISTVDFQIGTRRW-PNDTRQSTPEAPEVQALLREMVVAG 177 Query: 182 VTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF--NAKMRLFEEL 237 +EA+SH L RL G N+G +H+D+H T + Y A++ Sbjct: 178 CDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAE 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + AI+ ADD + + + R+ + + + V + + I Sbjct: 238 RHGPTWAIVNADDPHHGTFLAAVPSQTMRLRYALHAPADVQGQIVHSGPASSHMRIHSPW 297 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PLPG F N L A + + G+ + + GR + Sbjct: 298 GEIEVNVPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRGRM-VSINVGQPFT 356 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAH +S E I +R +GRII VFG G+RD KR I G+IA + D+ ++TD Sbjct: 357 VIVDYAHNPDSFEQIFTMLRPQVTGRIIAVFGSAGERDVSKRAIQGEIAGRMCDLLVLTD 416 Query: 418 DNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++PR ED E I RA G G++ NR +AIRTAI D++++ GKG Sbjct: 417 EDPRGEDREAIIAQIAAGAERAGKRPG-SGYLCIPNRAQAIRTAIAAARPGDMVLLLGKG 475 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 HE I + + R L Sbjct: 476 HEGSIIYADYTLPW-DEEGEARRAL 499 >gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] Length = 493 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 124/508 (24%), Positives = 200/508 (39%), Gaps = 34/508 (6%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L+ L+ + Q I +S S+ A +F A G + DG L+ Sbjct: 1 MKTLRTLLEAIGID-------STPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 I +AI GA I+ S + A ++ + V +L S L + I Sbjct: 54 IQEAIEHGAVCIISDQNLSNLNLPAKVQWH----QVHKPHTAFALMCSALNDNSQDKLGI 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174 + V+GT GKS+ ++ QI + +G+ + + S R +TP P L L Sbjct: 110 IGVSGTDGKSTTCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFL 169 Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 V V +E +SH L RL GI A T + +H+++H + + Y AK+ Sbjct: 170 RRCVENKVQKVILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVN 229 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L L + + +L + Q Sbjct: 230 LVRSLKDGGLFVTSTDNAKLEAFTAELRSTTKALILGKDVM--------LRIEFMGYQGV 281 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L L +GID +L ++ L V GR + + N Sbjct: 282 VVDILDQRIQTSLLLPSLATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQI-EN 340 Query: 353 SRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + G R +D+AHT+++ + + RT G II VFGC G+RD KR MGKIA Sbjct: 341 TLGVRTIIDFAHTADAYDGIFFFAKRTCEGGDIIAVFGCAGERDTSKRSPMGKIANKYCS 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 I+T+++PR E ++I +++ + E +R EAIR A+ + D L+ GK Sbjct: 401 TIILTEEDPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGK 460 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495 GHE +G+ + + + L L Sbjct: 461 GHEKTIERMDGKISW-DEVEEVEMALRL 487 >gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK160] Length = 481 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ K +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKKDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + F L+ Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + + V ++ + G + + Sbjct: 235 HSRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSQAFSFEAAGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + + + VPGR E + + G +I+ Sbjct: 287 GHYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDYTLAEKYL 481 >gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK150] Length = 481 Score = 216 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSRQADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + F L+ Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + + V ++ + G + + Sbjct: 235 NSRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSRAFSFEATGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 287 GHYDIQLIGHFNQENAVAAGLACLRLGASLKDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G++ ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVAYPGDYALAEKYL 481 >gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK330] Length = 481 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 113/497 (22%), Positives = 205/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHHPALLSTMNTTLDGETFFKSTLTTPESLDLITMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I +++K + ++ + Sbjct: 234 DNSRAVIVNSGMDHFQIVKEQVACL-------EHDFYGAGSSNTITDSQAFSFEATGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +I+ Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLKDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G++ ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVAYLGDYALAEKYL 481 >gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum ATCC 49989] gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum ATCC 49989] Length = 505 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 108/509 (21%), Positives = 187/509 (36%), Gaps = 36/509 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I +L + + ++ ++ DS+ + G +FV G ++ +AI + Sbjct: 3 IRSYIDDLKEENLLVNFDDVSFDVSNIAYDSKKVSNGTLFVC-KGAAFK-KQYLEEAIEK 60 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA V Y + N P + V + RK +++ A R Y + + T K Sbjct: 61 GACCYVSEDCYDV---------NIPQIRVGDIRKAMAVIAGRFYDHPDRKLTLIGITGTK 111 Query: 127 SSVASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 + + G + +++ LTTP L + LS + Sbjct: 112 GKTTTAYYIKAILDTFLLNSGKKPAGILSGIFNYYGKDYEESSLTTPETFELFEKLSNAA 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS L HR G+ + NL DHI + + + K Sbjct: 172 ENGLEYLVMEVSSQALKYHRTYGLMFDFAGYLNLDEDHISPGEHSD-FEDYKASKLLLFK 230 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + + Y + + S + A + + I Sbjct: 231 ACDVAVLNKDSEHYEDFLNECVDAKKVISFSSKGLDADYRACDINAKNGVLEFNIVYHDA 290 Query: 299 DFDFLFPL---------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 D P+ GEF + NAL+A + + + + E L + V PGR E V Sbjct: 291 SRDTDEPVRKSNFTILSSGEFNIDNALLATSIGSELNVPYEDMKEALYNVKV-PGRMEVV 349 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + G VD+AH S + + ++ +I +VFG G + +R +MG IA Sbjct: 350 K-SRGGRIAIVDFAHNKLSFIKLFEAVKKEYPDKKIAIVFGTPGGKAYDRRALMGMIAAK 408 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 AD +T+D+P E E I EI + NR +AI+ A E + + ++++ Sbjct: 409 NADKVYITEDDPYREKAEDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILI 468 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKG E G M D I + Sbjct: 469 AGKGIENSIKRKEGWVPMEPDNKCIERVF 497 >gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 343 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 155/339 (45%), Positives = 199/339 (58%), Gaps = 4/339 (1%) Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 + LTTP P L +AL+ L+ +TH ++EASSHGLDQ RLDG+KL A FTNL RD Sbjct: 6 WPSRPSLTTPDPADLHEALAELAENSITHAAMEASSHGLDQFRLDGVKLQAAGFTNLTRD 65 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+DYH QAY AK+RLF +LLP++ A+I AD + RVL G G Sbjct: 66 HLDYHGDMQAYLAAKLRLFTDLLPEDGVAVINADCPVAA--QVAQAAGSRRVLRFGRAGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + LK + + Q + + V G PL G FQ NAL A GL I G ++ + Sbjct: 124 ELALKDIRPDSHGQVLDLDVLGHSATIRLPLAGTFQAANALAALGLVIGCGGNALAAINA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 LE L +PGR + V I+VDYAHT ++LE +L + +GR++VVFGCGGDRD Sbjct: 184 LESLTEIPGRLQKVADKDS-APIFVDYAHTPDALETVLTALLPHATGRLLVVFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 GKRP MG+IA LADI +VTDDNPRSEDP IRA I+ G +E +R AIR A+ + Sbjct: 243 PGKRPQMGEIAARLADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSL 302 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 L + DVLVVAGKGHE+ IV D + R+ G Sbjct: 303 LRQGDVLVVAGKGHESGQIVGA-HTLPFDDAEECRQAAG 340 >gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella cibaria KACC 11862] Length = 508 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 115/514 (22%), Positives = 210/514 (40%), Gaps = 41/514 (7%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L + E++ + + ++ ++ +S + + I G + ++ AI Sbjct: 3 LTAQQITEILADQDLLISTPEFKGELKHLAYNSNDVAPETLLF-IKG-RFK-AEYLTDAI 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122 A+G +AIV S T ++ P VVD+ +S+ + Y + + +TG Sbjct: 60 AKGVKAIVA-------PTSFTHDTDLPTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITG 112 Query: 123 TSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 T GK+S ++ + + LSS T F LTTP + L + ++ Sbjct: 113 TKGKTSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDLFRWMAEA 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G++ G F N+ DH+ + + F + L Sbjct: 173 VANGMTHMVMEVSSQAYKMERVYGLRFNVGVFLNISPDHVG--ENEHPTFEDYLEHKMML 230 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 I+ AD + E+++ A A R Y + K ++ + + Sbjct: 231 FDHSEQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDTVEADLQGST 290 Query: 298 KDFD--------------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + +PG+F NA+ A +G D+ + ++ +P Sbjct: 291 FAVREAGQQAARLGIAGDYHLDMPGDFNQGNAVAAMIATRLVGADTDA-MHEGLEVVKIP 349 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIM 402 GR + + T + G IYVDYAH S+ +L +R T ++ +V G G++ +RP + Sbjct: 350 GRMQVLTTQNHGT-IYVDYAHNYASIAALLNFVRTNETVEKLTIVVGAPGNKGVSRRPGI 408 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNK 458 G+ + AD+ +T D+P+ EDP I EI I NR AI AI+ Sbjct: 409 GQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINREMDRTIAITEAIKAAGP 468 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 DV+V+A KG + + + D + + + Sbjct: 469 NDVVVLAAKGLDEYQKIGGVDTPYENDWAVAQRV 502 >gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus antri DSM 16041] gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus antri DSM 16041] Length = 516 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 110/507 (21%), Positives = 186/507 (36%), Gaps = 49/507 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSLQ 80 + + V+ DSR + AG +F G+ ++ A QGA A V Y Sbjct: 23 KLTDFTATSVAYDSRKVTAGTLFFC------KGNFLPKYLTMAREQGAVAYVAEQEYPE- 75 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + P ++V + ++ ++L + YG P++ L + +G + Sbjct: 76 ------GGDLPAIIVKDEQEAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHIL 128 Query: 141 GLSSFQI--------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G ++ Q + + LTTP + L + G+TH+ +E SS Sbjct: 129 GRATDQHVALFSTLDRVLGNRPADRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQ 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +HR G+ G F N+ DHI ++ + + Sbjct: 189 AYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSGICLINAETAHLT 248 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +A + G + L AI + + + + L + Q Sbjct: 249 DVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEFELAACSPKAQQ 308 Query: 313 --------------YNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356 YN A I+ + A + + L V GR E T G Sbjct: 309 LGIQGRYKTSVPGDYNEGNAVAAVISTALAGATAADAVATLDHVHIKGRMEMQKTRQHGT 368 Query: 357 RIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414 IY+DYAH SL+ +L + R +G++ VV G GD+ +R GK + + D I Sbjct: 369 -IYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQII 427 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T D+P EDP KI EI I +R AI+ AI+ + D++V+AGKG Sbjct: 428 LTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMDRPTAIKAAIDSSSNGDIVVLAGKGE 487 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 + + + + D I + + I Sbjct: 488 DPYQKINGVDTPYATDSKIAADYIDEI 514 >gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 483 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 119/500 (23%), Positives = 207/500 (41%), Gaps = 35/500 (7%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ +F E+I +++S DSR +F G ++ Q Sbjct: 9 DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADNSTLFF-TKGATFK-KEYLEQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI G V Y L + P ++V + +K +SL A YG I+A Sbjct: 67 AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F I ++S ++ T+ ++LTTP + L K ++ Sbjct: 118 TGTKGKTTAAYFAYNILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQ 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G+F N+ DH H T + YF K L Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A + + +++V H+ + + V Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F NA+ A C+ +G A + + + + VPGR E + + G + Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416 ++VDYAH +SLE +L + G + ++ G G++ + +R ++ + I+T Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474 D+P EDP+ I EI + ++ +R +AI A+ N + D +++AGKG + I Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463 Query: 475 VTNGEKKMSVDCDIIREILG 494 V + D +I + L Sbjct: 464 VNGERTAYAGDLNIAKNYLN 483 >gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC20] gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC20] Length = 506 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 100/499 (20%), Positives = 190/499 (38%), Gaps = 23/499 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F G ++ Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI QG + + + Y ++V + R+ +++ A YG E ++ + Sbjct: 74 AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125 Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T K + +G S + LTTP + L K ++ Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ GI G+F N+ DHI + ++ + EL Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + I+ + + + ++ G +++ + S Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGTDLKGFALSAASDVL 303 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + AA L + S + + ++PGR V G Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH S + + + R + GR++ V G G + Q +R MG+ + AD +T Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+P E+ + I EI I I + +R +A+++AI + +D++++AGKG E Sbjct: 423 SDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIAEADSKDIVIIAGKGAEQY 482 Query: 473 HIVTNGEKKMSVDCDIIRE 491 V + D + ++ Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501 >gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium HF0010_08B07] Length = 464 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 219/468 (46%), Gaps = 25/468 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V ++S++++ +F+++ G G ++ A A+ I++ S+ ++ Sbjct: 13 NVVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDSSETIDLPK-------- 60 Query: 92 ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ + + + + + L +TGT+GK+S SF+ QI + + + G Sbjct: 61 VIKIKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKHASSGT 120 Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + +N LTT P+++ +S + ++ EASS G+D++RL G+K+ Sbjct: 121 LGTFINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKIDHA 180 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN+ RDH+DYH + + Y +AK +L ++ A+ + D+ S+ + K + Sbjct: 181 IFTNISRDHLDYHGSLKKYIDAKFKLISNS-KAKTVAVNFDDEIISRHLRKMYSKETFTI 239 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S + + F + +F +YN ++ + Sbjct: 240 SSKNIESDIFFRVLKFYEDGNIEFLAETPWGKFQAASKIESKFNLYNLFLSLPYFQYVNN 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D +E L + GR + IY+DYAH+ +LE + K + ++I+V Sbjct: 300 DCEDFFAQVENLSLPYGRL----NKTEKENIYIDYAHSPKALESVCKYLYKKKKNKLIIV 355 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444 FG GG+RD+GKR MG+IA + VT DNPR+EDP +I II GI + + Sbjct: 356 FGAGGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGTDKICIELD 415 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 R AI+ AI L ++D+L++AGKGHE IV + E D + +++ Sbjct: 416 RSCAIKNAINELGEEDILLIAGKGHEKKQIVGD-EYLDFSDFEEVKKC 462 >gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus pentosaceus ATCC 25745] gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus ATCC 25745] Length = 507 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 109/515 (21%), Positives = 193/515 (37%), Gaps = 41/515 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGH---LF 59 DL ++ + + + + +S DSR ++ G++F G+ + Sbjct: 2 DLEIATVKAILTEHDLLKEIKSTKTVANTGISYDSRTVKPGYMFFC------KGNFKPEY 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117 + A GA V + Y + ++V N + +++ ++ Y + I Sbjct: 56 LSVARQNGATTYVSENEYPE-------GTGMTAIIVTNVTRAMAVLSATYYNFPQNDLFI 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 + +TGT GK+S A F I + + S + LTTP + L Sbjct: 109 IGITGTKGKTSSAYFAHSILNQKYPNQVALFSTIDRIVGPKPEDQFKSDLTTPESMNLFH 168 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230 + G+ ++ +E SS + R+ G+K G F N+ DH + H+ + Y + K Sbjct: 169 DMRVAVDNGMKYLVMEVSSQAYLRDRVYGLKFDCGIFLNITPDHIGRNEHKDFEDYLHCK 228 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 ++L A D + S + + + Sbjct: 229 LQLMVNSKRCIIDADTDRFDDVFGAAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTS 288 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--------VV 342 ++ N A A L + V+ Sbjct: 289 NRFTLVESSSKAEAFHVAGDYDLNVAGDYNQSNATAAIIAAALADVTYQDAVLPLKSIVI 348 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401 PGR E + G ++VDYAH SL +LK ++ G++IVV G GD+ +R Sbjct: 349 PGRMEHLNVPGHGV-VFVDYAHNYASLHALLKFLKHQYHDGKVIVVVGSPGDKGISRRAG 407 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457 G+ + ADIA +T D+P EDPE+I +I+ I + +R +AI AI + Sbjct: 408 FGQALSEQADIAYLTTDDPAFEDPEQIIQQIMDNIKPGTVEVRQVLDRHDAIEQAIMNSS 467 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++DV+V+AGKG + V + D + E+ Sbjct: 468 EKDVVVLAGKGEDPYQKVGGVDTPWPTDMGVAEEV 502 >gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 490 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 108/506 (21%), Positives = 197/506 (38%), Gaps = 39/506 (7%) Query: 1 MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L + L+ ++ + + + D+R +Q +FV I G + + Sbjct: 1 MRLT---TETIQNLLVYHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAY 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118 + G ++ + + P V N +K LSL + + E + Sbjct: 55 LDNV--HGITGLITEKKIDV---------DLPQWQVTNVQKALSLLSMAFFDYPQEQLWI 103 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172 A TGT GK++ A F + + + + T +S + + LTTP L K Sbjct: 104 GAFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFK 163 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230 + + G+TH+ +E SS ++R+ G++ G+F N+ DH + H T + Y K Sbjct: 164 DMRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHK 223 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + L + A D K Y + ++ ++ Sbjct: 224 LMLLDHSDEVIVNAETDHFDTIYTYAKK------THHKVYTYSRQMFTSEESAIHESRFT 277 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V S + + +AA + ++ + +PGR + Sbjct: 278 VVKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLP 337 Query: 351 TNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 N G +VDYAH S++ + +GR++VV G G++ +R G + DL Sbjct: 338 INGHGV-AFVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDL 396 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD+ +T D+P+ E+P I EI I + NRI AI AI N+ D+++VA Sbjct: 397 ADVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVA 456 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491 GKG + + + D ++++ Sbjct: 457 GKGEDPYQKIDGVDVPYIGDYAVVKQ 482 >gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus italicus DSM 15952] gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus italicus DSM 15952] Length = 514 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 99/516 (19%), Positives = 196/516 (37%), Gaps = 38/516 (7%) Query: 2 KLQDL---------IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52 KL+D+ + + + +++ + + +S DSR +F G Sbjct: 14 KLKDIYAVLLREKMLKEVIIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLFFC-KGQ 72 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 + +F+ QA+ G + V Y D L+V + R+ +++ A Y Sbjct: 73 QFK-EVFLEQAVTGGVKVYVSEQPYDSIDAVG--------LIVTDIREAMAMIAQFFYDH 123 Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSP 167 + + T K + ++ + S+ + LTTP Sbjct: 124 PENKLTKIGITGTKGKTSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPEA 183 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L K ++ G+TH+ +E SS R+ G+ G F N+ DHI + Sbjct: 184 LDLYKQMAKAVENGLTHLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFDD 243 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + L + S +I D+ E++ + + ++ A Sbjct: 244 Y---LYCKRQLIQHSKQMILNADSDYFELLAETCTLYHVPYVTFGRSLTVDVEIQDATDT 300 Query: 288 KQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + T+S + + + G F NA A + +G + V+P Sbjct: 301 RSFDLIAHTLSFSDLEGGYRLAILGTFNHDNATAALLVSHLLGFS-EKISRQAIANTVIP 359 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM 402 GR + ++ I +D+AH S++ + + + +G++I++ G G + +R + Sbjct: 360 GRMHVIDEPNQPL-ILIDFAHNYLSIKAVGELGHHLRPNGKVIILTGSTGGKALSRRADI 418 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK 458 K ++AD AI+T D+P EDP I EII I + R +AI A+ Sbjct: 419 AKALSEIADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAIAIALSHATT 478 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +D++ + GKG E + + D ++++++L Sbjct: 479 EDIVAICGKGTEKEMKINGLGEPYPGDYEVVQQLLN 514 >gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 514 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 106/511 (20%), Positives = 198/511 (38%), Gaps = 30/511 (5%) Query: 1 MK---LQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 MK L++ Y D ++ L+ M R+ I ++ DSR + G +F+ G Sbjct: 1 MKNYTLKE--YADLLSSVDMLAEAEMMGRDETVITYLTYDSRAVTPGTLFIC-KGAAFK- 56 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 ++ AI GA A V Y + + P L+V + RK + A + K + Sbjct: 57 EQYLENAIRAGAVAYVSEVQYETE-------TKVPCLIVKDIRKAMPPLAEMYFNKAWQE 109 Query: 116 -NILAVTGTSGKSSVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 ++ GT GKS+ A ++ S+ Q++ +TTP + Sbjct: 110 LTVIGFGGTKGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESV 169 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L + + + G+T++ +E SS L R++ ++ + N+ DHI + + Sbjct: 170 ELHEHMRHAVDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDY 229 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 ++ L K++ + A D + + + S+ + + + Sbjct: 230 ISSKMKMFALAKQAVVNLDA-DFVERALKAAEDAGSFKTFSLKDPSADFYGYNIHKEDGE 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ + D F +PG F V NA+ + I + L + GR E Sbjct: 289 IIFSVKCDKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRARSS-GRMEL 347 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + + VDYAH S E + + R I+ +FGC G + +R +G IA Sbjct: 348 YTSADKRVTAVVDYAHNKLSFEKLFGSTREEYPDHDIVAIFGCPGYKAYIRRKDLGLIAG 407 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463 + + + ++P E ++I +I + + +R AI AI + VL+ Sbjct: 408 EYSKKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIEDRGVAIHKAIMECKRPTVLL 467 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + GKG+ET D + ++E L Sbjct: 468 ITGKGNETRQKYGTIYADCRTDVEYVKEYLE 498 >gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 490 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 109/505 (21%), Positives = 198/505 (39%), Gaps = 37/505 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L++ + + + + D+R +Q +FV I G + ++ Sbjct: 1 MRLT--TETIQNLLVDHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 G ++ + + + P V N +K LSL + + E + Sbjct: 56 DNV--HGITGLITETKIDV---------DLPQWQVTNVQKALSLLSMAFFDYPQEQLWIG 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAKA 173 A TGT GK++ A F + + + + T +S + + LTTP L K Sbjct: 105 AFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKD 164 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKM 231 + + G+TH+ +E SS ++R+ G++ G+F N+ DH + H T + Y K+ Sbjct: 165 MRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKL 224 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L + A D K H Y + ++ ++ V Sbjct: 225 MLLDHSDEVIVNAETDHFDTIYTYAKKAHHKV------YTYSRQMFTSEESAIHESRFTV 278 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 S + + +AA + ++ + +PGR + Sbjct: 279 VKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLPI 338 Query: 352 NSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 N G +VDYAH S++ + +GR++VV G G++ +R G + DLA Sbjct: 339 NGHGV-AFVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLA 397 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D+ +T D+P+ E+P I EI I + NRI AI AI N+ D+++VAG Sbjct: 398 DVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAG 457 Query: 467 KGHETVHIVTNGEKKMSVDCDIIRE 491 KG + + + D ++++ Sbjct: 458 KGEDPYQKIDGVDVPYIGDYAVVKQ 482 >gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus oris PB013-T2-3] gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus oris PB013-T2-3] Length = 516 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 108/505 (21%), Positives = 182/505 (36%), Gaps = 49/505 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79 + V+ DSR + AG +F G+ ++ A QGA A V YS Sbjct: 22 KNLTDFTATSVAYDSRKVTAGTLFFC------KGNFLPKYLTMAKGQGAVAYVAEQEYSE 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + P ++V + +K ++L + YG P++ L + +G + Sbjct: 76 -------GGDLPAIIVKDEQKAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHV 127 Query: 140 SGLSSFQI--------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 G ++ + LTTP + L + G+TH+ +E SS Sbjct: 128 LGRATDHHVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSS 187 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +HR G+ G F N+ DHI ++ + + + D Sbjct: 188 QAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSRVCLINAETADL 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE-- 309 +A + G + L + AI + + + + L + Sbjct: 248 ADVYYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEFELAACTPKAE 307 Query: 310 --------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 VAA + A+ +A + GR E T G Sbjct: 308 RLGLQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLDHVHIKGRMEMQKTRQHG 367 Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIA 413 IY+DYAH SL+ +L + R +G++ VV G GD+ +R GK + + D Sbjct: 368 T-IYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQI 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T D+P EDP KI EI I +R AI+ AI+ D++V+AGKG Sbjct: 427 ILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMDRPTAIKAAIDSSGNGDIVVLAGKG 486 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 + + + + D I + + Sbjct: 487 EDPYQKINGVDTPYATDSKIAADYI 511 >gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC30] gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC10] gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC30] gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC10] Length = 506 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 100/499 (20%), Positives = 189/499 (37%), Gaps = 23/499 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F G ++ Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI QG + + + Y ++V + R+ +++ A YG E ++ + Sbjct: 74 AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125 Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T K + +G S + LTTP + L K ++ Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ GI G+F N+ DHI + ++ + EL Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + I+ + + + ++ G +++ + S Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGADLKGFALSAASDVL 303 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + AA L + S + + ++PGR V G Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH S + + + R + GR++ V G G + Q +R MG+ + AD +T Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+P E+ I EI I I + +R +A+++AI + +D++++AGKG E Sbjct: 423 SDDPDFEEASAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIADADSKDIVIIAGKGAEQY 482 Query: 473 HIVTNGEKKMSVDCDIIRE 491 V + D + ++ Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501 >gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter hepaticus ATCC 51449] gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus ATCC 51449] Length = 463 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 110/398 (27%), Positives = 169/398 (42%), Gaps = 18/398 (4%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159 L+ + + NI+ +TGT+GK++ A+ + I G + +G + Sbjct: 74 LNDILMANFSHNSPNIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKP 133 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 LTTPS + L + L Q +E SSH ++Q R+ G+ TN+ DH+DY Sbjct: 134 KGLTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDY 193 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H++ + Y K FE K A D +A L Sbjct: 194 HKSVEEYRRIKNSFFEGEGRKLLNA-----DEPYIYCTDKAAYFYGIEKKGNLSVDVYAL 248 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEK 338 + + + + L G+ +YN L A + I + E LE Sbjct: 249 ENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIGAVKILTQEPLERIAEALEH 308 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V + VD+AHT + + I ++ R +I VVFG GGDRD+ K Sbjct: 309 FGGVSGRMEVVHN---MPLVIVDFAHTYDGMYQIFESFR---HCKIAVVFGAGGDRDKSK 362 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455 RP MG A A +T DNPR+E P+ I +I+ G+ + +R +AI A+E Sbjct: 363 RPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVEADRKKAIYMALES 422 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L +VL++ GKG E I+ N EK D +++R Sbjct: 423 LESDEVLLILGKGDEDYQIIGN-EKIYFDDREVVRNYF 459 >gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] Length = 505 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 193/457 (42%), Gaps = 20/457 (4%) Query: 39 HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98 + G +F+ + D AI +GA AI+ + P +V + Sbjct: 42 DCEPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQ---------LLPLAIPQAIVPDA 92 Query: 99 RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISS 155 R+ L + + + G + + +TG+ GK++ A V + + + + I S Sbjct: 93 REALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGYSDSI 152 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 + TP LA +S + +E SS GL Q R G L TNL Sbjct: 153 EQVSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTAGTSLDIAVLTNLRNV 212 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H H + Y AK R+F L AII ADD S+++++ V Sbjct: 213 HTSEHGSAANYLAAKKRIFSH-LKPGGLAIINADDHRSRQLLESLACPTLTVGLHAEADI 271 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + TI+ + + G+ V N L A + +++GI+ + ++ Sbjct: 272 SARVIDRSIAEQ--RFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELSTIVRG 329 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 +E + +PGR + + + VD A T ++L + LK R +T GR+++VF G+++ Sbjct: 330 IENVTYLPGRMQRLEVGQE-FGVIVDAASTPDTLAIALKTARRVTKGRVLLVFSASGEKN 388 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTA 452 + RP++ ++A AD+A++T NPR E P +I +++ G R EAIR A Sbjct: 389 RDARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIPTRAEAIRWA 448 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + D +++ G G T H+V K D ++ Sbjct: 449 LGHAQPGDCVLICGHGDRTSHLVGT-HKVRHDDREVA 484 >gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1056] Length = 481 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI ++ + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + F L+ Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + V ++ + G I + + Sbjct: 235 NSRAVIVNNGMDHFQIVKEQVASMEHDFYGAGSSNTIIDSQAFSFEAAGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +I+ Sbjct: 287 GRYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDYTLAEKYL 481 >gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC 49626] gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC 49626] Length = 519 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 106/480 (22%), Positives = 180/480 (37%), Gaps = 22/480 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR I+ G +FV G F+ A+ GA A + + +++ + + Sbjct: 34 GIDHDSRIIEPGHVFVC-KGAAFKP-EFLKSALEAGAVAYLCAESHAAELEAIAPTVPAL 91 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI--CQRSGLSSFQI 147 I +N R+ ++ ++ + G ++ +TGT GKS+ A ++ I + + Sbjct: 92 IATDENLRRAMAESSAYVTGHPDHGLTMIGITGTKGKSTTACMLRAILDGDEPYEKTAIM 151 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G TTP L + L+ G+T++++E SS L R G+ L Sbjct: 152 GSIEVFDGIEHGKPDNTTPEAPELWRHLANAQKCGLTYMAMEVSSQALKYDRTYGLHLDI 211 Query: 207 GSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA---- 260 F N+GRDHI H T + YF +KM++F+ + V Sbjct: 212 AVFLNIGRDHISPVEHSTFEDYFVSKMKIFDMAKTAVINRNTEHYEDVMAHVRAVHERNP 271 Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 S I + + + P+PG F V NAL A Sbjct: 272 ECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTWTGHLSIPMPGLFNVDNALAAI 331 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRT 378 + +G + L V GR E + T R VDYAH + + + + Sbjct: 332 TVANLLGFSGEKLQYPLLN-THVSGRMELIPTKDRKVTALVDYAHNRLAYQKLFSSSSQE 390 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + VV G G + Q +R + + AD I T ++P +DP +I AE+ P Sbjct: 391 FPNYGRYVVLGAVGGKAQERRRDLPEEGSKWADHLIYTTEDPAFDDPAEICAEMAAATPE 450 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R EAIR A+ + ++ + KG E + D + + Sbjct: 451 DASYEIILDREEAIRQAVRLAYTDARPSIVYLLAKGDEDFQSICGKRVPWKTDAAVFKAA 510 >gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] Length = 557 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 145/538 (26%), Positives = 213/538 (39%), Gaps = 65/538 (12%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L+ E S + I ++ DSR ++AG +F A+ G G+ FI Sbjct: 4 RLSQLLTGFQHETAGGSS-------DPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIA 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILV-VDNTRKFLSLFASRLYGKHPEN 116 +AIA+GA AIV A N P+LV V + R +S A Y E Sbjct: 57 KAIARGAAAIVYQDDLPEDALRAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPSEK 116 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLA 171 ++ VTGT GKSS SF+ Q+ G + I + A TTP + Sbjct: 117 LAVIGVTGTEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQ 176 Query: 172 KALSYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + L + G + VE+SSHGL +RL ++ AG F N+ +H+++H T + Y + Sbjct: 177 RQLYEMVQNGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSD 236 Query: 230 KMRLFEELLPKES-------------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 K LF L + ++ +D + + G GK Sbjct: 237 KANLFRALDAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAGKN 296 Query: 277 IHLKKVCAIHNKQQVTISV-----------------------EGKDFDFLFPLPGEFQVY 313 + + + PLPG F VY Sbjct: 297 ADIPLPEIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVY 356 Query: 314 NALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L + GI A V E +L V GR V + + VDYAHT +S E I Sbjct: 357 NVLASLITVSTITGIPFARVAEKCPQLQPVKGRM-TVIDKGQPFEVIVDYAHTPSSFETI 415 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R RIIV+FG GG+RD KRP G+IA D+ I+ D++PR+EDP + I Sbjct: 416 FPPLRKRARNRIIVLFGSGGERDTKKRPEQGRIAARWCDVVILADEDPRAEDPAALLEMI 475 Query: 433 IHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 G R +AIR A + + D++++ GK HE I + Sbjct: 476 AAGCRSAGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLGKAHENSIIYKDYTMPY 533 >gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 484 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 212/498 (42%), Gaps = 26/498 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + + QL I S++S H+Q +FV G D H +I AI Sbjct: 1 MLSETLKSFLKQLGALS-------IRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAIT 53 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTS 124 GA AI+ + S + P+ V + + L L A Y + +TGT+ Sbjct: 54 NGAVAIIATKPISA---------SVPVFVTGSYYQSLLLIKAFYQYPHKKIRHIGITGTN 104 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++VA + Q+ + S++ + Q+ TTP + L ++ VT Sbjct: 105 GKTTVAHGLNQVLKTKRQSAYIGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTD 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSH L Q R + L G TN+GRDH+DYH+T Y AK+++ + + P + Sbjct: 165 NVMELSSHALVQDRAGFVPLSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAV 224 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I D + + + S+ ++++ + ++ +G Sbjct: 225 INLDDHHANVAIERACSRVNVLTFSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERVFS 284 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LP F V N L A +A+ A + L + GR + G VDYAH Sbjct: 285 QLPFLFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRS-KYLSLDNGALALVDYAH 343 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L + + I++ ++ R+I V G GDR + +GK+ +D+ I T DNP E Sbjct: 344 NFDGLTALYQGIQSQSAKRVITVVGVTGDRIRDA-ADIGKLCATHSDVVIFTSDNPLGEM 402 Query: 425 PEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN---GE 479 E I + + + E +R EAI+ A ++ D+++V GKG ET +T G Sbjct: 403 QEDIFRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGSETHQYITTNQVGR 462 Query: 480 KKMSVDCD--IIREILGL 495 ++ D + E+L + Sbjct: 463 QRYIGDVAALTLEEVLRV 480 >gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK72] Length = 481 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLELIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I +++K + +K A + ++ Sbjct: 234 DNSRAVIVNSGMDHFQIVKEQVASLEHDFYGADSSNT--IKDSQAFSFEATGKLAGNYDI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 292 -----QLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVAYPGDYALAEKYL 481 >gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurovum sp. NBC37-1] gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Sulfurovum sp. NBC37-1] Length = 432 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 172/392 (43%), Gaps = 23/392 (5%) Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTP 165 +G ++ VTGT+GK++V + + G ++ +TTP Sbjct: 53 AFWGLDAMKVVGVTGTNGKTTVTAAIYSFLLDLDKKPALQGTRGLFAEEKRIEEKSMTTP 112 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 S + + G + +E SSH +DQ R++GI TN+ DH+DYH T + Sbjct: 113 SILETLHNMKQTMDMGCNYFIMEVSSHAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEE 172 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 Y K F + K +K+ + S G + + ++ Sbjct: 173 YRRVKSLFFADDTMKLL----------NKDDINNITYNPKNAYSYGVDEPATYKVQAFSL 222 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPG 344 + I ++ F P+ G F ++N + A G + + +E V G Sbjct: 223 LHGITAGIKYMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQEICDVVENFAGVAG 282 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V SR + VD+AHT + + +L++++ I VVFG GG+RD+ KRP+MG Sbjct: 283 RMEVV---SRDPLVIVDFAHTHDGIHAVLESMKD---RDISVVFGAGGNRDKEKRPLMGA 336 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 A A+ VT DNPR E PE I +I+ G+ +R AI+ A+E L +V Sbjct: 337 AAGRYANKIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEV 396 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L++ GKG E + G K D +++RE+L Sbjct: 397 LLILGKGDEDYQEIK-GVKHHFDDREVVRELL 427 >gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] Length = 455 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 114/441 (25%), Positives = 189/441 (42%), Gaps = 23/441 (5%) Query: 63 AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 A+ G A++V S ++ + ++ + K L + G++P I+ Sbjct: 24 ALENGVVKEEALLVRSKQNMAFIPSDFPQE-NLIESCDLGKVLLD---SIPGENP-RIVG 78 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A+ + + G +G + + LTTPS + L + LS+ Sbjct: 79 ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 138 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G + +E SSH + Q R+ G+ TN+ DH+DYH++ + Y K FEE Sbjct: 139 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 198 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K A + G G + + A + + Sbjct: 199 GLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNKECSQE 258 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + A + I + + +E V GR E V Sbjct: 259 SCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHKPL--- 315 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VD+AHT + ++ I ++ R +I VVFG GGDRD+ KRP MG A + AD +T Sbjct: 316 VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYADKLYITS 372 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPRSEDP +I +I G+P + + +R +AI A+ L + +VL++ GKG E Sbjct: 373 DNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLILGKGDED 432 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 I+ N K D +++RE Sbjct: 433 CQIIGNN-KIYFDDREVVREY 452 >gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK353] Length = 481 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I +++ + + I ++ + Sbjct: 234 DNSRAVIVNSGMNHFQIVNEQVAS-------MEHDFYGTGSNNTIIDSQAFSFEAAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +I+ Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDYALAEKYL 481 >gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolinella succinogenes DSM 1740] gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE [Wolinella succinogenes] Length = 434 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 120/474 (25%), Positives = 204/474 (43%), Gaps = 58/474 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S DSR F+ ++ + A +G + + +D +++ Sbjct: 9 EVEFISDDSRECTPKSAFLLTQSSRV----YEAAAREKGCKLFL-----EPKDLHRFLKT 59 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P++ V TGT+GK++ ++ + I G +G Sbjct: 60 DIPLIGV-------------------------TGTNGKTTTSAAIYSILLDLGYKVALLG 94 Query: 149 PTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + LTTP + L + + G +E SSH +DQ R++G+ Sbjct: 95 TRGFFMNDELIEPKGLTTPPLLELYERIDRAKRAGCDFFVMEVSSHAIDQKRIEGLNFAL 154 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+DYH++ + Y K F++ P + +A Sbjct: 155 KILTNITSDHLDYHKSLEHYIQTKNSFFDDSTP-----------KLINKDESKAKFNLQN 203 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAI 325 LS G + + K ++H + I+ K+ L G+ +YN L A + I Sbjct: 204 ALSYGIEHPSSYHVKAYSLHGGIEARIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLI 263 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G + + + E+ V GR E V + VD+AHT + + I ++ I+ Sbjct: 264 GGELQEICDMAERFGGVEGRMERVSEEPL---VVVDFAHTEDGMRQIFES---FPHQEIV 317 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442 V+FG GGDRD+ KRP MG +A A +T DNPRSEDP I EI GI +++ Sbjct: 318 VLFGAGGDRDRSKRPKMGAVADRYAKRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKE 377 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +R++AIR A++ L Q+VL++ GKG E I+ + +K D + + LG I Sbjct: 378 PDRVQAIRRAVKELEAQEVLLILGKGDEAEQIIGS-QKIPMKDRETVLSALGEI 430 >gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1087] Length = 481 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 207/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDCISYDSREADASTLFF-VKGEAFK-REFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I +++K + + ++ + Sbjct: 234 DNSRAVIVNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +++ Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L ++ G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVQEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDYTLAEKYL 481 >gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter fetus subsp. fetus 82-40] gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter fetus subsp. fetus 82-40] Length = 429 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 129/470 (27%), Positives = 202/470 (42%), Gaps = 57/470 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ +S+ ++G F + N F AI GA I T + I Sbjct: 11 ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIII-------------TPKRAKTI 53 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L +D+ ++ +TGT+GK++ A + + G G Sbjct: 54 LNLDD----------------GIRLIGITGTNGKTTTAFAIAFGLRSLGYKVGISGTRGA 97 Query: 153 ISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 Q D LTT + + G + +E SSH + Q+R++G+ FT Sbjct: 98 FICDKQIADKGLTTSQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNFALKVFT 157 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH++ F+ R+ +SP +I DD K K + Sbjct: 158 NLSQDHLDYHKS----FSEYARVKSSFFDDDSPKLINGDDESIKFNHKNTMIYWLKNSDA 213 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDS 329 + + K + I + + + L G+F +YN L A G + Sbjct: 214 SFFVENYDFKG------GIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIKFLSRVSL 267 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + K V GR E V S+ + VD+AHT + +E +L ++ ++VVFG Sbjct: 268 QEAADSVRKFESVAGRVEIV---SKNPLVIVDFAHTPDGIEKVLDA---LSHDELVVVFG 321 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446 GGDRD+ KRPIMGKI A I+IVT DNPR+EDP I +I+ G+ NR Sbjct: 322 AGGDRDKTKRPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIENRK 381 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +AI+ AIE+ +VV GKG E + +G+K D +++EIL I Sbjct: 382 DAIKKAIELA-AGKTVVVLGKGDEPYQEI-SGKKYPFSDKLVVQEILSAI 429 >gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis VMC66] gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis VMC66] Length = 481 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A+ G + + + + P+L+V++ ++ +SL YG + + LA Sbjct: 66 AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLVMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI +S + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G TH+ +E SS + R+ G+ G F N+ DHI + + LL Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S A+I +++K + + ++ + Sbjct: 234 DNSRAVIVNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLA 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +I+ Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G++ ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVAYPGDYALAEKYL 481 >gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] Length = 464 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 114/441 (25%), Positives = 189/441 (42%), Gaps = 23/441 (5%) Query: 63 AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 A+ G A++V S ++ + ++ + K L + G++P I+ Sbjct: 33 ALENGVVKEEALLVRSKQNMAFIPSDFPQE-NLIESCDLGKVLLD---SIPGENP-RIVG 87 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ A+ + + G +G + + LTTPS + L + LS+ Sbjct: 88 ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 147 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G + +E SSH + Q R+ G+ TN+ DH+DYH++ + Y K FEE Sbjct: 148 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 207 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K A + G G + + A + + Sbjct: 208 GLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNKECSQE 267 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + A + I + + +E V GR E V Sbjct: 268 SCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHKPL--- 324 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VD+AHT + ++ I ++ R +I VVFG GGDRD+ KRP MG A + AD +T Sbjct: 325 VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYADKLYITS 381 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPRSEDP +I +I G+P + + +R +AI A+ L + +VL++ GKG E Sbjct: 382 DNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLILGKGDED 441 Query: 472 VHIVTNGEKKMSVDCDIIREI 492 I+ N K D +++RE Sbjct: 442 CQIIGNN-KIYFDDREVVREY 461 >gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204] gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204] Length = 506 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 107/509 (21%), Positives = 183/509 (35%), Gaps = 33/509 (6%) Query: 1 MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK L+D I + + + VS DS+ + +F+ G Sbjct: 1 MKKYLLKDYISFLQEKNVLGDVNLSDTCMNTVVALVSCDSQQVVRNTLFLC-KGVHFK-A 58 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 ++ A+ +GA A + Y N P + + N R ++ A+ Y P Sbjct: 59 QYLQDAVNKGAFAYLSEVEYP--------EVNIPWIPLTNVRYAMANLATMYYND-PWKE 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPI 168 L V G +G ++ + ++G ++ LTTP P+ Sbjct: 110 LNVIGLTGTKGKSTTTYYVKAILDTYLERVGKNESAVISSIGTYDGVERFESHLTTPEPL 169 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L + S + V++E SS L R+ G+ +F N+G DHI + + + Sbjct: 170 DLERHFSNAVESKIDFVTMEVSSQALKYDRVLGVNFSVAAFLNIGYDHISSVEHP-TWED 228 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + D + + S + V + N Sbjct: 229 YFASKLRIFEQCTYGLVNLDSDHCDEILDAAKAAKKVITFSEANDTADFYGYDVHKVGND 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + D +F +PG F V NAL A + I + L V PGR E Sbjct: 289 IVFKVRGSDFDEEFKLSMPGLFNVSNALCAIAIARLYDIPVRDIQAGLYHAKV-PGRMEI 347 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 +N + VDYAH S + + +++R R ++FGC G + + +R +G+IA Sbjct: 348 YTSNDKKITAIVDYAHNQLSFQKLFESVRSEYPGYRATIIFGCPGKKAKDRRHDLGEIAG 407 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML---NKQD 460 AD +T+++ EDP I EI + + +R +AI A+E Sbjct: 408 KNADYIYLTEEDAGEEDPLAIAHEIARAVEKEKAPYEIIIDREKAIARAVEDAANVQGNT 467 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDII 489 V+++ GKG ET + D + Sbjct: 468 VILITGKGAETRQKRGTEYIPVMSDVACV 496 >gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] Length = 516 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 131/506 (25%), Positives = 219/506 (43%), Gaps = 37/506 (7%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 + + P+ ++ D+R ++ G +F+A+ G G F P AI++GA+A Sbjct: 25 IADAVGGTRHGPVG----QVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKA 80 Query: 71 IVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 ++ +A + + + P A+ L + VTGT+GK Sbjct: 81 VLTDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHL------RLWGVTGTNGK 134 Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ + R G + +G I + + +TTP + + + + + Sbjct: 135 TTTTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDL 194 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L R+D ++ F NL DH+D+H + + YF K LF E I Sbjct: 195 VLEVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII 254 Query: 246 IYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 DD + + + ++ G + G+ + + +GK Sbjct: 255 --VDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTAS 312 Query: 302 FLFPLPGEFQVYNALVAAGLC--------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +PG F N +A + + D L VPGR E + Sbjct: 313 VQVLMPGRFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQ- 371 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R+ VD+AH +L+ +L+ +R T+GR+ +VFG G RD KRPI+G+IA +LAD Sbjct: 372 --PRVIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFT 429 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +TDD+P EDP+KIRAE+ G+ ++E R AI+ AI+ QD +V+AG+GH Sbjct: 430 YLTDDDPHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAGRGH 489 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495 ET+ G + D R L L Sbjct: 490 ETLQETPVGAIDL-DDRVEARAALQL 514 >gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK49] Length = 481 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ + +F +++ F + + +S DSR A +F + G F+ + Sbjct: 9 NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A++ G + + + + P+L+V++ ++ +SL A YG + + LA Sbjct: 66 AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ A F QI ++ + T+ + LTTP + L K ++ + Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS + R+ G+ G F N+ DHI + F L+ Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ + + + V ++ + G I + + Sbjct: 235 NSRAVIVNSGMDHFQIVKEQVVSMEHDFYGAGSSNTIIDSQAFSFEAAGKLA-------- 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G F NA+ A C+ +G + VPGR E + + G +I+ Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418 VDYAH SL +L + G+II++ G G++ + +R G + ++ I+T D Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476 +P EDP I EI I + +R EAI+ A+ + + D +++AGKG + IV Sbjct: 405 DPNYEDPLAISEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464 Query: 477 NGEKKMSVDCDIIREIL 493 + D + + L Sbjct: 465 GEKVTYPGDYALAEKYL 481 >gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis GM 1503] Length = 394 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%) Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + +G + IG + LTTP L L+ + +GV V +E SSH L Sbjct: 28 RAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 87 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+DG + G+FTNL RDH+D+H + YF AK LF+ + + D + Sbjct: 88 GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 147 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315 M V + + QQ T + LPG + V N Sbjct: 148 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 207 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 LVA + +G+ + L ++ V PGR E + G VDYAH +L +L Sbjct: 208 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 265 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 266 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 324 Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 325 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 380 >gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1057] Length = 481 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 113/490 (23%), Positives = 202/490 (41%), Gaps = 30/490 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +F +++ F + + +S DSR A +F + G F+ +A+ G Sbjct: 16 NFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGETFK-KEFLEKAVTAGLR 72 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 + + + + P+L+V++ ++ +SL A YG + + LA TGT GK+ Sbjct: 73 FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123 Query: 128 SVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + A F QI +S + T+ + LTTP + L K ++ + G TH+ Sbjct: 124 TTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLI 183 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SS + R+ G+ G F N+ DHI + + LL S A+I Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVI 240 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 +++K + + ++ + + L Sbjct: 241 VNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDIQL 293 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F NA+ A C+ +G + VPGR E + + G +++VDYAH Sbjct: 294 IGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNG 351 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDP 425 SL +L + G+II++ G G++ + +R G + ++ I+T D+P EDP Sbjct: 352 VSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDP 411 Query: 426 EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI I + +R EAI+ A+ + + D +++AGKG + IV + Sbjct: 412 LAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVEGEKVTYP 471 Query: 484 VDCDIIREIL 493 D + + L Sbjct: 472 GDYTLAEKYL 481 >gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054] Length = 373 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%) Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + +G + IG + LTTP L L+ + +GV V +E SSH L Sbjct: 7 RAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 66 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+DG + G+FTNL RDH+D+H + YF AK LF+ + + D + Sbjct: 67 GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 126 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315 M V + + QQ T + LPG + V N Sbjct: 127 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 186 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 LVA + +G+ + L ++ V PGR E + G VDYAH +L +L Sbjct: 187 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 244 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 245 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 303 Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 304 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 359 >gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 532 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 228/506 (45%), Gaps = 33/506 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 L + R++ + V+SD+R + AG +FVA+ G + G F A+A+GA A++ Sbjct: 26 DLRVAGAAGRDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGAAAVLTDDD 85 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134 + P+LV R L A+ +YG E+ AVTGT+GK++ + Sbjct: 86 GAALLGDLA----VPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTTYQLD 141 Query: 135 QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G +S IG ++LTTP L L+ + GV +++E SSH Sbjct: 142 HLLRALGFTSGLIGTVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEVSSHA 201 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L HR+DG++ FTNL +DH+D+H Q+YF AK LF + ++ Sbjct: 202 LALHRVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRGVVVVDDAWGLR 261 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + A R + G + +G+ LPG F V Sbjct: 262 MAEAAQVPVATLRTVPDGPAADWTVSDVEPHGTGTAFTVTHKDGRTLRTSTTLPGHFNVA 321 Query: 314 NALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEF----VGTNSRGGRIYVDYAHT 365 NA +A + + G + VVPGR E G + R+ VD+AH Sbjct: 322 NAALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVVVDFAHN 381 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + +LE+ L +R T GR++VVFG GDRD GKRP MG A++ AD+ +VTDD+P EDP Sbjct: 382 TEALELALAALRPTTPGRLVVVFGATGDRDTGKRPAMGAAAVEGADVVVVTDDDPHGEDP 441 Query: 426 EKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +RAE++ G E R AIRTAI D +++AG+G Sbjct: 442 AAVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAGDTVLIAGRG 501 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 HET+ V + ++ D R L Sbjct: 502 HETIQEVAGVDVQL-DDRVEARAALN 526 >gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus sanguinis SK36] gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase, putative [Streptococcus sanguinis SK36] Length = 481 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 114/490 (23%), Positives = 203/490 (41%), Gaps = 30/490 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +F +++ F + + +S DSR A +F + G F+ +A++ G Sbjct: 16 NFRDIVKGEEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSVGLR 72 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 + + + + P+L+V++ ++ +SL A YG + + LA TGT GK+ Sbjct: 73 FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123 Query: 128 SVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + A F QI +S + T+ + LTTP + L K ++ + TH+ Sbjct: 124 TTAYFTYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLI 183 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SS + R+ G+ G F N+ DHI + + LL S A+I Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVI 240 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 +++K + +K A + ++ L Sbjct: 241 VNSGMDHFQIVKEQVASLEHDFYGADSSNT--IKDSQAFSFEATGKLAGNYDI-----QL 293 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F NA+ A C+ +G + VPGR E + + G +++VDYAH Sbjct: 294 IGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNG 351 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDP 425 SL +L + G+II++ G G++ + +R G + ++ I+T D+P EDP Sbjct: 352 VSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDP 411 Query: 426 EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI I + +R EAI+ A+ + + D +++AGKG + IV + Sbjct: 412 LAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVEGEKVAYP 471 Query: 484 VDCDIIREIL 493 D + + L Sbjct: 472 GDYALAEKYL 481 >gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter mustelae 12198] gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter mustelae 12198] Length = 434 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 122/442 (27%), Positives = 191/442 (43%), Gaps = 40/442 (9%) Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-------------HPENILAVT 121 L D S +S+ +L V+ +R R G+ P I+ +T Sbjct: 13 KYAFLSDDSREAQSDEAVLFVETSRNAFFAEQMRKEGRDILHYRDLKEYFTFPAQIIGIT 72 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSS 179 GT+GK++ A+ + + ++G +G + LTTP + L + L+ L Sbjct: 73 GTNGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILELYEDLALLHE 132 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G + +E SSH + Q R+ G+ A TN+ DH+DYH+T +Y K Sbjct: 133 LGCEVLVMEVSSHAISQDRIFGLDFAAKILTNITSDHLDYHKTLASYIATK--------- 183 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D K + K NA + G +K T+ +G++ Sbjct: 184 -----NAFLSDGGLKIINKDEENANFSPKNTKSYGVKNPCDLQAKNFDKNHATLQYQGRE 238 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + PL G +YN + G++ +L L+ V GR E V + + Sbjct: 239 YMLKMPLYGLHNLYNIMACVLCVRELFGLEMEQILSSLQDFGGVSGRMEVV---CQNPMV 295 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+AHT + +E I ++ + VVFG GGDRD+ KRP+MG + A VT D Sbjct: 296 IVDFAHTHDGIEKI---LQGFLGQSLSVVFGAGGDRDRSKRPLMGGVVRKYAKKIYVTSD 352 Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I +I+ GI + +R EAI+ A++ ++L V GKG ET I+ Sbjct: 353 NPRSEDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALDHQEPGEILFVLGKGDETHQIL 412 Query: 476 TNGEKKMSVDCDIIREILGLIL 497 + D +IRE+L L Sbjct: 413 ADRVVD-FDDRMVIRELLSCRL 433 >gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis GM 1503] gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis GM 1503] Length = 390 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%) Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + +G + IG + LTTP L L+ + +GV V +E SSH L Sbjct: 24 RAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 83 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+DG + G+FTNL RDH+D+H + YF AK LF+ + + D + Sbjct: 84 GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 143 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315 M V + + QQ T + LPG + V N Sbjct: 144 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 203 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 LVA + +G+ + L ++ V PGR E + G VDYAH +L +L Sbjct: 204 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 261 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 262 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 320 Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 321 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 376 >gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas denitrificans DSM 1251] gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas denitrificans DSM 1251] Length = 433 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 118/478 (24%), Positives = 205/478 (42%), Gaps = 57/478 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 ++ + ++ +S+ A FV N ++ A GA Sbjct: 2 KIEIPDEAFRYITENSQECDADTAFVLTPQN----EKYLQNAKDNGA------------- 44 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 I+ + + ++L+G I+ +TGT+GK++ AS + G Sbjct: 45 --------HSIINIKDV--------AKLFGIEKIKIVGITGTNGKTTTASAIYSFLLDLG 88 Query: 142 LSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + ++ LTTPS + K + S+ +E SSH + Q R+ Sbjct: 89 YRVAMQGTRGFFMNDRVIEEKTLTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRV 148 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +G+ TN+ +DH+D+H+T Y K F++ K + D + Sbjct: 149 EGLNFELKILTNITQDHLDFHKTLGEYIAVKNSFFQDDGRK-----LINKDET------K 197 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + G + + +++N I + F L G F +YN + A Sbjct: 198 SSFNFKNTFTYGIENSATYRLIAYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAI 257 Query: 320 G-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G V ++ V GR E V + + VD+AHT + ++ +L ++ Sbjct: 258 AATHLLSGKKLEEVTAVVDNFAGVSGRMEQVSESPN---VIVDFAHTPDGIQQVLNALKE 314 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 ++VVFG GGDRD+ KRP+MG++A LA +T DNPR+EDP+ I +I+ GI Sbjct: 315 ---KELLVVFGAGGDRDRTKRPLMGRVAASLAKKLYITSDNPRTEDPQDIVNDILEGIQD 371 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + NR +AI A+ + +V+V+ GKG ET I+ + +K D +++REIL Sbjct: 372 KSIVQVELNRRKAIENALSEQKENEVVVILGKGDETYQIIYD-QKFPFDDREVVREIL 428 >gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Nitratifractor salsuginis DSM 16511] gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitratifractor salsuginis DSM 16511] Length = 434 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 114/391 (29%), Positives = 180/391 (46%), Gaps = 23/391 (5%) Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167 +G ++ VTGT+GK++ + + + G S+ G ++ +TTPS Sbjct: 55 WGLKDMKVIGVTGTNGKTTTTALIYSLLIDLGYSAALQGTRGLFVDDRPIEEKHMTTPSI 114 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + + G + +E SSH +DQ R++G+ TN+ RDH+DYH T + Y Sbjct: 115 LETLWNMKRAKEAGAEYFVMEVSSHAIDQDRIEGLDFALKVHTNVTRDHLDYHGTLEEYR 174 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 K F + K +K+ +K + G + ++ N Sbjct: 175 RVKSLFFSDDSLKLL----------NKDEIKSITFNPKNAYTYGVEEPATFKVLAYSLQN 224 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRF 346 + + F + G F +YN L A + A + + +E V GR Sbjct: 225 GISAVVQFRQEQEAFFSNMMGLFNLYNLLAAIASVKLLTDRPLAEICDVVENFGGVSGRM 284 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V S I VD+AHT + + +L +++ ++VVFG GGDRD+GKRP MG +A Sbjct: 285 EVV---SAKPTIIVDFAHTDDGMYRVLDSLKD---KDLVVVFGAGGDRDRGKRPRMGAVA 338 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLV 463 A VT DNPRSEDPE I AEI+ G+ G +R EAI AI+ L + ++L+ Sbjct: 339 GRFAKKIYVTSDNPRSEDPEAIIAEILQGLKGKEGVRAIVDRREAIERAIDELQEDEILL 398 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + GKG E+ + G K D +++R+IL Sbjct: 399 ILGKGDESTQEIA-GVKHPFDDREVVRQILE 428 >gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter hominis ATCC BAA-381] gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter hominis ATCC BAA-381] Length = 429 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 124/471 (26%), Positives = 189/471 (40%), Gaps = 59/471 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S Q G F + D + F A+ GA+ I + A + + + I Sbjct: 8 TFITDNSNECQNGAYF-----MQIDANMKFADSALKNGAKIISIDEAKKMLNINKNI--- 59 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ +TGT+GK++ A+ + G G Sbjct: 60 --------------------------KIVGITGTNGKTTTAAAIYSTLLDLGFKCGLSGT 93 Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + LTT S L S + +E SSH + Q+R+ G+ Sbjct: 94 RGAFINDCRIDEKGLTTSSVFKTIGYLYEASKEDCEFFIMEVSSHAIAQNRIQGLNFALK 153 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+DYH+T + Y K F++ P + Sbjct: 154 IFTNLTQDHLDYHKTMEEYARVKSSFFKDDTP-----------KLINKDAGGITYNETNA 202 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326 + + + ++ + + PL GEF +YN + A I Sbjct: 203 RTYALKQIATYSVLAYSVKGAIDALLRTPDGEIQIESPLVGEFNLYNLMAAFAAVKILTN 262 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D+ + E L V GR + V SR + VD+AHT + +E +L ++ +I Sbjct: 263 YDNKKIAEALANFGGVEGRVQIV---SRNPYVVVDFAHTPDGIEKVLNALKDHE---LIA 316 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKG 443 VFG GGDRD+ KRP MG I A AI+T DNPRSEDP I EI G+ I+ Sbjct: 317 VFGAGGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKNKIIKIE 376 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 NR EAI+ AI + +++V+ GKG ET + G K D + + EIL Sbjct: 377 NRAEAIKKAISLAKNGEMVVILGKGDETYQEIK-GVKHHFNDKECVLEILN 426 >gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1] gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1] Length = 499 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 122/510 (23%), Positives = 220/510 (43%), Gaps = 28/510 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57 M+ +D + E +N+ I + E + +++ DSR + + +FV + G + Sbjct: 1 MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 ++ ++ IV S N P +V N++ L++ ++ +G + Sbjct: 57 EYLTASLLDKISGIVTSRK------EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110 Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172 IL +TGT GK+S + + + + T + LTTP L Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G ++ +E SS ++R+ GI G+F N+ DHI + F + Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291 + L + DDA+ +E + A + G + +SV K + + Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESIF 288 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ +G +FL +PG F +YNA VA + +G + L +L + PGR + T Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S G I VDYAH ++ +L ++ G+II+V G GD+ + +R G++ Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVISKFV 406 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ N D++V+A Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAA 466 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496 KG + + + D + E L I Sbjct: 467 KGEDAFQKTNHVDVPYLGDKKVAEEFLAEI 496 >gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429] gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429] Length = 499 Score = 210 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 219/507 (43%), Gaps = 28/507 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57 M+ +D + E +N+ I + E + +++ DSR + + +FV + G + Sbjct: 1 MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 ++ ++ IV S N P +V N++ L++ ++ +G + Sbjct: 57 EYLTASLLDKISGIVTSRK------EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110 Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172 IL +TGT GK+S + + + + T + LTTP L Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G ++ +E SS ++R+ GI G+F N+ DHI + F + Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291 + L + DDA+ +E + A + G + +SV K + + Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESIF 288 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ +G +FL +PG F +YNA VA + +G + L +L + PGR + T Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S G I VDYAH ++ +L ++ G+II+V G GD+ + +R G++ Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGKDRRSQFGEVISKFV 406 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ N D++V+A Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAA 466 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + + + D + E L Sbjct: 467 KGEDAFQKTNHVDVPYLGDKKVAEEFL 493 >gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC 3537] Length = 469 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 97/482 (20%), Positives = 177/482 (36%), Gaps = 37/482 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + D+R ++ +FV + GN ++ A+ G IV + + + P Sbjct: 1 MHYDTRQVKPNTLFV-VKGNFN--PKYLENAV--GITGIVTTKPLDI---------DIPQ 46 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SF 145 +V NT++ LSL ++ + + + + T K + + S Sbjct: 47 WIVSNTQQALSLLSAEFFDRPQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFST 106 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T +S + + LTTP L K + G+TH+ +E SS + R+ G+ Sbjct: 107 VDRITGPQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFD 166 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G+F N+ DH + H T + Y K+ L + D + Sbjct: 167 VGTFLNISPDHIGPNEHPTFEDYLAHKLMLLDHSDTIVINDETDHHDEIFSHAKQNHEAG 226 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYNA 315 + + Q + + + Sbjct: 227 KSLYTYSSNRQNQGDYVFISNDSAIHESHFTVSEQHKVEQLSEIIGHYRLNIPGDFNESN 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LK 374 +AA + + +PGR + S G +VDYAH S+ + Sbjct: 287 ALAALMIAGFAGAKHQDMVQGLDEVFIPGRMLSMPIPSHGV-AFVDYAHNYASMHALLSF 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +G++IVV G G++ +R GK+ +LAD+ +T D+P+ EDP I EI Sbjct: 346 AQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELADVVFLTADDPQYEDPADIANEIAC 405 Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I + +RI+AI AI +QD+++VAGKG + + + D +++ Sbjct: 406 HINNDHVVVHFEMDRIKAIHAAIASAGEQDIVIVAGKGEDPYQKINGQDVPYIGDYAVVK 465 Query: 491 EI 492 ++ Sbjct: 466 QL 467 >gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacterales bacterium GD 1] gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacterales bacterium GD 1] Length = 431 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 117/480 (24%), Positives = 208/480 (43%), Gaps = 57/480 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 ++ ++ VS +S A FV + + ++ A GA Sbjct: 2 KIELPNQEYKYVSENSSECGADTAFV-LSAQNK---KYLQDAKDNGA------------- 44 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 I+ + + + L+G I+ +TGT+GK++ AS + G Sbjct: 45 --------HSIINIKDI--------AELFGIDKIKIVGITGTNGKTTTASAIYSFLLDLG 88 Query: 142 LSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + G + + LTTPS + K + G +E SSH + Q R+ Sbjct: 89 YKTAMQGTRGFFMNDEVIEGKSLTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERI 148 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +G+K TN+ +DH+DYH+T + + E +I D+ S +K Sbjct: 149 EGLKFELKILTNITQDHLDYHKT----IGEYIAVKNSFFQDEGKKLINKDEPRSAFNIK- 203 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G + + +++N I + F L G F +YN + A Sbjct: 204 ------NTFTYGIENPASYKLMAYSLNNASSGIIQHFKEVVPFTSSLHGFFNLYNLMAAI 257 Query: 320 -GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + + ++E ++ V GR E V + VD+AHT + ++ +L ++ Sbjct: 258 GAVDLLVDEKLEKIVEVVDNFAGVSGRMEQV---CELPNVIVDFAHTPDGMQQVLNALKE 314 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 ++VVFG GGDRD+ KRP+MG++A LA +T DNPR+EDP+ I +I+ GI Sbjct: 315 ---KELLVVFGAGGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDILEGIED 371 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + NR +AI A++ + +V+V+ GKG E I+ + ++ D +++RE+L + Sbjct: 372 RSIVSVELNRKKAIEMALDDQGEGEVVVILGKGDEAFQIIYD-KQFPFDDREVVRELLNI 430 >gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC BAA-1163] gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC BAA-1163] Length = 499 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 122/510 (23%), Positives = 219/510 (42%), Gaps = 28/510 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57 M+ +D + E +N+ I + E K +++ DSR + + +FV + G + Sbjct: 1 MR-EDFTNEIVTESLNEAGILVEKPSEIKRRFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 ++ ++ IV S N P +V N++ L++ ++ + + Sbjct: 57 EYLTASLLDKISGIVTSR------TEKIDLPNLPHWIVSNSQIALAVLSAEFFVHPEKKL 110 Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172 IL +TGT GK+S + + + + T + LTTP L Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G ++ +E SS ++R+ GI G+F N+ DHI + F + Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291 + L + DDA+ +E + A + G + +SV K + + Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESVF 288 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ +G +FL +PG F +YNA VA + +G + L +L + PGR + T Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S G I VDYAH ++ +L ++ G+II+V G GD+ + +R G++ Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVISKFV 406 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ N D++V+A Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKANTNDLVVLAA 466 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496 KG + + + D + E L I Sbjct: 467 KGEDAFQKTNHVDVPYLGDKRVAEEFLAEI 496 >gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 427 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 202/467 (43%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I + I I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFQAQALEKGAKII----DVNECKKLLKIDEKIQI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+K +A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H T + Y AK F + + + + Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ ++ + + F PL G F +YN LVA+ + D Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISEFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ D++V+ GKG ET + G K D ++ EIL Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423 >gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas sp. TJI-51] gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas sp. TJI-51] Length = 419 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 201/419 (47%), Gaps = 18/419 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ + AY Sbjct: 6 SKLFAHASRDPMIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADAL----ARGAAAVAY 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 Q + ++ P++ V LS A R YG+ + + VTGT+GK+SV + Q Sbjct: 62 EEQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQ 121 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G IG T Q RLTTP PI + L L G V++E SSH L Sbjct: 122 ALELLGKRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHAL 181 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ + TNL RDH+DYH + QAY AK +LF + + DD + + Sbjct: 182 EQGRVAALAFDIAVMTNLSRDHLDYHGSMQAYEAAKAKLFAWPSLRCQVVNL--DDEFGR 239 Query: 255 EVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + + + K + + T+ + L Sbjct: 240 RLAQAFADRAPADPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERILRSQL 299 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N L A +A+ +L + KL GR + +G ++ + VDYAHT Sbjct: 300 LGRFNLSNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQRLGGGAKPL-VVVDYAHTP 358 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPRSEDP Sbjct: 359 DALEKVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRSEDP 417 >gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 514 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 113/516 (21%), Positives = 202/516 (39%), Gaps = 38/516 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL I E IN ++ DSR + A +FV G ++ Sbjct: 5 MKLSRAIAFFKDNGSATTITQENVADEVIINRITFDSRAVTANTLFVC-KGLNFK-ASYL 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA A + Y+ + P ++V++ R ++ A+ Y + P +A+ Sbjct: 63 KDAVDRGAVAYLSEQDYAA---------DIPGIIVEDIRLAMAQLANFFY-QSPWQDVAI 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG---------PTSTISSFAQDNRLTTPSPIYLA 171 +G +G + + Q L S + G + + LTTP + L Sbjct: 113 SGITGTKGKTTTAGFVNQILTLDSQEKGQPLPGFVSSTFNYDGLEKTPSTLTTPEAMDLY 172 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + L+ + GV ++E SS L HR D +K+ +F N+ DHI + Sbjct: 173 EMLATMRDNGVKRATMEVSSQALKYHRADDVKMEVVAFLNISPDHISPVEHPTFADY--F 230 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKR----AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + + A+I D + +E++K + +S ++ Sbjct: 231 QSKLRIFDHGKVAVINEDTDHYEEILKAAEDAENIQRIVTVSRKNPAADYFADELAFSET 290 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 KQ + +G++ + G F + NALVAA + ++ A + + L GR E Sbjct: 291 KQTFVVKNQGEEIPMALNVLGHFNINNALVAAAIARENDVEWATIQKALGDAKTD-GRME 349 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406 + VD+AH S E + +++ + I +VFG G + + +R MG++A Sbjct: 350 IYRSTDNQLTFVVDFAHNKISFEELFSSVKEMAPDNDIRIVFGSAGGKAENRRADMGRVA 409 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEML---N 457 + +T D+P ED KI AEI I +R +I A + Sbjct: 410 GLNTNEIYLTSDDPNFEDSYKIMAEIEEAINEVNPDAKVRSNLDRTGSIYMAYKDAIASG 469 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +VVAGKG E + + D + +++++ Sbjct: 470 KPTTIVVAGKGSEDTIKINGRNEFYVPDFEYVQQLI 505 >gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter coli JV20] gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter coli JV20] Length = 427 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 198/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F A+ +GA+ I I N I Sbjct: 10 ITDNTLECEKDCYF--LKTAQN--MNFASDALEKGAKII----DVEECKKLLKIDENIKI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+K A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H + Y AK F + + + + Sbjct: 157 NITQDHLDFHGNFENYKAAKELFFTDESL-----------KFINKDTLMIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ + ++++ + F PL G F +YN L A+ + + Sbjct: 206 GIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVANG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI A+++ K D++V+ GKG E + G K D I+ EIL Sbjct: 378 EAINKALKLKEKDDLVVILGKGDENTQEIK-GIKHPFSDKAIVNEIL 423 >gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus casseliflavus ATCC 12755] gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus casseliflavus ATCC 12755] Length = 506 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 100/499 (20%), Positives = 189/499 (37%), Gaps = 23/499 (4%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F G ++ Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI QG + + + Y ++V + R+ +++ A YG E ++ + Sbjct: 74 AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGNPQEQLVTIGI 125 Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 T K + +G S + LTTP + L K ++ Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ GI G+F N+ DHI + ++ + EL Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + I+ + + + ++ G +++ + + S Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGMDLKSFALTAASDVL 303 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + AA L + S + + ++PGR V G Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH S + + + R + GR++ V G G + Q +R MG+ + AD +T Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPDGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 D+P E+ I EI I I + +R +A++ AI + +D++++AGKG E Sbjct: 423 SDDPDFEEAAAIAKEIADAITNPEVAIIHEMDRAQAVKLAIAEADGRDIVIIAGKGAEQY 482 Query: 473 HIVTNGEKKMSVDCDIIRE 491 V + D + ++ Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501 >gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter concisus 13826] gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter concisus 13826] Length = 427 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 195/467 (41%), Gaps = 57/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DS + G FV F+ A GA+ I + L + Sbjct: 10 ITDDSNECEQGAYFV----QTTANAKFVEHAAKNGAKIITLEECKKLLKIDENL------ 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 I+ +TGT+GK++ A+ + + + G G Sbjct: 60 -----------------------KIVGITGTNGKTTTAAAIYETLRNLGKKCGLSGTRGA 96 Query: 153 I--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 D LTT + + L S QG + +E SSH + Q R++ + FT Sbjct: 97 FIEGEQIDDKALTTSAILKTLSYLKAASEQGCEYFVMEVSSHAIAQKRIESLNFALKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH++ + R+ ES +I DD K K A+ + Sbjct: 157 NLTQDHLDYHKSME----EYARVKSSFFDDESVKLINIDDGGVKFNPKNAYTYAIK---- 208 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDS 329 V + + I D + L GEF +YN + A +C+ D+ Sbjct: 209 ---KPASFAPIVYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLLERPDA 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A + + + K V GR E V S + VD+AHT + +E +L ++R + +I VFG Sbjct: 266 AALSKAISKFKGVSGRMEVV---STDPLVIVDFAHTPDGIEKVLNSLRHL---NLIAVFG 319 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446 GGDRD+ KRP MG IA A I IVT DNPRSE+PE I EI G+ I NR Sbjct: 320 AGGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNENLIRNANRK 379 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI AI L LV+ GKG E + G K D +++ E+L Sbjct: 380 EAIALAISKLEPGWALVILGKGDEPYQEIK-GVKHPFSDKEVVIELL 425 >gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter coli RM2228] gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter coli RM2228] Length = 427 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 198/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F A+ +GA+ I I N I Sbjct: 10 ITDNTLECEKDCYF--LKTAQN--MNFASDALEKGAKII----DVEECKKLLKIDENIKI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+K A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H + Y AK F + + + + Sbjct: 157 NITQDHLDFHGNFENYKAAKELFFTDESL-----------KFINKDTLMIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ + ++++ + F PL G F +YN L A+ + + Sbjct: 206 GIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V I VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVANG-----IIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI A+++ K D++V+ GKG E + G K D I+ EIL Sbjct: 378 EAINKALKLKEKDDLVVILGKGDENTQEIK-GIKHPFSDKAIVNEIL 423 >gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis ATCC BAA-430] gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis ATCC BAA-430] Length = 446 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 126/492 (25%), Positives = 202/492 (41%), Gaps = 67/492 (13%) Query: 20 IFPMQWRERKINEVSSDSRHI------QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + I +S DSR + F+ NK ++ A G E + Sbjct: 4 NLDSNFSNSHIRFISDDSREVLSNECNAKNCAFLITKSNKC----YLKNAKENGFEIFIT 59 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + ++FL I+A+TGT+GK++ A+ + Sbjct: 60 PQ---------------------DLKQFL---------DLNLKIIAITGTNGKTTTAAMI 89 Query: 134 QQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 I G +G ++ LTTPS + + A++ + T+ +E SS Sbjct: 90 YSILLDLGYKVALLGTRGFFINGVKKREKGLTTPSLLEIYSAITEARKENCTYFVMEVSS 149 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H + Q R++G++ TN+ DH+DYH+T + Y L +I D+ Sbjct: 150 HAIVQERIEGLEFTLKILTNITSDHLDYHKTLENY---IATKNSFFLSPLDLKLINKDEP 206 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ +++A G + + + A I+ ++ L G+ Sbjct: 207 NARYALQKAITYGIESPATFQVRAYSLKDGITAQ-------IAYGKEESSLQCSLFGKHN 259 Query: 312 VYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YNAL A + + + E LE V GR + V S+ I VD+AHT + +E Sbjct: 260 LYNALAAISAVKLLENEPLQEICEKLENFGGVLGRMQVV---SQNPLIIVDFAHTEDGME 316 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 I ++ +I VVFG GGDRD+ KRP MG A A +T DNPRSE P I Sbjct: 317 KIFQS---FPHRKIAVVFGAGGDRDKTKRPKMGLCAAKYAQKIYITSDNPRSEIPSAIIQ 373 Query: 431 EIIHGIPGFIE-------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 EI +GIP + + NR +AI AI L +VL++ GKG ET I+ + Sbjct: 374 EIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVLLILGKGDETYQIIGDST-LHF 432 Query: 484 VDCDIIREILGL 495 D + ++ L L Sbjct: 433 DDTEEAQKALAL 444 >gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Tropheryma whipplei TW08/27] gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei TW08/27] Length = 509 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 127/506 (25%), Positives = 221/506 (43%), Gaps = 24/506 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DLI + L + + Q+ +R ++ ++ ++ ++ IFVA G G F+ Sbjct: 9 RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + A++ + S + + +TPILV D+ R L + A R+Y I + Sbjct: 65 QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK+S ++ + G+S + +S + LTTP L + Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 181 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++EASSH +++ RL I L +FTNL +H++ H+ +AY+ AK LF + Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296 + A+I D Y + K + + F + IS Sbjct: 240 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 299 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352 G + L G+ N +A + +GID + L K V+PGR E T Sbjct: 300 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 359 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VD+ HT +++E L ++IT GR+I + G RD KR +G++ +D Sbjct: 360 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +TD + R E+P +IR I+ G+ + + +A+ AI++ D ++ +G G Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAIDIAKSDDTVLCSGFG 478 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + V G+K D +R L Sbjct: 479 DDPYLDVL-GKKIPYSLRDEVRRGLE 503 >gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 514 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 126/499 (25%), Positives = 215/499 (43%), Gaps = 23/499 (4%) Query: 11 FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ + + ++ + S ++ G ++V + G G + A GA Sbjct: 19 LAQLVALFGLDVRGDLDGVEVTGAALASSAVEPGDLYVGVPGRNAHGAAYAAAAAEAGAV 78 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127 A++ + PI+V + R L A+ ++ + + VTGT+GK+ Sbjct: 79 AVLT----DGDGADLAAAAGLPIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKT 134 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV + I + G+ + A + LTTP L L+ + +GV + Sbjct: 135 SVVYLLYAILGQLGIVAGLTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAA 194 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E S+ L +HR+DGI+ FTNL DH+D + YF AK+ LF+ + + Sbjct: 195 IEVSAQALSRHRVDGIEFDVAGFTNLSHDHLDDYTAMPDYFAAKLELFQPDRARRGVVTV 254 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305 + + +++++ + SV + + + + G + P Sbjct: 255 DS--EWGHRLVEQSRIPVTTLSSVAGSEADWRVTVLEETLARTAFALEGPGGRLLETSVP 312 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G + NA +A + + G D + +PGR E + + RG +++D Sbjct: 313 LLGAYNASNAALAIVMLVESGYDLDAIGAALERDGGIDAYIPGRAERL-SGDRGPVVFID 371 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y HT ++ L +R +T+GRI++VFG GDRD KR MG IA AD ++TD +PR Sbjct: 372 YGHTPDAFSSTLAALRRVTAGRIVMVFGADGDRDITKRAEMGAIAARGADAVVITDFHPR 431 Query: 422 SEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP IRA ++ G + E + A RTA+ + + DV++ AG GHE Sbjct: 432 WEDPATIRAALLEGARNAVPERDLYEVPDPRTAFRTALSLAGEGDVVLYAGPGHEDYQE- 490 Query: 476 TNGEKKMSVDCDIIREILG 494 GE+ D R L Sbjct: 491 AAGERIPYSARDDARLALR 509 >gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Campylobacter jejuni subsp. jejuni 1336] gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Campylobacter jejuni subsp. jejuni 1336] Length = 427 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 197/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I + I I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+ A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H T + Y AK + + + Sbjct: 157 NITQDHLDFHGTFENYKEAKELF-----------FTDESLKFINKDALAIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ ++ + + F PL G F +YN LVA+ + D Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ D++V+ GKG ET + G K D ++ EIL Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423 >gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] Length = 485 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 111/462 (24%), Positives = 182/462 (39%), Gaps = 27/462 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + ++S DSR A +F G ++ AI QG + V Y Sbjct: 33 EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V + RK ++L A Y ++ TGT GK++ A F + I + Sbjct: 89 -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141 Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T+ + LTTP + L + +S G+TH+ +E SS R+ Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ L G F N+ DHI + F+ +L+ ++ + Y + + A Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317 ++ G + + S E + Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376 +A + A+ S+ + K VPGR + + ++ G +YVDYAH SL+ + Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI EI I Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 + +R EAIR A+ QD +V+AGKG + Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQK 480 >gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase Length = 509 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 128/506 (25%), Positives = 222/506 (43%), Gaps = 24/506 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DLI + L + + Q+ +R ++ ++ ++ ++ IFVA G G F+ Sbjct: 9 RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + A++ + S + + +TPILV D+ R L + A R+Y I + Sbjct: 65 QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK+S ++ + G+S + +S + LTTP L + Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 181 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++EASSH +++ RL I L +FTNL +H++ H+ +AY+ AK LF + Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296 + A+I D Y + K + + F + IS Sbjct: 240 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 299 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352 G + L G+ N +A + +GID + L K V+PGR E T Sbjct: 300 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 359 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VD+ HT +++E L ++IT GR+I + G RD KR +G++ +D Sbjct: 360 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +TD + R E+P +IR I+ G+ G + + +A+ AI++ D ++ +G G Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 478 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + V G+K D +R L Sbjct: 479 DDPYLDVL-GKKIPYSLRDEVRRGLE 503 >gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni IA3902] gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni 305] Length = 427 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 197/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I + I I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+ A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H T + Y AK + + + Sbjct: 157 NITQDHLDFHGTFENYKEAKELF-----------FTDESLKFINKDALAIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ ++ + + F PL G F +YN LVA+ + D Sbjct: 206 GIENPALYQIKAYSLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ D++V+ GKG ET + G K D ++ EIL Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423 >gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 641 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 135/545 (24%), Positives = 217/545 (39%), Gaps = 83/545 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87 ++N VS DSR ++ G +FVA+ G K DGH + QA+AQGA A+V+ + L + T Sbjct: 40 QVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQTDL 99 Query: 88 SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +++V +T L+ +YG N+ +TGT GK++ + + + + + Sbjct: 100 LSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTTAMITWLLNKVDYPAG 159 Query: 146 QIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG ++ TTP L + L+ L + G V +E SS QHR+D + Sbjct: 160 SIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCMEVSSQAAVQHRVDALA 219 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTN DH+DYH T + Y AK LF L K + A++ ADD + + + Sbjct: 220 WQTMTFTNFTVDHLDYHHTVENYALAKASLFRG-LSKAATAVLNADDPLAYYLAQLTQAQ 278 Query: 264 GCRVLSVGY------------------------------------------------QGK 275 G+ Sbjct: 279 KVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEKIPPESSREILCKAAAAGR 338 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + V ++ Q IS + PL G F + NAL A + I + L Sbjct: 339 VVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALAAIATAMVICPNIDLRTWA 398 Query: 336 LEKLHVV--PGRFEFVGTNSRGGRIY-------------------VDYAHTSNSLEMILK 374 + PGR E + + +D+AHT ++E +L Sbjct: 399 AAMATMPAVPGRLEIIDGQGQACPTCRPSNGKLNLEDTTTPYRVVIDFAHTPGAMEALLT 458 Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R ++ V+ G+RD+GKRP++ + LAD ++T + E+P +I AE+ Sbjct: 459 EVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLADRIVLTLEEVGQENPAEILAEL 518 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE-TVHIVTNGEKKMSVDCDI 488 G R EAIR I L D VV G E T +I N V+ D Sbjct: 519 QAGFRQPENIPVVPLRQEAIRYVISRLEPGDYFVVPSLGDEHTYNI--NNVAYPYVERDF 576 Query: 489 IREIL 493 +++ L Sbjct: 577 VKQCL 581 >gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter lari RM2100] gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter lari RM2100] Length = 427 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 116/469 (24%), Positives = 197/469 (42%), Gaps = 59/469 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +S+ + F + ++ F QA+ + A+ I + + I N Sbjct: 8 TFICDNSKECEKDCFF--LKTSQN--EKFTHQALEKQAKII----SIAECKSLLNIDENI 59 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I+ +TGT+GK++ A + I G +G Sbjct: 60 KII-------------------------GITGTNGKTTTAGAIYSILLDLGYKCALMGTR 94 Query: 151 STISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + LTT + + LS S Q + +E SSH L Q+R++G++ A Sbjct: 95 GSFINDKNITPKGLTTAPILQTLEILSLASEQKCEFLIMEVSSHALVQNRIEGLEFKAKI 154 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+D+H + + Y AK + + Sbjct: 155 FTNLTQDHLDFHGSFENYKQAKESF-----------FTDECMKFINKDASAIAFNVKNSF 203 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGI 327 S G + + K A+ N + ++ +F L G F +YN L A+ + Sbjct: 204 SYGIENPSYYHIKAYALKNGIEAVVNFGKNNFTIESSLVGLFNLYNLLAASACVNELVRP 263 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + + + + GR + V + + VD+AHT + +E +L ++ +IVV Sbjct: 264 NLKELEKAISNFGGIEGRMQVVAKD-----VIVDFAHTPDGIEKVLDALK---YKNLIVV 315 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444 FG GG+RD+ KRP+M KIA A I+T DNPR E+P I +I+ GI + + Sbjct: 316 FGAGGNRDKTKRPLMAKIAKYYAKKLIITSDNPRFEEPMDIINDILSGIKKDENVFVECD 375 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +AI+ A+E N + +V+ GKG ET + G K D +++ EIL Sbjct: 376 RKKAIKKALEFKNDDEFVVILGKGDETYQEIK-GVKYPFNDKEVVLEIL 423 >gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni RM1221] gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni RM1221] Length = 427 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I + I I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+ A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H T + Y AK F + + + + Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ ++ + + F PL G F +YN LVA+ + D Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ D++V+ GKG ET + G K D ++ EIL Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423 >gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei str. Twist] gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei str. Twist] Length = 531 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 128/506 (25%), Positives = 222/506 (43%), Gaps = 24/506 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DLI + L + + Q+ +R ++ ++ ++ ++ IFVA G G F+ Sbjct: 31 RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 86 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + A++ + S + + +TPILV D+ R L + A R+Y I + Sbjct: 87 QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 144 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK+S ++ + G+S + +S + LTTP L + Sbjct: 145 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 203 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++EASSH +++ RL I L +FTNL +H++ H+ +AY+ AK LF + Sbjct: 204 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 261 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296 + A+I D Y + K + + F + IS Sbjct: 262 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 321 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352 G + L G+ N +A + +GID + L K V+PGR E T Sbjct: 322 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 381 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VD+ HT +++E L ++IT GR+I + G RD KR +G++ +D Sbjct: 382 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 440 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +TD + R E+P +IR I+ G+ G + + +A+ AI++ D ++ +G G Sbjct: 441 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 500 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 + V G+K D +R L Sbjct: 501 DDPYLDVL-GKKIPYSLRDEVRRGLE 525 >gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter showae RM3277] gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter showae RM3277] Length = 430 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 115/398 (28%), Positives = 166/398 (41%), Gaps = 23/398 (5%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159 L+ L I+ +TGT+GK++ A+ + G G D Sbjct: 46 LAECKRLLGIDENIKIIGITGTNGKTTTAALICATLLNLGYGCGLCGTRGAFINGERIDD 105 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 LTT + L S +G + +EASSH + Q R++ + FTNL +DH+DY Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEASSHAIAQKRIESLDFAMKIFTNLTQDHLDY 165 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H T + Y K F + A + + L+ Sbjct: 166 HGTFEEYARVKSEFFADD------APKLINIDDRGGIK----FNPANALTYALHANADFA 215 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHLEK 338 ++ + L GEF +YN + AA + K Sbjct: 216 PGEYSLEGGIHCALKTPRGQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIALAASK 275 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V + VD+AHT + +E +L +R +I+ VFG GGDRD+ K Sbjct: 276 FDGVEGRMEVVSREPL---VIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455 RP MG IA A +VT DNPRSE+PE I AEI G+ NR EAI+ A+E Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLEMNERVKCIANRKEAIKYALES 389 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L + ++LV+ GKG ET + G K D ++RE+L Sbjct: 390 LAQDEILVILGKGDETYQEIK-GVKYPFSDKQVVRELL 426 >gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 414] gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 414] Length = 427 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 199/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I V+ L I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFHTQALEKGAKIIDVNECKKLLKIDEKI------ 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 I+ +TGT+GK++ A+ + I G G Sbjct: 60 -----------------------KIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+K A FT Sbjct: 97 FINDESIDEKTLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H + Y AK F + + + C + Sbjct: 157 NITQDHLDFHGNFENYKEAKELFFTDESL-----------KFINKDALAIKFNVCNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-S 329 G + ++ K ++ + + F PL G F +YN L A+ + Sbjct: 206 GIENPALYQIKAYSLEEGISAIAKNKDQTFHIDSPLLGLFNLYNLLAASACVNELAKPNL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLNTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446 GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ K D++V+ GKG ET + G K D +I EIL Sbjct: 378 EAIKKALELKEKDDLVVILGKGDETTQEIK-GVKYPFSDKVVINEIL 423 >gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 537 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 154/477 (32%), Positives = 229/477 (48%), Gaps = 19/477 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G ++ A+ G G F QA A GA A + A + + Sbjct: 43 VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGA----DLVAAAG 98 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P LVVD+ R L A+R++G+ + + VTGT+GK++ A V+ + + +G ++ + Sbjct: 99 LPALVVDDPRAVLGDLAARIHGRPGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGLL 158 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T + D+ TTP L L+ + + GV ++E SSH L QHR+DG+ L Sbjct: 159 GTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHALVQHRVDGLVLDV 218 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNA 263 FTNL +DH+D+H + + YF AK LF + + A DA + R + Sbjct: 219 ALFTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRASV 278 Query: 264 GCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G T+ + D PLPG+F V NA +AA Sbjct: 279 PVVTVGAGDADWRVTDVRTGRAGSTFHLSGTLPGGPVELDLTCPLPGDFNVANAALAAVA 338 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + +G A+V L VPGR + V + VDYAHT ++L+ +L+ +R IT Sbjct: 339 VLHLGPAPAVVAAGLAAAEGVPGRMQTV-VRDGAPLVVVDYAHTPDALDRVLRTLRGITP 397 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIP 437 GR++ VFG GGDRD+GKRP+MG LAD+A+VTDDNPRSED + A G Sbjct: 398 GRLVAVFGAGGDRDRGKRPLMGAAVAALADVAVVTDDNPRSEDAAAVRAAVLAGARSGPA 457 Query: 438 GFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E +R A+ A+ D +++AGKGHET G D L Sbjct: 458 EVLEVADRAAALDAALARCRGAGDTVLLAGKGHETGQE-AAGVVTPFDDRAAAAHAL 513 >gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 404 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%) Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F QA+ +GA+ I + I I+ Sbjct: 7 AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 39 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174 +TGT+GK++ A+ + I G G + + LTT + + L Sbjct: 40 --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 97 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y AK F Sbjct: 98 QIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 157 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + + + + G + ++ K ++ ++ Sbjct: 158 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISTIVT 206 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + F PL G F +YN LVA+ + D + + + V GR E V Sbjct: 207 NKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 265 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VD+AHT + +E +L ++ ++IVVFG GGDRD+ KRP+MGKI A IA Sbjct: 266 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 318 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ D++V+ GKG E Sbjct: 319 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDE 378 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G K D ++ EIL Sbjct: 379 TTQEIK-GIKYPFSDKVVVNEIL 400 >gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase [Leuconostoc gasicomitatum LMG 18811] Length = 491 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 113/510 (22%), Positives = 209/510 (40%), Gaps = 39/510 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL K +L+ + + + + + + D+R ++A + V + G F Sbjct: 1 MKLT---SKTIEQLLIEQQLLVSKPNIDLAFDFLHYDTRQVKANTLLV-VKGA------F 50 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 P+ + ++ + + P V N +K L++ + + + I Sbjct: 51 RPEYLT-------HTADIEGLITETILDVSLPQWQVTNVQKALAVLSMAFFDYPQKALWI 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172 A TGT GK++ A I + + + T T + + LTTP L K Sbjct: 104 GAFTGTKGKTTAAYMAFNILKDATNNHTALFSTVDRITGTGPGDKKKSDLTTPESYELFK 163 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + G+TH+ +E SS + R+ G++ G+F N+ DHI + F + Sbjct: 164 DMRQAVDNGMTHLIMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIG--PNEHPTFEDYLA 221 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L I+ A+ + K V+ A +V + G+ + V + Sbjct: 222 HKMMLFDHSDQVIVNAESEHLKTVLGHATQTHDKVYTYSLAGQGGNYSYVSRESAIHESR 281 Query: 293 ISVEGKDFD-----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + VE D + + LPG+F NA+ A + G ++ L+ + + PGR Sbjct: 282 LIVEPSDLNELAGEYRLNLPGDFNESNAMAALIMTALAGAKHENMVHGLDVVFI-PGRML 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + G +VDYAH S+ + G+++VV G G++ +R G++ Sbjct: 341 SLPIVGHGV-AFVDYAHNYASMRALLNFAQNQYPEGKVLVVVGSPGNKGVSRRADFGRVV 399 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVL 462 +LADI +T D+P+ E P+ I EI I + +RI+AI AI+ ++D++ Sbjct: 400 SELADIVYLTADDPQFESPKAIADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERDIV 459 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +VAGKG + + + D +++ Sbjct: 460 IVAGKGEDPYQKINGKDVPYIGDYAVVQSY 489 >gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 504 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 122/493 (24%), Positives = 192/493 (38%), Gaps = 29/493 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHL 58 M L DL + W +++ V+ R + G +F AI G + DGH Sbjct: 5 MLLSDLASHLS---LRSGPSVETGWAAAEVSAVTH--RADWVTPGALFAAIRGERHDGHA 59 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 F+ +A +GA A + A S P L V + R L+ A+ L G Sbjct: 60 FLQEAAERGAVAALGE------GLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELK 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAK 172 ++ VTGT GK++ + + + G S+ + TTP L Sbjct: 114 VVGVTGTDGKTTTSWLTAALLRAGGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQG 173 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +E SSH L R+ G+ A +T+L ++H+D+H T + YF AK R Sbjct: 174 LLREMVDARAQAAVIETSSHALTLERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRR 233 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L + +P + D ++ + + + Sbjct: 234 -----LIERAPLAVLNLDDPWTRHLRGVAPQELTYSAAQAGADWRASDLRGEAGGRASFA 288 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + F PL G FQ+ NAL A G+ +A + L + PGR E V + Sbjct: 289 VDGPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVPSR 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLAD 411 R+ D AHT SLE L+ +R +T G++ V G G RD K M +A AD Sbjct: 349 PGQPRVVSDSAHTPLSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVASAWAD 408 Query: 412 IAIVTDDNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T+ + R E+I + G + G+R +AI A+ D +++A KG Sbjct: 409 QVILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIANKGG 468 Query: 470 ETVHIVTNGEKKM 482 E + G Sbjct: 469 EHF--LQRGRTVY 479 >gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Campylobacter jejuni subsp. jejuni S3] Length = 404 Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%) Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F QA+ +GA+ I + I I+ Sbjct: 7 AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 39 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174 +TGT+GK++ A+ + I G G + + LTT + + L Sbjct: 40 --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 97 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y AK F Sbjct: 98 QIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 157 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + + + + G + ++ K ++ ++ Sbjct: 158 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVT 206 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + F PL G F +YN LVA+ + D + + + V GR E V Sbjct: 207 NKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 265 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VD+AHT + +E +L ++ ++IVVFG GGDRD+ KRP+MGKI A IA Sbjct: 266 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 318 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ D++V+ GKG E Sbjct: 319 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDE 378 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G K D ++ EIL Sbjct: 379 TTQEIK-GIKYPFSDKVVVNEIL 400 >gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas autotrophica DSM 16294] gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas autotrophica DSM 16294] Length = 431 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 195/433 (45%), Gaps = 33/433 (7%) Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 ++ + + + +++ I+ +++ + L+G + I+ +TGT+GK++ Sbjct: 25 AFVLTHQNRAYLEDAKQHNAHS-IIKIEDI--------AELFGVNKIKIIGITGTNGKTT 75 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVS 186 AS + G + G + LTTPS + K + G + Sbjct: 76 TASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTTPSVLNTYKHIYQAVCAGCEYFI 135 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R++G+K TN+ +DH+DYH+T + Y K Sbjct: 136 MEVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIEEYIAVKNGF-----------FQ 184 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + +A + G + + +++ I + F L Sbjct: 185 DESKKLINKDEPKAAFNFKNAYTYGIENPATYRLMAYSLNEGSSGIIQHFQEIVPFTASL 244 Query: 307 PGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F +YN + A I + + ++ V GR E V + VD+AHT Sbjct: 245 HGFFNLYNLMAAIAATHLITDKTLEEIADVVDNFAGVSGRMEQV---CAAPNVIVDFAHT 301 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + ++ +L ++ +IVVFG GGDRD+ KRPIMG++A LA IVT DNPR EDP Sbjct: 302 PDGMQQVLNALKE---KELIVVFGAGGDRDRLKRPIMGRVAASLAKKVIVTSDNPRHEDP 358 Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 E I +I+ GI I + NR +AI+ A++M ++V+V+ GKG E ++ + EK Sbjct: 359 EIIIDDILEGIQDKTNIIVELNRKKAIQMALDMQEDEEVVVILGKGDEAYQVIYD-EKFA 417 Query: 483 SVDCDIIREILGL 495 D ++++E+L L Sbjct: 418 FDDREVVKELLNL 430 >gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991] gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991] Length = 484 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 131/487 (26%), Positives = 224/487 (45%), Gaps = 27/487 (5%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F +L+ ++ + R + +S DSR ++ +FVAI I +A+ +GA Sbjct: 14 TFTDLLAKVGVSCKDS--RIVRGISDDSREVEQDMLFVAIKATAMK-KEHILEALTKGAV 70 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSS 128 ++ ++ I + ++ L L LYG++ +AV+GT+GK+S Sbjct: 71 -VLCEK---------QPFADANIYEAASLKQKLILLLDTLYGRYEACQCIAVSGTNGKTS 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 VAS++ Q+ IG + TTP I LAK + +TH+ + Sbjct: 121 VASYIAQLLYMQKARVMVIGTGFVKGETIFFETSNTTPGLIALAKYFDIARQKQITHIVM 180 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH + Q R+ I+ A FTN+ DH+DYH T+ Y K +L + + Sbjct: 181 EVSSHAIAQERIARIRFDAVVFTNITADHLDYHITKTHYRFTKFKL----ANYLKKSGVI 236 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +A + ++ H R +S G I ++ V + + ++ + L Sbjct: 237 IYNADYEYMLPLVHMQSHRCVSYGLGAAHIPIEHVVLSESDIRFSLQG----YKIRAHLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G VYN A ++ + E +EKL V GR E V ++++DYAHT+ Sbjct: 293 GLMNVYNVAAALTFMRINDVEYEQLQEDVEKLRAVKGRLEVVYQG--KFQVWIDYAHTAA 350 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L+ +L + + GR+I + GCGG+RD KRPIM +IA+ +D+AI T DNPR E Sbjct: 351 ALKEVLSFAKQVAKGRVISIVGCGGNRDVKKRPIMAEIAVKYSDVAIYTSDNPRFERVCD 410 Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 I ++ +R AI+ A+++ D++V+ GKG E + G++ D Sbjct: 411 ILKDMHAERFLNACVFEHRYYAIKHAVKIAQNSDIIVITGKGSEAFTSIY-GKQYPCNDA 469 Query: 487 DIIREIL 493 ++++L Sbjct: 470 TWVKKLL 476 >gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 450 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%) Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F QA+ +GA+ I + I I+ Sbjct: 53 AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 85 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174 +TGT+GK++ A+ + I G G + + LTT + + L Sbjct: 86 --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 143 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y AK F Sbjct: 144 QIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 203 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + + + + G + ++ K ++ ++ Sbjct: 204 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVT 252 Query: 295 VEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + F PL G F +YN LVA + + D + + + V GR E V Sbjct: 253 NKNQTFHIDSPLLGLFNLYNLLVASVCVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 311 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VD+AHT + +E +L ++ ++IVVFG GGDRD+ KRP+MGKI A IA Sbjct: 312 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 364 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ D++V+ GKG E Sbjct: 365 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDLVVILGKGDE 424 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 T + G K D ++ EIL Sbjct: 425 TTQEIK-GIKYPFSDKVVVNEIL 446 >gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1 [beta proteobacterium KB13] gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1 [beta proteobacterium KB13] Length = 423 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 130/427 (30%), Positives = 200/427 (46%), Gaps = 15/427 (3%) Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVAS 131 A L V + R+YG + VTGT+GK+S A Sbjct: 3 EEANFDASTYLKKYPKIKFLGVRDLAWKQKKVLDRVYGNLNRHIKLYGVTGTNGKTSTAF 62 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 ++ + + S IG S TTP L + + + + +E SS Sbjct: 63 WLNHLLSKLEKPSKLIGTISKDKVVI----NTTPDLFVLYSLFNKGIQKNIKNFVLEVSS 118 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HG+DQ R+ + G FTNL RDH+DYH+T YF +K R F E + KES I Sbjct: 119 HGVDQGRIHELNFEYGIFTNLSRDHLDYHKTMNNYFLSKERFFIENVKKESVINIDNSYG 178 Query: 252 YS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++K S K I++K+ + + ++ + K F + GE Sbjct: 179 MRLANNLIKLNKKIFTFGFSKEANVKIINIKQQFLTNKYSEFSLQIANKIHTFKTNVIGE 238 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSN 367 F +YN + A +C ID V E +++L V GR + + +DYAHT + Sbjct: 239 FNLYNLISAICICYLKKIDIHKVTEVIKRLPVPDGRMNVINKTINNIQKKVIIDYAHTPD 298 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +L+ I+ I G+I++VFGCGGDRD+GKR +MG +A AD +T+DNPR+E+P + Sbjct: 299 GLKKLLQTIKKIYQGKILLVFGCGGDRDKGKRKLMGNVANHYADFVCITNDNPRNENPNQ 358 Query: 428 IRAEIIHGIPGF-IEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I +I G+ +R +AI AI+ N ++V+AGKGHE I+ N +K D Sbjct: 359 IADQICEGVSCLKKIILDRKKAIEYAIKKTNYP--IVVIAGKGHEKYQIIKN-KKIDFSD 415 Query: 486 CDIIREI 492 ++ +I Sbjct: 416 KKVVMDI 422 >gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 260.94] Length = 427 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 118/422 (27%), Positives = 194/422 (45%), Gaps = 33/422 (7%) Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 + + + + I+ V+ +K L + I+ +TGT+GK++ A+ + I Sbjct: 29 NAKFHARALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGKTTTAAAIYSIL 81 Query: 138 QRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G G + + LTT + + L + + +E SSH L Sbjct: 82 LDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALV 141 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R++G+ +A FTN+ +DH+D+H T + Y AK F + + + Sbjct: 142 QNRIEGLNFVAKIFTNITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINK 190 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + G + ++ KV ++ ++ + + F PL G F +YN Sbjct: 191 DALAIKFNVRNAFTYGIENPALYQIKVYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNL 250 Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA+ I D + + + V GR E V + VD+AHT + +E +L Sbjct: 251 LVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLD 305 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ ++IVVFG GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ Sbjct: 306 TLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILS 362 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + +R EAI+ A+E+ D++V+ GKG ET + G K D ++ E Sbjct: 363 GFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNE 421 Query: 492 IL 493 IL Sbjct: 422 IL 423 >gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus RM3267] gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus RM3267] Length = 430 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 115/398 (28%), Positives = 170/398 (42%), Gaps = 23/398 (5%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159 L+ L I+ +TGT+GK++ A+ + G G + D Sbjct: 46 LAECKRLLDIDESIKIIGITGTNGKTTTAAAICATLLNLGYGCGLCGTRGAFVNNERIDD 105 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 LTT + L S +G + +E SSH + Q R++ + FTNL +DH+DY Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEVSSHAIAQKRIESLDFAMKIFTNLTQDHLDY 165 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H T + Y K F + A + + L+ Sbjct: 166 HGTFEEYARVKSEFFADD------APKLINIDDRGGIK----FNPANALTYALHANADFA 215 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHLEK 338 ++ + T+ + L GEF +YN + AA + K Sbjct: 216 PGEYSLEGGIRATLKTPRRQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIARAAAK 275 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V + VD+AHT + +E +L +R +I+ VFG GGDRD+ K Sbjct: 276 FDGVEGRMEVVSREPL---VIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455 RP MG IA A +VT DNPRSE+PE I AEI G+ NR EAI+ A+E Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIANRKEAIKYALES 389 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L + ++LV+ GKG ET + G K D +++RE+L Sbjct: 390 LTQDEILVILGKGDETYQEIK-GVKYPFSDKEVVRELL 426 >gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. doylei 269.97] gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. doylei 269.97] Length = 427 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 192/442 (43%), Gaps = 55/442 (12%) Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 F QA+ +GA+ I + I I+ Sbjct: 31 KFHAQALERGAKII----DVNECKKLLKIDEKIQII------------------------ 62 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALS 175 +TGT+GK++ A+ + I G G + + LTT + + L Sbjct: 63 -GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQ 121 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + +E SSH L Q+R++G+K A FTN+ +DH+D+H T + Y AK F Sbjct: 122 IATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEAKELFFT 181 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + + + G + ++ K ++ + Sbjct: 182 DESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAVATN 230 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + F PL G F +YN LVA+ + D + + + + V GR E V Sbjct: 231 KNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISEFGGVCGRVEQVAKG-- 288 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VD+AHT + +E +L ++ ++IVVFG GGDRD+ KRP+MGKI A IAI Sbjct: 289 ---VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAI 342 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ D++V+ GKG ET Sbjct: 343 ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDET 402 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K D ++ EIL Sbjct: 403 TQEIK-GVKYPFNDKVVVNEIL 423 >gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81116] gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81116] gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni M1] gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni 327] Length = 427 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 59/467 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ ++ + F + + F QA+ +GA+ I + I I Sbjct: 10 ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + +TGT+GK++ A+ + I G G Sbjct: 62 I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96 Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + LTT + + L + + +E SSH L Q+R++G+K +A FT Sbjct: 97 FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFT 156 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ +DH+D+H T + Y AK F + + + + Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329 G + ++ K ++ + + + F PL G F +YN LVA+ + D Sbjct: 206 GIENPALYQIKAYSLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + + V GR E V + VD+AHT + +E +L ++ ++IVVFG Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 GGDRD+ KRP+MG I A IAI+T DNPRSE+P+ I EI+ G + +R Sbjct: 318 AGGDRDKTKRPLMGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRK 377 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI+ A+E+ D++V+ GKG ET + G K D ++ EIL Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423 >gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084] gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084] Length = 532 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 125/517 (24%), Positives = 207/517 (40%), Gaps = 34/517 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 F E S + V DSRH G +FV GN ++ QA+A G Sbjct: 22 ANVFDEAGANGSGGAEGGVSADVCGVDCDSRHAAPGHLFVC-KGNAFR-ASYLAQALAAG 79 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125 + A + + A P LV + R+ ++L ++ +G N +L +TGT G Sbjct: 80 CVGYLCDEARAGE--LAAHCPQVPRLVSHDLRRAMALVSAEAWGHPDRNLGVLGITGTKG 137 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLS 178 KS+VA ++ I + T +++ TTP L + L + Sbjct: 138 KSTVAYMLRSILDSDADGTRGAPHTGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAA 197 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G++H+ +E SS L R+ G+ L F N+G DHI + F + Sbjct: 198 TSGLSHMVMEVSSQALKYDRVVGLGLDVACFLNIGCDHISPVE--HPSFEDYFESKLRIF 255 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS-----------VGYQGKFIHLKKVCAIHN 287 + A++ D + +++RA G V G G + + + + Sbjct: 256 DQACVAVVNLDSDKADVILERAARCGRTVTFSATGQGAGGAPAGAGGADVWAEGISSREG 315 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + Q+ + +PG F NAL A +C A GI V+ L ++ V PGR E Sbjct: 316 RIQMMVRTPSWSEPVTVSMPGLFNADNALAAIAICEACGIGRERVVAGLARVRV-PGRME 374 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406 + T VDYAH S + ++ +GR II V G G + +R + + A Sbjct: 375 LLPTADPKVTGIVDYAHNKLSYQRFFSSMAQEFAGRAIIAVLGAPGGKAYERRRELPQEA 434 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEML---NKQD 460 AD I T+++P + E+I +++ P F +R AIR A+E+ + Sbjct: 435 SKWADYLIYTEEDPAGDPVEEICSQLAAATPAGQDFEVIVDRPAAIRRAVELAFGYPQGA 494 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 ++ + KG ET+ V N D + +G L Sbjct: 495 LVCLLAKGDETLQHVGNSFVPCETDGTLFERAVGERL 531 >gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc argentinum KCTC 3773] Length = 495 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 109/507 (21%), Positives = 206/507 (40%), Gaps = 34/507 (6%) Query: 5 DLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQ 62 +L K +L+ + + ++ + + D+R ++ +FV + G + ++ Q Sbjct: 2 ELTSKTIEQLLTAHHLLVAKPDSDQTFDFLHYDTRQVKDQTLFV-VKGAFRV---EYLAQ 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A G +V + + P V + +K LS+ + + I A Sbjct: 58 A--TGVTGLVTEE---------LLPVDLPQWQVTDVQKALSVLSMAFFDYPQNDLWIGAF 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 TGT GK++ A QI Q T + + + LTTP L K + Sbjct: 107 TGTKGKTTAAYMAFQILQHMTNQHTALFSTVDRITGNQPADKKKSDLTTPESYELFKDMR 166 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G+TH+ +E SS + R+ G++ G+F N+ DHI ++ ++ Sbjct: 167 RAVDNGMTHLVMEVSSQAYLKQRVYGLEFQVGAFLNISPDHIGPNEHPSFEDYLAHKMML 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ +D + + H+ S QG + + + ++ + T++ Sbjct: 227 LDHAEQVIVNAASDQLSAVLAHAKTHHDHVYTYSQTDQGGEYTYQSLESAIHESRFTVAE 286 Query: 296 EG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + LPG+F NAL A + G A ++ L+ + + PGR + Sbjct: 287 SDLAEMNGTYRLNLPGDFNESNALAALIMTALAGAQHADMVAGLDTVFI-PGRMLSLPIP 345 Query: 353 SRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G +VDYAH S+ + G++ VV G G++ +R G++ + AD Sbjct: 346 DHGV-AFVDYAHNYASMRALLQFAQSQYPDGKVSVVIGAPGNKGVSRRADFGRVVSEFAD 404 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 +T D+P+ E P I EI I + +RI+AI+ AI N D+++VAGK Sbjct: 405 TVFLTADDPQFESPMAIAKEIAAHITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIVAGK 464 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494 G + + ++ D +++ +L Sbjct: 465 GEDPYQKINGVDEPYIGDYAVVQNVLN 491 >gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella paramesenteroides ATCC 33313] gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella paramesenteroides ATCC 33313] Length = 518 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 121/517 (23%), Positives = 205/517 (39%), Gaps = 41/517 (7%) Query: 3 LQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L L + L+ +Q + + +I ++ +S + G + I GN + ++ Sbjct: 10 LMTLTADNITTLLADQDLLISAPDFDGEIQHLAYNSNDVVPGTLLF-IKGNFK--AEYLT 66 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 AI +G AI+ S + P V D+ +S+ A Y N+ + Sbjct: 67 DAIEKGVTAIIA-------PASFKHATKLPTWVADDVPAAMSIIAMAFYQYPQNNLALIG 119 Query: 120 VTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 +TGT GK+S A +I + S T + + LTTP + L + + Sbjct: 120 ITGTKGKTSTAYMAYEILRAYTHDKVALSSTLQVITGSEPQYHYRAHLTTPESVDLFRWM 179 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 G+TH+ +E SS R+ G+ G F N+ DHI + + F ++ Sbjct: 180 REAVDNGMTHMVMEVSSQAFKMRRVYGLHFNVGIFLNISPDHIG--ENEHPTFEDYLQHK 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L ++ D + E++ A R Y + + K + Sbjct: 238 MMLFDHSEQIVLNVDSDHFGELIAHAELMVHRDGIWLYGQEDVDSPKADVYFEATDANLH 297 Query: 295 --------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 ++ +PG+F NAL A +G D+ + E LE + Sbjct: 298 GSVFKVREVGQQAEHLHIKGEYTLDMPGDFNQSNALAAMIATRLVGADAPAMAEGLETVK 357 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKR 399 V PGR + + T G IYVDYAH S+ +L+ +R ++ +V G G++ +R Sbjct: 358 V-PGRMQVLNTQKHGT-IYVDYAHNYASIAALLQFVRQNESVNQLAIVVGAPGNKGVSRR 415 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455 P +GK + AD+ +T D+P+ EDP KI EI I + +R +AI AI Sbjct: 416 PGIGKAVSEGADVVYLTSDDPQYEDPAKIADEIQAAITNPKVTIYRELDRTKAIIAAILA 475 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 DV+V+A KG + + + D + I Sbjct: 476 AGPDDVVVLAAKGLDEYQKIDGVDTPYENDWAVANRI 512 >gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp. ART55/1] Length = 404 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 24/398 (6%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKA 173 ++ VTGT GK++VA ++ + R G + +G + TTP IYL + Sbjct: 1 MKVIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVNTTPGTIYLHRK 60 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + + G + +E SS GL R+ G++ +TNL DHI + A+ Sbjct: 61 LADMVANGAEYCVMEVSSQGLMHGRVSGVEFDICVYTNLAPDHIGR---NEHRTFAEYGR 117 Query: 234 FEELLPKESPAIIYADDAYSKEVMK--------RAHNAGCRVLSVGYQGKFIHLKKVCAI 285 ++ L + + D + G R + G + + Sbjct: 118 WKRSLFSKCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTAAGDGNVCMAGAIHRL 177 Query: 286 HNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + I E + +PGEF VYN+L A C IGI ++ + Sbjct: 178 ILHRVMGIGYECERTDGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDSQSD-M 236 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E V RI++DYAH + SLE +L +R R+I +FGCGG+R G+R Sbjct: 237 KVRGRLEPV-EIPGYARIFIDYAHNAVSLENVLTTLRQYRPKRLICLFGCGGNRSAGRRK 295 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEML 456 MG ++ LAD+ ++T DNPR E PE I +I G+ +++ +R++AIR A+E+ Sbjct: 296 GMGFVSGRLADMTVITSDNPRFESPEAIMTDIETGVLEGGGEYVKICSRLDAIRYALEIS 355 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++ D++++AGKGHET + G + + ++IR+IL Sbjct: 356 DRDDIVLLAGKGHETYQDIE-GRRTQMDEREMIRQILE 392 >gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter upsaliensis RM3195] gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter upsaliensis RM3195] Length = 428 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 199/466 (42%), Gaps = 61/466 (13%) Query: 31 NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S + F+ K F +A+ +GA+ Sbjct: 8 TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ V+ T+K L + I+ +TGT+GK++ A+ + I G G Sbjct: 43 --IIDVEETKKLLGI-------DKTIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGT 93 Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + LTT + + L + +G +E SSH L Q+R++G++ A Sbjct: 94 RGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEFAAK 153 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+D+H + + Y AK F + + + + Sbjct: 154 IFTNLTQDHLDFHGSFENYKEAKESFFTDESL-----------KFINKDAFHINFNVKNA 202 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326 + G + + K A+ N+ + + + F L G F +YN L A+ + Sbjct: 203 YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVK 262 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + A + + V GR E + + VD+AHT + +E +L +++ +IV Sbjct: 263 PNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLDSLKN---KNLIV 314 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443 VFG GGDRD+ KR +MGK+ A AI+T DNPRSED I EI+ G + Sbjct: 315 VFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPLMIE 374 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 NR AI A+E+ + D++++ GKG ET + G K D +++ Sbjct: 375 NRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419 >gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 508 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 201/457 (43%), Gaps = 24/457 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + + +DSR + G +F + G DGH +P A A GA A++V Sbjct: 28 GADDLTVRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDRPVE----- 82 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 ++ P L V + R L + L G ++ VTG++GK++ ++ V+ + + +G Sbjct: 83 ----TSLPQLCVPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSALVRGVLEAAG 138 Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + +G + +++ LTTP L + L + G VEASS LD R+D Sbjct: 139 TCTGVVGTLGAQVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMD 198 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ FT DH+D+H T + Y+ +K RLFE + DD + + + +A Sbjct: 199 GLAFEVAVFTGFEEDHLDHHGTVEQYWASKARLFEPGRTAAGVVVT--DDPWGRRLADQA 256 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 RV S + + A +V + + PL G V N A Sbjct: 257 AVRVTRVGSGADADVRVLGWRTGAAG--TEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWA 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379 +G+ + L + GR +G + R + VDYAHT +L + +R + Sbjct: 315 TGRVLGVPPDRIAAGLAAVAPPRGRNTVLGGSGRP-VVVVDYAHTPRALAAAVDTVRDLT 373 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR+ +V G G RD+ KR +G+ A AD +T++ EDP IRAE+ G+ Sbjct: 374 GPGGRVHLVVGARGRRDRYKRQGLGESA-RAADCVWLTNEGSHGEDPAAIRAELRLGLLG 432 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +R EAI A+ DV++V G+GHET Sbjct: 433 TPAAVRTVPDRREAITAAVRAAGPADVVLVVGRGHET 469 >gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] Length = 427 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 117/422 (27%), Positives = 193/422 (45%), Gaps = 33/422 (7%) Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 + + + + I+ V+ +K L + I+ +TGT+GK++ A+ + I Sbjct: 29 NAKFHARALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGKTTTAAAIYSIL 81 Query: 138 QRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G G + + LTT + + L + + +E SSH L Sbjct: 82 LDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALV 141 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R++G+ +A FTN+ +DH+D+H T + Y AK F + + + Sbjct: 142 QNRIEGLNFVAKIFTNITQDHLDFHGTFENYKKAKELFFTDESL-----------KFINK 190 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + G + ++ K ++ ++ + + F PL G F +YN Sbjct: 191 DALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNL 250 Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA+ I D + + + V GR E V + VD+AHT + +E +L Sbjct: 251 LVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLD 305 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ ++IVVFG GGDRD+ KRP+MGKI A IAI+T DNPRSE+P+ I EI+ Sbjct: 306 TLKN---KQLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILS 362 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G + +R EAI+ A+E+ D++V+ GKG ET + G K D ++ E Sbjct: 363 GFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNE 421 Query: 492 IL 493 IL Sbjct: 422 IL 423 >gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis DSM 7299] gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis DSM 7299] Length = 425 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 186/466 (39%), Gaps = 57/466 (12%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 + +S+ FV N FI A G + + Sbjct: 11 TDNSKEADKNSAFVYSKQN----EKFIEDAKKNGCK---------------------EFI 45 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++ ++ +TGT+GK++ A+ + + G G Sbjct: 46 KSEDL--------KNHCDFTSIKVIGITGTNGKTTTAAAIYSLLLDLGYKVALQGTRGFF 97 Query: 154 --SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ LTTP + + +E SSH ++Q R++G+ TN Sbjct: 98 INEQRVEEYSLTTPVQLGNFAHIQKAIENSCDFFVMEVSSHAIEQKRIEGLNFELKILTN 157 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + RDH+DYH+T + Y N K F + K + D +A L+ G Sbjct: 158 ITRDHLDYHKTIEEYINVKNSFFNDDSKK-----LINKDEI------KAKFNPKNCLTYG 206 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330 + + + + V + K F + G F VYN A Sbjct: 207 LDSPSTYKVQAYSFKDGMHVALQNFEKVESFTSMMMGLFNVYNLTAAIAAVHMTTNKSLN 266 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E +E V GR E T S I VD+AHT + ++ +L++ IIVVFG Sbjct: 267 EICEAVENFAGVSGRME---TLSLNPYIIVDFAHTPDGMKEVLQS---FGHKDIIVVFGA 320 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447 GGDRD+ KRPIMGK+A A IVT DNPR EDP+ I +I+ GI + NR Sbjct: 321 GGDRDKAKRPIMGKVADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKI 380 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI+ AI++ ++ V++V GKG E + + +K D ++I L Sbjct: 381 AIKKAIDLYSENSVILVLGKGDEEYQTIYD-QKLPFSDKEVINSYL 425 >gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia heliotrinireducens DSM 20476] gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia heliotrinireducens DSM 20476] Length = 493 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 189/492 (38%), Gaps = 19/492 (3%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ--AIAQGAEAIV 72 + + E + ++ DSR + G +FV G F PQ A A A Sbjct: 2 LADAGVQAQATGEATVQGMTIDSRKAEPGCLFVC------KGAAFKPQYLGGALDAGAAA 55 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + + A P +V D+ R+ ++L A+ ++ + I + +TGT GKS+ A Sbjct: 56 YLCDAAAEATLAQAYPQAPHIVTDDVRRAMALLAAVVFDRPDLKIDVVGITGTKGKSTTA 115 Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ I +G +G + ++ TTP L + L+ G + + +E Sbjct: 116 YMMRSILIAAGQEPSILGSIDTDDGVEHFESHNTTPEAPDLWRHLANTVEAGRSRMVMEV 175 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL R G++ G F N+GRDHI + + + + + + Sbjct: 176 SSHGLKYDRTLGVRFAIGCFLNIGRDHISPVEHP-TFEDYFESKLKLFAQSRTALVNLNS 234 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + + + VG + + T+ + + + Sbjct: 235 DMADQVLEAAKASEQLVTFGVGRDDADWNAADLAVEPQGIAFTVCTPTGERERIVLGMAG 294 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 +AA + + + + VPGR E V + VDYAH S Sbjct: 295 LFNVENALAAVVMSRMLGVTWDDIRAGLAHVRVPGRMEVVRSADGSVVALVDYAHNELSF 354 Query: 370 EMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +++ GR I VFG G++ Q +R + ++A AD I T+++P E E I Sbjct: 355 KTFFSSVKEEYPGRKVIAVFGAPGNKAQERRVTLPRVAAGFADHMIFTEEDPAYERVEDI 414 Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEM---LNKQDVLVVAGKGHETVHIVTNGEKKM 482 AE++ P +R A + A +M V+ + KG ET + ++ Sbjct: 415 CAEMMASTPAGASAEVICDREAACKRAFDMAFEAENGAVVALLAKGDETRQHRGDEFPEV 474 Query: 483 SVDCDIIREILG 494 D I REILG Sbjct: 475 KSDLAIAREILG 486 >gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter upsaliensis JV21] gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter upsaliensis JV21] Length = 428 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 199/466 (42%), Gaps = 61/466 (13%) Query: 31 NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S + F+ K F +A+ +GA+ Sbjct: 8 TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ V+ T+K L + I+ +TGT+GK++ A+ + I G G Sbjct: 43 --IIDVEETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGT 93 Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + LTT + + L + +G +E SSH L Q+R++G++ A Sbjct: 94 RGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEFAAK 153 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+D+H + + Y AK F + + + + Sbjct: 154 IFTNLTQDHLDFHGSFENYKKAKESFFTDESL-----------KFINKDAFHINFNVKNA 202 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326 + G + + K A+ N+ + + + F L G F +YN L A+ + Sbjct: 203 YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVK 262 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + A + + V GR E + + VD+AHT + +E +L +++ +IV Sbjct: 263 PNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLDSLKN---KNLIV 314 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443 VFG GGDRD+ KR +MGK+ A AI+T DNPRSED I EI+ G + Sbjct: 315 VFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPLMIE 374 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 NR AI A+E+ + D++++ GKG ET + G K D +++ Sbjct: 375 NRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419 >gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli IE4771] Length = 278 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 133/275 (48%), Positives = 178/275 (64%), Gaps = 1/275 (0%) Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H T +AY AKMRLF+ LLPK +PA+I+ADD +S + +K A +AG V +VG +G ++ L Sbjct: 1 HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTL 60 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K+V +KQ I + + F+ PL G+FQV NALVAAGL ++ G++ + + LEKL Sbjct: 61 KRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALEKL 120 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 GR E VG G YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKR Sbjct: 121 VGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKR 180 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 PIMG+IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR A+ ML Sbjct: 181 PIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAIAIREAVAMLTSG 240 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 D L+VAGKGHE + + D +R+ L Sbjct: 241 DTLIVAGKGHEEGQTIGS-VTLPFSDHAEVRKALE 274 >gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus SK58] gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus SK58] Length = 599 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 132/513 (25%), Positives = 204/513 (39%), Gaps = 54/513 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR ++ G ++VA+ G G F A+ GA ++ +A + ++ Sbjct: 69 VTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 127 Query: 90 TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L VD R A+R+YG ++ VTGT+GK++ + + + G S Sbjct: 128 APVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGI 187 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + LTTP L ++ + + V +E SSH + R+ G++ Sbjct: 188 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYA 247 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264 FTNL +DH+D H + Q YF AK LF+ + + + M RA A Sbjct: 248 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAP 307 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL-------- 316 L++G + ++ D L Sbjct: 308 VTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGLPG 367 Query: 317 ------VAAGLCIAIGIDSALVLE-----------HLEKLHVVPGRFEFVGTNSRGGRIY 359 A + + + L+ VPGR E VG Sbjct: 368 RFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGRE---PDAV 424 Query: 360 VDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VD+AH + + L+++ GR ++VFG GDRD+ KRP+MG IA AD+ I Sbjct: 425 VDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVI 484 Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTA----------IEMLNKQD 460 VTDD P SEDP IRA I+ G + R I +E+ QD Sbjct: 485 VTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRPVVIEEVADRAAAIRRAVELAGPQD 544 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AG+GHET +GE D +RE L Sbjct: 545 GILLAGRGHETTMDY-DGELVPLDDRVALREAL 576 >gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group] gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6 -diaminopimelate ligase [Oryza sativa Japonica Group] gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed [Oryza sativa Japonica Group] gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group] Length = 757 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 114/517 (22%), Positives = 232/517 (44%), Gaps = 42/517 (8%) Query: 10 DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+++ + P+ ++ + V D+ + AG ++V + G + G + +A + Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A+V ++ A +++VD+ L + + LY + +++ + V GT Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G ++ A V+ + + G+ + +G ++ + PI + + ++ + G Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +EA++ G+ +D I TN+ + T + Y N+ LF ++ Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298 E + D S V++ ++ K + K + +V + Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +YN L + + +A+G +++ +E++ +PGR E + + + Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+A T SL +L ++ + RI+ V GC G+R++GKRP+M K+A + +D+ ++T D Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTSD 637 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---------------GNR-------IEAIRTAIEML 456 NP +EDP I +++ G+ +E+ G+R A+R A+ M Sbjct: 638 NPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAMG 697 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + DV+V+ GKG++T I + +K+ D + RE L Sbjct: 698 EQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 733 >gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter acinonychis str. Sheeba] gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba] Length = 447 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ VTGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIIGVTGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYGDLEEAMRLECEYFIMEVSSHAIVQERIAGLNFALKILTNITSDHLDFHKSIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q ++ ++ +Q Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNVKEMALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETITPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 AHSKPL---VVVDFAHTTDGMQQVFESFKA---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGINDPSKVIVEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D +I++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEIVKNY 440 >gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix DSM 17093] gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix DSM 17093] Length = 504 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 148/511 (28%), Positives = 221/511 (43%), Gaps = 32/511 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW------IFVAIVGNKE 54 MKL LI + + E ++ + D+R + IFVA G Sbjct: 1 MKLAHLIRAALG---PDATWSHLPLPEVEVRRIVQDTRELTPSDPATEPFIFVARRGAAV 57 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 DGH F +A+AQGA A+V A + S R P + V + R L+ A+ LYG Sbjct: 58 DGHRFAARAVAQGAVAVVGE-ATPEEQASFAWRHAAPYIQVPDDRAALAQLAATLYGHPS 116 Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170 + VTGT GK++ A+ + + Q + G + TTP + Sbjct: 117 RALFTVGVTGTDGKTTTATLLHHLLQGDRPTGLLSTAGVRLGEAEGGLFGHFTTPEAPEV 176 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L+ ++G+ +E+SSHG Q RLD I G TNL +H+D+H T + Y AK Sbjct: 177 QRTLAAFVARGLRAAVIESSSHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTFENYRAAK 236 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +L A DD RA + +V + + Sbjct: 237 AQLMARARTSILNA----DDPNYAYFAARARRIITYGVVR---AATWRATEVRELPGALE 289 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ G+ + P+ G + VYNAL A G+ A L L VPGR + V Sbjct: 290 WRLTHAGRSYPARLPMVGSYNVYNALAALAAACEAGVPLAGALARLATFPGVPGRMQVVQ 349 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T + VD+AHT +LE L +R G++IVV G G+RD GKR +G A A Sbjct: 350 TA--PFALVVDFAHTPPALEKALAALRPQVRGKLIVVVGAAGERDPGKRAPLGAAAARGA 407 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVL 462 D+A+ T+++ RSEDPE I A++ G G F + +R AIR A+ + D++ Sbjct: 408 DLAVFTEEDARSEDPEAILAQLRAGAQGAGGRLGETFWLEPDRRAAIRRAVTLAEAGDLV 467 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHE + E + R L Sbjct: 468 LLAGKGHERTLERRD-ETLPWDEVAEARRAL 497 >gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter curvus 525.92] gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter curvus 525.92] Length = 432 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 199/473 (42%), Gaps = 62/473 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V+ +S + G FV + + F A+ +GA+ I + + + I Sbjct: 10 VTDNSNECERGCFFV-----QTHANSKFSQDAVKKGAKLIGLEECKKILNIDENI----- 59 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I+ +TGT+GK++ A+ + + + G G Sbjct: 60 ------------------------KIVGITGTNGKTTTAAAIYETLRELGHKCALSGTRG 95 Query: 152 TI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + LTT + + L S +G + +E SSH +DQ R++ +K F Sbjct: 96 AFIEGERIDEKALTTSAILQTLGYLKAASQRGCKYFIMEVSSHAIDQKRIESLKFALKIF 155 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH++ Q R+ +S +I DD K K A+ + + Sbjct: 156 TNLTQDHLDYHKSMQ----EYARVKSSFFEDDSLKLINIDDGGIKFNPKNAYTYSLKKPA 211 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGID 328 + + A I D PL GEF +YN + A + + + Sbjct: 212 SFAPVAYGLKGGIDA-------VIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPE 264 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 ++ + + + K V GR E V + + VD+AHT + +E +L +R + +IV+F Sbjct: 265 NSKLSKAISKFSGVDGRVEVVSSEPL---VIVDFAHTPDGIEKVLNALRHL---NLIVIF 318 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445 G GGDRD KRP MG IA A I IVT DNPRSE+PE I EI G+ +R Sbjct: 319 GAGGDRDNTKRPKMGAIAQRYAQICIVTSDNPRSEEPEAIIDEICAGMRMDESVSRISDR 378 Query: 446 IEAIRTA---IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +AI ++ L LV+ GKG E + G K D +++ + L L Sbjct: 379 KKAIELGLGRLKELGAGWALVILGKGDEEYQEIK-GVKHPFSDKEVVLKALAL 430 >gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC 35896] Length = 510 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 103/490 (21%), Positives = 208/490 (42%), Gaps = 42/490 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + + + +I+ ++ S ++ +FV I G K DGH ++ Sbjct: 1 MKLSKLLQNV------SVIEYKNVDMDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYL 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ A VV + + + P + V+++R L+ +S Y + + + Sbjct: 55 ASAVEHNAIVAVVETFQDI---------DIPQVKVEDSRIALATMSSNYYDNPSKKMTVI 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177 +T T+GK++ A V ++ +++ + IG S + + LTTP + L K ++ + Sbjct: 106 GITATNGKTTTAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QGVTH+++E SS L+ HR+ G+ F N+ RDHID H + + YF Sbjct: 166 VEQGVTHLTMEVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSFEDYFQ-IKSTLIRG 224 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVCAIHNKQ 289 + + A+I ADD+ ++++ N +G + + N Sbjct: 225 MKPSAKAVINADDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPT 284 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + T+S+ + +PG VYNA+ A LC+ ID + + L V RFE + Sbjct: 285 KSTLSLLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVERRFELI 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 I D+ + ++ + L+ ++ + ++ ++ G R + Sbjct: 345 YDKEFK--IIDDHFANTGNIRVTLETLKKMKYEQLHFIYAIRGSRGVVVNRENAEEICSG 402 Query: 410 ----------ADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEML 456 A ++ VT+ + +++ + +I++ + + EAI ++ + Sbjct: 403 IENLPLKTFVATKSVHHVTEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAFVLKEV 462 Query: 457 NKQDVLVVAG 466 DV+++AG Sbjct: 463 QPGDVILLAG 472 >gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitratiruptor sp. SB155-2] gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Nitratiruptor sp. SB155-2] Length = 430 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 24/385 (6%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKA 173 + VTGT+GK++ A+ + GL + G Q LTTP + Sbjct: 57 KTIGVTGTNGKTTTAAAIYSYLNDLGLKAALQGTRGFFIEDEQLEKKSLTTPPILQTLYH 116 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + QG T+ +E SSH + Q+R++ ++ FTN+ +DH+DYH+T Q Y K Sbjct: 117 MYTAKQQGATYFVMEVSSHAIAQNRIEDLQFALKVFTNISQDHLDYHKTMQNYIATKSSF 176 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + + K + + + ++ N + Sbjct: 177 -----------FMDEGSKLINKDDKHIQYNPKGARTYSVEELATYQILAFSMQNGISAVL 225 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + DF P+ G F +YN A + + + + E E V GR + + Sbjct: 226 RFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTEHFAGVKGRMQIL--- 282 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + I VD+AHT + ++ + ++ +++ +FG GGDRD+ KR +MG +A Sbjct: 283 NEEPLIIVDFAHTPDGMQKVFES---FPGKKLVAIFGAGGDRDRSKRALMGNVASRFCTK 339 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPRSEDP++I +I GI + +R EA+ A L K ++L++ GKG Sbjct: 340 IYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVDRKEAVEKAFHSLQKDEILLILGKGD 399 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E NG K D +++ +I+ Sbjct: 400 EEYIE-QNGTKIPYSDVEVVTDIIE 423 >gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 381 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%) Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 T+G ++V + + G + +G + TT S I++ LS + + Sbjct: 1 TNGTTTVTQLINLLSNLLGQKTATMGTLGNGFHDNLYPTKNTTSSSIFIHSFLSQVYKKK 60 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +++E SSHGL Q+R+ I FTNL +DH+DYHQ + Y AK LF + + Sbjct: 61 AKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK--HQV 118 Query: 242 SPAIIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 I+ A+D Y K+ +K+ N + Y K+++ + +N + Sbjct: 119 QKIILNANDKYGKKWLKKLFNYYTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNIHFES 178 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+F V N L++ + +G + ++ K+ + GR + N++ Sbjct: 179 SWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIFTKNNKP 238 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++L+ L IR I +FGCGG++D+ KR IMG IA +++ I+ Sbjct: 239 IF-IIDYAHTPDALQKTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSIAEKMSNQVII 297 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T+DNPR+E + I +I+ G NR +AI A ++V+AGKGHE Sbjct: 298 TNDNPRNEKEQNIIQDILSGCQKKNQIFVIPNRKKAISYAYFKARYNHIIVIAGKGHEEK 357 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 I+ N D + +L Sbjct: 358 QIIRNRSIVY-SDKKTVLNLLE 378 >gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactococcus lactis subsp. lactis KF147] gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactococcus lactis subsp. lactis KF147] Length = 483 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 102/499 (20%), Positives = 194/499 (38%), Gaps = 34/499 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+ + + +E +++S DSR +F A G ++ Sbjct: 9 EILKKDNNFREISSAGEYYFNWLKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 + A V Y + P ++V + ++ ++L A+ Y LA+ Sbjct: 67 -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114 Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F + I + +G + + T+ + LTTP + L + ++ Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G+ G F N+ DHI + +L Sbjct: 175 LTTGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + ++ + + + G + ++ Sbjct: 233 LKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFD 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F A A G + D L VVPGR E + T G Sbjct: 293 IRLLGRFNQENALATALATKALGASLENIHD-------GLALAVVPGRMELL-TAKNGAH 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 IY+DYAH SLE +++ + +G++++V G G++ + +R G++ + I+T Sbjct: 345 IYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDVILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK-QDVLVVAGKGHETVHI 474 D+ EDP+ I EI + ++ +R AI+ A+ D +++AGKG + + Sbjct: 405 TDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDMFQL 464 Query: 475 VTNGEKKMSVDCDIIREIL 493 + D ++ L Sbjct: 465 KDGKRQPYIGDAAAAQKYL 483 >gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 26695] gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695] Length = 447 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 184/429 (42%), Gaps = 20/429 (4%) Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSV 129 V+ + + + L+ + L + + I+ +TGT+GK++ Sbjct: 24 VLENPKEILFVKTPLNEKYSHLIAEKNLAILDFNELKNYF--DFKIKIVGITGTNGKTTT 81 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 AS + + + +G + ++ LTTP+ + L L + + Sbjct: 82 ASLMYSLLLDLNKKTALLGTRGFFINNERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIM 141 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH + Q R+ G+ TN+ DH+D+HQ+ + Y +AK + I Sbjct: 142 EVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAK---NSFFKDEGLKVINR 198 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + + A + + Q ++ ++ +Q + + PL Sbjct: 199 DETNALFNPVNAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNFKEIALMHSPLL 258 Query: 308 GEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G + +YN L + + ++ LE + V GR E V + + VD+AHT Sbjct: 259 GRYNLYNILAGVLGVKLLTQLPLETIVPLLENFYGVKGRLEIVHSKPL---VVVDFAHTI 315 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + ++ + ++ + +I +FG GGDRD+ KRP MG IA A I+T DNPRSE+ E Sbjct: 316 DGMQQVFESFKN---QKITALFGAGGDRDKTKRPEMGAIASYYAHKIILTSDNPRSENEE 372 Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ GI I + +R +AI A+E L +VL++ GKG E + I + + Sbjct: 373 DIIKDILKGINDSSKVIVEKDRKKAILNALENLKDDEVLLILGKGDENIQIFKD-KTIFF 431 Query: 484 VDCDIIREI 492 D ++++ Sbjct: 432 SDQEVVKSY 440 >gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51] Length = 447 Score = 200 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 NFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHESIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + ++ LE + V GR E Sbjct: 241 DLRNPNFKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL+V Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLVL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus EPS] gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus EPS] Length = 517 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 135/501 (26%), Positives = 213/501 (42%), Gaps = 51/501 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR + AG F+A G DG + A+AQGA A +V + + I Sbjct: 22 LHADSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVD---AFGFGEDDRI 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ--------------- 135 + AS Y ++LAVTGT+GK+S A ++ + Sbjct: 79 ASYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRAMR 138 Query: 136 ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + + +G + LTTP P+ + L L +G ++EAS Sbjct: 139 PDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTTPDPVMMQGELRALVERGFGACAIEAS 198 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---IY 247 S G+ + RLDG ++ FTN +DH+DYH + AY+ AK LF + + ++ Sbjct: 199 SIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAELFRWPGLRAAVINIDDMH 258 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306 + V +S G + + + + Q +++ +G Sbjct: 259 GASLCANLVDAGIGALDVWTVSAGGKPARLVARDIGYDAQGLQFSVTEQGSVSVERLSTG 318 Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G++ V N L G A+G+ + + L VPGR E V VDYAHT Sbjct: 319 LIGQYNVANLLGVLGTLRALGLSLSRAVAACANLTSVPGRMERVSVGGNAPLAVVDYAHT 378 Query: 366 SNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++L+ L +R + R + +FGCGGDRD KRP+M +A AD IVT DNPRS Sbjct: 379 PDALDKALAGLRPLAQQRGGALWCLFGCGGDRDPIKRPMMAAVAERQADHVIVTSDNPRS 438 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDVLVVAGKGHETV 472 E P+ I ++++ G +R +A + AI QDV+++AGKGHE Sbjct: 439 EKPDAIISQVLRGF-------SRSDAAQVQPDRAAAIADAIAQAAPQDVVLIAGKGHEAW 491 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + G++ D + L Sbjct: 492 QEIA-GQRLPFSDKTHALDAL 511 >gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter suis HS1] gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter suis HS1] Length = 446 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 106/475 (22%), Positives = 189/475 (39%), Gaps = 57/475 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +S D+R + + +V + + + ++ + Sbjct: 13 FTHLSDDTRELDQDTL--------------------------LVQTPTNTRFVQQYLQEH 46 Query: 90 -TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + +K+ I+ +TGT+GK++ AS + + G S +G Sbjct: 47 RVPCIHAKELKKYF---------NTDVRIIGITGTNGKTTTASLIYSLLLDLGYSCALLG 97 Query: 149 PTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + LTTPS + + + +++G + +E SSH ++Q R+ G+ A Sbjct: 98 TRGFFFNDSCLKQKGLTTPSLLEVYANIEQATNRGAHYFVMEVSSHAINQERILGLDFSA 157 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+ DH+DYH + Y K E L + + H Sbjct: 158 KVITNITSDHLDYHGNLEEYRRVKNAFLSDESLKIINRDDAFVRFNPKNAYGYAIEHKTH 217 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-I 323 V + QG H+ Q ++ PL G +YN L + Sbjct: 218 LSVNAYSLQGLSAHICFTEKPGRYQNSEF----EEGLLYSPLVGRHNLYNLLAGILCVKL 273 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + + + V GR E V + VD+AHT++ E I + + + + Sbjct: 274 LTKKSLKTLCDLIPHFLGVKGRMEVVHEQPL---VIVDFAHTADGFEQIFNSFK---TRK 327 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PG 438 I +FG GG+RD+ KRP+MG IA A +T DNPR E+P I +I+ GI Sbjct: 328 IKALFGAGGNRDKSKRPLMGAIACKYASKVYITSDNPRYEEPMAIMQDILVGIAVEKRDK 387 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I + +R +AI A++ L ++L++ GKG E+V I+ + + D ++++ Sbjct: 388 VILEIDRYKAICLALQELKSDEILLILGKGDESVQIIGD-KTIPFDDTEVVKTYF 441 >gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis str. Sterne] gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 401 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 111/411 (27%), Positives = 179/411 (43%), Gaps = 34/411 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + KI + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222 Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF + A++ ADD + K G + K + Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +S + + L G F VYNAL A + + GI + + L L + GR E Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRME 340 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 + ++ + VDYAHT ++LE +L IR G+II VFGCGGDRD K Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKK 390 >gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Variovorax paradoxus S110] gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus S110] Length = 520 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 136/505 (26%), Positives = 212/505 (41%), Gaps = 54/505 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR + AG F+A G DG + A+AQGA A +V + + + I Sbjct: 22 LHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAE---AFGFDGDERI 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI-------------- 136 + AS Y +LAVTGT+GK+S A ++ + Sbjct: 79 ASYPGLKAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWWLAESLSTLAVPGGVRAPR 138 Query: 137 -----CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + +G + LTTP P+ + + L L +G ++EAS Sbjct: 139 LDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRELRALVERGFGACAIEAS 198 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---Y 247 S G+ + RLD ++ FTN +DH+DYH + AY+ AK LF + + I + Sbjct: 199 SIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRAAVINIDDVH 258 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306 + + +S + + V + +++ D Sbjct: 259 GASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGLRFSVAEHDNDAVERMSTG 318 Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDY 362 G++ V N L G A+G+ A + +L VPGR E VG VDY Sbjct: 319 LIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRMERVGAADANAAAPLAVVDY 378 Query: 363 AHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 AHT ++L+ L +R + R + VFGCGGDRD KRP+M +A AD +VT DN Sbjct: 379 AHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRPMMAAVAERQADRVVVTSDN 438 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDVLVVAGKGH 469 PRSE+P+ I ++++ G+ R EA + AI QDV+++AGKGH Sbjct: 439 PRSENPDAIISQVLLGLA-------RPEAAQVQPDRAAAIADAIAQAAPQDVVLLAGKGH 491 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E + G++ D + L Sbjct: 492 EAWQEIA-GQRIPFSDRIHALDALS 515 >gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Gambia94/24] Length = 447 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 166/386 (43%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIAQKRIAGLDFALKILTNITSDHLDFHKSLENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +++ L G+ + + + LE + V GR E V Sbjct: 242 LRDPNLKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E I + + D +++++ Sbjct: 416 KGDENTQIFKD-KTIFFSDQEVVKDY 440 >gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori SouthAfrica7] Length = 447 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIIGITGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLECEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHKSLENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +V+ L G+ + + + LE + V GR E V Sbjct: 242 LRDPNVKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VD+AHT++ ++ + ++ ++ +I +FG GGDRD+ KRP MG IA Sbjct: 302 HPKPL---VVVDFAHTTDGMQQVFESFKS---QKITALFGAGGDRDKTKRPKMGAIASYY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHKIILTSDNPRSENEEDIIKDILKGINDLSKVITEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E + I + + D +++++ Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440 >gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter felis ATCC 49179] gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter felis ATCC 49179] Length = 442 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 110/430 (25%), Positives = 179/430 (41%), Gaps = 33/430 (7%) Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + I +TP + + +L I+ +TGT+GK++ A+ + + Sbjct: 30 VKTPTNARFIPPHTPYIEASELKHYL---------NVNIPIIGITGTNGKTTTAALIAHL 80 Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 Q G S +G AQ LTTPS + L ++ ++G +E SSH + Sbjct: 81 LQALGHSCALLGTRGFFIHNAQVKPKGLTTPSLLELYSDIARARAEGAKFFVMEVSSHAI 140 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 Q R+ G++ A TN+ DH+DYH + + + L E I+ DD + + Sbjct: 141 AQERILGLEFAAKVHTNITSDHLDYHGDIE----TYRAIKNQFLSDEGLKIVNLDDPHVR 196 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGE 309 A+ C + + ++ A + + + PL G Sbjct: 197 FNPTNAYGYACERKTHLSVNAYSLQPEISAHVEFHADPRARRDPNSNAEMGIVHAPLMGL 256 Query: 310 FQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 ++N L A A + L V GR E V + VD+AHT++ Sbjct: 257 HNLHNLLGALLCVRALTKQPLESLCSLLGDFPGVEGRMEVVHQ---NPLVVVDFAHTADG 313 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 I + + +I VVFG GGDRD+ KRP+MG++A A + +T DNPRSE+P I Sbjct: 314 FVQIFNSFKA---QKIKVVFGAGGDRDKSKRPLMGQVASTHALKSYITSDNPRSEEPLAI 370 Query: 429 RAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I+ GI + + +R AI A+ L +VL++ GKG E V I+ Sbjct: 371 IEDILSGIASELRTRVVVEPDRKRAIELALSELQSDEVLLILGKGDECVQIIGQAH-LPF 429 Query: 484 VDCDIIREIL 493 D ++R Sbjct: 430 DDRALVRNFF 439 >gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 437 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 113/379 (29%), Positives = 175/379 (46%), Gaps = 24/379 (6%) Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQG 181 +GK++ A+ + + G G + +D LTTP + K L +G Sbjct: 73 NGKTTTAAAIYSLLLDLGQKVGLQGTRGCFINEKRVEDKSLTTPPILQTIKNLKMAVDEG 132 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E SSH + Q+R+DG+ TN+ +DH+D+H+T Y K R FE+ K Sbjct: 133 CEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHLDFHKTIDEYIAVKSRFFEDESLK- 191 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + G + + ++ I+ + K +D Sbjct: 192 ----LINSDERHIRF------NRINAFTYGIEHPATYKVLAYSLKEGISAAIAKKEKVYD 241 Query: 302 FLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L G F +YN L A + + + E + V GR + V S+ + V Sbjct: 242 FESSLHGFFNLYNLLAAISAVDLLHVAGMEEICEAVSHFGGVEGRMQVV---SQDPLVIV 298 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT + +E +L++++ IVVFG GGDRD+ KRP MG +A A IVT DNP Sbjct: 299 DFAHTPDGMEKVLESMKD---KNCIVVFGAGGDRDRTKRPKMGAVAERYAKWMIVTSDNP 355 Query: 421 RSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE+P+ I EI+ GI K +R +AI A+ M K DV+++ GKG ET V Sbjct: 356 RSENPDAIIEEIVAGIQRTESLHVKVDRYQAIEEALGMQKKSDVVLILGKGDETYQEVA- 414 Query: 478 GEKKMSVDCDIIREILGLI 496 G K D +++ EIL + Sbjct: 415 GVKYPFDDRNVVLEILARL 433 >gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein [Carboxydibrachium pacificum DSM 12653] Length = 260 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 137/258 (53%), Gaps = 8/258 (3%) Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A + D +M + + + K++ + + + ++ K Sbjct: 2 MAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQDKK 60 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG F VYNAL A + +GI V E L + V GRFE V T ++ Sbjct: 61 EEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFYVF 118 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAHT + + I++ ++ +GR I+VFG GGDRD+ KRP+MG++A AD I+T DN Sbjct: 119 IDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDN 178 Query: 420 PRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PRSE+P++I A+I GI ++ +R EAIR A+ K DV+++AGKGHET I+ Sbjct: 179 PRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII 238 Query: 476 TNGEKKMSVDCDIIREIL 493 + + + +I++EIL Sbjct: 239 GD-KVIPFDEREIVKEIL 255 >gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pylori 83] Length = 447 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYNDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG+IA Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Shi470] gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Shi470] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 VHSKPL---VIVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++I+ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVIKSY 440 >gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 52] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPFISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128] gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Helicobacter pylori B8] gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128] gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Helicobacter pylori B8] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 173/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHESIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG +A Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPEMGAVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI +A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISNSSKVVVEKDRKKAILSALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27] gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 165/386 (42%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ VTGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGVTGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +A Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPSISASLCYQQD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +++ L G+ + + ++ LE + V GR E V Sbjct: 242 LRDPNLKEVALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEVV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E I + + D ++++ Sbjct: 416 KGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori v225d] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG+IA Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEYIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D +++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440 >gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori B38] gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori B38] Length = 447 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 167/386 (43%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDTQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPFISASLCYQQD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +++ L G+ + + + LE + V GR E V Sbjct: 242 LRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E + I + + D +I+R+ Sbjct: 416 KGDENIQIFKD-KTIFFSDQEIVRDY 440 >gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. lactis Il1403] gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactococcus lactis subsp. lactis CV56] Length = 483 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 102/499 (20%), Positives = 194/499 (38%), Gaps = 34/499 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+ + + +E +++S DSR +F A G ++ Sbjct: 9 EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 + A V Y + P ++V + ++ ++L A+ Y LA+ Sbjct: 67 -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114 Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F + I + +G + + T+ + LTTP + L + ++ Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ G+ G F N+ DHI + +L Sbjct: 175 LTNGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + ++ + + + G + ++ Sbjct: 233 LKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFD 292 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F A A G + D L VVPGR E + T G Sbjct: 293 IRLLGRFNQENALATALATKALGASLENIHD-------GLALAVVPGRMELL-TAKNGAH 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 IY+DYAH SLE +++ + +G++++V G G++ + +R G++ + I+T Sbjct: 345 IYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDVILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK-QDVLVVAGKGHETVHI 474 D+ EDP+ I EI + ++ +R AI+ A+ D +++AGKG + + Sbjct: 405 TDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDMFQL 464 Query: 475 VTNGEKKMSVDCDIIREIL 493 + D ++ L Sbjct: 465 KDGKRQPYIGDTAAAQKYL 483 >gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F57] Length = 447 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG+IA Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10] gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10] Length = 447 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + A + + Q ++ ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPTNAHTYALDKKAHLNIQAFSLNPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILDALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPKX_438_AG0C1] Length = 447 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 173/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGINDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D +++R+ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVRDY 440 >gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 35A] Length = 447 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori J99] gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99] Length = 447 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFIDDKHIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +A Sbjct: 124 LYSDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +++ L G+ + + + LE + V GR E V Sbjct: 242 LRDPNLKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E + I + + D +++++ Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440 >gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPAG1] gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1] Length = 447 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 173/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + ++ LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 VHSKPL---VIVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ Sbjct: 355 YAHQIVLTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D +++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440 >gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F16] Length = 447 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTAFLGTRGFFINDKQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG+IA Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Sat464] Length = 447 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPDLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E+ I + + D ++++ Sbjct: 415 GKGDESTQIFKD-KTIFFSDQEVVKSY 440 >gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Cuz20] Length = 447 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E+ I + + D ++++ Sbjct: 415 GKGDESTQIFKD-KTIFFSDQEVVKSY 440 >gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori India7] Length = 447 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 164/386 (42%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R G+ TN+ DH+D+HQ + Y +A Sbjct: 124 LYGDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILTNITSDHLDFHQNIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ + + + + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNVLFNPINAHTYALDKKAHLNVQAFSLNPFISASLCYQQD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++++ L G+ + + ++ LE + V GR E V Sbjct: 242 LRDLNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGISNSSKVIIEKDRKKAILNALENLKDDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E + I + + D ++++ Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKSY 440 >gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori P12] gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12] Length = 447 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +A Sbjct: 124 LYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFRDDGLKVINRDETNALFNPINVHTYALDKKAHLNVQAFSLTPFISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + ++ LE + V GR E Sbjct: 241 DLRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVIIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E++ I + + D ++++ Sbjct: 415 GKGDESIQIFKD-KTIFFSDQEVVKSY 440 >gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 518 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 119/524 (22%), Positives = 203/524 (38%), Gaps = 52/524 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 L+ L+ PEL + + + + I+ ++ +S+ + G IFVA G K D H + Sbjct: 13 LKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAHDY 72 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I +AIA GA +++ A + S P V N RK L+ AS Y ++ Sbjct: 73 IEEAIANGASTVILERADYIDKVK---DSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIV 129 Query: 120 VTGTSGKSSVASF--VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 T + + I + G+ S IG + I+ D++LTTP L + Sbjct: 130 TGITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEK 189 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + V +++ E SSHGL Q R+ I TN+ DH+D+H + YF +K + F+ Sbjct: 190 MVQKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQM 249 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L P + D + M + + G I + V + T ++ Sbjct: 250 LSPDSISVL--NADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTYQIK 307 Query: 297 GK------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + +PG+ +YN L+A +CI G D V++ E+ + Sbjct: 308 EELPTVTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQFPGLFR 367 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + N I D AH S+ + + I + R+++VF G R + Sbjct: 368 RLEVIYKN--SFTIIDDCAHNPASIRSVFETISQLPFNRLVIVFAIRGSRGDQINLENSQ 425 Query: 405 IALDLADI------AIVTDDNPR--------SEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 + + I T + SE + G P F N E I Sbjct: 426 RLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTP-FKFIHNLEETIE 484 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 TA+ + + D+L++ G + G +I+R L Sbjct: 485 TALNEVKQGDLLMILG----PY-AINEG-------QEIVRNYLS 516 >gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori PeCan4] gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori PeCan4] Length = 447 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALEEIASLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E + I + + D +++++ Sbjct: 415 GKGDENIQIFKD-KTIFFSDQEVVKDY 440 >gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F30] Length = 447 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q + ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALETIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + + VD+AHT + ++ + ++ + +I +FG GGDRD+ KRP MG++A Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Lithuania75] Length = 447 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y + Sbjct: 124 LYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRD- 182 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 + I + + A + + Q ++ ++ +Q Sbjct: 183 --IKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPFISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 VHSQPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A ++T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGINNSSKVVVEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D +++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440 >gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor] gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor] Length = 761 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 112/517 (21%), Positives = 221/517 (42%), Gaps = 42/517 (8%) Query: 10 DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+++ + P+ ++ + V D+ + AG +FV + G DG + +A + Sbjct: 230 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKR 286 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A+V +++ A +++VD+ L + + LY + ++ + VTGT Sbjct: 287 GAVAVVADQDLNIEGTLACRA----LVIVDDILAALRVLPACLYRRPSTDMAVIGVTGTD 342 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G ++ V+ + + G+ + +G S+ + PI K ++ + G Sbjct: 343 GVTTTTHLVKAMYEAMGVRTGLVGVLGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNG 402 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +E ++ G+ + I TN+ + T + Y ++ LF ++ Sbjct: 403 TEAVVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQYMSSMASLFSRMVDP 462 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298 + + D V++ ++ K + K + +V + Sbjct: 463 DRHRKVVNIDDPCAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 522 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +YN L + IA+G ++ +E++ +PGR E + + + Sbjct: 523 ILEISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELI-DEEQAFGV 581 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+A T +L +L +R + RI+ V GC G++++GKRP+M KIA D +D+ ++T D Sbjct: 582 IVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSD 641 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEML 456 NP +EDP I +++ G+ +E+ + A A+ M Sbjct: 642 NPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMG 701 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + DV+V+ GKG++T I + + D + RE L Sbjct: 702 EQGDVVVITGKGNDTYQIEGDKSE-FFDDREECREAL 737 >gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 908] gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 2018] gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pylori 2017] Length = 447 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 166/386 (43%), Gaps = 14/386 (3%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +A Sbjct: 124 LYGDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKVLTNITSDHLDFHQNIENYRDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F++ +A + R + + + + Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQD 241 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +V+ L G+ + + + LE + V GR E V Sbjct: 242 LRDPNVKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VD+AHT++ ++ + +N + +I +FG GGDRD+ KRP MG IA Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFENFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ G Sbjct: 356 AYKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENLKGDEVLLILG 415 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492 KG E + I + + D +++++ Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440 >gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Dietzia cinnamea P4] gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Dietzia cinnamea P4] Length = 521 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 131/491 (26%), Positives = 209/491 (42%), Gaps = 40/491 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 DL L+ + + +++ DSR + G ++A+ G+ G F + Sbjct: 11 DLSRLLGTPLVGGSRATARAVADLVVVDITDDSRSVSTGHAYLALPGSHHHGLDFEGR-- 68 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 + A + S + P LVV + R ++ +G + VTG Sbjct: 69 --------AAEAGAAVAISDRASATLPTLVVGDPRAVSGPLSAWFHGCPSNAMRVFGVTG 120 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQG 181 T+GK+S A ++ +G SS I + + TTP L + L + G Sbjct: 121 TNGKTSTAHLLEAGLAAAGESSGLISGAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGG 180 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 T ++E SSH +DQ R+DG++ +FTNLG DH+DYH T + ++ K LF Sbjct: 181 ATACAMEVSSHAIDQGRVDGVRFRTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAARADT 240 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + + SV G ++ + V + T Sbjct: 241 AVVS---VDDHHGRRLAAESEPPTWTCSVRDVGADVYAEDVVCDGTGSRFTARTPYGAVP 297 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G QV NALVA +A GID E L +L VPGR E V + VD Sbjct: 298 VRLRVLGPHQVPNALVALTCLLADGIDPLAAAEGLSRLSRVPGRCEPV-NAGQSFTALVD 356 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y H +L ++R++ +GR+I+V G G RD+ KR +G+ A AD+ IVTD++P Sbjct: 357 YMHNEPGQRALLPHLRSMATGRLILVIGATGGRDRTKRRPLGRTAASFADLVIVTDESPE 416 Query: 422 SEDPEKIRAEII----------------------HGIPGFIEKGNRIEAIRTAIEMLNKQ 459 EDP +RA+++ G+ +E+ +R A+ A+ + Sbjct: 417 DEDPAAVRADVLAGAREAAGARAGGAAGVRARETAGVE-VVEEPDRGRALALAVAVAGPG 475 Query: 460 DVLVVAGKGHE 470 DV+VVAG+G E Sbjct: 476 DVVVVAGRGSE 486 >gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays] gi|194704536|gb|ACF86352.1| unknown [Zea mays] Length = 540 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 114/517 (22%), Positives = 222/517 (42%), Gaps = 42/517 (8%) Query: 10 DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+++ + P+ ++ + V D+ + AG +FV + G DG + +A + Sbjct: 9 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKR 65 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A+V +++ A +++VD+ L + + LY + N+ + VTGT Sbjct: 66 GAVAVVADQDLNIEGTLACRA----LVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTD 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G ++ V+ + + G+ + +G T S+ + PI K ++ + G Sbjct: 122 GVTTTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNG 181 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +E + G+ +D I TN+ + T + Y + LF ++ Sbjct: 182 TEAVVLEKGTDGMPPSGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDP 241 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGK 298 E + D S V++ ++ K + + + + + Sbjct: 242 ERHRKVVNIDDPSAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 301 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +Y+ L + IA+G ++ +E++ +PGR E + + + Sbjct: 302 ILEISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELI-DEEQAFGV 360 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+A T +L +L +R + RI+ V GC G++++GKRP+M KIA D +D+ ++T D Sbjct: 361 IVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSD 420 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEML 456 NP +EDP I +++ G+ +E+ + A A+ M Sbjct: 421 NPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMG 480 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + DV+V+ GKG++T I + + + D + RE L Sbjct: 481 EQGDVVVITGKGNDTYQIEGD-KNEFFDDREECREAL 516 >gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F32] Length = 447 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 174/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +A Sbjct: 124 LYGDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYKDA 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q ++ ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLNPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + ++ LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG +A Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAMASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E I + + D ++++ Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440 >gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Sulfuricurvum kujiense DSM 16994] gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfuricurvum kujiense DSM 16994] Length = 431 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 26/385 (6%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKA 173 ++ +TGT+GK++ AS + + G + G + A LTTP+ + + Sbjct: 63 RVIGITGTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTPTVLNTYRH 122 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 ++ + G + +E SSH ++Q R+ GI TN+ +DH+DYH++ + Y Sbjct: 123 MAQAIASGCEYFVMEVSSHAIEQERIAGITFALKILTNITQDHLDYHESIEEY------- 175 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ + +A + G + + +++N + Sbjct: 176 ----TRIKNLFFQDESKKLINKDEGKAEFNFKNAFTYGVENPATYKIIAYSLNNGVSGVL 231 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352 F+ L G F +YN A + + +E V GR E V + Sbjct: 232 KYFEDHVPFVSSLHGFFNLYNITAAMAAVHLVTDESLEKIADVVENFGGVSGRMEVVSES 291 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VD+AHT + +E +L ++ ++VVFG GGDRD+ KRP+MGK+A+ A Sbjct: 292 PL---VIVDFAHTPDGMEQVLNALKE---KEVLVVFGAGGDRDRKKRPLMGKVAVAYAKK 345 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 VT DNPR EDP+ I +I+ GI + NR AI A++ D V+++ GKG Sbjct: 346 VYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKE-RSGDEVVLILGKG 404 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 ET I+ + D + +E+L Sbjct: 405 DETSQIIYDQH-LPFDDRVVAKELL 428 >gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis RM3268] gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis RM3268] Length = 436 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 130/469 (27%), Positives = 204/469 (43%), Gaps = 61/469 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-VVSSAYSLQDFSATIRSNTP 91 ++ +S +AG F + + F P+A +GA+ I +V + L+ Sbjct: 10 ITDNSAECEAGCFF--MRTSAN--AKFEPEAAQKGAQIISIVQAKELLKI---------- 55 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++R I+ +TGT+GK++ A+ + G S G Sbjct: 56 -----DSR---------------IKIVGITGTNGKTTTAAAIYSTLLDLGFSCGLSGTRG 95 Query: 152 TISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + LTT S L QG + +E SSH + Q+R++G++ F Sbjct: 96 AFINERRIDEKGLTTSSVFKTMSYLYEAGKQGCEYFVMEVSSHAIAQNRIEGLEFALKIF 155 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKRAHNAGCRV 267 TNL +DH+DYH + Q Y K F + PK A D + + A V Sbjct: 156 TNLSQDHLDYHGSMQEYAAVKSSFFADDAPKLINADDGHIKFDPANALTYGIKNAASFGV 215 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326 G +G L + + G + L GEF +YN A I Sbjct: 216 SGYGLKGGIDALVR------------TPNGDNAQLQSDLIGEFNLYNLTAAFAAVKILTK 263 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + + + L V GR + V ++ + VD+AHT + +E +L +R SG II Sbjct: 264 LPNEKIAKALANFGGVEGRVQIV---NKDPLVIVDFAHTPDGIEKVLNALRA--SGEIIA 318 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443 VFG GGDRD GKRP MG IA A I IVT DNPRSE+P++I +I G+ ++ Sbjct: 319 VFGAGGDRDHGKRPKMGAIAEHFAKICIVTSDNPRSENPDEIIEQICAGMRRKDKILKIT 378 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R EAI A+++ +++ + GKG ET + G K D ++ E+ Sbjct: 379 DRKEAIARALDLAKNGEMIAILGKGDETYQEIK-GVKHPFSDKQVVSEL 426 >gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Helicobacter pylori SJM180] gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Helicobacter pylori SJM180] Length = 447 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 173/387 (44%), Gaps = 16/387 (4%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 I+ +TGT+GK++ AS + + + +G + ++ LTTP+ + Sbjct: 64 DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y + Sbjct: 124 LYGDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILTNITSDHLDFHQNIENYRDT 183 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K + I + + A + + Q ++ ++ +Q Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINTHTYALDKRAHLNVQAFSLNPSISASLCYQQ 240 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348 + + PL G + +YN L + + + LE + V GR E Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A I+T DNPRSE+ E I +I+ GI I + +R +AI A+E L +VL++ Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEKDRKKAILNALENLKDDEVLLIL 414 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 GKG E + I + + D +++++ Sbjct: 415 GKGDENIQIFKD-KTIFFSDQEVVKDY 440 >gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sanguibacter keddieii DSM 10542] gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sanguibacter keddieii DSM 10542] Length = 535 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 218/488 (44%), Gaps = 29/488 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSAT 85 ++ V S +Q G +FVA+ G + G F A+A GA A++ + D Sbjct: 38 VSGVVLGSADVQPGDLFVAVPGARSHGARFTAAAVAAGAVAVLTDTEGLALLESTDEGLA 97 Query: 86 IRSNTPILVVD---NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 + TP++++ + ++ AS Y VTGT+GK++ + + Sbjct: 98 LVHGTPVVLLPQGSDPQRAAGSAASWFYDHPSAALTSFGVTGTNGKTTTTYLLDHLLTAL 157 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + +G T + +RLTTP L L+ + GV +++E SSH + Q R+ Sbjct: 158 GRTVGLVGTVETRSGARVLPSRLTTPDAATLQGVLATMREDGVDVLAMEVSSHSISQRRI 217 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG+ FTNL +DH+D+H YF AK LF + ++ + Sbjct: 218 DGLHFDVAGFTNLSQDHLDFHGDLDRYFAAKAELFTAERARRGVVVVDDEWGRRLAATAD 277 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318 V G ++ V A + ++ LPG F V NA +A Sbjct: 278 IPTVTLSVEHSGGPQSDWTVRDVHAGASGSTFSVVHRDGRSVRARTALPGSFNVANAALA 337 Query: 319 AGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 + + GI+ A + VPGR E V + R+ VD+AH ++L + L Sbjct: 338 IVMVVESGIEVGTVTAALEAAGGLSPAVPGRMEQVSDS---PRVVVDFAHNPDALALALA 394 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R T+GR++VVFG G+RD KRP+MG+IA++ AD+ +VTDD+P E + IRAE++ Sbjct: 395 ALRPTTAGRLVVVFGATGERDTTKRPVMGRIAVEGADVVVVTDDDPHGEAADGIRAEVLA 454 Query: 435 GIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 G +E R AIR A+ + +D ++VAG+GHE + +G Sbjct: 455 GAREAAAQPGCDVDVLEAAPRALAIRAAVLAADDEDTVLVAGRGHEVWQEI-DGVDHPLD 513 Query: 485 DCDIIREI 492 D R Sbjct: 514 DRVEARAA 521 >gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium glutamicum] Length = 555 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 132/490 (26%), Positives = 195/490 (39%), Gaps = 23/490 (4%) Query: 19 SIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + E+ I + DS + + IF A+ G + G F A A AI+ +A Sbjct: 59 GVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAAG 118 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 + PI+VVD+ R L +S +YG ++ + VTGTSGK++ + +++ Sbjct: 119 --LEVLNEAGETRPIIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEK 176 Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 +G IG T T +LTTP L + + GVTHV +E SSH L Sbjct: 177 GLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHAL 236 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYS 253 R+ G +FTNL +DH+D+H T YF+AK F P ++ DD++ Sbjct: 237 SLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWG 296 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + A + V + + + + LPG F V Sbjct: 297 QRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVA 356 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA + A VPGR E + + VDYAH ++ +L Sbjct: 357 NATL--AFAAAAPWVLMATFARGMSKVAVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVL 413 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +RT GR+ + C RD KR MG + + TD N IRA + Sbjct: 414 DTLRTQIDGRLGSGYRCWWRRDSTKRGPMGS-CPHRSGSSYCTDANLVR-VAGTIRAAVT 471 Query: 434 HGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 G +E G+R EAIR +E D +VVAGKGHE +V G Sbjct: 472 AGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLVA-GVTHHF 530 Query: 484 VDCDIIREIL 493 D + R L Sbjct: 531 DDREEGRAAL 540 >gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris SK11] gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp. cremoris SK11] Length = 483 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 107/499 (21%), Positives = 203/499 (40%), Gaps = 34/499 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+ + + +E +++S DSR +F A G ++ Sbjct: 9 EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 + A V Y + P ++V + ++ ++L A+ Y LA+ Sbjct: 67 -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFYKFPQNKLKTLAL 114 Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F + I + +G + + T+ + LTTP + L + ++ Sbjct: 115 TGTKGKTTSAYFAKSILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G F N+ DHI + +L Sbjct: 175 LENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + A+ + + + + G + ++ ++ Sbjct: 233 LKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHF------VTDGS 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F L G F NAL A A+G + + L V PGR E + T G Sbjct: 287 VSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAIV-PGRMELL-TAKNGAH 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 IY+DYAH SLE +++ + +G++ +V G G++ + +R G++ + + I+T Sbjct: 345 IYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNVILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+ E+P+ I EI + ++ +R AI+ AI D +++AGKG + + Sbjct: 405 TDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGADMFQL 464 Query: 475 VTNGEKKMSVDCDIIREIL 493 + D ++ L Sbjct: 465 KDGKREPYIGDSPAAQKYL 483 >gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bryantella formatexigens DSM 14469] gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bryantella formatexigens DSM 14469] Length = 500 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 109/512 (21%), Positives = 206/512 (40%), Gaps = 40/512 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 + D ++ + + + + + V+ DSR + G +F+ G F+P+ Sbjct: 2 ITTHDVERILREQGLLCRADKNEEAAPVTWVTCDSREVIPGTLFIC------KGAEFLPE 55 Query: 63 ----AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 A+A G A + VV + R+ +++ ++ + PE Sbjct: 56 YLLEAVAYGCIAYMSEE-------RWGTPKTVRGFVVKDIRRAMAVVSAAFFEYEPEALK 108 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT------STISSFAQDNRLTTPSPIYL 170 + +TGT GK++ A +++ + + + + D +TTP L Sbjct: 109 LTGITGTKGKTTTAWYLRAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVL 168 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + ++ + + G ++++E SS L HR+DG+ G F N+ DHI + + F Sbjct: 169 YELIARVRAAGSEYMTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRD--FEDY 226 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + LL + A + D Y+++++K A A V + + + + KQ Sbjct: 227 FQSKLSLLRQCGTACVNLDSDYAQQILKEARKAQRVVTFGQHHEAQLRYRILPEKDGKQT 286 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ F + G F + NA+ A G+ ++ VPGR E Sbjct: 287 FEVTCPQFTEQFSLKMRGSFNIENAVAAIAAAQVYGVPV-HCMQKALAETTVPGRMEVFE 345 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + VDYAH S + + + + RII VFGC G + +R +G +A Sbjct: 346 SGDKKVCAIVDYAHNQLSFQKLFQTVFQEYRSFHRIITVFGCPGGKALNRRRELGVLAGM 405 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ---DV 461 +D VT D+P ED +I E+ + +R AIR+A+E + Sbjct: 406 FSDYVYVTSDDPGMEDESRIADEVGSYVEMAGGACDCIADRRIAIRSALEKAGSGTEKTL 465 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++V G+G E + D +I+RE++ Sbjct: 466 VLVLGRGSEKFQRIGRRLYAYPTDANIVRELM 497 >gi|301165430|emb|CBW25001.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteriovorax marinus SJ] Length = 461 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 186/419 (44%), Gaps = 42/419 (10%) Query: 83 SATIRSNTPILVVD--NTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQR 139 I VVD + L A+ K + +TGT+GK++V+ Q+ Sbjct: 71 KKVDVEGVNIWVVDPSDFLWAQDLIANEIYPDKLKIKLAGITGTNGKTTVSYLAMQLATL 130 Query: 140 SGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G S IG + + +D TTPS + L K + + +E SSH L Q Sbjct: 131 LGYPSISIGTIGVRDSKNILEEDILSTTPSYLELRKIIHRY-QDDYKFIFMEVSSHALAQ 189 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +RL+ ++L + ++T+ +DH+DYH+T + YF AK+++ E K Sbjct: 190 NRLNKVRLKSCAWTSFSQDHLDYHKTNEEYFKAKLKILESSDDKNLIVPSSE-------- 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N I D + N Sbjct: 242 ---------------------KSLLALLADNNVSRKIVEPYFDECLEAGFKASYNQANLS 280 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA LC + I ++ + L KL + GRFE + N + VDYAHT ++LE I I Sbjct: 281 VAIALC-EVLIGESIDRKLLSKLSLPAGRFEAIKYNEH--IVIVDYAHTPDALENICGTI 337 Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +S + V+FGCGGDRD+ KRP+MGK AD IVT DNPR+E+P I +I G Sbjct: 338 KKDFSSFELRVIFGCGGDRDRSKRPLMGKAVSKYADNIIVTSDNPRTEEPSSIIDDITPG 397 Query: 436 IPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +I +R AI ++E L++ V+++AGKGHE V G K D + + +I+ Sbjct: 398 ISRDYIRIEDRRLAIEKSLEDLSRPTVVLIAGKGHEEYQDVK-GIKHHFSDKEEVMKII 455 >gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris MG1363] gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 483 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 107/499 (21%), Positives = 203/499 (40%), Gaps = 34/499 (6%) Query: 5 DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++ K +F E+ + + +E +++S DSR +F A G ++ Sbjct: 9 EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 + A V Y + P ++V + ++ ++L A+ Y LA+ Sbjct: 67 -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFYEFPQNKLKTLAL 114 Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F + I + +G + + T+ + LTTP + L + ++ Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+TH+ +E SS R+ G+ G F N+ DHI + +L Sbjct: 175 LENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + A+ + + + + G + ++ ++ Sbjct: 233 LKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHF------VTDGS 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F L G F NAL A A+G + + L V PGR E + T G Sbjct: 287 VSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAIV-PGRMELL-TAKNGAH 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 IY+DYAH SLE +++ + +G++ +V G G++ + +R G++ + + I+T Sbjct: 345 IYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNVILT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474 D+ E+P+ I EI + ++ +R AI+ AI D +++AGKG + + Sbjct: 405 TDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGADMFQL 464 Query: 475 VTNGEKKMSVDCDIIREIL 493 + D ++ L Sbjct: 465 KDGKREPYIGDSPAAQKYL 483 >gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arcobacter butzleri RM4018] gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Arcobacter butzleri RM4018] Length = 429 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 195/467 (41%), Gaps = 57/467 (12%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 + +S IFV + ++ A G + SS Sbjct: 11 TDNSAEADKNSIFV----VSKHNEKYLQNAKENGCIEFLNSSEL---------------- 50 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 I+ +TGT+GK++ A+ + +I G G Sbjct: 51 -------------KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFF 97 Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + Q D LTTP + + G +E SSH ++Q+R++G+ TN Sbjct: 98 INETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRIEGLTFALKIHTN 157 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + RDH+DYH+T + +R+ L ES ++ DD K A + LS Sbjct: 158 ITRDHLDYHKTIE----EYIRVKNSFLSDESVKLVNIDDNVMKYNFTNAFTYSLKNLSDY 213 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330 K+ + +V S + K + F + G F +YN + + Sbjct: 214 KVTKYE-------FEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLMASIAAVHITTQKSLE 266 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L+ V GR E V S + VD+AHT + ++ + +++ + II VFG Sbjct: 267 DICQTLKNFSCVSGRMEIV---SLNPLVIVDFAHTPDGMDEV---LKSFPNKDIICVFGA 320 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447 GG+RD KRP+MG++A + IVT DNPR E+P+ I +I+ GI +R E Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKE 380 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A++ AI + N++ V++V GKG E I+ + +K D D + +IL Sbjct: 381 ALKKAISLANEKSVILVLGKGDEATQIIGD-KKFEFSDKDEVLKILN 426 >gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group] Length = 770 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 115/530 (21%), Positives = 233/530 (43%), Gaps = 55/530 (10%) Query: 10 DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+++ + P+ ++ + V D+ + AG ++V + G + G + +A + Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A+V ++ A +++VD+ L + + LY + +++ + V GT Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G ++ A V+ + + G+ + +G ++ + PI + + ++ + G Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +EA++ G+ +D I TN+ + T + Y N+ LF ++ Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298 E + D S V++ ++ K + K + +V + Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +YN L + + +A+G +++ +E++ +PGR E + + + Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405 VD+A T SL +L ++ + RI+ VV GC G+R++GKRP+M K+ Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKV 637 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNR----- 445 A + +D+ ++T DNP +EDP I +++ G+ +E+ G+R Sbjct: 638 AAEKSDVVMLTSDNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHD 697 Query: 446 --IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+R A+ M + DV+V+ GKG++T I + +K+ D + RE L Sbjct: 698 IRRVAVRAAVAMGEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 746 >gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 503 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 108/492 (21%), Positives = 201/492 (40%), Gaps = 44/492 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + ++ R+ +I +S S ++ G +FV + G K DGH ++ Sbjct: 2 MKLKELLSSIEIKNMD-------DERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYL 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +A GA A +V + P VV N+R L+ +R YG + + + Sbjct: 55 GKAAQNGAVAAIVE--------ELQEDVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 +T T+GK++ + V I ++SG + IG I + LTTP + L LS + Sbjct: 107 GITATNGKTTTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236 +GV+HV++E SS L+ HR++ + + N+ R+HID H + + YF AK L Sbjct: 167 VDKGVSHVTMEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNA 226 Query: 237 --------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 L A + G + + Sbjct: 227 SENSIAVLNLDCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPF 286 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 E +F+ +PG VYN++VA + + G+ +A + E L+ V RF+F Sbjct: 287 TANGQQYEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQF 346 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + +I D+ S ++++ L ++ + ++ +V+ G+R + Sbjct: 347 IFEE--DIKIIDDHFANSGNIDVTLGTLKYMDYEKLHLVYAIRGERGPTVNRENAEAIAR 404 Query: 409 LADIAIVTD------------DNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIE 454 A +T+ + +E + E++ GI ++I AI Sbjct: 405 WAPKLGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGI-KVDLFDELPDSICYAIG 463 Query: 455 MLNKQDVLVVAG 466 N+ D++++ G Sbjct: 464 KANEGDLILLGG 475 >gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 297 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 139/292 (47%), Gaps = 9/292 (3%) Query: 208 SFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH+T + Y +A +L + D E R+ A Sbjct: 1 MFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRSTAA 60 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + K + T+ + + L G+F VYN L A + Sbjct: 61 TVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAGL 119 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G+ ++ +++L VPGRFE V + + VDYAHT +SLE +LK + G Sbjct: 120 VSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQFAKGD 178 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441 + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP I +++ G + Sbjct: 179 VYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASGNNYEV 238 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI AI + D++++AGKGHET I+ E D ++ +E + Sbjct: 239 IIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 289 >gi|218671408|ref|ZP_03521078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 222 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 102/218 (46%), Positives = 134/218 (61%), Gaps = 1/218 (0%) Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 H ++V +KQ I + + F+ PL G+ QV NALVAAGL ++ G++ + + L Sbjct: 2 PHAERVEHFRHKQMAEIHIGDEIFEVDIPLAGDLQVANALVAAGLAMSTGVEPNVAMAAL 61 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 EKL GR E VG G YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+ Sbjct: 62 EKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDR 121 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 GKRPIMG+IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR A+ ML Sbjct: 122 GKRPIMGEIACRLADVVIVTDDNPRSEEPAAIRAEIMAAAPCASEIADRATAIREAVAML 181 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 D L+VAGKGHE + D +R+ L Sbjct: 182 TSGDTLIVAGKGHEEGQTIGA-VTLPFSDHAEVRKALE 218 >gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Arcobacter butzleri JV22] gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Arcobacter butzleri JV22] Length = 429 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 113/467 (24%), Positives = 190/467 (40%), Gaps = 57/467 (12%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 + +S IFV + +I A G + S Sbjct: 11 TDNSAEADKNSIFV----ISKHNEKYIQNAKENGCIEFLNSGEL---------------- 50 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 I+ +TGT+GK++ A+ + +I G G Sbjct: 51 -------------KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFF 97 Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + Q D LTTP + + G +E SSH ++Q+R++G+ TN Sbjct: 98 INETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRIEGLTFALKIHTN 157 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + RDH+DYH+T + +R+ L +S ++ DD + Sbjct: 158 ITRDHLDYHKTIE----EYIRVKNSFLSDDSVKLVNIDD-------NVMKYNFTNAFTYS 206 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330 + + + +V S + K + F + G F +YN + + Sbjct: 207 LKNLSDYKVSKYEFEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLIASIAAVHITTQKSLE 266 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L+ V GR E V S I VD+AHT + ++ + +++ + II VFG Sbjct: 267 DICQTLKNFSCVSGRMEIV---SLNPLIIVDFAHTPDGMDEV---LKSFPNKDIICVFGA 320 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447 GG+RD KRP+MG++A + IVT DNPR E+P+ I +I+ GI +R E Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKE 380 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A++ AI + N++ V++V GKG E I+ + +K D D + +IL Sbjct: 381 ALKKAISLANEKSVILVLGKGDEATQIIGD-KKFEFSDKDEVLKILN 426 >gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 391 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 107/389 (27%), Positives = 172/389 (44%), Gaps = 27/389 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLFIPQAIAQGAEAIVVSSAY 77 + KI + DSR I G +F+ + G DG H F+ A+ GA A++V Sbjct: 6 IGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDV 63 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 +++ P ++V + R +++ AS YG + + +TGT+GK++ + +++ Sbjct: 64 NIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEK 114 Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + +G + S + T P L + L + +Q + +E +S GL Sbjct: 115 ILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL 174 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYAD 249 R+ G FTNL +DH+DYH T Y + K LF + A++ AD Sbjct: 175 HMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNAD 234 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + K G + K + + +S + + L G Sbjct: 235 DPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGR 292 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYNAL A + + GI + + L L + GR E + ++ + VDYAHT ++L Sbjct: 293 FNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEII-DENQDFLVIVDYAHTPDAL 351 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGK 398 E +L IR G+II VFGCGGDRD K Sbjct: 352 ENVLSTIREFAKGKIITVFGCGGDRDAKK 380 >gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 394 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 18/405 (4%) Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTS 151 V + +K +SL A Y + +L TGT GK++ A F I + S + T+ Sbjct: 2 VTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTT 61 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++LTTP + L ++ G+TH+ +E SS R+ G+ G F N Sbjct: 62 LDGKTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLN 121 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + DHI + + LL + S A++ + Sbjct: 122 ISPDHIGPI---EHPTFEDYFYHKRLLMENSRAVVINSGMDHFLFLADQVAEQ------- 171 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + L ++ + + L G F NA+ A C +G A Sbjct: 172 EHAFYGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACFRLGASLAD 231 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + + K VPGR E + + +++VDYAH +SLE +L + +G ++++ G Sbjct: 232 IQKGIAK-TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAP 289 Query: 392 GDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAI 449 G++ + +R G + ++ I+T D+P EDPE I EI I I+ +R +AI Sbjct: 290 GNKGESRRADFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRPIDIVSDREQAI 349 Query: 450 RTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + A+ + +D +++AGKG + IV + + D + + L Sbjct: 350 QKAMSLCQGPEDAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 394 >gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC 43879] gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC 43879] Length = 451 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 116/491 (23%), Positives = 192/491 (39%), Gaps = 75/491 (15%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ D+R ++ IF+ F ++ N Sbjct: 4 HITDDTRKLREDSIFL---------------------------KTPQNAHFIESLPQNIR 36 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 IL D +++ ++ +TGT+GK++ A+ + + G +G Sbjct: 37 ILERDELKEYF---------NTNIKLIGITGTNGKTTTAAAIYSVLLDMGYKVALLGTRG 87 Query: 152 TISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + LTTPS + L + + ++ G +E SSH + Q R+ G++ Sbjct: 88 MFINDTRKKPKGLTTPSLLELYEDIDMAANMGCDFFVMEVSSHAIKQERIYGLEFCLKIL 147 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+DYH+T + Y K + L E II DD + H V S Sbjct: 148 TNITSDHLDYHKTWEDYAKTK---MQFLQSGECIKIINLDDKSGASMRFYPHVLTYGVES 204 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGID 328 G+ + + ++ L G F +YN + A + D Sbjct: 205 KGHLFVNAYGLQDGIFAQMSLRLQKDSMQECVIESSLFGLFNLYNLMAATLAIHAITKQD 264 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + ++ V GR E V + +D+AHT++ ++ + ++ + + I VVF Sbjct: 265 IQSICACVKNFGGVSGRMEIVSKTPL---VIIDFAHTTDGMKQVFESFK---TKNISVVF 318 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------------ 436 G GGDRD+ KR MG A A +T+DNPRSE+P I EI G+ Sbjct: 319 GAGGDRDKSKREKMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNETDIEI 378 Query: 437 --------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +R EAI+ A+ L K VL+V GKG E+V I + E Sbjct: 379 KENTSYEIKSSNAAITMQIILDRKEAIKLALRELQKDWVLLVLGKGDESVQIFRDNE-IH 437 Query: 483 SVDCDIIREIL 493 D + ++EIL Sbjct: 438 FSDKECVQEIL 448 >gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 410 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 148/437 (33%), Positives = 228/437 (52%), Gaps = 37/437 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L++ + +I V+ + + I+ G++FV + ++ D ++I Sbjct: 1 MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46 Query: 61 PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117 Q ++ GA+AI+ S +L R + N ++ S SR Y K P+ + Sbjct: 47 DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174 AVTGT+GK+SV F +QI Q SG ++ IG T N LTTP L Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L V H+ +E+SSHG+DQ+R+ G+KL A +FTN +DH+DYH++ Y K RLF Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ AI+ AD ++K A +V++ G +G I L + + N Q +T+ Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ + ++ FP+ G+FQ YN L A G+ + +EKL PGR E V Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ KR MGKIA AD I Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393 Query: 415 VTDDN----PRSEDPEK 427 +T N PR P Sbjct: 394 ITQANSKKSPRIISPAA 410 >gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 535 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 102/494 (20%), Positives = 189/494 (38%), Gaps = 41/494 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L DL+ + I + + E IN+++ S+ ++ +FV I G++ DGH + Sbjct: 1 MNLTDLLKSVEIDSIRP-NQIETELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYA 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A++QGA I+V + L V N+R+ L++ +S + + +++ Sbjct: 60 KHAVSQGATVIIVEQFIE--------DLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLF 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VT T+GK+++ ++I + L S IG + RLTTP L + + + Sbjct: 112 GVTATNGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q +THVS+E SS L+ R+ +FTN+ +HI H + +AYF+AK L Sbjct: 172 RDQEITHVSMEVSSSALELKRVYHTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRNA 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293 + + D + A + + I + + + Sbjct: 232 SKMSTAIL--NLDEQLLIPLAEETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQE 289 Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +E FD +PG +YNAL A + I V ++ V R Sbjct: 290 PFNTLSGERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVERR 349 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 F+ + + D N+++ ++ I + + +V G + + Sbjct: 350 FQILYDKEFK--VIDDLLLNQNNIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIAES 407 Query: 406 ALDLAD-----IAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 I+T D E+ + +A+R Sbjct: 408 LAKWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFG 467 Query: 453 IEMLNKQDVLVVAG 466 +E LN++DVL+++G Sbjct: 468 VERLNEEDVLLISG 481 >gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 7/291 (2%) Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TNL RDH+DYH T +AY AK +LF K + DDA+ +E+ + Sbjct: 1 MAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAFGRELAGIKQESRL 58 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S +++ + + + T+ + L G F + N L A G + + Sbjct: 59 ITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALLGL 118 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R GR++ Sbjct: 119 DYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLL 177 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEK 442 +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I G + Sbjct: 178 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRPGFTAVDKVRFI 237 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R +AI I + DV+V+AGKGHE + +G++ D + L Sbjct: 238 EGRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEAAKAL 287 >gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 244 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 KF+ V ++ + + L G F V N L A + +G D ++ Sbjct: 20 HKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTALAGLLVLGHDLPKLI 79 Query: 334 EHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 E L V GR E + VDYAHT ++LE L+ R T G + +FGC Sbjct: 80 ETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAARLHTEGELYCIFGC 139 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447 GGDRD GKRP+M IA +LAD I TDDNPR+ED KI A+I++G + +R + Sbjct: 140 GGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGFVQVEKVQVIHDREQ 199 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI+TAIE N++DV+++AGKGHE I+ K D + + L Sbjct: 200 AIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 244 >gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans PW2] gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans PW2] Length = 518 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 116/482 (24%), Positives = 197/482 (40%), Gaps = 21/482 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-------F 82 + +S DSR + +FV G ++ AI +GA A + + + Sbjct: 40 VRGMSIDSRATEMDNLFVC-KGAAFKPA-YLTAAIRRGASAFLCQTQAAAPACDLSAPAE 97 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 A +TP L+V + R ++L A +YG I+ VTGT GK++V ++ I + + Sbjct: 98 LAAAAPDTPGLIVSDLRASMALIAPIIYGHPDRALRIVGVTGTKGKTTVTFMLRSILRAA 157 Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G+ +G ++ TTP L + L G + + +E SS L R+ Sbjct: 158 GMEPSMVGSIEVDDGVERHESHNTTPEAPDLWRHLRNTVDSGRSVMIMEVSSQALKYDRV 217 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI L G F N+G DHI + + + E+ + D + + + Sbjct: 218 LGITLDVGCFLNIGSDHISPIEHP-NFEDYLASKLRIFDQSETAVVNLDTDHLVEVLKRA 276 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +S + ++ I + + + G F V NAL AA Sbjct: 277 QTAGKLVTISSRRTDADLRADQISVASEHIGFDIVERARRHEIALGMSGLFNVDNALAAA 336 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L +G+D + L + V PGR E + VDYAH S ++ ++I + Sbjct: 337 ALARELGVDYTAIATGLSRARV-PGRMERFRSPDGRIVSLVDYAHNELSFRLLFESIESE 395 Query: 380 TSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R I VFG GD+ +R + +IA AD+ I T+D+P E E I A++ P Sbjct: 396 YPDRYVIAVFGAPGDKAFDRRHELPRIAGKSADLLIYTEDDPGGERVEDICAQLADNTPT 455 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 F NR +A+ A E + ++++ KG E ++G +++ D ++ R Sbjct: 456 GTAFEIVVNREQAVERAFEAARSHEGPALVLLLAKGDEHRQRRSDGYARIASDLELARRH 515 Query: 493 LG 494 L Sbjct: 516 LE 517 >gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dietzia cinnamea P4] gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dietzia cinnamea P4] Length = 436 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 130/438 (29%), Positives = 206/438 (47%), Gaps = 14/438 (3%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + + + + + ++ G +F A+ G + G F A+ Sbjct: 3 TARQLADAVGARLLGDRSGADVDLIGATIRAQDCGPGILFAALPGTRVHGASFGATAVEA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ + A + P+LV R L ++ + G + ++ +TGTS Sbjct: 63 GASAVLTDPEG--IELMAAVAGRLPVLVHPAPRAVLGAVSAAVTGDPSADLDVVGITGTS 120 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + G + IG T + A +RLTTP L+ + + G Sbjct: 121 GKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALPSRLTTPEAPEFQALLARMRAAGAR 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------ 237 V+ E SSH L R+DG++ G+F NL +DH+D+H + YF AK RLF+ Sbjct: 181 AVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDFHPSMDDYFRAKARLFDVEADPGSA 240 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + A++ DD + + ++ +A + + + Q+ T+ Sbjct: 241 VWPAERAVVVIDDEWGRRLVGMRPDAVTVSAEPDADADWTAGESTPTDRDTQEFTVRGPR 300 Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D PL G F V NALVA + A+G D A L ++ V PGR E V + Sbjct: 301 GLTVDVELPLMGRFNVANALVALAIVDALGGDVAAAAAGLMRVRV-PGRLEPV-VRGQDF 358 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 R+ VDYAH ++ +L+++R T GR+ VV G GGDRD GKRP MG A ++AD+ +VT Sbjct: 359 RVLVDYAHKPGAVAAVLRSVRAQTEGRVAVVLGAGGDRDPGKRPKMGAAAAEIADLVVVT 418 Query: 417 DDNPRSEDPEKIRAEIIH 434 DDNPRSEDP IRA + Sbjct: 419 DDNPRSEDPAAIRAAVRA 436 >gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 297 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 7/289 (2%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH T +AY AK +LF K + DD + +E+ + S Sbjct: 7 TNLSRDHLDYHGTMEAYAAAKAKLFAWPDLKCRVINL--DDDFGRELAAVKQESRLITYS 64 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 +++ + + + T+ + L G F + N L A G + + Sbjct: 65 QLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALLGLDYAL 124 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R GR++ +FG Sbjct: 125 DEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFG 183 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446 CGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I G R Sbjct: 184 CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRG 243 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +AI I N DV+V+AGKGHE + NG+++ D L + Sbjct: 244 QAIAELIASANANDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 291 >gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703] Length = 192 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 103/190 (54%), Gaps = 5/190 (2%) Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N LVA +++G +L L V GR E + VDYAHT ++L Sbjct: 4 FNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDAL 62 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I Sbjct: 63 EKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIV 122 Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 A+I+ G+ R EA+ +AI DV+++AGKGHE +V N D Sbjct: 123 ADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDR 181 Query: 487 DIIREILGLI 496 + +LG++ Sbjct: 182 VTVARLLGVV 191 >gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 299 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 143/299 (47%), Gaps = 11/299 (3%) Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MRLFEELLPKESPAIIYADDAYSKEV 256 FTN+ +DH+DYH+T + Y +AK K AII DD + Sbjct: 1 CDFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFF 60 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + Q + + + HN T+ + L G F +YN L Sbjct: 61 IHSTAAHVVTYGV--SQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVL 118 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA G+ + L+ ++ V GRFE V + + VDYAHT +SLE +LK I Sbjct: 119 AAAASANISGVPLKNIKAALQSINGVSGRFEQV-EAGQDFSVIVDYAHTPDSLENVLKTI 177 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 TIT +IVV GCGG+RD+ KRPIM +IA D + T DNPR+EDP I A++ G+ Sbjct: 178 ETITDENVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTGL 237 Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +I +R EAI A+ + K DV+++AGKGHET I+ + D + + + Sbjct: 238 KHTNYIVIIDRQEAINHAVSLAGKGDVVLIAGKGHETYQIIGDAVTS-FDDREAAKAAI 295 >gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 514 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 104/491 (21%), Positives = 191/491 (38%), Gaps = 38/491 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ LI D E + + +I+ V S+ ++ +FVAI G + DGH FI Sbjct: 1 MKLKTLI--DSIEYLEIKNGDEKTLESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+A GA A +V + + + V N+R L+ AS +G+ + + Sbjct: 59 KDAVASGAVAAIVED---------FVEEDILQIKVKNSRIALAKVASIFFGEPSKKLKVT 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177 +T ++GK+S A + I ++G ++ G T + + LTTP L + Sbjct: 110 GITASNGKTSTAFMTKCIYDKAGYNTGISGTVYTKYADVEIPSILTTPESKDLQYYFYDM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++G+ HV +E SS + R +F N+ +HI H + + Y++ K RL Sbjct: 170 VNKGIDHVIMEVSSSAGELARAYATDFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRHA 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + L + I + K + ++ + Sbjct: 230 KDDCVAILNSDFELINDLRNNTKAQVVTYSLKNNLEDISIDNLDLSTGFGKFKFIVNRDI 289 Query: 298 K---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 K FD + G V NA+VA + + GID +L ++ V RFE Sbjct: 290 KLKGITIKKQSFDVELKVAGYSSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVERRFEV 349 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + G +I D+ N++E+ L + + + +++ G R ++ Sbjct: 350 IFDE--GFKIVDDHFANKNNIEVTLDTLSKMDYKNLDILYAIRGSRGADLNEENAEVIAS 407 Query: 409 LADIA-----IVT--------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 + IVT D ++ E + + F+ + N EA+ I+ Sbjct: 408 WYERLKPREFIVTLSKDTVTWKDEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVIDG 467 Query: 456 LNKQDVLVVAG 466 D+++ AG Sbjct: 468 TKDDDLVLFAG 478 >gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] Length = 536 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 140/500 (28%), Positives = 224/500 (44%), Gaps = 49/500 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ D+R + G IF A+ G G F A A GA A++ ++ + +A I Sbjct: 40 GITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGASAVLTDASGAAAAEAAGIP---- 95 Query: 92 ILVVDNT------------RKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 ++V + R+ ++ A+ +YG+ E AVTGT+GK++ + + + Sbjct: 96 -VLVADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTFAVTGTNGKTTTSFLLAHLL 154 Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G IG I RLTTP L L+++ GVT + +E SSH L+ Sbjct: 155 GLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDLHALLAHMVEAGVTDLVMEVSSHALEL 214 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+D ++ +FT+L +DH+D+H + Y+ AK LF + A++ DD + + + Sbjct: 215 HRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFTP--ARARRAVVSVDDEWGRRL 272 Query: 257 MKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHNKQQVTISVE-----GKDFDFLFPL 306 A AG V ++ +G+ ++ V A + T++ Sbjct: 273 AGDARAAGIDVATLATRGEHAAAAAWTVRDVVAGADAMSFTLTGPGDVALTTSLTMPGAF 332 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 A + + VPGR E VG R VD+AH + Sbjct: 333 NVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEVVGAEPR---CVVDFAHNT 389 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++ + L +R TSGR+ VV G G+RD+GKRP MG+ A+ AD IVTDD+P EDP Sbjct: 390 DAVGIALAELRATTSGRLHVVLGATGERDRGKRPAMGEAAVLGADAVIVTDDDPHDEDPA 449 Query: 427 KIRAEIIHGI-------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 ++RAE++ G E R AI A+ +D ++VAG+GHET+ Sbjct: 450 QVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAAAVAGAAPEDTVLVAGRGHETIQ 509 Query: 474 IVTNGEKKMSVDCDIIREIL 493 V GE+ D +R L Sbjct: 510 EVA-GEELPLDDRVEVRAAL 528 >gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter mediatlanticus TB-2] gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter mediatlanticus TB-2] Length = 408 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 163/386 (42%), Gaps = 36/386 (9%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169 K + +TGT+GK++ A + + + G + G + ++ LTTP Sbjct: 52 KLKTKFIGMTGTNGKTTTAFVLSFLLKNLGFNVVTQGTEGLYFNLEKKENKTLTTPDIFT 111 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 K +E SSH + Q+R++GI+ A T+ +DH+DYH++ Y Sbjct: 112 TIKRAYKYKPD---FFVMEVSSHAIAQNRIEGIRFDAKIMTSFSQDHLDYHKSIDEYKKV 168 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F+ D K + + + + + ++ Sbjct: 169 KESFFQ--------------DESVKVINGKLKMENGKYSIIEIGNYDFKVYNKNLYVLEK 214 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + L I +++ L V GR E V Sbjct: 215 PIVNDIPMAGEFNKMNFS--------LALKTAEILTNSSFSILNSQLNNFKGVSGRMEIV 266 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 S+ I VD+AHT + +E +L +++ G IVVFG GG RD+ KR +MG++A Sbjct: 267 ---SKNPLIIVDFAHTPDGIEKVLSSVK----GEKIVVFGAGGKRDKEKRELMGEVASKY 319 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 A+ I+T+DNPR E+P KI +I G+ + +R EAI+ AI++ +L V GKG Sbjct: 320 AEFLIITNDNPRCEEPMKIANDIAKGVSIPYEIILDRKEAIKKAIKLAKNGKILFVLGKG 379 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E N ++K D ++I EILG Sbjct: 380 DEEFIEYCNKKEK-FKDKNVILEILG 404 >gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187] gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187] gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 252 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 9/253 (3%) Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ADD + K G + K + + +S + + Sbjct: 1 MNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLRPKGIRFLVSSFNGEIEVNLN 58 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYNAL A + + GI + + L L + GR E + ++ + VDYAHT Sbjct: 59 LVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEII-DENQDFLVIVDYAHT 117 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP Sbjct: 118 PDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDP 177 Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + I +I G + + +R AI AI M + D++++AGKGHET I+ + Sbjct: 178 QAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST- 236 Query: 481 KMSVDCDIIREIL 493 D + R+ + Sbjct: 237 IHFDDKEKARQAI 249 >gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK355] Length = 400 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 101/411 (24%), Positives = 175/411 (42%), Gaps = 18/411 (4%) Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A Y + + LA TGT GK++ A F QI +S + Sbjct: 2 GIPVLLVNDVKQAMSLLAMEFYDHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 61 Query: 147 -IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ + LTTP + L K ++ S TH+ +E SS + R+ G+ Sbjct: 62 STMNTTLDGETFFKSTLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAYLKKRVYGLTFD 121 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI + + LL S A+I +++K + Sbjct: 122 VGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVIVNSGMDHFQIVKEQVASME 178 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + A + ++ + L G F NA+ AA C+ + Sbjct: 179 HDFYGADSSNT--ITDSQAFSFEATGKLA-----GHYDIQLIGRFNQENAVAAALACLRL 231 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G + VPGR E + + G +++VDYAH SL +L ++ G+II Sbjct: 232 GASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNGVSLSNLLSVVQEHQKGKII 289 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKG 443 ++ G G++ + +R G + ++ I+T D+P EDP I EI I + Sbjct: 290 LLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIA 349 Query: 444 NRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI+ A+ + + + +++AGKG + IV + D + + L Sbjct: 350 DREEAIKKALSLTEREGEAVILAGKGADAYQIVEGEKVPYPGDYALAEKYL 400 >gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM 20098] gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM 20098] Length = 513 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 104/516 (20%), Positives = 193/516 (37%), Gaps = 43/516 (8%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLF 59 +L+ + QL + + ++ D+R + + V G DG Sbjct: 15 HNLLREIINGDSWQLDTAHIDGVDTPFTNLTYDTRTVAPNTLLVC-KGRFRPEFLDGTE- 72 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 +G A V S S P L+V++ RK LSL A+ Y ++ Sbjct: 73 -----ERGLAAYVAESDLSSHTTK-------PGLIVNDARKALSLLAAAFYDHPERDLTV 120 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKAL 174 + T K + + S+ + S+ ++ LTTP + + + Sbjct: 121 IGITGTKGKTTTAYFTQSILNTYSAGRCALFSSVDNCLDGHTYAESDLTTPESLDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 G+ ++ +E SS +R+ G+ +F N+ DHI + Sbjct: 181 RQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISP---IEHPTFEDYFHC 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + + S A++ D ++++ A ++ G + +NK+ + Sbjct: 238 KRQIIANSRALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDPNNKEGFIAT 297 Query: 295 VEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + GEF + NA A + G+ ++ H + VPGR E + Sbjct: 298 ISDGERSVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNVQVPGRMERI 357 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406 +YVD+AH S++ ++ I + + RI +V G G + +R + K A Sbjct: 358 R-GGDNLLVYVDFAHNYISVKSLVDEIERVYGERNPRITLVSGTTGGKAIDRREGIVKGA 416 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK-QD- 460 L + I T D+P EDP I ++ + R +A+ AI + D Sbjct: 417 LGRVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVAKAIADAREHNDR 476 Query: 461 --VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 V++V GKG ET +I+ D ++R +LG Sbjct: 477 FNVVLVIGKGDETRNIINGKPVPYEGDSVVVRRVLG 512 >gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 431 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 182/403 (45%), Gaps = 13/403 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL +L + +I ++ DSR ++ G ++ A+ G + G F QA GA A Sbjct: 32 LGELAARLGVQTPGAA--EITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAA 89 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 ++ + + + P+LV +N R + A+ +YG ++ + +TGTSGK++ Sbjct: 90 VLTDESGA----ERAAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTT 145 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 A V+ + +G S+ IG + TTP L + + +G V++ Sbjct: 146 TAYLVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAM 205 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L R+DG F NL +H+++H + YF AK +LF +E+ Sbjct: 206 EVSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTPRRSREAVVNF- 264 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306 DD Y + ++ A + G+ + V + T + PL Sbjct: 265 -DDEYGRRLVDEATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPL 323 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V N L A G+D + + + VPGR E V + VDYAH + Sbjct: 324 PGPFNVANTLAAVVTLAVAGLDPQTAADGIAAVPGVPGRLERVDAG-QPYLAVVDYAHKT 382 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 +++E +L+++R +T G++ +V GCGGDRD+ KR MG A Sbjct: 383 DAVESVLRSLRKVTKGKVHIVLGCGGDRDRTKRGPMGAAAARN 425 >gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 501 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 111/488 (22%), Positives = 196/488 (40%), Gaps = 43/488 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I V+SDSR ++ G+IFVAI G KEDG+ FI +A+ +GA I + ++D Sbjct: 6 IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKDCIVK-- 63 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF--VQQICQRSGLSSF 145 V + RK L ++ YG + +L + T + + I + SG + Sbjct: 64 ------KVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAG 117 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG I + ++LTTP + L+ + +GVT +E SSHGL +R+ GI Sbjct: 118 LIGTLFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDF 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE------ELLPKESPAIIYADDAYSKEVMK 258 TN+ DH+++H+ Y N+K +LF+ L KE++ Sbjct: 178 DIAIHTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILA 237 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNA 315 + + F + T + +E ++ L G +YNA Sbjct: 238 ITYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNA 297 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A C+ + I +++ ++ V R + + DY H +S E + Sbjct: 298 LLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQI--IYRDKFTVIDDYCHNPSSYEAVFNA 355 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDD-------NPRSE 423 I+ + + +V G G+R ++ D ++TD N E Sbjct: 356 IQNLQYNNLHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFIDPMNSALE 415 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + + I E+ F + N +AI I L + D+L++ G + G++ Sbjct: 416 EEKNICFEVFNSSAIPFQYERNLRDAIEEGIRDLRQGDILLLLG-----AQSMDKGKQLF 470 Query: 483 SVDCDIIR 490 +II+ Sbjct: 471 F---EIIK 475 >gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279] gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279] Length = 552 Score = 183 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 125/523 (23%), Positives = 213/523 (40%), Gaps = 36/523 (6%) Query: 4 QDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 + L D ++++ + + + ++ ++ DSR + +FV G F+ Sbjct: 31 KPLTLFDLVDVLHASDVEARVFGDGAACVDGMAIDSREVAPRNLFVC-KGAGFRPA-FLE 88 Query: 62 QAIAQGAEAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116 A+A GA A + S+ + TP LVV + R+ ++L A +Y + Sbjct: 89 SAVAAGAAAYLCEGVGEGLSIPSELVAAAAVTPALVVSDVRRAMALVAPVIYRHPEDQLH 148 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175 ++ +TGT GKS+VA ++ I +G +G ++ TTP L + L Sbjct: 149 VVGITGTKGKSTVAYMLRSILVAAGQEPSILGSIETDDGKVRYESHNTTPEAPDLWRHLR 208 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 G + +E SS GL R+ G+ G F N+GRDHI H + YF +K+R+ Sbjct: 209 NTVDAGRRTMVMEVSSQGLKYDRVLGLPFEIGCFLNIGRDHISGVEHPDFEDYFASKLRI 268 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + D + A V G + V + VT Sbjct: 269 FNQCEVAVVNLATDHVDRVLQAAKSAPCVATFAVEHAGEGSHGGKVWPVEPLFIASGVTQ 328 Query: 294 SVEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 G + +PG F V NAL A + +G+ + L Sbjct: 329 LPTGGLAFTVRERAAEGEIACEEHIELGMPGLFNVDNALAAISMARLLGVGYDAIRAGLA 388 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ 396 ++ V PGR E V + VDYAH S E + K+++ R++ +FG G + Q Sbjct: 389 QIRV-PGRMELVSSADGHVLAIVDYAHNELSFETLFKSVKAEYPDRRVVALFGAPGGKAQ 447 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453 +R + ++A AD + T+++P + E I AE++ P +R EA+RT + Sbjct: 448 ERREALPRVAGAYADHLVYTEEDPAHDRVEDICAELVKNTPAGVSHEVILDREEAVRTVL 507 Query: 454 EML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E + V+++ KG E + ++ D I RE+L Sbjct: 508 ERALACGEPSVVLLLAKGDEETMHRGDEYPEVKSDLAIAREVL 550 >gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] Length = 515 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 96/516 (18%), Positives = 180/516 (34%), Gaps = 40/516 (7%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFI 60 L+ + L+ + + ++ D+R ++ G + V G F+ Sbjct: 15 HHLLDEVITPERWSLNADGIDNADVPFTHITYDTRTVREGTLLVC------KGRFRPEFL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +G A V +S + P L+V++ RK LSL ++ YG + + Sbjct: 69 DGLKERGLVAYVSERDFSDH-------TEVPGLIVNDARKALSLLSAAFYGMPQNELTVI 121 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAKALS 175 T K + + S+ + ++LTTP + + + Sbjct: 122 GITGTKGKTTTAYFTQAILNAYSNGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G+ ++ +E SS +R+ G+ G+F N+ DHI + + Sbjct: 182 EAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHIS---DIEHPTFEDYLYCK 238 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294 L + A + DA ++++ A L+ S Sbjct: 239 RQLAYHARAFVLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA 298 Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +F L G+F NAL A L G+ H + VPGR E Sbjct: 299 FSIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELF 358 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMGKIA 406 VDYAH S+ ++ + R +V G G++ +R + + A Sbjct: 359 TGTDGDTVAIVDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVEAA 418 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD-- 460 D + T ++ +E I E++ + +R++AI +A+E + D Sbjct: 419 QDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGL 478 Query: 461 -VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 V+++ GKGHE N D ++ +L + Sbjct: 479 DVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 514 >gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC 27678] gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC 27678] gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] Length = 515 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 98/516 (18%), Positives = 182/516 (35%), Gaps = 40/516 (7%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFI 60 L+ + L+ + ++ D+R ++ G + V G F+ Sbjct: 15 HHLLDEVITPERWSLNADGTDNADVPFTHITYDTRTVREGTLLVC------KGRFRPEFL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +G A V +S + P L+V++ RK LSL ++ YG + + Sbjct: 69 DGLKERGLVAYVSERDFSDH-------TEVPGLIVNDARKALSLLSAAFYGMPQNELTVI 121 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALS 175 T K + + S+ + S+ ++ LTTP + + + Sbjct: 122 GITGTKGKTTTAYFTQAILNAYSNGRCALFSSVDNCLDGHTYVESELTTPESLDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G+ ++ +E SS +R+ G+ G+F N+ DHI + + Sbjct: 182 EAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHIS---DIEHPTFEDYLYCK 238 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294 L + A + DA ++++ A L+ S Sbjct: 239 RQLAYHARAFVLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA 298 Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +F L G+F NAL A L G+ H + VPGR E Sbjct: 299 FSIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELF 358 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406 VDYAH S+ ++ + RI +V G G++ +R + + A Sbjct: 359 TGTDGDTVAIVDYAHNYTSVRALIDFVEQRYGERKPRITLVAGSAGNKAFDRRQEIVEAA 418 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD-- 460 D + T ++ +E I E++ + +R++AI +A+E + D Sbjct: 419 QDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGL 478 Query: 461 -VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 V+++ GKGHE N D ++ +L + Sbjct: 479 DVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 514 >gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 362 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 165/363 (45%), Gaps = 15/363 (4%) Query: 143 SSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + D + TTP IY+ L + V++E SSHGL Q+R+ Sbjct: 3 KTATMGTLGNGFLKSLHDTKNTTPEAIYIQSFLYMAVEKKTKLVTMEVSSHGLVQNRVKE 62 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I G TN+ +DH+D+H + Y +AK F + K I+ A+D + ++R Sbjct: 63 IPFHIGILTNISQDHLDFHGNMENYKSAKWSFFSK--HKIKKVILNANDKCGQIWLRRLF 120 Query: 262 NAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 N Y K+I+ + N +T + L G+F N Sbjct: 121 NVYTIAVTIKDSTQKKYATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAINL 180 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L++ + +G ++ K+ + GR E V N+ +DYAHT ++L+ L + Sbjct: 181 LLSLACLLELGYKIYDLINTSYKIQPINGRMETVFHNN-KLVFIIDYAHTPDALKKALNS 239 Query: 376 IRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IR + +FGCGG+RD+ KRP+MG IA +A+ I+T+DNPR+E E I +I++ Sbjct: 240 IRLHYNQSYIWCIFGCGGNRDKKKRPLMGSIAEKIANKVIITNDNPRNEKEENIINDILN 299 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G NR +AI A ++ +AGKGHE I+ N D ++ Sbjct: 300 GCKNPKKIFIIPNRKQAISYAFHQSQDDHIIFLAGKGHEDKQIIQNKHINY-SDKKVVLN 358 Query: 492 ILG 494 +L Sbjct: 359 LLE 361 >gi|288940178|ref|YP_003442418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum DSM 180] gi|288895550|gb|ADC61386.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum DSM 180] Length = 487 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 156/387 (40%), Gaps = 40/387 (10%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173 + VTGT+GK++ +++ I G IG + T+P I L + Sbjct: 115 RFIGVTGTNGKTTTVKYLESILAAHGRRVLSIGTLGVFLDGVRQVETGFTSPPLIELRRL 174 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L V +EASSH LDQ R+ GI +TN +DH+DYH+ + +YF AK Sbjct: 175 LHAH-QDQADVVVMEASSHALDQGRVAGIPFQDAGWTNFTQDHLDYHRDEASYFAAKAH- 232 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ G + + + + Sbjct: 233 ----------------------LLDLIRPGGRLYCTSRAVADRLAALGPTPVPVEVLEPA 270 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCI--AIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + L N +A L + + +H L V GRF Sbjct: 271 RLPPEAIAAKPFLALAHNRANYALAVALAERVLDAMPTDETRQHWRHLQPVDGRF--DCR 328 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 I +D+AHT ++L+ IL IR R++ +FGCGGDRD+ KRP+MG + Sbjct: 329 VHGNRAIVIDFAHTPDALDTILGAIREGFPDARVVTLFGCGGDRDRSKRPLMGAAVARHS 388 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEM--LNKQD---VL 462 D IVT DNPR E PE+I +I+ G P + +R EAI + D V Sbjct: 389 DAIIVTSDNPRHEPPERIIDDILTGFPEDQDYSVVVDRAEAIARLFDQLAARPDDEPWVA 448 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDII 489 ++AGKGHE I +G K D + + Sbjct: 449 LIAGKGHERY-IDRDGHKTPYSDQEQV 474 >gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC 39149] gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC 39149] Length = 331 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 103/315 (32%), Positives = 147/315 (46%), Gaps = 15/315 (4%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ G +TN G DH+D+H YF AK +LF+ + Sbjct: 15 MEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQLFDG------RCAV 68 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305 + + A + G + V Q+ T G Sbjct: 69 EVLNHDDPALRPLFTPATVSYSAAGDPTATWYATDVDGEGYAQRFTAHGPGGLTVPAGVA 128 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG V NAL+A + G+D+ + VPGR E V + + R VDYAH Sbjct: 129 LPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPGRLELV-SAAGPVRGVVDYAHK 187 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++++ L +R +++GR+I V G GGDRD+GKRP MG A AD+ +VTDDNPR+E+P Sbjct: 188 TDAIVAALAALRELSAGRLICVIGAGGDRDRGKRPEMGAAAARGADVVLVTDDNPRTEEP 247 Query: 426 EKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 IRAE++ G +E G R AI A+ + DV+ V GKGHE V GE Sbjct: 248 AAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRLAAPGDVIAVLGKGHERGQEVG-GE 306 Query: 480 KKMSVDCDIIREILG 494 D + + L Sbjct: 307 VLPFDDRTELADALR 321 >gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus tauri] gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus tauri] Length = 657 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 113/578 (19%), Positives = 220/578 (38%), Gaps = 97/578 (16%) Query: 6 LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L+ + F + ++ + + +I+ +++D + +G +FV VG + G +A+ Sbjct: 58 LLREIFADAEVDAEWYGVDEDEDVEISGIANDINALLSGDLFVCPVGGEA-GASLAREAV 116 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 A G AIV S ++ P VV N + L+ A YG +A+TG Sbjct: 117 AAGPVAIVASERVEGV-------ADVPCAVVANVDEALADIARVFYGDPSTALTAIALTG 169 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTP-------------- 165 GK++ + V+ + + + + +G D +LTT Sbjct: 170 AVGKTTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRD 229 Query: 166 -----------------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + + ++ G +E S+ + + G+ Sbjct: 230 RTSTAPGWLAPYRGKYEFEELGADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGM 289 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260 + T+ +Y+ Y + +F+ L E+ + D ++ + Sbjct: 290 NFDIVALTSFEGARKNYNGADSEYSSFVADVFKVLENAETQRGVINIDEEDADLCREYAS 349 Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +G ++ +V + +++S + + + L GE + A Sbjct: 350 GVPVVTYSTQIGNTAADVYPARVDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCAT 409 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +A I ++ LE V+PGR E V + VD A+T +E +++++R Sbjct: 410 AIGLAAEISLDVIAAGLEACEVIPGRMELVDMGQ-DFSVLVDNANTPEGIERVIQSVRAA 468 Query: 380 TSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R+I V GC GD ++G+R ++GK+A D++D+ +T+D+P++EDP KI +I G Sbjct: 469 NCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFR 528 Query: 438 GFIEK---------------------------------------GNRIEAIRTAIEMLNK 458 I + +R AIR AI M + Sbjct: 529 NEIYENDKIKDEALFPFLKDMYEVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAER 588 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 DV+++ G+G + +V EK D R+ L I Sbjct: 589 DDVVLILGRGSKDYFVVGR-EKHWFDDVVEARDALQKI 625 >gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] Length = 480 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 96/461 (20%), Positives = 170/461 (36%), Gaps = 33/461 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++ DSR ++ G+ FVAI G K DGH FI +AI +GA I RS Sbjct: 12 FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKS-------RSG 64 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+ V ++R L A+ Y ++ VTGT+GK++ + + G +S I Sbjct: 65 IPIVRVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLI 124 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G LTTP P+ L K L + + + +E SSHG+ R+ G + Sbjct: 125 GTVKVDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAI 184 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAG 264 TN+ DH D H Y K E+ P + D + + K G Sbjct: 185 KVGTNITVDHFDLHSDFSDYVQVKKSFLEDKNPHTLVLLNNDDHYLSSFGNIAKNQIGYG 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------FQVYNALVA 318 + + +I + +P +YNALVA Sbjct: 245 ITTNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYNALVA 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + G+ + + + + RF+ + I D AH S + K + Sbjct: 305 ITIGLYYGLTPEKIQDFFGQFRGIWRRFQVIYNK--DFAIIDDCAHNPGSYGAVFKTVSQ 362 Query: 379 ITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTD---------DNPRSEDP 425 + +++V G+R ++G +GK + ++T D E+ Sbjct: 363 LKYKNLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNYYLLTTNCNDVVKPIDKVSPEEE 422 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + + + A++ ++ + D++++ G Sbjct: 423 KVFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLG 463 >gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis K85] gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis K85] Length = 290 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 114/276 (41%), Gaps = 13/276 (4%) Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 + T + + +R A + G Sbjct: 8 PAWPTTSRPRRHCSIRTRHCAPAPPWCASTTTP---GARWRRGPPTRSPSAPPTGPHTGA 64 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + +Q I G LPG + V N LVA + +G+ + L Sbjct: 65 PRMWRPRTRGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 124 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 ++ V PGR E + G VDYAH +L +L + R+ VVFG GGDRD Sbjct: 125 REIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 181 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIR 450 GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G +E +R +AIR Sbjct: 182 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 241 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 A+ DV+++AGKGHET G + D Sbjct: 242 HAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 276 >gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 196 Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 5/184 (2%) Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + + +L+ L KL GR + +G + + VDYAHT ++LE + Sbjct: 7 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 65 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I Sbjct: 66 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 125 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G R +AI I N DV+V+AGKGHE + +G++ D Sbjct: 126 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 184 Query: 490 REIL 493 + L Sbjct: 185 AKAL 188 >gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii DSM 519] gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii] Length = 516 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 99/485 (20%), Positives = 188/485 (38%), Gaps = 38/485 (7%) Query: 10 DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 D L+ + I + I ++ S ++ G +F I G K DGH ++ A + Sbjct: 3 DVASLLKGIEILEENRPLSHDHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNK 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA VV S + P +V + R L+L A Y + ++ +T T+ Sbjct: 63 GAVGAVVE--------SIQDNIDIPQYLVSDARHSLALCACNFYNHPSKFMKMIGITATN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ A + I + + + +G + LTTP + L + + G+T Sbjct: 115 GKTTTAFMIDNILENNNFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLT 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV++E SS ++ R+ GI F N+ R+HID H+T + Y K L Sbjct: 175 HVTMEVSSSAIELDRIAGIDYDIVIFNNISREHIDLHETFENYVALKSSLITNAKKGSWA 234 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--------- 294 + + + V K N ++ + + K V IS Sbjct: 235 ILNMDCEEAASLVNKTEANVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYL 294 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + F+ +PG VYNA+ A + + ++ E V RFEF+ N Sbjct: 295 YMNQSFEISLSVPGYHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVERRFEFIYEN-- 352 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA- 413 +I D+ + ++++ ++ + + ++ +V+ G R + + A Sbjct: 353 DFKIIDDHFANAGNIDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLN 412 Query: 414 -----------IVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461 T+ + +++ E + +EII+ + +AI A+ + DV Sbjct: 413 LSEIIATKSADYTTEKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDV 472 Query: 462 LVVAG 466 +++AG Sbjct: 473 ILLAG 477 >gi|218458611|ref|ZP_03498702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli Kim 5] Length = 167 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 77/150 (51%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E VG G YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+ Sbjct: 15 RLELVGHTKDGALAYVDYAHKPDALENVLSSVRPFTTGRVVVVFGCGGDRDRGKRPIMGE 74 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR A+ ML D L+V Sbjct: 75 IACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCAAEIADRAIAIREAVAMLTSGDTLIV 134 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AGKGHE + + + D +R+ L Sbjct: 135 AGKGHEEGQTIGSVTLQ-FSDHAEVRKALE 163 >gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nautilia profundicola AmH] gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nautilia profundicola AmH] Length = 410 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 179/426 (42%), Gaps = 48/426 (11%) Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGK-------HPENILAVTGTSGKSSVASFV 133 D + + + L K+ + + K + +TGT+GK++ A + Sbjct: 14 DNTKELSEDKLFLKTKQNEKYSKDISKYITPKELIQNLTLKTKFIGITGTNGKTTTAFVL 73 Query: 134 QQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q++G S G + LTTP + +E SS Sbjct: 74 GHLLQQAGYSVGIQGTEGFYLNGEKIEAKTLTTPPIFTT---IKRAVKYEPDFYIMEVSS 130 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H + Q R++GI+ A T+ +DH+DYH+T + Y K F + K Sbjct: 131 HAIVQQRIEGIEFTAKILTSFSQDHLDYHKTMEEYKRVKESFFRDETVKVF--------- 181 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +++ + + + +L + K P+ GEF Sbjct: 182 -NGKLLVKNEKCKVKSGGYEFNLNCKNLYVLE--------------KPIVDDIPMAGEFN 226 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N +A + +L + VPGR E V S+ + +D+AHT + +E Sbjct: 227 KMNFSLALKTASLLTNS-SLSTFNFSLFEGVPGRMEIV---SKKPLVIIDFAHTPDGMEK 282 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L + G+ IVVFG GGDRD+ KR +MG++A A+ I+T+DNPR ED +I E Sbjct: 283 VLSAV----EGKKIVVFGAGGDRDKDKRHLMGEVADKYAEYIIITEDNPRCEDSNEICKE 338 Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I GI + NR +AI+ A+++ K++ L++ GKG E + + D + Sbjct: 339 IAKGIKSIPYKIISNRKDAIKEAVDIAKKKNYTLMLLGKGDENYIQYCDKKIDY-SDRET 397 Query: 489 IREILG 494 ++++L Sbjct: 398 VKKLLS 403 >gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 172 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R + +G + VDYAHT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M + Sbjct: 14 RMQRLGGCRTKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAE 73 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 + LAD VTDDNPRSE P I +I G R +AI I N DV Sbjct: 74 VVERLADGVWVTDDNPRSESPASIFDDIRPGFAAADKVRFIEGRGQAIAQLIASANADDV 133 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +V+AGKGHE + +G++ D + L Sbjct: 134 VVLAGKGHEDYQEI-DGQRHPFSDLQEAAKAL 164 >gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis V9] Length = 516 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 177/511 (34%), Gaps = 33/511 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+++ + ++ ++ E ++ D+R + G + V GN ++ QA Sbjct: 16 NLLHEIITPHMWTMNAASVENNEVPFTAITYDTRTVTPGSLLVC-KGNFN--PKYLEQAN 72 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 G A V ++ YS ++ P L+V + +K LS+ A Y HPE L + G + Sbjct: 73 KLGMAAYVATNDYSA-------YTDAPGLIVSDDKKALSILAQAYYD-HPERQLTLIGIT 124 Query: 125 GKSSVASFVQQIC----QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 G + SG ++ ++ LTTP + + + Sbjct: 125 GTKGKTTTAYYTHAIINALSGNTTALFSSVDNCVDGMHYVESDLTTPESLDAVRMMREAV 184 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G+ ++ +E SS +R+ +F N+ DHI + + Sbjct: 185 NNGMKYLVMEVSSQAYKVNRVYDFHFDVAAFLNISPDHISPIEHPSFENYLWCKRQIIRN 244 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +D + ++ + V + T Sbjct: 245 ADMLVLGERSDHEQLLLEDAELNRVPVSTFALADSPAQSDIADVTCAPTNMEHTAFDYFV 304 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-----ALVLEHLEKLHVVPGRFEFVGTNS 353 D + L L + A +AI D + GR E + + Sbjct: 305 DGERLGSLTLAMEGDFNYANAAAALAIAHDIGMDVSDPRALASLADVRISGRMEEMHDSR 364 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 VDYAH S+ +L + I ++ G G++ +R + K A D Sbjct: 365 SNTLAIVDYAHNFASVNALLDFVEQRYGAEHPHITLITGSAGNKAYDRREGIVKAAQDRV 424 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD----VL 462 I+T ++ +E E+I +E+ + + +R EA++ A++ D +L Sbjct: 425 QKLILTAEDTDTEPIEQICSEMANNVTNEDLDVQTILDRAEAVKHAVDEARAADGGLSIL 484 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ GKG E N D IIR + Sbjct: 485 LLIGKGDEQWIKDRNIHTPYEGDSQIIRRLF 515 >gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica SIR-1] gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica SIR-1] Length = 455 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 119/443 (26%), Positives = 189/443 (42%), Gaps = 27/443 (6%) Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 +V + +S + ++TP LV+ + L + A+ +G E ++ +TGT+GK++ Sbjct: 2 VVDEAHFSAAVEADPDLAHTPRLVLRGLGEHLPVLAAAWHGWPGEALSLAGITGTNGKTT 61 Query: 129 VAS--FVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 A R G ++G T TTP P+ L L+ +G Sbjct: 62 TAHLLGAIASHPRGGRPHLRLGTTGNWLVDREVHAGFTTPFPVELQALLAEAHDRGARCG 121 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH L Q R ++ A + T+ +DH+D+H AY AK L L + A+ Sbjct: 122 VMEVSSHALAQGRAKPLRYRAVALTSFSQDHLDFHPDMAAYLEAKCELARRHLHVDGLAV 181 Query: 246 IYADD----------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + A + V +R A + + + V ++ Sbjct: 182 APLEQGRASEAFLAAAEAAGVERRWRTARSAAGAGAKAQLRVEAQLPLQPGEGTAVRVAT 241 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSR 354 D PL G F + N +V L + + + + L PGR E Sbjct: 242 PAGALDLRSPLVGAFNLDNLMVTVALALGLDFGLDTIADALRAATGAPGRLEAVALPGVA 301 Query: 355 GGRIYVDYAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G +YVDYAHT +++ L+ + R GR +VV GCGGDRD KRP+MG++A A Sbjct: 302 GPAVYVDYAHTPDAVARSLEALEHARRARGGRTVVVLGCGGDRDPSKRPLMGEVASRGAQ 361 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 T DNPR+EDP I ++I G + + +R AI +AI +DV+++ Sbjct: 362 RFWATSDNPRTEDPASIVDQMIAGALGPDAGGAELVREVDRARAIASAIAEAAAEDVVLI 421 Query: 465 AGKGHETVHIVTNGEKKMSVDCD 487 AGKGHE ++ K D + Sbjct: 422 AGKGHEDYQVIGE-TKIHFDDRE 443 >gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC 27678] gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC 27678] gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] Length = 521 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 107/520 (20%), Positives = 191/520 (36%), Gaps = 44/520 (8%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKED 55 L++ L+ + L + + ++ D+R ++ G +FV G D Sbjct: 17 LKEHHLLREIVHGRRWTLDASDLPGANEPVGSITYDTRKVEPGSMLFV--KGRFKPEFLD 74 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G +G A V + Y+ + + ++V++ K +SL ++ YG Sbjct: 75 GID------GKGLAAYVAETEYADRTKAIG-------IIVEDVHKAMSLLSAAFYGMPQN 121 Query: 116 -----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 I G + + +A + + F ++LTTP + Sbjct: 122 ELTVIGITGTKGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDA 181 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228 + + + G+ ++ +E SS +R+ G+ G+F N+ DHI H T + YF Sbjct: 182 FRMMREAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFR 241 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGCRVLSVGYQGKFIHLKKVCAI 285 K RL A D ++ + + G + +V Sbjct: 242 CKRRLIANSRSLVLGADCNHRDLLMQDAADAGVKVTEFALHDAARGLTSPAQVIARVDPE 301 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + + GEF V NA A + I G+ + VPGR Sbjct: 302 NKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGR 361 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV--VFGCGGDRDQGKRPIM 402 E V G +Y+D+AH S++ ++ +RT R + V G G + +R + Sbjct: 362 MERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGI 420 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458 K AL + I T D+P EDP I ++ + R AI AI + Sbjct: 421 VKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADARE 480 Query: 459 Q----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++++V GKG ET +I+ D ++R +LG Sbjct: 481 HADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 520 >gi|46204010|ref|ZP_00050625.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 198 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 86/166 (51%), Positives = 102/166 (61%), Gaps = 2/166 (1%) Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D A V LE L VPGR E +G G VDYAH +LE +L +R SGR++VV Sbjct: 30 DPAGVFAALESLTGVPGRMERIGEARGGLC-LVDYAHKPEALEHVLTALRPFASGRLVVV 88 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E G+R + Sbjct: 89 FGCGGNRDSGKRPIMGAIAARLADRVIVTDDNPRNEEPASIRAAILAAAPGAEEIGDRAQ 148 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR + L DVLVVAGKGHET IV + D D +R + Sbjct: 149 AIREGVRSLKAGDVLVVAGKGHETGQIVGD-RVLPFSDHDTVRAAI 193 >gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] Length = 521 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 106/520 (20%), Positives = 190/520 (36%), Gaps = 44/520 (8%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKED 55 L++ L+ + L + + ++ D+R ++ G +FV G D Sbjct: 17 LKEHHLLREIVHGRRWTLDASDLPGANEPVGSITYDTRKVEPGSMLFV--KGRFKPEFLD 74 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G +G A V + Y+ + + ++V++ K +SL ++ YG Sbjct: 75 GID------GKGLAAYVAETEYADRTKAIG-------IIVEDVHKAMSLLSAAFYGMPQN 121 Query: 116 -----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 I G + + +A + + F ++LTTP + Sbjct: 122 ELTVIGITGTKGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDA 181 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228 + + + G+ ++ +E SS +R+ G+ G+F N+ DHI H T + YF Sbjct: 182 FRMMREAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFR 241 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGCRVLSVGYQGKFIHLKKVCAI 285 K RL A D ++ + + G + +V Sbjct: 242 CKRRLIANSRSLVLGADCDHRDLLMQDAADAGIKVTEFALHDAARGLTSPAQVIARVDPE 301 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + + GEF V NA A + I G+ + VPGR Sbjct: 302 NKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGR 361 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402 E V G +Y+D+AH S++ ++ + RI +V G G + +R + Sbjct: 362 MERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGI 420 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458 K AL + I T D+P EDP I ++ + R AI AI + Sbjct: 421 VKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADARE 480 Query: 459 Q----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++++V GKG ET +I+ D ++R +LG Sbjct: 481 HADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 520 >gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] Length = 516 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 194/492 (39%), Gaps = 43/492 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ L+ + E+ L I E++I ++ +S+++ IFVAI G K DGH++ Sbjct: 6 MKLKTLLEDLEILEIKGNLDI------EKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIY 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I A QG A +V L + + V N+R LS + YGK E +I Sbjct: 60 IKSAKKQGCYACIVEDFVDL---------DVAQIKVKNSRAALSKVSHNYYGKPSEDLDI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176 + +T T+GK++ + +++I + +G IG I F + LTTP + L K LS Sbjct: 111 IGITATNGKTTTSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSI 170 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + V +E SS L+ R + SF+NL ++H++ H + +AY K +L E Sbjct: 171 FRERKADKVIMEVSSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITE 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + + + + + K L + + + K I+ + Sbjct: 231 AKEHQIAVLNFDNPEIKELASKTKAKVFSFSLDDSLENFSMKNLDLSTGRGKFDFIINRD 290 Query: 297 G---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 +F G V N++VA + + GID + L V RFE Sbjct: 291 IETKSGILKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFE 350 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG---- 403 + +I D+ ++++ L+ + + I ++ G+R Sbjct: 351 IIFEK--DFKIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKII 408 Query: 404 ---------KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 +I L+ + D E+ + + EA+ T I+ Sbjct: 409 EWNNKLKLSEIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETVID 468 Query: 455 MLNKQDVLVVAG 466 + K DV++ AG Sbjct: 469 IAQKDDVVMFAG 480 >gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Wolbachia endosymbiont of Cadra cautella] Length = 284 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 113/276 (40%), Positives = 163/276 (59%), Gaps = 9/276 (3%) Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 +DYH++ YF AK RLF+E+LPKE AI+ AD E++ A G +V++ G + Sbjct: 1 MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSD 60 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 I L K N Q +TI + + ++ FP+ G+FQ YN L A G+ I+ G+D + Sbjct: 61 ITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQ--RMCI 118 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +KL GR E V +VDYAHT ++L+ L +++ + +I++VFGCGG+RDQ Sbjct: 119 DKLASPSGRMEKV-----NTFAFVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQ 173 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 KR MGKIA LA IVTDDNPR EDP KIR +I+ P +E G+R +AI I + Sbjct: 174 TKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIA 233 Query: 457 -NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 ++ +L+VAGKGHE I+ G+ D ++IRE Sbjct: 234 HDENMILLVAGKGHERFQIIE-GQSLEFSDVEVIRE 268 >gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] Length = 250 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 LPG + V N LVA + +G+ + L ++ V PGR E + G Sbjct: 48 HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 105 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDN Sbjct: 106 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 164 Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 165 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 224 Query: 474 IVTNGEKKMSVDC 486 G + D Sbjct: 225 -RGGGRVRPFDDR 236 >gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 196 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 5/195 (2%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G F VYN L A A+ I + LE + V GRFE V + + VDYAHT Sbjct: 1 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAGQAFPVIVDYAHT 59 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D + I T DNPRSE+P Sbjct: 60 PDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENP 119 Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I ++I G+P ++ NR +AIR A+ DV+++AGKGHE ++ + E Sbjct: 120 HAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVID 178 Query: 483 SVDCDIIREILGLIL 497 D R + L Sbjct: 179 FDDRVEARIAIEKKL 193 >gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] Length = 256 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 LPG + V N LVA + +G+ + L ++ V PGR E + G Sbjct: 54 HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 111 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDN Sbjct: 112 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 170 Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 171 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 230 Query: 474 IVTNGEKKMSVDC 486 G + D Sbjct: 231 -RGGGRVRPFDDR 242 >gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 141 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 62/141 (43%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDD Sbjct: 1 MVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDD 60 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+E+P I +I+ G+ R EA+ AI DV+++AGKGHE IV Sbjct: 61 NPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 120 Query: 476 TNGEKKMSVDCDIIREILGLI 496 D +LG+I Sbjct: 121 GTQRLDY-SDRVTAARLLGVI 140 >gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] Length = 247 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 LPG + V N LVA + +G+ + L ++ V PGR E + G Sbjct: 45 HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 102 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDN Sbjct: 103 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 161 Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR EDP IR EI+ G +E +R +AIR A+ DV+++AGKGHET Sbjct: 162 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 221 Query: 474 IVTNGEKKMSVDC 486 G + D Sbjct: 222 -RGGGRVRPFDDR 233 >gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 535 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 102/544 (18%), Positives = 199/544 (36%), Gaps = 62/544 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + + + ++ + I +++ S+ + A +FV I G++ DGH + Sbjct: 1 MKLTDLLKSVKID-SSCHNQLKIELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHNYA 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A +QGA I+V L V ++R+ L++ +S + + NI Sbjct: 60 KHAASQGATVIIVEDFIEDIH--------VIQLKVSDSREALAILSSNFFDHPSKSMNIF 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177 VT T+GK+++ +++I + S L S IG + RLTTP L + + + Sbjct: 112 GVTATNGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFARM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +THVS+E SS L+ R+ +F N+ +HI H++ AYF+AK L Sbjct: 172 RDREITHVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIRNA 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--- 294 + + D +++ A + + I + + T++ Sbjct: 232 SKASTAIL--NLDEPLLIPLEKETEAQVITFGIENKSGTITVSDIRFSSGIPSFTVNIRK 289 Query: 295 ---------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +E FD + G +YNAL A + + + ++ V R Sbjct: 290 PFNTLSGKTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQGVERR 349 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 F+ + + D N+++ ++ I + + +V G + + Sbjct: 350 FQVLYDKEFK--VIDDLLLNQNNIDSCMETISHLDYNELHLVHAIRGSNGPAHSTEIAES 407 Query: 406 ALDLAD-----IAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 I+T D E+ + + + + Sbjct: 408 LTKWFHKMKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDTLLFG 467 Query: 453 IEMLNKQDVLVVAG---------------KG------HETVHIVTNGEKKMSVDCDIIRE 491 +E LN D+L+++G K HE + V + + + Sbjct: 468 VEQLNVADILLISGAHSMDQGARKTLELLKEIYPQVDHEKIDQVLKNKIIGMDPFKVAEK 527 Query: 492 ILGL 495 +L L Sbjct: 528 LLNL 531 >gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale ART12/1] Length = 340 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 114/327 (34%), Positives = 162/327 (49%), Gaps = 6/327 (1%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKA 173 ++ VTGT+GK+S ++ I +++G IG + TTP I L + Sbjct: 1 MRMIGVTGTNGKTSSTYMLRDILRKAGYKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQEI 60 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + Q + +V +E SSH LD +R+ G + FTNL +DH+DYH+T + Y AK +L Sbjct: 61 LDKMYKQNIDYVVMEVSSHALDMNRIAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAKL 120 Query: 234 FE----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 F+ L K + + D H + + + V + Sbjct: 121 FDSLSAPNLVKSNKNAVINLDDEFGSKTMIEHTKCNLITYGIKNDAVLKAENVEIKASGA 180 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + F + G F VYN L G+ +A I ++ E LE V GRFE V Sbjct: 181 SFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEAFEAVAGRFELV 240 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VDYAHT + LE +LK R I R+IVVFGCGGDRD+ KRPIMG+IA L Sbjct: 241 RQGQ-DFSVIVDYAHTPDGLENVLKTAREIAKKRLIVVFGCGGDRDRTKRPIMGRIAAQL 299 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI 436 AD+ I T DNPR+EDPE I +E+ G+ Sbjct: 300 ADVVIATSDNPRTEDPEFILSEVEAGV 326 >gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 138 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 4/138 (2%) Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR Sbjct: 1 YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPR 60 Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +E+P I +I+ G+ R EA+ AI DV+++AGKGHE IV Sbjct: 61 TEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQ 120 Query: 479 EKKMSVDCDIIREILGLI 496 D +LG+I Sbjct: 121 RLDY-SDRVTAARLLGVI 137 >gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 92/491 (18%), Positives = 180/491 (36%), Gaps = 41/491 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ ++ E+++ + + I ++ +S+ I +FVAI G DGH +I Sbjct: 1 MNLRKILKN--IEILDTKNFIDF---DVDIKKICYNSKFITESSLFVAIKGYITDGHKYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 QA +GA +V + P L V+NTR L+ + Y + I+ Sbjct: 56 LQAYEKGAVCAIVEDFIDCE---------IPQLKVENTRIELANVSKNFYDDPSQKLNIV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +T T+GK++ + + +I +G + IG S + LTTP + L + Sbjct: 107 GITATNGKTTTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + V++E SS + +R+ I +F N R+HID H + + Y+ AK +L +E Sbjct: 167 LKKKIEKVTMEVSSSSEELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEA 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + D + + L I + K ++ Sbjct: 227 SKNAVAILNMDFDHIKDLLTQTKARVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNI 286 Query: 298 ---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + F+ + G V N++ A + + ID ++ + + V RFE Sbjct: 287 DFNDFVLKKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVERRFE- 345 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +I D+ ++++ L+ + + +++ G+R + Sbjct: 346 -MIYDEKFKIIDDHYANVKNIDVTLETLSKMKYKNFRMLYAIRGNRGVNLNRETAEETAK 404 Query: 409 L-----ADIAIVT--------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 A T D E+ E + N ++ ++ Sbjct: 405 WLKKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVYEILKT 464 Query: 456 LNKQDVLVVAG 466 +K DV++ AG Sbjct: 465 ADKGDVVLFAG 475 >gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-208] Length = 339 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 24/338 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 4 MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + + P++ V ++++ +++ A YG + + Sbjct: 56 ASRAVELGAVAIIAEN---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 107 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233 + GV+ +E SSH L Q R+ G F NL +DH+DYH T Y NAK Sbjct: 167 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 226 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 +P + + ++ V + A + Q + + + Sbjct: 227 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 286 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + ++ + G F VYN L A A+ I Sbjct: 287 ATPVGEYTVKIKMIGNFSVYNVLAAIATSFALHIPIEK 324 >gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium breve DSM 20213] gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium breve DSM 20213] Length = 515 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 103/511 (20%), Positives = 184/511 (36%), Gaps = 30/511 (5%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L+ + + + + ++ D+R + G + + G + ++ Sbjct: 15 HHLLREIIQGDCWTDNAADLAGADEPFTAITYDTRKVTPGTL-LCCKG-RFK-ADYLTDI 71 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G A + + YS + P L+V++ RK +SL ++ YG+ + + + T Sbjct: 72 DQAGLAAYMAETEYSAVTRA-------PGLIVNDARKAMSLLSAEFYGRPQDELTVIGIT 124 Query: 124 SGKSSVASFVQQICQRS---GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 K + + G + ++ LTTP + + + + Sbjct: 125 GTKGKTTTAYFVQAVLNAYSGGRAALFSSVDNCLDGHTYAESDLTTPESMDAFRMMREAA 184 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 + G+ ++ +E SS R+ G+ AG+F N+ DHI H T + Y K ++ Sbjct: 185 NNGMRYLVMEVSSQAYKVERVYGLTFDAGAFLNISPDHISAIEHPTFEDYLYCKRQITHN 244 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 A D ++ L + + Sbjct: 245 CRTLVLGADCDHADLIRQDAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQG 304 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 DF L GEF NA A L A+G+ + + +PGR E S Sbjct: 305 KAIGDFSLELEGEFNAANAAAAIALSRAVGVPAGSEAFRALEHVHIPGRME--HYESGNM 362 Query: 357 RIYVDYAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 YVDYAH S + + + + R++VV G GD+ +R + K A D AD Sbjct: 363 VAYVDYAHNYVSTKTLAEFVTHKYADRNPRVVVVTGSVGDKAVDRREGIIKGAQDYADRI 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ-D---VLVVA 465 I+T ++ E I E+ I +R +AI A+E + D +L+V Sbjct: 423 ILTAEDTVHERMIDILHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLVI 482 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKG E V D +++ + GL+ Sbjct: 483 GKGEERWIKVDGKHAPYEGDDHVVKRLFGLL 513 >gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] Length = 455 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 97/459 (21%), Positives = 181/459 (39%), Gaps = 43/459 (9%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + + V +DSR ++AG +FVA+ G+K DGH FI +A +GA +V Sbjct: 15 GRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAIVE---- 70 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 +F A + +++V NT + L + ++ +TG++GK+S + Sbjct: 71 --EFPAELPPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDLTASVLG 128 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + + G + I + + + + ++ A G+ Sbjct: 129 ENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPEVGI--- 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 TN+G HI++ +++A K L E LP I+ A+D +S + Sbjct: 186 -----------ITNIGMAHIEFLGSREAIAQEKGML-AEALPPSGTLILSAEDEFSPAIA 233 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R V+ G + + + + TI+ EG+ +PGE V NA++ Sbjct: 234 AR---TKADVVLAGINKGEVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAML 290 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A A G+ L KL + GR E G ++ D Y +S+ L+ + Sbjct: 291 AVAAGRAFGLSLEECAAGLSKLRLTKGRLEQKMIR--GIQVIDDTYNANPDSVAAALRTL 348 Query: 377 RTIT-SGRIIVVFGCGG----DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRA 430 ++ GR I V G G + ++G R ++G++A D I E+ + I Sbjct: 349 ASMPAVGRRIAVLGRMGELGVEAERGHR-LVGEVAAQTHVDSVI-----GVGEEAQWITE 402 Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+ + + EA + ++ D++++ KG Sbjct: 403 AAWRGGVEKVVRVESTEEATKVLRDLAKAGDLVLI--KG 439 >gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 256 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 121/245 (49%), Positives = 156/245 (63%), Gaps = 13/245 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSRH+ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S + P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 VDAAGRGAAVAIASQPVDA---------SIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLP 248 Query: 240 KESPA 244 K +PA Sbjct: 249 KGAPA 253 >gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] Length = 580 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 109/526 (20%), Positives = 195/526 (37%), Gaps = 64/526 (12%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + + IN + S+S + Q IFV G ++ A+ +GA A + + ++ Sbjct: 49 NNKITAAADSLINGLDSNSLYSQKHHIFVC-KGAAFKP-EYLQDALKKGATAYMCDNTHA 106 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-- 136 T + +VV+N R ++ A +G ++ V T K + Sbjct: 107 QA--LRTYCPHAVQIVVNNIRLAMAQAAPLAWGHPDTRLITVGITGTKGKTTTACMIKSI 164 Query: 137 -----CQRSGLSSFQIGPTSTISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ +S P + S +++ TTP + L + G+TH Sbjct: 165 LDARAQRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITH 224 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + +E SS L HR+DG+ L F N+ DHI + L + ++ + A Sbjct: 225 MVMEISSQALKHHRVDGLHLDVALFLNISPDHISK---VEHPTFEDYFLSKLMIFSMANA 281 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------------------- 285 + DA E + +A +L G L+ Sbjct: 282 AVMNLDADHFEAIYAHAHACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTL 341 Query: 286 ----------------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + DF PL G F V NAL A + +++ Sbjct: 342 PADIAAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNT 401 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388 + + + L V GR EF+ T+++ + VDYAH S ++ +II +F Sbjct: 402 SDIQQGLAN-THVAGRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALF 460 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445 G G + +R + + A AD ++T+++P E + I E+ +P + + NR Sbjct: 461 GAPGGKAFDRRRDLVEEAAKWADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIECNR 520 Query: 446 IEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 AI A+E+ + ++ + GKG ET + D DI Sbjct: 521 AAAIEKAVELANCSQAKTLICMLGKGDETTQHEQDRYVSCLPDKDI 566 >gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 513 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 104/475 (21%), Positives = 190/475 (40%), Gaps = 37/475 (7%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 E M ++ V+SDSR ++ G++FVAI G + DG+ +I +AI +GA I Sbjct: 9 IETAKAQGDEKMNIDGVEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGAVII 68 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 I + N RK L+ + Y E I + +TGT+GK++ Sbjct: 69 YTEHRI--------TALGVMIKICSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTT 120 Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + SG+S IG I++ LTTPS + L+ + Q V V +E Sbjct: 121 SHIIYHALKESGVSVGLIGTLDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVME 180 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL R+ GIK TN+ RDH++YH+ Y +K +LF+ L A++ Sbjct: 181 VSSHGLKSERVHGIKFDIAIHTNIERDHLNYHKNMGDYIRSKKKLFDC-LSPGKVALLNL 239 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---------- 298 DD +S E++ + + + ++ + Sbjct: 240 DDNHSLELLTGNNGLIVVTYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPF 299 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ F L G+ +YN+L A C+ + + + ++++ V R E + G + Sbjct: 300 EYPFSINLLGKHNIYNSLAAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVIYKK--GYTV 357 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----A 413 D++H S + ++++ + + V+ G R + ++ Sbjct: 358 IDDFSHNPASYGAVFESMQNLEYKNLHVINAIRGSRGADINQENADVLKIWYELLGMKTL 417 Query: 414 IVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 ++T D + E+ + G F + +AI T I + + D Sbjct: 418 MITSSKDKTGKLDEVQVEEIGAFFKVLSEGSVNFEYVDHLSDAIETIIPRIEEGD 472 >gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM 7454] gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM 7454] Length = 371 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 161/383 (42%), Gaps = 19/383 (4%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175 ++ VTGT+GK++ A+ + + + G IG + TTP L + L Sbjct: 1 MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + + +E SSHGL R GI G FTNL +H+D+H+T YF AK Sbjct: 61 EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAK----- 115 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +L S + D + K + K + + + T++ Sbjct: 116 MILLNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSKY--RAKNIKRVDLGLEFTVNG 173 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F G + +YN+L A + +G + + LE V RFEF+ N G Sbjct: 174 ----VKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFI-ENKLG 228 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I VD+AHT + E + K++ +I V+G GDR R +GKI+ +++ Sbjct: 229 INIVVDFAHTPEAFENLFKDLPK--DKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVI 286 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T D+P+ + E I +I G+ I +R EAI+ I K D + + GKG E Sbjct: 287 TTDDPKFDTFENISQQIKEGVDENKGESIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEK 346 Query: 472 VHIVTNGEKKMSVDCDIIREILG 494 K + + IRE+L Sbjct: 347 FLKFNANIKTYYNEKETIREVLE 369 >gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 170 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R + +G + + VDYAHT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M Sbjct: 13 RMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAG 71 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461 + LAD VTDDNPRSE P I +I G R +AI I + DV Sbjct: 72 VVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASASADDV 131 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +V+AGKGHE + NG+++ D L + Sbjct: 132 VVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 164 >gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 201 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 8/193 (4%) Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL GE+ V NAL A+ + ++ D+ ++ + LE VPGR E G +DYAH Sbjct: 1 PLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVED-GPVCIIDYAH 59 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE +L ++ + +GR+ +VFG GG+R + RPI+G IA AD +VT DNPRSED Sbjct: 60 TPDALEKVLSTVKPLCNGRLWLVFGHGGERFKENRPILGSIAARFADRIVVTMDNPRSED 119 Query: 425 PEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P I +I GI + +R EA+ A++ K DV++V GKG E I+ Sbjct: 120 PRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPER-QIIFKD 178 Query: 479 EKKMSVDCDIIRE 491 D + ++E Sbjct: 179 RTIPYNDFEALKE 191 >gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bifidobacterium adolescentis ATCC 15703] Length = 517 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 88/510 (17%), Positives = 176/510 (34%), Gaps = 30/510 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + + L ++ + + ++ D+R ++ G F+ G + ++ Sbjct: 17 LLREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQGIDE 73 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + P L+VD+ RK ++L ++ YG+ + + V T Sbjct: 74 RGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGT 126 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + +G S + S+ ++ LTTP + + + Sbjct: 127 KGKTTTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDN 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS R+ G+ +F N+ DH H T + Y + K ++ + Sbjct: 187 GMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCR 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A D ++ + L + V Sbjct: 247 ALVLGADCARADLIRQDARHTSVPVTTFALGGDSMADVMAAPANDDHSRFSIVIDGTSIG 306 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356 + + A VA SA + L ++ V GR E Sbjct: 307 ELSLTLDGDFNYANAAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNT 366 Query: 357 RIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAH S+ +L + I ++ G G++ +R + A D D Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHL 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ----DVLVVA 465 ++T ++ E E++ A++ + +R EA+ T + K ++++ Sbjct: 427 VLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILII 486 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKG+E D I+ + L Sbjct: 487 GKGNERWFKDHGKHIPYEGDDRIVERVFRL 516 >gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] Length = 463 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 87/483 (18%), Positives = 174/483 (36%), Gaps = 46/483 (9%) Query: 1 MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK++++I + ++ + + ++ + + VS+D+R IQ G ++V + G K +GH Sbjct: 1 MKVKEMITRTLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHA 60 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F+ AI +GA A++ + T + P+++VD+T + L A R + ++ Sbjct: 61 FVQDAIDKGASAVLW------AETEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVI 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG++GK++ + + + G + P+ L Sbjct: 115 GITGSNGKTTTKDMIAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEE 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V + S+ G + + + A TN+G H+ +++ AK+ + L Sbjct: 162 DTEMAVVEMGMSNFGEIELLSNIAEPDAAVITNIGESHLQELGSREGIAQAKLEILSGLK 221 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 D VL G + K + + Sbjct: 222 KNGLFVYH--GDEPLLVNRVPDLPLPEHVLRFGQGSDNDYYPKAVHVQANGTTFTVHQAP 279 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + F P+ G+ VYNAL A + + + E +L V R E + T I Sbjct: 280 NRSFFLPILGKHHVYNALAAIAVARFFHVSWEKIQEAFSQLQVTRMRMELIETKKGWTII 339 Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIA 413 Y S++ L+ + +T + I V G GD++ +G + ++ D Sbjct: 340 NDAYNANPTSMKAALQLLHELTGYEKKIAVLGDMLELGDQEVEFHREIGAMLRPEMVDYV 399 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------KQDVLVV-A 465 + I F R++A + DV+++ A Sbjct: 400 F---------TYGALARHIALAAQPFF-PDGRVKAYEDKQSLAKDLLAVVSSGDVILLKA 449 Query: 466 GKG 468 +G Sbjct: 450 SRG 452 >gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 502 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 104/331 (31%), Positives = 144/331 (43%), Gaps = 10/331 (3%) Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + L+ + + V++E SSHGL HR+DG G FTNL RDH+D+H AYF Sbjct: 171 VELQQTLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYF 230 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK RLFE A D + S H V A Sbjct: 231 AAKARLFEP---GRCAAAAVGVDDEFGRRLAATVTVPRVTFSSRTTAADFHASAVHADEG 287 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ G L G QV NAL A G+D + +E VPGR E Sbjct: 288 GTSFTLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVPGRLE 347 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V +VDY H + +R++T GR+I V G G+RD GKR +G A Sbjct: 348 AVDAGQ-PFLAFVDYMHNPAGQRRLFPYLRSLTRGRVIAVVGATGERDPGKRVPLGATAA 406 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVL 462 AD IVTD++P S+D +++R ++ G + +R EAI A+ + DV+ Sbjct: 407 RFADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTLAAPGDVV 466 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 VVAG+GH+ V + D + E L Sbjct: 467 VVAGRGHDRVQAYGPRRRV-FDDRIALHEAL 496 >gi|225377873|ref|ZP_03755094.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM 16841] gi|225210311|gb|EEG92665.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM 16841] Length = 195 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 11/160 (6%) Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR + T G +DYAH SL +L+ +R R+IV+FGCGG+R +R M Sbjct: 29 PGRCQ-NMTAGTGYVFLIDYAHNEMSLRNLLETLRKFKPARLIVIFGCGGNRSVLRRYQM 87 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------PGFIEKGNRIEAIRTAI 453 G+ A LAD I+T DNPR EDPE+I +I G+ P +I+ +R A+ A+ Sbjct: 88 GETAGRLADFTIITSDNPRWEDPERIMNQIEDGLRGAVCAGEKPSYIKISDRRAAVEYAV 147 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 M K+D++V+AGKGHE+ + G + D I++E L Sbjct: 148 SMAEKRDIIVLAGKGHESYQEIK-GIRYPLDDRKIVQEAL 186 >gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis L2-32] gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis L2-32] Length = 517 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 88/510 (17%), Positives = 176/510 (34%), Gaps = 30/510 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + + L ++ + + ++ D+R ++ G F+ G + ++ Sbjct: 17 LLREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQGIDE 73 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + P L+VD+ RK ++L ++ YG+ + + V T Sbjct: 74 RGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGT 126 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + +G S + S+ ++ LTTP + + + Sbjct: 127 KGKTTTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDN 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS R+ G+ +F N+ DH H T + Y + K ++ + Sbjct: 187 GMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCR 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A D ++ + L + V Sbjct: 247 ALVLGADCARADLIRQDARHASVPVTTFALGGDSTADVMAAPANDDHSRFSIVIDGASIG 306 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356 + + A VA SA + L ++ V GR E Sbjct: 307 ELSLTLDGDFNYANTAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNT 366 Query: 357 RIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAH S+ +L + I ++ G G++ +R + A D D Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHL 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ----DVLVVA 465 ++T ++ E E++ A++ + +R EA+ T + K ++++ Sbjct: 427 VLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILII 486 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKG+E D I+ + L Sbjct: 487 GKGNERWFKDHGKHIPYEGDDRIVERVFRL 516 >gi|58700141|ref|ZP_00374655.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533343|gb|EAL57828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 213 Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 12/204 (5%) Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q +T+ ++ + ++ FP+ G+FQ YN L A G+ + +EKL PGR E Sbjct: 16 QHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEK 70 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ KR MGKIA Sbjct: 71 VKP-----FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQM 125 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467 AD I+TDDN R EDP KIR +I+ P +E G R EAI +++ N+ +L+VAGK Sbjct: 126 YADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGK 185 Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491 G+E I+ N D ++I+ Sbjct: 186 GNEKFQIIGNQT-FEFSDVEVIKN 208 >gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase [Bifidobacterium bifidum S17] gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase [Bifidobacterium bifidum S17] Length = 543 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + L ++ + + ++ D+R ++ G + + G + ++ Sbjct: 41 LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 97 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + + P L+V++ RK +SL ++ YG+ + + V T Sbjct: 98 RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 150 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + + S + S+ ++ LTTP + + + + Sbjct: 151 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 210 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 211 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSH 270 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295 A D ++ L G V A + + Sbjct: 271 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAA 330 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +F + A +A I + + H + + GR E Sbjct: 331 DGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 390 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 VDYAH S+ +L + RI +V G G++ +R + + A Sbjct: 391 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 450 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461 D I T ++ +E I E+ I +R A+ AI ++ ++ Sbjct: 451 IDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNI 510 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG E N D I+ + Sbjct: 511 ILIIGKGDERWIKEHNKHVPFEGDDRIVERMF 542 >gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] Length = 463 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 84/469 (17%), Positives = 164/469 (34%), Gaps = 34/469 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+D+ ++++ ++ ER++ ++++DSR ++ G +F+AI G + DGH +I Sbjct: 1 MKLRDIKEGTNGKILSGSTL----DLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA+A+V+S S I + L VD+T L A+ K P + + Sbjct: 57 QDAVSRGAQALVLSR-----TPSIQIPESVLALEVDDTVLALGKLAAYWRNKMPAKTIGI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S I R ++ + L Sbjct: 112 TGSVGKTSTKEVTASILSRKFVTLRSQKSYNN-------------EIGLPLTLLGLTPEV 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + + L I + LP Sbjct: 159 EVAVLEMGGAYRMGEIEYLCSIAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSLPS 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E AI+ D + + M A + + V N + + + + + Sbjct: 219 EGFAIL-NRDDHRVKAMADVTKAHVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSY 277 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G V+ L + + +G++ ++ +++L R + + Sbjct: 278 QVKAPLLGRHSVHTILASVAVAHVMGMEDQEIVHAIKELPPG-LRLIVNKGINGSTILDD 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y S+ L + I RI V+ G + +G A ++ D Sbjct: 337 TYNANPTSMLAALNLLNDIEGHRIAVLGDMAELGHFTEEGHLKVGARAAEVCDKLYTV-- 394 Query: 419 NPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + I + G+ + + EAI L++ DV++V Sbjct: 395 ---GELAQIIARGALQAGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLV 440 >gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 492 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 189/457 (41%), Gaps = 32/457 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S S I+ GW+FVAI G DG+ + +A+ GA+A+V + L + P Sbjct: 13 GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAPDRLPPLA------IP 66 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + VV + R+ L+ A+ Y N++ VTG++GK++VA ++ I + +G IG Sbjct: 67 VAVVPDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGT 126 Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + +RLTTP L + L+ + GVTH ++E S+ G++ R+D + G Sbjct: 127 VRVNVGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGI 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D+H T Y AK R L P DD + + + A V Sbjct: 187 LTNICADHLDFHHTFADYLAAKERFLTLLGPSPLVVNR--DDDHCRRMAALAGGPVIAVS 244 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTIS-------VEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + A +K ++T S + PL G V NAL+AA Sbjct: 245 LTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAA 304 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + GI + V R E G + D A S++ + I T Sbjct: 305 GLLHGISPDEIAAAFSSFQGVERRLEIYRCG--GFTVIDDTALNPGSIDAVFATITTFRY 362 Query: 382 GRIIVVFGCGGDRDQGKRPI----MGKIALDLADIAIVT--------DDNPRSEDPEKIR 429 R++VV G R + M + L IVT D +E+ + Sbjct: 363 RRLVVVNAIRGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADTVTAEERQAFL 422 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 E+ F + AI++A++ L D+LV+ G Sbjct: 423 GELSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLG 459 >gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 96/480 (20%), Positives = 180/480 (37%), Gaps = 38/480 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + +++ I +S+DSR ++ +F+ + G K DG F+ AI Sbjct: 3 ELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++ + L++ + ++ V+ T + L AS K +AVTG+S Sbjct: 61 DKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + RL I + FTN+G HI+ +++ AK L E + Sbjct: 165 VEMGMSGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD + K + G + I + + T+ + + + Sbjct: 224 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEIK 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG VYN+L A + + GI+ + E L+ R + V Y Sbjct: 280 LSIPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDDV-YN 338 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419 +S++ L +R + + R I V G G+ +GK +A DI I + D Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398 Query: 420 PRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + I E G+ E +++ + D ++V G +G + IV Sbjct: 399 SKY-----IAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453 >gi|94269093|ref|ZP_01291368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium MLMS-1] gi|93451353|gb|EAT02221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium MLMS-1] Length = 326 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 22/250 (8%) Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R+ G+ + L + N + ++ +++ PL G+F + N L A +A+ Sbjct: 72 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 131 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 + + L PGR E + RG +++VDYAHT +LE +L+ +R + R+I Sbjct: 132 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 189 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437 V+FGCGGDRD+GKR MG+IA LADI ++T DNPR+E+P I A I G+ Sbjct: 190 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILATIEAGVKGTGLQRCR 249 Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G+ +R AI I + DV+V+ GKGHET + + + D Sbjct: 250 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 308 Query: 487 DIIREILGLI 496 + E L ++ Sbjct: 309 REVAEGLAVV 318 >gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] Length = 519 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + L ++ + + ++ D+R ++ G + + G + ++ Sbjct: 17 LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 73 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + + P L+V++ RK +SL ++ YG+ + + V T Sbjct: 74 RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 126 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + + S + S+ ++ LTTP + + + + Sbjct: 127 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 187 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSR 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295 A D ++ L G V A + + Sbjct: 247 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAA 306 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +F + A +A I + + H + + GR E Sbjct: 307 DGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 366 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 VDYAH S+ +L + RI +V G G++ +R + + A Sbjct: 367 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 426 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461 D I T ++ +E I E+ I +R A+ AI ++ ++ Sbjct: 427 IDSFIFTAEDTDTEPFIDICTEMQRYITVPGIASTVISDRPTAVTNAIYDARAHADRFNI 486 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG E N D I+ + Sbjct: 487 ILIIGKGDERWIKDHNKHVPFEGDDRIVERMF 518 >gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 461 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 91/478 (19%), Positives = 178/478 (37%), Gaps = 34/478 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + ++ K+ +S+DSR ++ +F+ + G K DG F+ AI Sbjct: 3 ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++ + L + + ++ V+ T + L AS K +AVTG+S Sbjct: 61 DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSS 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + G + + +K FTN+G HI+ +++ AK L E+ + Sbjct: 165 VEMGMNGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD + K + G + I + + T+ + + + Sbjct: 225 LNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEIKL 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +PG VYN+L A + + GI+ + E L+ R + V Y Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIEKGDIKIIDDV-YNA 339 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ L +R + + R I V G G+ +GK+ D ++T N Sbjct: 340 NPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGN-- 397 Query: 422 SEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + I E G+ E +++ + D ++V G +G + IV Sbjct: 398 --MSKYIAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453 >gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 90/474 (18%), Positives = 179/474 (37%), Gaps = 38/474 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + ++ + ++ VS+D+R IQ G ++V + G K DGH F+ A Sbjct: 1 MITRTLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A++ S + + ++ P++VVD+T + L A R + ++ +TG+ Sbjct: 61 LDKGASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V + + G + P+ L + Sbjct: 115 NGKTTTKDIVAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEEDVEMA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S+ G + + + A TN+G H+ +++ AK+ + L Sbjct: 162 VVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D VL+ G K + + + + + + F Sbjct: 222 VY--NGDEPLLASRVAHLPLPEHVLTFGQGNKNDYYPESVHLQANGMMFTIRQAANRSFF 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL A + + V E L +L V R E + T I Y Sbjct: 280 LPILGKHHVYNALAALAVARFFDVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDD 418 S++ L+ ++ +T + + V G GDR+ +G + ++ D Sbjct: 340 ANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGK 399 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 R I P + R A + + +++ DV+++ A +G Sbjct: 400 LARH-----IALAAQPFFPDGRVNAYEDKRALA-KDLLAVVSPGDVILLKASRG 447 >gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 110/473 (23%), Positives = 183/473 (38%), Gaps = 30/473 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + E+ + ++ VS+DSR ++ G +FV +VG K DGH FI A GA Sbjct: 5 TYEEVAKATGGRVEKSFSGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNAFEAGAS 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A + A +D + P++ VD+T+ L A +A+TG+ GK++ Sbjct: 65 ATLC--AEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVGKTTT 122 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + R G + I L L L V V + Sbjct: 123 KEMIAAVLTRRYRVLKNEGNFNNE--------------IGLPLTLFRLEDHQVGVVEMGM 168 Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + RL I K TN+G HI+ +++ AK+ + E L + + Sbjct: 169 SGFG-EISRLSAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVL--- 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLP 307 +A S E+ + R + G + I + ++ ++ + +F PL Sbjct: 225 -NADSPELYAKRGTLTPRTVYFGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLA 283 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G VYNAL A + + G+ + L +L R EF T I Y + + Sbjct: 284 GTHNVYNALAAIAVGLEFGLSIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPD 343 Query: 368 SLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S++ L +R + GR + + G GD +G+ A DI I ++ +E Sbjct: 344 SMKAALNVLRELGEGRRKVAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNH--AE 401 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 D K E G EAI E++ D+++V A +G + IV Sbjct: 402 DLAKGATEAGLGPRFIHTFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIV 454 >gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 96/480 (20%), Positives = 180/480 (37%), Gaps = 38/480 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + +++ I +S+DSR ++ +F+ + G K DG F+ AI Sbjct: 3 ELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++ + L++ + ++ V+ T + L AS K +AVTG+S Sbjct: 61 DKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + RL I + FTN+G HI+ +++ AK L E + Sbjct: 165 VEMGMSGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD + K + G + I + + T+ + + + Sbjct: 224 VLNADDD----MLSKIPLKYSSKYYRYGIKSGEIKACDIKKGEKDIKYTLKYKDLEKEIK 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG VYN+L A + + GI+ + E L+ R + V Y Sbjct: 280 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIEKGDMKIIDDV-YN 338 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419 +S++ L +R + + R I V G G+ +GK +A DI I + D Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398 Query: 420 PRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + I E G+ E +++ + D ++V G +G + IV Sbjct: 399 SKY-----IAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453 >gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] Length = 458 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 180/474 (37%), Gaps = 38/474 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + ++ + ++ VS+D+R IQ G ++V + G K DGH F+ A Sbjct: 1 MITRTLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A++ S + + ++ P++VVD+T + L A R + ++ +TG+ Sbjct: 61 LDKGASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V + + G + P+ L + Sbjct: 115 NGKTTTKDIVAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEEDVEMA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S+ G + + + A TN+G H+ +++ AK+ + L Sbjct: 162 VVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D VL+ G K + + + + + + F Sbjct: 222 VY--NGDEPLLASRVAHLPLPEHVLTFGQGNKNDYYPESVHLQANGMMFTIRQAANRSFF 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL A + G+ V E L +L V R E + T I Y Sbjct: 280 LPILGKHHVYNALAALAVARFFGVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDD 418 S++ L+ ++ +T + + V G GDR+ +G + ++ D Sbjct: 340 ANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGK 399 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 R I P + R A + + +++ DV+++ A +G Sbjct: 400 LARH-----IALAAQPFFPDGRVNAYEDKRALA-KDLLAVVSPGDVILLKASRG 447 >gi|303232214|ref|ZP_07318915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Atopobium vaginae PB189-T1-4] gi|302481692|gb|EFL44751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Atopobium vaginae PB189-T1-4] Length = 652 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 105/530 (19%), Positives = 167/530 (31%), Gaps = 74/530 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ---------GAEAIVVSSAYS 78 I + +S+ IF A G A GA + + + Sbjct: 92 TPITGIDCNSQVAAPQHIF-ACKGA----------AFKAAYLAQALAQGACCYMCEANKA 140 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + A LVV + R +++ + +G+ + + + T K + Sbjct: 141 RELADAC--PGATQLVVTDIRHAMAVCSPIAWGRPDKQLCCIGVTGTKGKSTTTYMLRSI 198 Query: 139 RSGL-------------SSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTH 184 IG ST F + TTP L + L ++ + + Sbjct: 199 LEAHCAARGITSTHGASPVGIIGSISTYDGFINEKSTNTTPEAPDLWRHLHNAAAAKLAY 258 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + +E SS L R+ G+ L A +F N+ RDHI + +L K S Sbjct: 259 MVLEISSQALKYERVYGLHLYASAFLNISRDHISPVEHPTFEDYFASKLTIFSYAKHSVV 318 Query: 245 I----IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A A + H V A + E K Sbjct: 319 NLNSKHAARIANTACSCSDTHFCMVDVPKNDASADSAQADDARADSAQADEFTREELKAL 378 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDS---------------------------ALVL 333 +P V A + ++ + Sbjct: 379 LNQYPCTRATDVTCARGGFAMRVSGMAQPVYIPMHGSFNAQNALVALTLARLVGVGDDAI 438 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG 392 VPGR EF+ T VDYAH S + +IR S RI VFGC G Sbjct: 439 VKGIAHTRVPGRMEFIPTTHPRIHGIVDYAHNRLSFQTFFASIRREFPSARIYAVFGCPG 498 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAI 449 ++ +R + +IA AD I+T D+P SED I E+ +P + + NR +AI Sbjct: 499 NKAFERRRDLPEIAGAYADEIILTKDDPGSEDTRTICEEMASHLPAHARYCIEPNRAQAI 558 Query: 450 RTAIE---MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 A+ V+ + GKGHE +G D + + + + Sbjct: 559 FDAVTDAHRAQVDSVICMLGKGHENTQHEAHGYSSYPSDARVYADAIAAV 608 >gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] Length = 460 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 32/477 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + ++ K+ +S+DSR ++ +F+ + G K DG F+ AI Sbjct: 2 ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++ + L + + ++ V+ T + L AS K +AVTG+S Sbjct: 60 DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + + Sbjct: 117 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 163 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + + G + RL I + FTN+G HI+ +++ AK L E + Sbjct: 164 VEMGMNGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD + K + G + I + + T+ + + Sbjct: 223 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIK 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG VYN+L A + + GI+ + E L+ R + V Y Sbjct: 279 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YN 337 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419 +S++ L +R + + R I V G G+ +GK +A DI I + D Sbjct: 338 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + E + E +++ + D ++V G +G + IV Sbjct: 398 SKYIAEESKVCGMKEN--NIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 452 >gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium bifidum PRL2010] gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium bifidum PRL2010] Length = 519 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + L ++ + + ++ D+R ++ G + + G + ++ Sbjct: 17 LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 73 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + + P L+V++ RK +SL ++ YG+ + + V T Sbjct: 74 RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 126 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + + S + S+ ++ LTTP + + + + Sbjct: 127 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238 G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 187 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVCNSR 246 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295 A D ++ L G V A + + Sbjct: 247 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEHSAYRIAA 306 Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +F + A +A I + + H + + GR E Sbjct: 307 GGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 366 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 VDYAH S+ +L + RI +V G G++ +R + + A Sbjct: 367 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 426 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461 D I T ++ +E I E+ I +R A+ AI ++ ++ Sbjct: 427 IDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNI 486 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG E N D I+ + Sbjct: 487 ILIIGKGDERWIKDHNKHVPFEGDDRIVERMF 518 >gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 32/477 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + ++ K+ +S+DSR ++ +F+ + G K DG F+ AI Sbjct: 3 ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++ + L + + ++ V+ T + L AS K +AVTG+S Sbjct: 61 DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + + G + RL I + FTN+G HI+ +++ AK L E + Sbjct: 165 VEMGMNGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD + K + G + I + + T+ + + Sbjct: 224 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIK 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG VYN+L A + + GI+ + E L+ R + V Y Sbjct: 280 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YN 338 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419 +S++ L +R + + R I V G G+ +GK +A DI I + D Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + E + E +++ + D ++V G +G + IV Sbjct: 399 SKYIAEESKVCGMKEN--NIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453 >gi|58699992|ref|ZP_00374557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533489|gb|EAL57923.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 218 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 12/215 (5%) Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 + + HN Q +T+ ++ + ++ FP+ G+FQ YN L A G+ + +E Sbjct: 10 YFIRANINHNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVE 64 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL PGR E V +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ Sbjct: 65 KLVSPPGRMEKVKP-----FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQT 119 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML- 456 KR MGKIA AD I+TDDN R EDP KIR +I+ P +E G R EAI +++ Sbjct: 120 KRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAY 179 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 N+ +L+VAGKG+E I+ N D ++I+ Sbjct: 180 NEGMILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 213 >gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] Length = 509 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 102/504 (20%), Positives = 205/504 (40%), Gaps = 49/504 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++++ E+I+ + + +I+ +S +S +I+A +FVAI G DGH +I Sbjct: 1 MKLREILKD--IEIIDIRGKIDL---DTEISNMSYNSINIEASGLFVAIKGKITDGHKYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A GA VV + P + VDNTRK L+ A Y + ++ Sbjct: 56 KNAKNHGAIVAVVEDFKEVY---------IPQIKVDNTRKSLADLAKNFYKDPSKDLKVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 +T T+GK++ + +++I + +++ IG T + + LTTP + L K + Sbjct: 107 GITATNGKTTTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + ++HV +E SS R++ I SF NL R+HID H + + YF Sbjct: 167 LDKNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFR-DKSKIILN 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--------IHLKKVCAIHNKQ 289 K S A++ D+ Y + ++ + + F K N+ Sbjct: 226 AKKGSFALLNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRD 285 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 I+++ + F+ G V N ++A L + + +D ++L LE V RFE + Sbjct: 286 IKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFELI 345 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 ++ D+ ++++ + + + + +++ G+R + + Sbjct: 346 YDE--KFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLCFW 403 Query: 410 ADIA----IVTD--------DNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML 456 + T + +++ + + AE++ + + I ++ Sbjct: 404 LKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKKA 463 Query: 457 NKQDVLVVAG-----KGH---ETV 472 D++++AG KG E Sbjct: 464 QSGDIVLLAGCQGMDKGAKFVEKY 487 >gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 442 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 153/453 (33%), Gaps = 36/453 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + I S DSR+++ G +FV + G+K DGH FI +AI GA +V+ L Sbjct: 2 GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRH 61 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + ++ V++T L A + K +++AVTG+ GK++ + + Sbjct: 62 SVHPP--LVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSI 119 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ++ I L L L+ V ++ + RL + Sbjct: 120 LKTHGNLNSE--------------IGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELA 165 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + E L AI+ DD + + + + Sbjct: 166 RPNVGVITRIAESHIEKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGE 225 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + V +K I K PL G+ + NAL A + Sbjct: 226 VL---YYGLTDGDLSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGR 282 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G+D + LE R + I Y S + + R Sbjct: 283 VFGLDLTQSIRALEGFTGTSMRNQIKYHKDM-IIIDDTYNANVQSTLAAFDVLTNLPLNR 341 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS--EDPEKIRAEIIHGIP 437 I V G GD + +G+ A D I + ++ E +K+ G+P Sbjct: 342 RIAVLGDMFELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKL------GMP 395 Query: 438 GF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I +R +AI+ ++++ D ++V KG Sbjct: 396 EHQNIHVADREQAIQRILQIVKSGDGILV--KG 426 >gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] Length = 464 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 97/476 (20%), Positives = 171/476 (35%), Gaps = 43/476 (9%) Query: 1 MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL ++I +LI R IN VS+DSR ++ G +F+A++G + DGH Sbjct: 1 MKLTVSEVIEATGGQLIAGDKW-------RIINGVSTDSRTVKPGQLFIALIGERYDGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A+ GA A+++S T + PI+ V++T + L A+ ++ Sbjct: 54 FIDNAVTNGASAVMLSKD--------TADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+TG+SGK++ F+ + + G + LT Sbjct: 106 AITGSSGKTTTKEFIYAVLSQKYNVLKNRGNLNNQ----IGLPLTVFDI---------NP 152 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + S+ G D + G TN+G HI+ QQ AK+ LF+ Sbjct: 153 HHQYAVLEMGMSALGEIHDLADIARPHIGVITNIGLSHIEKLGNQQNILRAKLELFDFF- 211 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A++ DD + + G + ++ + +G+ Sbjct: 212 GDNDVAVLNGDDPLLCTLHSVLPCRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQ 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + G VYN+L A + + + + +E L+ P R I Sbjct: 272 REDIYLNIAGFHNVYNSLAAVLVGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQLI 331 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 Y +S+ ++ + + S R I V G G + +G+I +V Sbjct: 332 DDTYNANPDSMRAAIEVLCDLDSARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLV 391 Query: 416 TDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 T I G+ + +AI E + D +++ KG Sbjct: 392 TV----GRLAHFIADGAEASGMDAHNIYRFNSNDDAISWLDEHITHGDAILI--KG 441 >gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 98/487 (20%), Positives = 183/487 (37%), Gaps = 49/487 (10%) Query: 1 MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L ++++ +L++ ++ +S+DSR I+ G +F+ + G + +G Sbjct: 1 MILTVKEILDATEGKLLSG-------DINICVSGISTDSRTIKPGDLFIPLKGERFNGEK 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A+ G A + S ++ N PI+ V++T+ L A K + Sbjct: 54 FIDDALNVG-SASLTESTNCIRH------DNKPIIFVEDTKDALHRIAKYYRSKFNIPFI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG+SGK++ + + IG + P+ L Sbjct: 107 AVTGSSGKTTTKDMIYDVLSMKYNVLKTIGNFN----------NEIGLPLTLFTLNDD-- 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V + S G + RL I +TN+G HI+ +++ AK L E+ Sbjct: 155 -HDMAVVEMGMSGFG-EIRRLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDF 212 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 ++ I DD ++K G + ++ G I + + + ++G Sbjct: 213 KNGDTVVINADDD----MLIKMLEKKGPKFVTYGINNGDIKAFDIELNEESSKYKVLIDG 268 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D +PG+ +YN+L A + I ++ + + L K R + Sbjct: 269 YVLDVELNVPGKHNIYNSLAAICIGIQFDVNKEDIRKALAKFQPSAMRLNIIDVAGIKII 328 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413 V Y +S++ L + T R + V G + +D R +G+ + Sbjct: 329 NDV-YNANPSSMKAALSVLGGYTERRKVAVLGNMLELGQYKDIAHR-EVGEYVKENDIDV 386 Query: 414 IVTDDNPRSEDPEKIRA-EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH 469 ++T + KI I G+ N EAI ++ + D+ +V G +G Sbjct: 387 LITVGDY----ALKIADGAIEKGMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGM 442 Query: 470 ETVHIVT 476 E IV Sbjct: 443 EMEEIVK 449 >gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] Length = 457 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 96/475 (20%), Positives = 174/475 (36%), Gaps = 46/475 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L E + E KI ++ DSR ++ +F+AI+G DGH FI A+ Sbjct: 4 LTLAQIAEAASG--KIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTS 124 GA+A++V + SN ++ VD+T K L A K + + A+TG+ Sbjct: 62 NGAKAVIVDRQIND-------YSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSV 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + + + + G P+ L + S Sbjct: 115 GKTSTKDMIAAVLAQKYKTLKTSGN----------YNNQIGLPLTLLRLCSK---DEFAV 161 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S G + + + TN+G HI+ + + AK L + L K A Sbjct: 162 LEMGMSGFGEIELLAELARPQIAVITNVGPAHIEQLGSIENVAAAKKEL-LDSLDKSGTA 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D+ Y++++ + ++ + K N+++ I +GK F Sbjct: 221 ILNYDNEYTRKMAENFNSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYL 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PG+ +YNAL A + ++ + + L K+ R E + I Y Sbjct: 281 NKPGKHNIYNALAAIAIGFLNNMNPKGIQDGLSKIDFSDLRMEIKELENGAIVINDSYNA 340 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNP 420 S+ L + + R I V G ++ +G+ IA D+ I Sbjct: 341 NPISVRAALDVLAEMKGKRKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLI------ 394 Query: 421 RSEDPEKIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +I I G + ++ ++ + L K D+L++ KG Sbjct: 395 ---TVGEIAELIAEGAERTAMPVEKIYSFADKASTLKFLKDNLKKDDLLLI--KG 444 >gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 680 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 209/563 (37%), Gaps = 86/563 (15%) Query: 6 LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L+ + F + ++ I + +I+ +++D + +G +FV A Sbjct: 100 LLREIFEDAGVDARWIALEDDEDVEISGIANDVNALLSGDLFVC------------GSAR 147 Query: 65 AQGA------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116 GA EA+ + + + + ++ PI VV++ + L+ A YG + Sbjct: 148 EGGAMEDAAREAVAAGAVAVVSERAIEGLADVPIAVVEDVDEALADIARVFYGDPSKALT 207 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKA 173 +A+TG+ GK++ + V+ + + + + +G + + Sbjct: 208 AIALTGSVGKTTTSYLVKAVFEEADIRMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQL 267 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN----------LGRDHIDYHQTQ 223 + ++ G +E S+ + + G+ + T+ +D+ Sbjct: 268 TAGIADNGAQAAVMEVSAEQVRRKATRGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEY 327 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGK 275 ++ + E+ + + + A D K + + G Sbjct: 328 SSHVAEVFKALEDAETQRAVINVDAIDDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGA 387 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +V + V++S + + + L GE V A + +A I ++ Sbjct: 388 DVYPARVDYSLFETAVSLSTPAGNVEVVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAG 447 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-- 393 LE +PGR E V + VD A+T ++ ++ +++ R+I V GC G+ Sbjct: 448 LEATDSIPGRMELVDAGQ-DFSVLVDSANTPEAIRSVIDSVKATNCRRVITVIGCEGEMA 506 Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------ 440 ++G+R ++GK D +D+ VT+D+P++EDP KI +I G I Sbjct: 507 ESERGQRAVIGKTVHDHSDVVFVTNDSPKAEDPYKILEDICAGFRDEIYSKPGMEDEALF 566 Query: 441 ---------------------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +R AIR AI M + DV+++ G+G + Sbjct: 567 PFLKDMYEVHENAQYECMRLQNLVRRYVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDYF 626 Query: 474 IVTNGEKKMSVDCDIIREILGLI 496 +V EK D R+ L I Sbjct: 627 VVGR-EKHWFDDVVEARDALQKI 648 >gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 540 Score = 160 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 93/494 (18%), Positives = 186/494 (37%), Gaps = 40/494 (8%) Query: 3 LQDLIYKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 L+ LI + I + KI+ ++ S+++ +F + G++ DGH F Sbjct: 7 LRALIENYPIKSIVMPGNSGNIKQALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAF 66 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A +GA A++V +VV+N+R+ LS +++ Y + N+ Sbjct: 67 AEKAYNKGAVALIVEREIPHIPLL--------QVVVENSRRALSHLSAKFYQHPSKSMNM 118 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +T T+GK++ + QI + + + +++ LTTP + L + L+ + Sbjct: 119 IGITSTNGKTTTTYMIDQILSSNKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASM 178 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + ++E SS GL+ R+ + N+ RDHID H + + YF AK RL EE+ Sbjct: 179 KRKNINYCTMEVSSSGLELERVSAVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEEI 238 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293 + I + K + + I + + + I Sbjct: 239 QEDKRAVINVDCENACKMINYTKAKVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGF 298 Query: 294 ------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 ++ F + G VYNA AA + + + L K V RF+ Sbjct: 299 STLSGKWIKPGRFKIKLKVLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQ 358 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + +I D+ ++E+ ++ + + + +++ G R + K + Sbjct: 359 LIFDK--KFKIIDDHFANPGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENTKALI 416 Query: 408 DLADI-----AIVTDDNP--------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI- 453 VT + + + + + AI++ I Sbjct: 417 KWLKKLNLQEVYVTSSDEIVGIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVII 476 Query: 454 -EMLNKQDVLVVAG 466 L DVL++AG Sbjct: 477 ERHLQTGDVLLLAG 490 >gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL F2-515] Length = 242 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 21/234 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + I Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKI 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + GV+ +E SSH L Q R+ G F NL +DH+DYH T + Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAK 217 >gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 94/446 (21%), Positives = 168/446 (37%), Gaps = 31/446 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R IQ G +FV ++G K DGH FI +AI GA+A+ V ++ + A ++ Sbjct: 26 IGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQAVFVQEGHNTKTIQAF--ND 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V +T K L + P + VTG+ GK+S + + +G Sbjct: 84 VWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTKDLISGVLSGKFNVHKNLGN 143 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ L + + ++ + + SS G + +D + G Sbjct: 144 FN----------NEIGLPLTLF---NLEENHQISVLEMGMSSFGEIRDLVDMVHPEIGVI 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI++ +++ A + + ++ DD Y + + K + Sbjct: 191 TNIGVSHIEHLGSKEGILKA-KMEIASNFKEGNYLLVNGDDEYLRCIHKDDKDYTVIFYG 249 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + F + T+ + G+ F G VYNAL A + + + Sbjct: 250 LSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWIGLKYHMTF 309 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387 + L+ R E + Y + +S++ L + + S R I V Sbjct: 310 EEIQRGLDGFQPSKMRLEVITKGRMKIINDA-YNASPDSMKAALDVLDHMKSNRKIAVLG 368 Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPG--FIEK 442 F G ++G R + A DI + E I E GI Sbjct: 369 NMFEMGSFSEEGHRSVGAYFAKKNIDILVTV-----GEMANWIGLEAKKYGIEENSIRHV 423 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 N EAI + + ++D ++V KG Sbjct: 424 FNNKEAIEMLGQFVQEEDAILV--KG 447 >gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 468 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 90/500 (18%), Positives = 169/500 (33%), Gaps = 62/500 (12%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +I L++ + +I +S+D+R I G +FVA+ G + DGH FI + Sbjct: 6 LSKIIEATGGTLLSGT-------PDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDE 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A +GA +VS ++ I+ V +T K L A + ++AVTG Sbjct: 59 AFKKGAIGAIVSREVESKNI---------IIKVRDTLKTLGDIAKIYREEFDIPVIAVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + I R + G P+ L + + Sbjct: 110 SNGKTTTKEMLGYILTREFKTVKAKGS----------YNNFVGVPLTLLEMDR---HTQL 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E + G RL I + D + + E LP++ Sbjct: 157 AVLEMETNLLG-GIKRLCEIAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD Y ++ + + V + + + T++ + Sbjct: 216 VAVLNADDPYVLKMKEISRTKRIVTFGVENKS-EFSASNIRVGDTFLEFTLNNN---YRV 271 Query: 303 LFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 VYN L A + G+ V++ L+ R E + + Sbjct: 272 KLNTISYCNVYNGLAAIAVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNE 331 Query: 362 ---------YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 Y S++ L + + I + G G++ +GKI D Sbjct: 332 ESVRIINDCYNANPQSMQEALVAVGKMNSYTNKIAILGEMLELGEKAPEFHYQIGKICAD 391 Query: 409 LADIAIVTDDN------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 ++T + +ED R I + EA + +L D++ Sbjct: 392 CGFDMLITVGDLAQYMAHGAEDEGMPRENIFVSVNNV-------EASDRLLRILRPGDIV 444 Query: 463 VVAG-KGHETVHIVTNGEKK 481 ++ G +G + IV K+ Sbjct: 445 LIKGSRGMKMEEIVERLRKR 464 >gi|283782955|ref|YP_003373709.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis 409-05] gi|283441889|gb|ADB14355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis 409-05] Length = 599 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 89/549 (16%), Positives = 168/549 (30%), Gaps = 83/549 (15%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP + + D+R I++G + I GN + ++ A +G A V +Y+ Sbjct: 61 YFPNIDADEYFTNATYDTRDIKSGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 117 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + L+V + +K +S+ A+ +G E + V T K + Sbjct: 118 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 170 Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + S + S+ ++ LTTP K + + ++ +E SS Sbjct: 171 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNDMKYLVMEVSSQAY 230 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223 +R+ G+K +F N+ DHI + Sbjct: 231 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 290 Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + + DD Y++ + Sbjct: 291 LQDAERNNVLVTTFARIKKDEIEGDACENNNFDDLDDDCINYCAPANDDDYTELLTPDYI 350 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320 + N + + +F ++ A +A Sbjct: 351 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 410 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I D+ L H + + GR E VDYAH S + +L + Sbjct: 411 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 470 Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 RI ++ G GD+ +R + + A + + I T ++ +ED I ++ + Sbjct: 471 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 530 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486 +R EAI A + +L+ GKG E D Sbjct: 531 NPNVSSRIIIDRAEAIECAYNDAASSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 590 Query: 487 DIIREILGL 495 +I+ + GL Sbjct: 591 FVIKRLFGL 599 >gi|297242762|ref|ZP_06926700.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD] gi|296888973|gb|EFH27707.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD] Length = 601 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 90/549 (16%), Positives = 169/549 (30%), Gaps = 83/549 (15%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP + + D+R I G + I GN + ++ A +G A V +Y+ Sbjct: 63 YFPNIDADECFTNATYDTRDITPGTLLF-IKGNFQ--SEYLLNADNKGLAAYVAEQSYAQ 119 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + L+V + +K +S+ A+ +G E + V T K + Sbjct: 120 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 172 Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + S + S+ ++ LTTP K + G+ ++ +E SS Sbjct: 173 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 232 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223 +R+ G+K +F N+ DHI + Sbjct: 233 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 292 Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ + + + DD Y++ + Sbjct: 293 LQDAERNNVLVTTFARIKKDEIESDACENDNFDDIDDDRINYCAPANDDDYTELLTPDYI 352 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320 + N + + +F ++ A +A Sbjct: 353 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 412 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I D+ L H + + GR E VDYAH S + +L + Sbjct: 413 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 472 Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 RI ++ G GD+ +R + + A + + I T ++ +ED I ++ + Sbjct: 473 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 532 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486 +R EAI A + +L+ GKG E D Sbjct: 533 DPNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 592 Query: 487 DIIREILGL 495 +I+ + GL Sbjct: 593 FVIKRLFGL 601 >gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] Length = 461 Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 93/484 (19%), Positives = 184/484 (38%), Gaps = 41/484 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ ++I + KI ++S DSR I G +FVAI+G + DGH FI Sbjct: 4 MSLAEIRNAVSGKII-------QGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119 P+A+++GA A++V + I++V++T + L A ++ Sbjct: 57 PEAVSKGARALIVDHSIKA-------YPGVGIILVEDTTRALQDLARYHRMLIKGLTVIG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + + + + G + P+ L S Sbjct: 110 ITGSAGKTTTKDMIASVLKEKYNVTKTRGNLNNYY----------GLPLTLL---SLDGD 156 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + + S G + K G TN+G H++ +T A+ + Sbjct: 157 EEIAVLEMGMSKLGEIELLASISKPDIGVITNVGPTHLENLKT--VGNVARGKRELIEGL 214 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEG 297 + I D MK + ++ + + + ++ + Sbjct: 215 PTNGLAILNYDNKYVRDMKDYVEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKT 274 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PG+ VYNAL A + + +D + L + + R++ + Sbjct: 275 EKERITLQKPGKHNVYNALAAIAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITL 334 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIA 413 I Y S++ ++ I R+I V G GD ++ +G+ +A D+ Sbjct: 335 INDTYNANPLSMKAAIEATFDIAQERVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVL 394 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETV 472 I + R R+ G+ + N EA R ++++ K D ++V G +G++ Sbjct: 395 ITVGELGR----LTARSAEKEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKME 450 Query: 473 HIVT 476 IV Sbjct: 451 EIVK 454 >gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 293 Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 21/234 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + GV+ +E SSH L Q R+ G F NL +DH+DYH T Y NAK Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAK 217 >gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Halanaerobium praevalens DSM 2228] Length = 465 Score = 157 bits (397), Expect = 4e-36, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 172/475 (36%), Gaps = 40/475 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL++++ EL+ + K+ E+ DSR ++ G++F+AI+G +DGH ++ Sbjct: 5 KLKEIVAFTKAELL-------QGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLK 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAV 120 +A+ GA A++V N +L V++T K L A K + ++ + Sbjct: 58 EAVKNGASAVIVDRNSPAI---QAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + G P+ L Sbjct: 115 TGSAGKTTTKDMIFSVLSEKYYCLKTEGN----------YNNQIGLPLTL-----LRLDG 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E GL + L G TN+ H++ + + AK L + L Sbjct: 160 REDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDN-L 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AI+ D+ Y+K++ + I + + + + K Sbjct: 219 TAADTAILNYDNQYTKKIGTNSKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQAK 278 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ F+F G+ +YN L A + + + + L K R EF+ ++ I Sbjct: 279 NYKFIFNKAGKHNLYNILPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARII 338 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 Y S++ L + I + R I + G++ K +G A ++ Sbjct: 339 NDCYNANPLSVKAALDVLEQIKAKRKIAILASMLELGEKSLKKHQQIGLYAAAKKIDLLI 398 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468 T + I + + N E I + + +D++++ KG Sbjct: 399 TI----GPKAQAIATKARTKMKSEQVINLANNKECIDFLLSEIKAEDLILI--KG 447 >gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase [Clostridium sticklandii DSM 519] gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Clostridium sticklandii] Length = 457 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 168/477 (35%), Gaps = 54/477 (11%) Query: 6 LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++++ + KI V +DSR IQ ++AI G DG+ FI QAI Sbjct: 1 MIKLTKNQILSWTSGENNFKDYNPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A I+ + S ++ ++ V++T L A + LAVTG+S Sbjct: 61 NNKASVILSNRQSSNKE----------VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSS 110 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + + G +N + P AL+ Sbjct: 111 GKTTTKDMLYYVFNEHFSTHRTDGN--------YNNEIGLP-----LTALNIDKGYEAAI 157 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + S+ G + ++ TN+G HI+ ++Q+ F A L + Sbjct: 158 FEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILKSQENIFKA-KMEISNYLNNDDYL 216 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ DD Y + + + G + A+ + + ++ G + F Sbjct: 217 IVNGDDKYLTSLSENEYKFNLIKYGFGE-ECQLRASDYKAVDGQSEFWVTGMGINRRFTL 275 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P G V NAL A + I + + L K R + + N+ I Y Sbjct: 276 PAIGLHNVSNALSAIAAGLIYKIPTEKIQAGLMKFQPSKLRMQILEKNNIK-YINDSYNA 334 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 S+E ++ + + GR I + G G+ +G++A + D+ Sbjct: 335 NPESMEAVITSFESYARGRKIAILGDMLELGEFSVAAHERIGRLASEKFDLVFF------ 388 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIEMLNKQDVLVVAGKG 468 I +++ H F N + AI ++ D +++ KG Sbjct: 389 ------IGSQMKHAFDNFSTDENTDKRKYHFIDNNIAIEEIKRIIKYGDTILL--KG 437 >gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 463 Score = 157 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 101/475 (21%), Positives = 175/475 (36%), Gaps = 43/475 (9%) Query: 1 MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L D +++ + + + VS+DSR ++AG +FV + G + DGH F Sbjct: 1 MRL------DLTQIMTITGGDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I QA+ GA A + P++ V +T + L A+ + ++A Sbjct: 55 IAQAVQSGAVACLSE--------EVIAGLPVPVIRVTDTLRALGDLAAAVRQAFDGPVVA 106 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++ + I G G +N + P + Sbjct: 107 VTGSSGKTTTKEMLAGILALRGEGLKTEGN--------FNNLIGLP-----HTLFRLEAD 153 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + S+ G + + G TN+G H++ Q AK LF LP Sbjct: 154 HHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLHNLQGVARAKGELFAA-LP 212 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A+I DD ++ + + + + + + G+ Sbjct: 213 AGGTAVINGDDPRVLQLPVANGVRRLIYGCGSDAE--VRAEDIAVDGHGTHFCLLLAGES 270 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG + V+NAL AA A+ + A ++E LE GR S + Sbjct: 271 WPVHLSVPGRYNVHNALAAAAAAHALKVGGAQIVEGLEAFRSCAGRMAVAELASGATLLE 330 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 Y +++ L + + SGR I V G GD G A D+ I+ Sbjct: 331 DFYNANPLAVKAALSALDEMPGSGRRIAVLGDMLELGDAASEMHRQTGLDASKCVDLLIL 390 Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + R+ED + G+P + EA++ +L D ++V KG Sbjct: 391 LGE--RAEDTAAGARQ--GGMPPQSVWVVKSHDEAVQLLAGILRPGDRVLV--KG 439 >gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] Length = 468 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 186/455 (40%), Gaps = 28/455 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 I+ V+ DSR + AG FVAI G ++DG+ +I A+ QGAE + ++ Sbjct: 6 NISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTEREIDHRE------- 58 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ VDN RK L+ A+++Y E ++ VTGT+GK++ ++++ G ++ Sbjct: 59 -VQVVKVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGL 117 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG ++ LTTP + + + V ++E SSHG+ HR++G+ Sbjct: 118 IGTVKIKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFD 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 +TNL +DH+D H+ + Y A + + +ES A+I DD Y+ +M Sbjct: 178 IVVYTNLTKDHLDLHEDFEDYL-ATKKELFKQAGEESTALINLDDEYADRIMSGLSAEVI 236 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + A ++ ++ S + F+ L G +YNAL AA + + Sbjct: 237 TYGFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLI 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ + L++ + R E I D AH + + + I+ + R+ Sbjct: 297 YGLSVEEIKAQLKEFNPFFRRLEV--IYDDKFTIIDDCAHNPGNYRAVFETIKELDYDRL 354 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTD--------DNPRSEDPEKIRAE 431 ++ G+R +I +T D E+ E + Sbjct: 355 YIINAIRGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANKYDVVSDEEREVFLST 414 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + F + ++ + D++++ G Sbjct: 415 LCDSGLEFEYFDYLHPCLNQTLKQVKSNDLIILLG 449 >gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 517 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 87/520 (16%), Positives = 176/520 (33%), Gaps = 41/520 (7%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + G + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASTDEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G+ ++ +E SS R+ G+ +F N+ DHI + Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQ 290 + + + +++ D+ ++++ A + V + Sbjct: 238 KRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAH 297 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRF 346 + + D +N L AA H + + GR Sbjct: 298 ASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRM 357 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 358 EQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIV 417 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EM 455 + A + I T ++ +E I E+ I +R AI AI Sbjct: 418 EAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAH 477 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++ ++L++ GKG+E + D ++ + GL Sbjct: 478 ADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces urogenitalis DSM 15434] gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces urogenitalis DSM 15434] Length = 522 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 106/492 (21%), Positives = 182/492 (36%), Gaps = 30/492 (6%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P E ++ V D+R I G + V + G + ++ A QG A V YS Sbjct: 44 VDPDHLPELWLSSVVYDTRMITPGALLV-VKG-RFK-EDYLLPAQEQGMVAYVAEREYSS 100 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-- 137 + P L+V + + +SL A+ LYG HPE L + G +G + + Sbjct: 101 L-------TTCPGLIVTDALEAMSLLAAELYG-HPERELTIVGITGTKGKTTTAHLVHAV 152 Query: 138 --QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 Q +G S LTTP + + G+TH+ +E SS Sbjct: 153 LSQVTGGRSAMFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQA 212 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 R+ G+ G F N+G+DHI + + + E + + D + Sbjct: 213 YKLKRVFGLTFDVGVFLNIGQDHISLVEHP-TFEDYFFCKRELIRHSRQLVLNADTDYHG 271 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + G I ++ + D L G F Sbjct: 272 LLTEEARLAGARTLTVSREDGDLILTQEGKGFTLRYHGQEVAGSADQPMRLRLAGAFNQD 331 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA A + +++G + + V GR E + ++ G YVD+AH S +L Sbjct: 332 NAAAAVAVALSLGSPAGSPQLRALEQVQVSGRMERL-VSADGVVGYVDFAHNHLSTSSLL 390 Query: 374 KNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + RII+V G G + +R + A D I T+D+ E+ +I Sbjct: 391 DEVERVYGRENPRIILVSGSTGGKAVNRRQGIVTAANGRVDSFIFTEDDQDRENATQIAR 450 Query: 431 EIIHGIPGFI----EKGNRIEAIRTAIEMLN--KQ--DVLVVAGKGHETVHIVTNGEKKM 482 ++ + R +AI A+ +V++V GKG E ++V ++ Sbjct: 451 QMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIGKGDEVYNVVNGVKQPY 510 Query: 483 SVDCDIIREILG 494 D ++R +LG Sbjct: 511 EGDAVVLRRLLG 522 >gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] Length = 482 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 166/460 (36%), Gaps = 29/460 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR +Q G +FVA++G + D H F+P +A+GA A++ Sbjct: 13 DAAAWMAGAHLVGPDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS + A S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 73 VSRPLAG----ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 128 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + R+ ++ +++ P+ L + + + + + + Sbjct: 129 ISAVFARAVGEEARLATAGNLNNDI-------GLPLTLFRLHAQHR---LAVLELGMNHP 178 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + N R+H ++ + +A + L Sbjct: 179 GETEVLATIAQPTVALINNAQREHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANG 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + AG R + V + Q + + F F PL G Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNA 298 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +A GI ++ + L V GR + G + Y +S+ Sbjct: 299 RNALAATACSLAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRAA 358 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 359 IDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLAT-----GELARHMV 413 Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 414 DAFGSGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447 >gi|298253385|ref|ZP_06977177.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1] gi|297532780|gb|EFH71666.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1] Length = 596 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 89/549 (16%), Positives = 167/549 (30%), Gaps = 83/549 (15%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP + + D+R I G + I GN + ++ A +G A V +Y+ Sbjct: 58 YFPNIDADECFTNATYDTRDITLGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 114 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + L+V + +K +S+ A+ +G E + + T K + Sbjct: 115 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIIGITGTKGKTTTAYFTHAIL 167 Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + S + S+ ++ LTTP K + G+ ++ +E SS Sbjct: 168 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 227 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223 +R+ G+K +F N+ DHI + Sbjct: 228 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 287 Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + + DD Y++ + Sbjct: 288 LQDAERNNVLVTTFARIKKDEIEGAACENNNFDDLDDDCINYCAPANDDDYTELLTPDYI 347 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320 + N + + +F ++ A +A Sbjct: 348 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 407 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I D+ L H + + GR E VDYAH S + +L + Sbjct: 408 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 467 Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 RI ++ G GD+ +R + + A + + I T ++ +ED I ++ + Sbjct: 468 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 527 Query: 438 GF----IEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486 +R EAI A + +L+ GKG E D Sbjct: 528 NTNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 587 Query: 487 DIIREILGL 495 +I+ + GL Sbjct: 588 FVIKRLFGL 596 >gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68] Length = 517 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 91/517 (17%), Positives = 172/517 (33%), Gaps = 35/517 (6%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + G + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G+ ++ +E SS R+ G+ +F N+ DHI + + Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQ 240 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TI 293 K + A A G ++ V A + + Sbjct: 241 IIANAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEHASF 300 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFV 349 + D +N L AA H + + GR E Sbjct: 301 HIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRMEQF 360 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406 VDYAH S+ +L + + RI +V G G++ +R + + A Sbjct: 361 RDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAA 420 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNK 458 + I T ++ +E I E+ I +R AI AI ++ Sbjct: 421 ENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADR 480 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++L++ GKG+E + D ++ + GL Sbjct: 481 FNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] Length = 462 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 92/486 (18%), Positives = 174/486 (35%), Gaps = 44/486 (9%) Query: 1 MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK ++++I E + +I VS+DSR I G +FV + G DGH Sbjct: 1 MKALTIKEVIKYTSGEYLG-------NQFNIQITGVSTDSRTINKGELFVPLTGPNFDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 FI +A +GA AI+ + + I++ I+ VDN + L ++ Sbjct: 54 DFIERAFEKGAAAILCDKNKRSKVDNLPIKN---IIFVDNPQSALLSLSAYYRRLFDIPF 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TG+ GK++ +I G + P+ + Sbjct: 111 VAITGSVGKTTTKEMTAEILNMRFKVLKTSGNLN----------NEIGLPLTIF---RLE 157 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V V + S+ G ++ TN+G HI+ ++Q AKM + E L Sbjct: 158 EGYQVGVVELGMSALGEISRMASVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPL 217 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE 296 + + + + + G + I + + + + + I Sbjct: 218 GENDLAVLNGDCQE----LWDARKTIVPKTVFFGQERGDIKARNIKSNSTNELEFDIYGC 273 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F LPG V NAL A + +G+ + + L + R +F + Sbjct: 274 YGEMTFKALLPGIHNVNNALAAIAVGFEMGLTKEEIQQGFLNLKLPEMRLQFKKSYFGAD 333 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADI 412 I Y +S++ L ++ + G+ V GD + +GK A + ADI Sbjct: 334 IIDDAYNANPDSMKSALDFLQQYSYGKKRAVILGDMLELGDLSEKAHFEIGKYAAERADI 393 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV-AGKG 468 I + + + + G EA+ +++ D++++ A +G Sbjct: 394 FIAVGNY-----AQSFKKGALQGHLDSRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRG 448 Query: 469 HETVHI 474 + I Sbjct: 449 MKMEQI 454 >gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. longum JCM 1217] Length = 517 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 94/518 (18%), Positives = 180/518 (34%), Gaps = 37/518 (7%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + G + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMR 232 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K + Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQ 240 Query: 233 LFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + A D + + A + G + A + Sbjct: 241 IIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASF 300 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 D+ + A +A + +D A L +E + + GR E Sbjct: 301 HIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHAIESVRI-AGRMEQ 359 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKI 405 VDYAH S+ +L + + RI +V G G++ +R + + Sbjct: 360 FRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEA 419 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLN 457 A + I T ++ +E I E+ I +R AI AI + Sbjct: 420 AENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHAD 479 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + ++L++ GKG+E + D ++ + GL Sbjct: 480 RFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum DJO10A] gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum NCC2705] gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum DJO10A] gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis 157F] gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705] gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum DJO10A] gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum subsp. longum F8] gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis 157F] Length = 517 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 90/521 (17%), Positives = 184/521 (35%), Gaps = 43/521 (8%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + G + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKGQFK--AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G+ ++ +E SS R+ G+ +F N+ DHI + Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAI 285 + + + +++ D+ ++++ A + G + A Sbjct: 238 KRQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + D+ + A +A + + +D A L +E + + GR Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRI-AGR 356 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----E 454 + A + I T ++ +E I E+ I +R+ AI AI Sbjct: 417 VEAAENRIANFIFTAEDTDTEPIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARA 476 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++ ++L++ GKG+E D ++ + GL Sbjct: 477 HADRFNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFGL 517 >gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. longum JDM301] gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. longum JDM301] Length = 517 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 87/520 (16%), Positives = 176/520 (33%), Gaps = 41/520 (7%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + G + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G+ ++ +E SS R+ G+ +F N+ DHI + Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQ 290 + + + +++ D+ ++++ A + V + Sbjct: 238 KRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAH 297 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRF 346 + + D +N L AA H + + GR Sbjct: 298 ASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRM 357 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 358 EQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIV 417 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EM 455 + A + I T ++ +E I E+ I +R AI AI Sbjct: 418 EAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAH 477 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++ ++L++ GKG+E + D ++ + GL Sbjct: 478 ADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] Length = 454 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 150/460 (32%), Gaps = 36/460 (7%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ + + V++DSR ++ G +FVA+ G+ DGH + +A+ GA +VVS Sbjct: 8 LAATKAVCADFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVSHEV 67 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQI 136 S + + + +V++T A K + A+TG++GK+S + Sbjct: 68 S------GLPAGVAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLLAAC 121 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + + P + V + G Sbjct: 122 LSCKYNVVKTQGNFNNEIGLPKTLLSIKPD-------------TDIAVVEMGMRGLGQIA 168 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + +G TN+G H++ + + A LP++ A++ D+ Y Sbjct: 169 ELCRIAEPDSGLITNVGETHMELLGSMENIGKA-KSEIVLNLPEDGFAVLNGDNEYVLPA 227 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + T G+ + L GE VYNAL Sbjct: 228 ADKTKAKVVYFGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNAL 287 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G+ A+ + L + R E V I Y + S+E LK + Sbjct: 288 SAIAGAFCYGVPMAVSAQALATARLTGSRQEIVYIGDI-TFINDAYNASPASMEAALKTL 346 Query: 377 RT-----ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 R I V GD + +G+ A++ ++T I Sbjct: 347 AEAKKAAHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLT----YGPQAAYI 402 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +R EA M + D++++ KG Sbjct: 403 ADEAAELGGKSKHCADRQEAADALRLMASAGDIILL--KG 440 >gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis ATCC 14019] gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis ATCC 14019] Length = 597 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 94/530 (17%), Positives = 169/530 (31%), Gaps = 76/530 (14%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N ++ DSR I+ + I GN + ++ A G V +Y+ +N Sbjct: 78 NHITYDSRDIKKNTLLF-IKGNFK--PEYLKDADKNGLTTYVAEQSYAD-------YTNA 127 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+V + RK +SL +S +G E + + T K + + S + Sbjct: 128 VGLIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187 Query: 151 ST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S+ ++ LTTP + + +S G+ ++ +E SS R+ G+ Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247 Query: 206 AGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259 +F N+ DHI H T + Y K ++ + A D E + Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLILQDAQNEYVDV 307 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + R +G + + + + + +P VA Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEHYVAI 367 Query: 320 G-----------------------------------------LCIAIGIDSALVLEHLEK 338 + I ++ H + Sbjct: 368 LDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKALHAIE 427 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRD 395 + GR E VDYAH S + ++ + RI +V G GD+ Sbjct: 428 NVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGSTGDKA 487 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT 451 +R + + A D + + T ++ ED I + + NR EAI Sbjct: 488 VDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAEAIEY 547 Query: 452 AIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++E K ++++ GKG E V N D II+ + Sbjct: 548 SVEEARKDARENNRLNIILAIGKGDERWIKVHNKHVPYEGDSFIIKRLFS 597 >gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] Length = 450 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 151/399 (37%), Gaps = 25/399 (6%) Query: 13 ELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+N +L +I EV+ D+R + AG +FVA+ G + DGH F A+ GA A+ Sbjct: 3 ELLNAELIATDKGGNHLEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGAL 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS + P LVV +TR L FA+ + + P ++A+TG+SGK+SV Sbjct: 63 LVSK---------RLLVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKE 113 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 I ++ G + G + TP + + A+ Sbjct: 114 MTAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------YDFAVIELGANH 160 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + D + + NL H++ + AK +F L + I + Sbjct: 161 VGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSND 220 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + R + + V T+ PLPG Sbjct: 221 WPHWQETLHNKRVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHN 280 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L AA L +++G D A V + L +L VPGR + + + Y S+ Sbjct: 281 IANGLAAAALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAGKLLLDDTYNANVGSMTA 340 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + + + R++VV G GD +G+ A Sbjct: 341 AAQVLAEMPGYRVMVVGDMGELGDTAIDCHRQVGEAAKQ 379 >gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 457 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 95/486 (19%), Positives = 181/486 (37%), Gaps = 47/486 (9%) Query: 1 MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L +++I +L++ I+ +S+DSR I+ G +F+ + G +G + Sbjct: 1 MILSVKEIIDATSGKLLSG-------DINSTISGISTDSRTIKEGELFIPLKGENFNGEM 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F+ A+ G A + S + R N P++ VDNT++ L A K + Sbjct: 54 FVEDALKIG-SASLTES------VNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + G + P+ + Sbjct: 107 AVTGSNGKTTTKDMIYDVLSMKYNVLKTQGNFN----------NEIGLPLTIF---RLNK 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V + S G + RL I +TN+G HI+ +++ AK L E Sbjct: 154 KHDMAIVEMGMSGFG-EIRRLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENF 212 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + DD ++K + G + ++ G + + + + ++G Sbjct: 213 KEGYTVILNADDD----MLVKLTNKKGPQYITYGIDNGDVKAFDIEYKEESVKYKVIIDG 268 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D +PG+ VYN+L A + I G++ + + L + R + + Sbjct: 269 YMMDVELNVPGKHNVYNSLAAICIGIKFGVNKEDMRKALAEFQPSAMRLNILDVSGIKVI 328 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAI 414 Y S++ L ++ R + V G G+ +GK D + Sbjct: 329 NDA-YNANPGSMKAALSVLKEYKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVL 387 Query: 415 VTDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHE 470 +T E KI I G+ + N +EA +++ DV ++ G +G + Sbjct: 388 ITV----GEFASKIAEGAIKSGMDVENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMK 443 Query: 471 TVHIVT 476 IV Sbjct: 444 MEEIVK 449 >gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] Length = 461 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 80/452 (17%), Positives = 152/452 (33%), Gaps = 33/452 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ VS++SR ++ G +FV IVG K D H FIP A+ GA A Sbjct: 19 KGNPNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAACFTQQEPE---- 74 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + ++ V +T+K L FA+ + ++ VTG+ GKSS + + Sbjct: 75 EGFKYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKR 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ++ P+ + + + + + S+ G + RL I Sbjct: 135 VHKTAGNYNSQ----------IGLPLTVFGLDH---THEIAVIEMGMSNFG-EMERLSAI 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + Q A+ + + ++ + DD +++ + Sbjct: 181 ASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRE--SY 238 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G V + + + + + + P G V NAL A + Sbjct: 239 TGKIVWYGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAIAVA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381 G+ + L + R + + I Y + +S++ + + + + Sbjct: 299 YDQGLTLDDIRCGLLTYEGLAMRQQIHELDKI-TVIDDSYNASPDSIKSGIGVLMAVKST 357 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G+ I V G+R +G A A++T + EKI Sbjct: 358 GKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTV----GREAEKIAEGAAEESRK 413 Query: 439 FIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + G EA ++LN D ++V KG Sbjct: 414 ILVKACGTNDEAFAELEKILNDGDCVLV--KG 443 >gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T92] Length = 125 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 7/111 (6%) Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 2 RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 61 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 62 DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 111 >gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfotomaculum reducens MI-1] gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 457 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 176/482 (36%), Gaps = 44/482 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E+ + +Q KI + +DSR + +FVA+ G + DGH F +AI Sbjct: 1 MLTYTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 QGA A++VS I P+++V NT + L AS + ++AVTG++ Sbjct: 61 EQGASALLVSREI------TGIAPQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + + + G + V Sbjct: 115 GKTSTKDMIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEE-------------HQVAV 161 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + G + L G+ K TN+G H++ + + A + ++ Sbjct: 162 VEMGMRGPG-EIDFLAGLAKPTGAVITNIGEAHLERLGSVENIALA-KTEVLAHIGRDGF 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 AI+ AD Y E+ + G + + + IS G + Sbjct: 220 AILNADSPYLGELARNCQGKVWLYSLEGIGD--LQASNIRPEGTGVRFNISSPGGKEEIY 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+PG V N+L A G+ + +G+ + + L +L + R + + +N R I Y Sbjct: 278 LPVPGSHNVMNSLAAIGVGLQLGLQLEEIAQGLAQLCLTHSRLQILSSNGR-VIINDTYN 336 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDL-ADIAIVTDDN 419 +S + LK ++ R I V G GD +Q +G+ A + D I Sbjct: 337 ANPSSTKAALKVLKETARSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLI----- 391 Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG----HETV 472 + I + G + EA+ ++L D ++V KG H Sbjct: 392 SVGNLAQWITQGGLKGGLSQERVFQCQENSEAVEVLGKILKPGDTILV--KGSRGMHMEY 449 Query: 473 HI 474 + Sbjct: 450 IV 451 >gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes teichomyceticus] Length = 298 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 140/303 (46%), Gaps = 18/303 (5%) Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I+ AG +TN G+DH+D+H T + YF AK RLF+ ++ DD ++ Sbjct: 1 IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTE---VGVLNHDDPAVMSLLA--- 54 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAG 320 + G V Q+ G LPG V NAL+A Sbjct: 55 PGMVTYSASGNTEATWWASDVRPSDFGQRFVAHGPGGITVETGVALPGLHNVANALLALA 114 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIR 377 L +A+GID + + + VPGR E V VDYAH N++ L+ + Sbjct: 115 LLVAVGIDPQVAGTGVRECRGVPGRLEQVA-APGEILGVVDYAHKPNAIVAALAALRELA 173 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + GR++ V G GGDRD+GKRP+MG+ A AD+ I+TDDNPR+EDP +RA + G Sbjct: 174 SARGGRLVCVLGAGGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAAVRAAVRRGAE 233 Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +E R AI A+ + DV+ V GKG+E V NG+ D + Sbjct: 234 EAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKGNEQGQEV-NGQVLPFDDRIELAA 292 Query: 492 ILG 494 LG Sbjct: 293 ALG 295 >gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 458 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 165/469 (35%), Gaps = 37/469 (7%) Query: 8 YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 E+ + ++ +R +V +DSR I G +FVA+ G + D H F+ QA+ Sbjct: 3 KMTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQL 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA ++VS + IL+VD+T L A K ++AVTG++GK Sbjct: 63 GAHGVIVSR-------MQHDLPDGDILLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + + L +G + P+ L S G V Sbjct: 116 TTTKDMISALLETKYLVLKTLGNFN----------NEIGLPLTLLG---LDESHGAVVVE 162 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + G AG TN+G H++ T + AK L + + Sbjct: 163 MGMRGLGEIDFLARIACPTAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVL- 221 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D + A + + C + T+ + F P+ Sbjct: 222 -NGDDPWQRKYAHLTRAKVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKVFHLPV 280 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG +YNAL A + + G+ + +E L+ + + R + + N Y Sbjct: 281 PGRHNIYNALAAITVGLQEGLSWEMCMEGLQNVVLSGMRLQIIDCNGLKIINDT-YNANP 339 Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S + ++ + + G+ + V G G R +G+ +L +VT Sbjct: 340 ASSKAAVRILAEMPCAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTV----G 395 Query: 423 EDPEKIRAEII-HGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAGKG 468 E I G+ +R EA+ +L D+++V KG Sbjct: 396 ELALHIAEAAKAAGMDRKNIYVSRNNNEALEILNNILKAGDLVLV--KG 442 >gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM 16992] gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM 16992] Length = 517 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 85/511 (16%), Positives = 175/511 (34%), Gaps = 30/511 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + L + ++ ++ D+R + +G + + G + ++ Sbjct: 17 LLREIIQGDAWTLDAQTINGFDKPFGSITYDTRQVVSGAL-LCCKG-RFK-AEYLDGIDD 73 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +G A V + +S + P L+V++ RK +SL ++ YG + + T Sbjct: 74 RGLAAYVAENDFSA-------ATKAPGLIVNDARKAMSLLSAAFYGYPQNQLKVIGITGT 126 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 K + +G S + S+ ++ LTTP + + + + Sbjct: 127 KGKTTTAYLTQAMLNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAADN 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ ++ +E SS R+ G+ +F N+ DHI + + + Sbjct: 187 GMKYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNCR 246 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A + ++G + + + + Sbjct: 247 SLVLGTACAHADLIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAIAVEGEQIG 306 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGG 356 L G+F NA A + A+G D A + + GR E Sbjct: 307 SLSLQLDGDFNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIAGRMEHFHDTKSNT 366 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VDYAH S+ +L + + +V G G++ +R + + A + + Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGKDDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHL 426 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT--AIEMLNKQ--DVLVVA 465 I+T ++ E E + ++ + +R EA+ + AI+ N ++++ Sbjct: 427 ILTFEDTDDEPVEHVCQNMLDSVTNPDLDARIILDRTEAVESTVAIDRKNPNRLHIILII 486 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKG+E D I+ I GL+ Sbjct: 487 GKGNERWFKNHGKHIPFEGDDHIVERIFGLV 517 >gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter propionicus DSM 2379] gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 469 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 93/464 (20%), Positives = 168/464 (36%), Gaps = 34/464 (7%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E+ + R +++ VS+DSR + AG +FV + G + DGH FIPQ A+G A Sbjct: 4 IAEIAAATAGGFQGDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAA 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 ++ ++ + I ++ V +T L A+ + ++ +TG++GK++ Sbjct: 64 VLADQSFDGE-----IPPGLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + I +++G G +N + P +S G + + S Sbjct: 119 EMLATILEQTGPGLKTAGNL--------NNLIGLP-----QMLFRLDASHGWAVLEMGMS 165 Query: 191 SHGLDQHRLDGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + RL + N H++ + + AK L LP AII AD Sbjct: 166 EPG-EIDRLAEVAAPQTGIVLNACPAHLESMGSVEGVARAKGELLLR-LPAGGCAIINAD 223 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG- 308 D + + G R L+ G + ++ ++ Q + G+ + Sbjct: 224 DP---LIAGQPSPPGVRRLTFGLGDADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYG 280 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 VYNAL AA +GI + L+ LE+ RF+ I Y S Sbjct: 281 RHAVYNALAAAAAAHGLGIAAELIQSGLERFRPYDKRFQLEDVGGL-VLIDDSYNANPAS 339 Query: 369 LEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +E L + + G V G + +G A +AD + Sbjct: 340 MEAALTTLGELKGGGRAFVALGDMLEMGSNEAELHRALGVRAAAVADRLYLCGPLMAHAA 399 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A ++ + + E + + D ++V KG Sbjct: 400 VGALSAGMVE--EQVMRIPDHDEIAASILRQARPGDFVLV--KG 439 >gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] Length = 456 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 37/470 (7%) Query: 6 LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E+ ++N + +DSR + G IFVA+ G + DGH F +AI Sbjct: 1 MLTYTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 QGA A++V+ + T+ ++ V +T + L A+ + ++AVTG++ Sbjct: 61 EQGATALLVTK-------TVTVPPQVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSN 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + + + G + L+ + Sbjct: 114 GKTSTKDMIAAVLNTRYKTLKTQGNYNN-------------ELGLPLTLLALDQTHQAAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + G K TN+G H++ + Q AK + + E A Sbjct: 161 VEMGMRGFGEIDLLARLAKPTGAVITNIGEAHLELLGSVQNIAAAKA-EVLDHIGAEGFA 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D + + R G + + V + +S G + Sbjct: 220 ILNGDSPELRNQVSRCQGQVWFYSINGQTD--LVARNVRVEGRGVRYDLSYPGGTGEIYL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+PG V N++ A G+ + +GI ++ L ++ + R E + N+ V Y Sbjct: 278 PIPGSHNVMNSMAAVGVGLRLGIPFTDIVRGLAQVELTGMRLEIIKANNMTVINDV-YNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIAL-DLADIAIVTDDNP 420 +S + LK + + GR I V G G + +G+ A + D Sbjct: 337 NPSSTKAALKVLAEVAPGRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLA 396 Query: 421 RSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R I G+P N AI +++ D ++V KG Sbjct: 397 RFTAQGAI----KGGLPGDRVHHCDNNKLAIEVLRQVMQPGDTILV--KG 440 >gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 90/478 (18%), Positives = 186/478 (38%), Gaps = 34/478 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + +++ I +S+DSR ++ +F+ + G K DG F+ A+ Sbjct: 3 ELLIAEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAM 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+A++ + +++ + ++ V++T + L AS K +AVTG++ Sbjct: 61 TKGAKAVLTARLDNIEYLRDFPFN---VIYVNDTLEALHKIASYYRKKFNIPFVAVTGST 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + ++ + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIF---NLENTHQIAV 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + S G + + +K FTN+G HI+ +++ AK L E+ + Sbjct: 165 VEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD + K + G + I + + T+ + + + Sbjct: 225 LNADDD----MLSKIPLQYSSKYYRYGIKNGEIKACNIEKGEKGIKYTLKYKNLEKEIKL 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +PG VYN+L A + + G+D + E L+ R + Y Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGVDVDDMAEVLKDFQPGKMRLNIIEKGDIKIIDDA-YNA 339 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ L +R R I V G G+ +GK+ D ++T N Sbjct: 340 NPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGN-- 397 Query: 422 SEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIE-MLNKQDVLVVAG-KGHETVHIV 475 + I E G+ I N E ++ ++ ++ + D+++V G +G + IV Sbjct: 398 --TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIV 453 >gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] Length = 479 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 164/478 (34%), Gaps = 45/478 (9%) Query: 6 LIYKDFPELINQLSIFPMQ--WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + K+ V DSR ++ G +F A+ G + DGH F + Sbjct: 1 MIALSLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFARK 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI GA A++ + D P +VV + + A + + ++A+TG Sbjct: 61 AIEAGATAVLAARPVGTADAP------VPAIVVPDVIAAMGALARAVVERLDATVVALTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G +N + P + + + Sbjct: 115 SAGKTSTKDLIAQLLQRRGPTVWTPGSL--------NNEIGLP-------LTAMSADEAT 159 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238 H+ +E + G R G N+G HI ++ A ++ Sbjct: 160 LHLVLEMGARGKGHIRYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPA 219 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A++ ADD + +M R ++ A + T+ Sbjct: 220 EEGGVAVLNADDPLVRAMMSRTKARTVLFGEAEDADVRAGNVRL-ADGGRPAFTLHTPTG 278 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357 + L GE V NAL AA + +G+ + L + R E + Sbjct: 279 CSEVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTV 338 Query: 358 IYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 + Y S+ L+ + + R V G G+ + +G++A+ L Sbjct: 339 VNDAYNANPESMRAALRALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLN 398 Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + V D G + + A+ L DV++V Sbjct: 399 VSKLVAVGGQEAAWLD----MGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452 >gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] Length = 401 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 97/413 (23%), Positives = 163/413 (39%), Gaps = 39/413 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L+ E + + I ++ S ++ G +FV I G DGH +I Sbjct: 1 MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105 A+ GA A+VV + ++ ++ V +TR+ L+ Sbjct: 54 MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113 Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRL 162 ++ Y + I+ +TGT GK++ A I + +G + +G T + Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP L + L+ + S G +E SS G+ R++GI G F N+ DHI Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273 + A+ + L ++ A I D + E + H S G + Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 + + ++ + + +FL +PG F V NAL A + I +V Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVK 350 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + L++ VPGR E V + VDYAH SL +L +R GR++V Sbjct: 351 DALQR-QTVPGRCENVRIS-DKFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVV 401 >gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 517 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 89/521 (17%), Positives = 183/521 (35%), Gaps = 43/521 (8%) Query: 3 LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++ L+ + + + + ++ D+R + + + G + ++ Sbjct: 12 LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPDAL-LCCKGQFK--AEYL 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V Sbjct: 69 NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120 Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + G + ++ LTTP + + + Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G+ ++ +E SS R+ G+ +F N+ DHI + Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237 Query: 235 EELLPKESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAI 285 + + + +++ D+ ++++ A + G + A Sbjct: 238 KRQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + D+ + A +A + + +D A L +E + + GR Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRI-AGR 356 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----E 454 + A + I T ++ +E I E+ I +R+ AI AI Sbjct: 417 VEAAENRIANFIFTAEDTDTEPIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARA 476 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 ++ ++L++ GKG+E D ++ + GL Sbjct: 477 HADRFNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFGL 517 >gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 317 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 142/319 (44%), Gaps = 9/319 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 5 NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 60 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 61 AYEVEGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 120 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 121 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF K + DD + Sbjct: 181 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 239 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 298 Query: 313 YNALVAAGLCIAIGIDSAL 331 N L A G + + Sbjct: 299 SNVLAAVGALLGLDYALDE 317 >gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] Length = 461 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 90/478 (18%), Positives = 186/478 (38%), Gaps = 34/478 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L+ + + +++ I +S+DSR ++ +F+ + G K DG F+ A+ Sbjct: 3 ELLIAEIVRATQG-KLIKGSLKDKII-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAM 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+A++ + +++ + I+ V++T + L A K +AVTG++ Sbjct: 61 TKGAKAVLTARLDNIEYLKDFPFN---IIYVNDTLEALHKIAYYYRKKFNIPFVAVTGST 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + QI + G + P+ + + ++ + Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIF---NLENTHQIAV 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + S G + + +K FTN+G HI+ +++ AK L E+ + Sbjct: 165 VEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + DD ++K + G + I + + T+ + + + Sbjct: 225 LNADDD----MLLKILQQYSSKYYRYGIKSGEIKACDIEKGEKGIEYTLKYKNLEKEIKL 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +PG VYN+L A + + G+D + E L+ R + Y Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGVDVDDMAEALKDFQPGKMRLNIIEKGDIKIIDDA-YNA 339 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ L +R R I V G G+ +GK+ D ++T N Sbjct: 340 NPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGN-- 397 Query: 422 SEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIE-MLNKQDVLVVAG-KGHETVHIV 475 + I E G+ I N E ++ ++ ++ + D+++V G +G + IV Sbjct: 398 --TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIV 453 >gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str. Miyayama] gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 469 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 106/442 (23%), Positives = 193/442 (43%), Gaps = 15/442 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++SD + + ++F A KE H I +AI +GA +I+ + Y + + Sbjct: 14 RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGARSILTNQKYEEE----CLAQ 66 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V ++ S ++ K P + AVTGTSGK SV F Q+C +G + + Sbjct: 67 GVNFFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLS 126 Query: 149 PTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ + Q+ + L L+ + + + + S ++ +D + L Sbjct: 127 ASNEPTDALGLWQEKDHMILDAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNLK 186 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A +F+NL RD ++ + F K+RL E+LP++ ++ Y+ +++ H Sbjct: 187 AAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQ--HCPNK 244 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +V + G I L Q +T+ V GK+ + G+F N + A GL I+ Sbjct: 245 KVCTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISC 304 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384 GID + + + + G EF+ +I D A T + L +L +I+ + Sbjct: 305 GIDPSSIEHEQ--ISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDV 362 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 +V C + + M KIA + + I T D+ S EK R E++ P IE + Sbjct: 363 TLVLRCSENYEGKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIED 422 Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466 R +A+ AI +++V+ G Sbjct: 423 RKKAMEYAINNCKPSEIIVMQG 444 >gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera] Length = 347 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 24/292 (8%) Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 Q AK+ + + D + + + ++ + +H K Sbjct: 34 QKNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFE 93 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + QV + + L G +YN L A + IA+G ++ +E++ VP Sbjct: 94 LSLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVP 153 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E + + + VDYAHT ++L +L ++R + + RII VFGC G+ D+GKRPIM Sbjct: 154 GRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMT 212 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT------------ 451 KIA D +D+ I+T DNP++EDP I +++ G+ + + A Sbjct: 213 KIATDKSDVVILTSDNPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFL 272 Query: 452 ----------AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+ M + D++VVAGKGHET I + +K+ D + RE L Sbjct: 273 HDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 323 >gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] Length = 466 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 159/473 (33%), Gaps = 40/473 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++ L + V DSR ++ G +FVA+ G + DGH F+ Sbjct: 4 LRDVLDGTAGMLRG------SAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVAD 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +GA +V + ++ + P++VVD+T L AS + AVTG Sbjct: 58 AVRRGAAGALVEARWAEE----LANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--SPIYLAKALSYLSSQ 180 + GK+S + + + +T A D P + L +Y + Sbjct: 114 SVGKTSTKEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGE 173 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++ G TN+ H+ T + A+ Sbjct: 174 VRELCALAEPRIG--------------VVTNVSYAHLARMGTIERI--AQSIAELPESLP 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + +M A + + + + + G+ Sbjct: 218 ADGVAVLNGDDFRVRLMAERTPARVLLYGLSPDCHVRAEEIESRGLDGISFDLVAFGERN 277 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G+ V++AL A + +G+ +L V R V + + Sbjct: 278 RVRLPLLGQHSVHHALAAIAVGYELGLTLEEMLPGFHD-PRVQVRLLTVPGINGATLLDD 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + S L + I + R I VFG G ++ ++G+ A + D Sbjct: 337 TYNASPASCMAALSLLAEIPAQRRIAVFGDMYELGWYEEEGHRMVGRRAAAVVDRLF--T 394 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 PR+ + A I G+ +R E + E L D +++ KG Sbjct: 395 LGPRARWIAE--AAIEAGLAPERVWATDDRRELVAVLRETLRPGDFVLI--KG 443 >gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Filifactor alocis ATCC 35896] Length = 452 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 171/471 (36%), Gaps = 36/471 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + L + E + + + E I +++DSR ++ G +F+AI G DG+ F+ Sbjct: 1 MNI--LKFSQIVEWTEGVVLGDSMFSE-SIYSITTDSRKVKQGDLFIAIKGEHFDGNHFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A++ S ++ ++ V +T K L AS ++++ Sbjct: 58 DMALDNGAVAVLSSISHKSPR----------VITVPDTVKALGKLASGYRDMLDIPVISI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + + G + + Sbjct: 108 TGSSGKTTTKDMIFYALNSQCNAYRTEGNFNNEIGMPLTILNSDEE-------------H 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + SS G ++ K G TN+G H++ +Q+ F A + + Sbjct: 155 DVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQEKIFEA-KMEITSFMHE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ +D + + + K + + K + + ++G + Sbjct: 214 KDILLVNGEDKFLRNLDKDVYQPMIKTFGFSN-SCDYFCKNYDYREDSTDICAMIDGLEV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 ++ P G+ + N+L A G+ + +D + L R + + I Sbjct: 273 NYTIPSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPSKLRMQIEKKDGI-TIIND 331 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTD 417 Y +S++ +L + + R I + G + RD K +G+ A DI I Sbjct: 332 SYNANPDSVKSVLSILAEKNNVRRIAILGDMLELGRDSDKYHRQIGECAAHSCDILIGIG 391 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + G + E++ T +++ DV+++ KG Sbjct: 392 MFSDYMREGALEHGMDEGF--CYSFRTQEESVTTIKDIMRVGDVVLL--KG 438 >gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] Length = 464 Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 166/470 (35%), Gaps = 34/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L + + + I + I DSR ++ G++F+ I G + DGH FI Sbjct: 6 MK--NLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFI 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P QGA ++ + P ++V++T + A+ ++ + Sbjct: 64 PTVFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGI 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + ++ G + P+ + S Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + HRL TN+G H+++ + AK FE ++P Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMP 221 Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + DD + V + + + G + + Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVTPE 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FD +PGE VYNA+ AA + + +G+ A + +EK + GR F+ + G Sbjct: 282 GEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIK--THGMT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414 + D + + + + GR I V G G+ ++ +G+ + + Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E AE + +R + + + + D ++V Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447 >gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T92] gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T85] gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T92] gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T85] Length = 120 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 7/107 (6%) Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGF 439 +VFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 1 MVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQV 60 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +E +R +AIR A+ DV+++AGKGHET G + D Sbjct: 61 VEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 106 >gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] Length = 459 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 163/475 (34%), Gaps = 39/475 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L D+ +I + +I VS +SR G +F A+ G++ DGH F+P Sbjct: 4 RLLDIARAIEGNIIQGR-------PDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVP 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ GA A VVS SL +++V + +K L + A + +++ VT Sbjct: 57 EALRNGALAAVVSRPVSLPQGLGERG----LILVRDVKKALQMLARWHRQRFKLHLVGVT 112 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + G P+ L Sbjct: 113 GSVGKTTTKDLTATCLEARFQTLKTEGN----------YNNEIGVPLTLL---RLDHRYE 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V + + G + G N+ H++ + + A + + + Sbjct: 160 ACVVEMAMRNLGEIEELASIALPTCGIIVNVEPVHLENLGSMERIAQA-KCELFKYVDER 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I D+ E ++ R + + + + +++ + +F Sbjct: 219 GFVAINGDNPLLVEAAEKYAVKKVRFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFC 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P PG YN + AAG+ + +G+D A + + R I Sbjct: 279 --LPFPGSHLAYNVIAAAGVAVRLGVDLADIQSKIRSFSPSSRRLNIKTGLGGITIIDDC 336 Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y S++ L+ + + +GR + V G G + +G A +L +VT Sbjct: 337 YNANPVSMKAGLEVLSDVAAGRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTV 396 Query: 418 DNPRSEDPEKIRAEII-HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E I G+ + ++ AI L + V+++ A +G Sbjct: 397 ----GELARHIGEAAKEAGLDKERILHFSDKELAIAYLKSDLPAEAVVLIKASRG 447 >gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] Length = 237 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 26/238 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + KI + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKD 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L + +Q + +E +S GL R+ G FTNL +DH+DYH+T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVK 220 >gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] Length = 466 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 101/471 (21%), Positives = 177/471 (37%), Gaps = 40/471 (8%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ +++ K +VS+D+R I++G++FVA+ G+ DGH FI A Sbjct: 13 SNMAEFTLSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAA 72 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I +GA +V S++ + VDNT A + ++A+TG+ Sbjct: 73 IEKGATGAIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGS 124 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK++ + + +G + ++ P L + + + Sbjct: 125 SGKTTTKE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC--- 171 Query: 184 HVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 VE GL Q + G TN+G HI+ +++A AK L LP+ Sbjct: 172 --VVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPEN 228 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 S AI+ DD Y K + G + + + + + T + FD Sbjct: 229 SVAILNEDDPYVKAM--DRLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFD 286 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P+ GE VY+AL A +GI S + + L + P R E V + Sbjct: 287 IFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFEDI-VILNDA 345 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y +S+ +K + + R I + G GD + +G + + + T Sbjct: 346 YNANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFT-- 403 Query: 419 NPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I E G+ F + A + ++ K DV++V KG Sbjct: 404 --FGDAAAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 449 >gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] Length = 452 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 178/465 (38%), Gaps = 40/465 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +++ K ++S+D+R I++G++FVA+ G+ DGH FI AI +GA Sbjct: 5 TLSQVVEATQGTSAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +V +++ + VDNT A + ++A+TG+SGK++ Sbjct: 65 GAIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + +G + ++ P L + + + VE Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEAC-----VVEM 161 Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 GL Q + G TN+G HI+ +++A AK L LP+ S AI+ Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD Y K + + G + + + + + T + FD P+ Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VY+AL A +GI S + + L + P R E V + Y + Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S+ +K + + R I + G GD + +G++ + + T + Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFT----FGDA 393 Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I E G+ F K + A + ++ K DV++V KG Sbjct: 394 AAFIAKEAKKAGLTAFRCKSHLEMANAYS-DIREKGDVILV--KG 435 >gi|261337529|ref|ZP_05965413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum DSM 20093] gi|270277931|gb|EFA23785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum DSM 20093] Length = 524 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 87/521 (16%), Positives = 172/521 (33%), Gaps = 47/521 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+++I +D L +R++ + ++ + + G V G ++ Sbjct: 18 LREIITRDGWTL---NPSDVPGYRDQ-VTGLTYSTTQVVPGSALVC-KGRFR--AEYLQD 70 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 Q V + YS + P L+V+N + LSL A+ Y + + + Sbjct: 71 IDQQRLAWYVATEDYSA-------YTAAPGLIVNNATQALSLLAAAYYDYPQDELTVIGI 123 Query: 123 TSGKSSVASFVQQICQRS---GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177 T K + + G ++ LTTP + + + Sbjct: 124 TGTKGKTTTAYFTQAMLNALSGGKCALFSSNDNCIDGVHYVESDLTTPESLDAFRMMRQA 183 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G+ ++ +E SS +R+ G+ F N+ DH+ + F + ++ Sbjct: 184 REHGMEYLVMEVSSQSYKVNRVYGLHFDVAGFLNISPDHVSPIE--HPTFEDYLYCKRQI 241 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-------------CA 284 + S ++ AD + + +++ AH V G + + Sbjct: 242 IANTSALVLGADCDHVRLLLQDAHLHDVPVTLFGTEDSTLPDDGQSTPLGLVTVGAADER 301 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 P + A +A + ++ + + L+++ + G Sbjct: 302 HDRFDVTVFGDPAGSIALAMPGDFNYVNAAAAIALIEAAGVPFNADVAYKALDEVRI-AG 360 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPI 401 R E + + VDYAH S+ +L + ++ G G + +R Sbjct: 361 RMETTRDDESNTVVIVDYAHNGISVTSVLDYVDLQWGQEQPSITLITGSAGGKALDRREE 420 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457 M + A D I T D+P E + I + I +R +AI +AIE Sbjct: 421 MVRAAEQRIDHFIFTTDDPNEEPVQDICEHMASYIQAPDVRHSIILDRAQAIASAIEEAR 480 Query: 458 KQD-----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D V++ GKG E D ++ +L Sbjct: 481 ADDSGRLHVILALGKGEERWIKAHGKHMPYEGDDHVVARLL 521 >gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 153/404 (37%), Gaps = 23/404 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L + +E K S D+R+I+ G ++VA+ G + DGH F+ A Sbjct: 1 MIELTLSEVAPALGTT-WKGQEIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQ 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA AI+V + P L V +TRK L A + ++A+TG++G Sbjct: 60 KGASAIIVERDVVC---------DLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ ++ I + + ++ P+ L + + Sbjct: 111 KTTTKEMLKTIFTQKISAESNEINVLATQGNLNND---IGVPLTLFNLQANHR---YAII 164 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + K + T H++ ++ + AK +F L ++ AI Sbjct: 165 EMGANHAGEIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSH-LTEDGIAI 223 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I DDAY+ + A + ++ K + + + + D P Sbjct: 224 INNDDAYTTLWHELAASHQINTFALENTADVT-AKDIQLNEDSCDFILHTQKSDIAIHLP 282 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 LPG+ + NAL A+ +A G ++ + L+ + V GR + N G + D Y Sbjct: 283 LPGQHNIMNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKIN--GITLIDDTYNA 340 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 SL L + +++ G + G+ A Sbjct: 341 NPTSLNAALAILSNYPPPYWLILGDMKELGQKSAEFHQQAGQRA 384 >gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 100/294 (34%), Positives = 145/294 (49%), Gaps = 10/294 (3%) Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 TT S I + K L++ QG + ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 7 ENTTGSAIDVQKTLNHFVMQGASFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKF 276 Y AK +LF KE ADD + + + +A + ++G++ Sbjct: 67 GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + + + + + L G F V N L+A +A+ ++ + Sbjct: 125 LEAQNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ +FGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALVAARLHCKGQLWCLFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G I + NR E Sbjct: 244 GKRALMGSIAEQWADHLVVTDDNPRTEDPGSIVADILSGLVEIRHAVVIHNRAE 297 >gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str. Illinois] gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str. Illinois] Length = 470 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 103/442 (23%), Positives = 192/442 (43%), Gaps = 16/442 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++SD + + ++F A KE H I +AI +GA++I+ + Y + Sbjct: 16 RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGAKSILTNQKYE-----ECLEQ 67 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V ++ S ++ K P + A+ GTSG+ SV F Q+C +G + + Sbjct: 68 GVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKAVTLS 127 Query: 149 PTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ + + + L L+ + + + + S+ ++ +D + L Sbjct: 128 VSNEPMDTPKLWQEKDHLISDAADMYNILDDLAERRIEYCCLAISAAAIESRMIDSVNLK 187 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A +FTNL RD ++ + K+RL E+LP+ ++ Y+ +M+ H Sbjct: 188 AAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQ--HCPNK 245 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +V + G I L Q +T+ + GK+ + G+FQ N + A GL I+ Sbjct: 246 KVCTYGRATSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGLAISC 305 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384 GID + + ++ + G EF+ +I D A T + L +L +I+ + Sbjct: 306 GIDPSSIEHE--QISPLAGYMEFLEDYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDV 363 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 +V C + + M KIA + + I T D+ S EK R E++ P IE + Sbjct: 364 TLVLRCSENYEARNTLKMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELMSCCPKAIEIED 423 Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466 R +A+ AI +++V+ G Sbjct: 424 RKKAMEYAINNCKPSEIIVMQG 445 >gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] Length = 459 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 92/445 (20%), Positives = 159/445 (35%), Gaps = 33/445 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++AG FVA+ G DG F+P A+++GA A++V Sbjct: 26 ISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVDR-----MQPGFGPLA 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T K L A + I+A+TG+SGK+S V + ++ + G Sbjct: 81 VPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQKYKTVCTSGN 140 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ L + + + + G I Sbjct: 141 FNNQ----------IGLPLSLLQM---DKTTEYGVFELGTNHPGEIATLSRIIAPDIVIV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+ + + +A + AI+ DD +SK + +AG + Sbjct: 188 TNIGSAHVGHFGSVEAIAQE-KTDLLTFVSARGFAILGTDDFWSKRL--HVRSAGRVIWV 244 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 Q L ++ + I + F+ P N+L AA + + S Sbjct: 245 GDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSLSS 304 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388 + LEK GR G + Y S+ L+ + + IVV Sbjct: 305 EEITRGLEKTSFPEGRLTVHPIK-NGFVLDDSYNANPQSMLSALRALVEYPFSSKKIVVL 363 Query: 389 GCG---GDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 G GD+ + +G A L+ + +V P ED + I Sbjct: 364 GSMGELGDKARASHFEVGSFAGGLPLSHVIVV---GPYGEDVYEGLRSSSFPIDCIFRTA 420 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA ++LN ++V KG Sbjct: 421 DTEEAFFCLHKLLNGNVTVLV--KG 443 >gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 138/294 (46%), Gaps = 10/294 (3%) Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 7 ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 Y AK +LF KE ADD + + + +A + + Sbjct: 67 GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124 Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + + + L G F V N L+A +A+ ++ + Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G+ + NR E Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVXXXHAVVIHNRAE 297 >gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] Length = 466 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 180/470 (38%), Gaps = 40/470 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ +++ K ++S+D+R I++G++FVA+ G+ DGH FI AI Sbjct: 14 NMAEFTLSQVVEATQGANAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAI 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA +V +++ + VDNT A + ++A+TG+S Sbjct: 74 EKGATGAIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSS 125 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + +G + ++ P L + + + Sbjct: 126 GKTTTKE----------MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEAC---- 171 Query: 185 VSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 VE GL Q + G TN+G HI+ +++A AK L LP+ S Sbjct: 172 -VVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENS 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ DD Y K + + G + + + + + T + FD Sbjct: 230 VAILNEDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDI 287 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ GE VY+AL A +GI S + + L + P R E V + Y Sbjct: 288 FLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAY 346 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 +S+ +K + + R I + G GD + +G++ + + T Sbjct: 347 NANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFT--- 403 Query: 420 PRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I E G+ F K + A + ++ K DV++V KG Sbjct: 404 -FGDAAAFIAKEAKKAGLTTFRCKSHLEMANAYS-DIREKGDVILV--KG 449 >gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] Length = 452 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 101/465 (21%), Positives = 175/465 (37%), Gaps = 40/465 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +++ K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA Sbjct: 5 TLSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +V S++ + VDNT A + ++A+TG+SGK++ Sbjct: 65 GAIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + +G + ++ P L + + + VE Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC-----VVEM 161 Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 GL Q + G TN+G HI+ +++A AK L LP+ S AI+ Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD Y K + G + + + + + T + FD P+ Sbjct: 221 EDDPYVKAM--DRLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VY+AL A +GI S + + L + P R E V + Y + Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFEDI-VILNDAYNANPS 337 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S+ +K + + R I + G GD + +G + + + T + Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFT----FGDA 393 Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I E G+ F + A + ++ K DV++V KG Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435 >gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103] gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103] Length = 452 Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 156/405 (38%), Gaps = 26/405 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +++ + + +N+V++D+R + AG +FVAIVG + D H F AIA+GA+A++VS Sbjct: 9 LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P +VV +TR A+ + + ++A+TG+SGK+SV Sbjct: 69 K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I ++ G + G + TP + + A+ G Sbjct: 120 SILRQCGETLHTAGNLNNDFGVPMTLLRLTPE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ A NL H++ + + A LP AI+ AD Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKA-KGEIFYGLPARGTAILNADSNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S + + + + D + PLPG + N Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +++ + V L+ L VPGR V + + Y S+ + Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 + + R++VV GD + +G A D + T Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390 >gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group] Length = 889 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 92/440 (20%), Positives = 192/440 (43%), Gaps = 32/440 (7%) Query: 10 DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+++ + P+ ++ + V D+ + AG ++V + G + G + +A + Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124 GA A+V ++ A +++VD+ L + + LY + +++ + V GT Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G ++ A V+ + + G+ + +G ++ + PI + + ++ + G Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +E ++ G+ +D I TN+ + T + Y N+ LF ++ Sbjct: 399 AEAALLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298 E + D S V++ ++ K + K + +V + Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +YN L + + +A+G +++ +E++ +PGR E + + + Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405 VD+A T SL +L ++ + RI+ VV GC G+R++GKRP+M K+ Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKV 637 Query: 406 ALDLADIAIVTDDNPRSEDP 425 A + +D+ ++T DNP +EDP Sbjct: 638 AAEKSDVVMLTSDNPANEDP 657 >gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] Length = 337 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 30/343 (8%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L + L+ + E + +RKI ++ S ++ G +FV I G + +GH + Sbjct: 1 MQLLRSLLKQILYESVRGDD-------DRKITDICCHSEKVKEGSLFVCINGYRNNGHEY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATI---------------RSNTPILVVDNTRKFLSL 104 +PQA+ GA +VV Y ++ S + N ++ V +TRK LS Sbjct: 54 VPQAVEHGAAVLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSA 113 Query: 105 FASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-R 161 ++ + E ++ +TGT+GK++ A I Q +G IG + ++ + Sbjct: 114 LSAAFFDHPAERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVK 173 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 TTP + + LS + +E SS G+ R I G F N+ DHI + Sbjct: 174 NTTPESCEIHRLLSRMVENECDCCVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIG--K 231 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHL 279 + A F+ + L+ + I+ DD +++ + Sbjct: 232 GEHATFSEYLYCKSRLMRQCGIGIVNQDDPNVDKILAGHTCEVENFSIRHPSDVMAEDEW 291 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + + T+ E + D + LPG+F +YNAL A + Sbjct: 292 YGMESGSLQSHFTVKREWRREDIVMQLPGQFNIYNALAAISVA 334 >gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] Length = 452 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 53/472 (11%) Query: 1 MKLQDL---IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 M L+++ + F ++ LS ++ IN++S+DSR IQ IF+A+ G+K DGH Sbjct: 1 MILREIPTILSGTFQKISQTLS-------DKSINKISTDSRTIQENDIFIALQGDKFDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 F+ + I +GA A++V+ S++ P +VV +T A+ I Sbjct: 54 RFVDEVIDKGAIALIVNHEVSVKST-----KEIPQIVVKDTLIAYQEIANWWRNHVKIPI 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TG+ GK++ + + +G + + P L + Sbjct: 109 IGITGSVGKTTTKEII----------AAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNH 158 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + L G TN+G HI ++QA A Sbjct: 159 NYAVIEMAMRGKGEIALLSQIA---CPTIGIITNVGTAHIGRLGSRQAIAEA-KCELLAE 214 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +P+ S AI+ DD E + L + + Sbjct: 215 MPENSVAILNHDDQRLVETAATVWQGKTITYGLEGGDITGELLENQI----------LRV 264 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + DF PLPG N L A + + +D L +++ GR + + Sbjct: 265 EGMDFPLPLPGRHNALNYLAALAVTKELNLDW-TFLMEGVTVNLPQGRSQQYSLKNDVIL 323 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIA 413 + Y S++ L+ ++ R + V G D +G+ A LA D Sbjct: 324 LDETYNAGLESMKAALQLLKDTPGTRHLAVLGTMKELADASAELHREVGETAEKLAIDAL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463 + D+P+S I G+ + I+ E++ D ++ Sbjct: 384 FILVDDPQS-------QAITKGVTTIETQSFPTHEQLIQRLREVIQPGDRIL 428 >gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 255 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 11/210 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86 ++ DSR + G +FVA+ G++ DG FI +AI QGA ++ + + Sbjct: 24 MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83 Query: 87 --RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q G Sbjct: 84 LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143 Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G Q+ TT S I + + L+ G ++E SSHGL Q+R + Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + FTNL RDH+DYH+T + Y AK Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKF 233 >gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 154/468 (32%), Gaps = 46/468 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+I+ S + ++S+D+R I+AG++FVA+ G+ DGH FI AI +GA Sbjct: 5 TLQEIIDATSGTCKGDVSLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A +V S+ + V+NT K A+ + ++A+TG+SGK++ Sbjct: 65 AAIVEKGRSV--------DGIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V + + + +P VE Sbjct: 117 KEMVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPE---------------HEACVVEM 161 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 GL Q + A+ + I + Sbjct: 162 GMRGLGQIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNE 221 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + + M + I + + + T + FD P+ GE Sbjct: 222 DDHFVKAMSSIAEGKTVTYGIHSNATVIGSH-LRYKKDGIKFTCKCYDEVFDVFLPMIGE 280 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 VY+AL A +G+ S+ + + L P R E V + Y +S+ Sbjct: 281 HNVYDALAAIAAGRVLGVKSSKIKKGLSDFTGTPMRQEIVAFEDI-VILNDAYNANPSSM 339 Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +K + + R I + G GD + +G++ + + T E Sbjct: 340 SESIKALGQLEGKRKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFT----FGEAAN 395 Query: 427 KIRAEI-IHGIPGFIEKGNRIEA-----IRTAIEMLNKQDVLVVAGKG 468 I E + G+ + A IR K DV++V KG Sbjct: 396 FIAKEAKLAGLEVHRCNSHLEMANAYNDIR------EKGDVILV--KG 435 >gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC 35316] gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cancerogenus ATCC 35316] Length = 452 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 155/403 (38%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + L +Q ++ I++V++D+R + AG +FVA+ G + D H F+ A Sbjct: 1 MISITLSQAAAILKGT-LQGQDLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P +VV +TR A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRKLDI---------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + T + Sbjct: 111 KTSVKEMTAAILGQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HEFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + A NL H++ + + AK ++ LP + AI Sbjct: 158 ELGANHQGEIAWTVSLTCPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPADGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T++ D L P Sbjct: 217 MNADNNDWLNWQSIIGSRKTWRFSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGASHDAIKTGLANLKAVPGRLFPIPLAENKLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G GD + +G+ A Sbjct: 337 VGSMTAAVQVLSEMPGYRVMVVGDMGELGDESEACHIQVGEAA 379 >gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] Length = 453 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 145/384 (37%), Gaps = 24/384 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS Sbjct: 19 GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P L+V +TR L A+ + + ++A+TG+SGK+SV I ++ G Sbjct: 70 RLLVDEPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + + + A+ G + D ++ Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + NL H++ + AK +F L + + + + H Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVMLNHKTV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R V + T+ + L PLPG V NAL A L ++ Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V L +L VPGR + + + Y S+ + + + R+ Sbjct: 297 VGATLEAVKSGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406 +VV G GD +G+ A Sbjct: 357 MVVGDMGELGDEAPECHRQVGEAA 380 >gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 452 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 99/465 (21%), Positives = 178/465 (38%), Gaps = 40/465 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +++ + K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA Sbjct: 5 TLSQVVEATAGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +V +++ + V+NT A + ++A+TG+SGK++ Sbjct: 65 GAIVEKGRAVE--------GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + +G + ++ P L + + + VE Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC-----VVEM 161 Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 GL Q + G TN+G HI+ +++A AK L LP+ S AI+ Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD Y K + + G + + + + + T + FD P+ Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VY+AL A +GI S + + L + P R E V + Y + Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S+ +K + + R I + G GD + +G++ + + T + Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFT----FGDA 393 Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I E G+ F + A + ++ K DV++V KG Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435 >gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus cereus Q1] gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus Q1] gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 168/467 (35%), Gaps = 40/467 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 10 EQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 70 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + E L L + R E V TNS I Y + ++E Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G GD++ +GK+ + T K+ Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400 Query: 429 RAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 A+I G N+ E ++ +++ +DV+++ A +G Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLIKASRG 447 >gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] Length = 437 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 107/411 (26%), Positives = 152/411 (36%), Gaps = 44/411 (10%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS------PIY-- 169 + VTGT GK+S F+ R+G T S D + P P Sbjct: 18 VGVTGTDGKTSTTRFLAAAMARAGGGPTARVTTVDASILRCDPDGSAPLREHGGPPPENH 77 Query: 170 ---LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 L G ++EA+S L G FTNLG DH+ H + + Y Sbjct: 78 RAFLRHLGQLRDEPGPRFAAIEATSTTLAIGFATAWPFRVGVFTNLGHDHLRAHGSYEHY 137 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 A LP A++ ADD V + + G + Sbjct: 138 L-ASKAQLFLSLPPGGFAVLNADDPTHALVAEVLPEGVQALWFAGPGRAEDRPVDLRLST 196 Query: 287 NKQQVTISVEGKDFDF--------------------LFPLPGEFQVYNALVAAGLCIAIG 326 E + FQ NA A +A+G Sbjct: 197 LPSSPGEPPEPRSAWTGQRLRVDCSLPAGSALPSTLTLRALPRFQTENAAAALLAALALG 256 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVDYAHTSNSLEMILKNIRTI 379 + +A + + GRFE + R+ +DYAHT +LE++L+ R + Sbjct: 257 LPAAPAAAAIAECEPPVGRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCAREL 316 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 GR VVFG GG D KR +G +A +AD VT DNPR EDP I ++ GIP Sbjct: 317 HPGRCFVVFGAGGSADPSKRAPLG-LAASVADRIFVTTDNPRDEDPSDIARQVCAGIPAG 375 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + + +R +AI AI D+++VAGKGHE + E+ D D Sbjct: 376 HPHVVELDRGQAIALAIAEAQPGDLVIVAGKGHERDQ-IRGKERTPFSDHD 425 >gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 258 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 26/238 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + +I + DSR I +G +F+ + G DG Sbjct: 1 MKLKELANLLMIK-------ETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQR 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L + +Q + +E +S GL R+ FTNL +DH+DYH T Y + K Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKECNFKIAVFTNLTQDHLDYHGTFDEYKHVK 220 >gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale DSM 17629] Length = 464 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 34/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L + + + I + I DSR ++ G++F+ I G + DGH FI Sbjct: 6 MK--NLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFI 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P QGA ++ P ++V +T + A+ ++ + Sbjct: 64 PNVFEQGAAIVLSEHELKDPAG--------PYVLVGSTTDAMKKLAAFYRKSLDIKVVGI 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + ++ G + P+ + S Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + HRL TN+G H+++ + AK FE ++P Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMP 221 Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + DD + V + + + + + Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPE 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FD +PGE VYNA+ AA + + +G+ A + +EK + GR F+ + G Sbjct: 282 GEFDAQIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIK--THGMT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414 + D + + + + GR I V G G+ ++ +G+ + + Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E AE + +R + + + + D ++V Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447 >gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 338 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 159/341 (46%), Gaps = 10/341 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P+ Sbjct: 1 MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + + LS A R Y + EN+ +AVTGT+GK++ + Q Q G +S +G Sbjct: 61 VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120 Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A F Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266 TNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238 Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+++ + V + + + + L G F V N L+A +A+ Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLAL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G +L+ +L V GR E T + VDYAHT Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTP 338 >gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale M104/1] Length = 464 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 166/470 (35%), Gaps = 34/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L + + + I + I DSR ++ G++F+ I G + DGH FI Sbjct: 6 MK--NLTFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFI 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P QGA ++ + P ++V++T + A+ ++ + Sbjct: 64 PTVFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGI 115 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + ++ G + P+ + S Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + HRL TN+G H+++ + + AK FE ++P Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMP 221 Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + DD + V + + + + + Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPE 281 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FD +PGE VYNA+ AA + + +G+ A + +EK + GR F+ + G Sbjct: 282 GEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIK--THGMT 339 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414 + D + + + + GR I V G G+ ++ +G+ + + Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E AE + +R + + + + D ++V Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447 >gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 466 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 88/412 (21%), Positives = 147/412 (35%), Gaps = 30/412 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL+ + + F N VS DSR I+ G ++ A+ G + DGH FI + Sbjct: 6 LKDLMRVVGGKFVKGNPGFSA-------NGVSIDSRTIKKGEVYFAMQGARYDGHDFIKE 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA-VT 121 AI +GA A+V S DF + + I+ ++T L FA K +A +T Sbjct: 59 AINKGAAAVVCSKD--KIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGIT 116 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I R G + G + T Sbjct: 117 GSNGKTTTKEILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDI-------------E 163 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + S G + D + AG TN+G H++ + + F K LF+ + Sbjct: 164 YAVFEMGTSLRGEIKILSDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETG 223 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 ++ + + + + + K + NK I +G Sbjct: 224 FIV---INNDDEFLMTAPQYVSRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVK 280 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P G F V NAL A I G + +E R E + T + I Sbjct: 281 IAMPAKGRFNVSNALAAVACAIGFGFSLDEIKCGIENFMPPKMRMETLVTGTDVVLINDA 340 Query: 362 YAHTSNSLEMILKNIRTITSGRII-VVFGCG---GDRDQGKRPIMGKIALDL 409 Y +S++ ++ + SG+ I +V G GD+ +GK Sbjct: 341 YNANPSSMKKAIQAVLQSYSGKKINLVLGDMLELGDKSADYHSELGKFINAH 392 >gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter sp. 638] gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterobacter sp. 638] Length = 452 Score = 147 bits (370), Expect = 5e-33, Method: Composition-based stats. Identities = 89/403 (22%), Positives = 156/403 (38%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + L+ +Q ++ ++ V++D+R I G +FVA+ G + D H F QA Sbjct: 1 MISITLRQAATVLNG-ELQGQDLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P LVV +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRKLDI---------DLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + T + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTEE-------------HEYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G +D + A NL H++ + + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVDLTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D D L P Sbjct: 217 MNADNNDWLNWQNIIGSRKTWRFSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATHDAIKTGLLNLKAVPGRLFPIQLAEKKLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV GD + +G A Sbjct: 337 VGSMTAAVQVLSEMPGYRVMVVGDMAELGDESEACHIQVGDAA 379 >gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] Length = 460 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 152/412 (36%), Gaps = 32/412 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I +SSDSR I +FVA+ G + DGH F AI GA A++ Sbjct: 7 EALSQHLSAHRVGDDITIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + I + G + TP + A+ Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHK 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ N+G H++ +Q A L AII ADDA+ Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQSGGTAIINADDAF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLP 307 + + +A S + + H + ++ G+ + PL Sbjct: 224 ADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLA 283 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 284 GRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANPV 342 Query: 368 SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 343 SVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium wasabiae WPP163] Length = 453 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 94/455 (20%), Positives = 167/455 (36%), Gaps = 43/455 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS Sbjct: 19 GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P L+V +TR L + + + ++A+TG+SGK+SV I ++ G Sbjct: 70 RLHIDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + + + A+ G + D ++ Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + NL H++ + AK +F L + + + + H Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVTLNHKTV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R V + + T+ D L PLPG V NAL A L ++ Sbjct: 237 WRFSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V L +L VPGR + + + Y S+ + + + R+ Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLADMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA--------IVTDDNPRSEDPEKIRAEI 432 +VV G GD +G+ A +A D +++ N E A I Sbjct: 357 MVVGDMGELGDDAPECHRQVGE-AARVAGIDCVLSVGTLSKLISQSNGNGEHFHDKAALI 415 Query: 433 --------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 H + + KG+R A+ + L + Sbjct: 416 SRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQEN 450 >gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] Length = 460 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 152/412 (36%), Gaps = 32/412 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I +SSDSR I +FVA+ G + DGH F AI GA A++ Sbjct: 7 EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + I + G + TP + A+ Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHK 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ N+G H++ +Q A L AII ADDA+ Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQSGGTAIINADDAF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLP 307 + + +A S + + H + ++ G+ + PL Sbjct: 224 ADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLA 283 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 284 GRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRI-RLIDDSYNANPV 342 Query: 368 SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 343 SVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 458 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 168/467 (35%), Gaps = 40/467 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 10 EQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 70 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + E L L + R E V TNS I Y + ++E Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G GD++ +GK+ + T K+ Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400 Query: 429 RAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 A+I G N+ E ++ +++ +DV++V A +G Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447 >gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia denticolens DSM 10105] gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia denticolens DSM 10105] Length = 549 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 188/534 (35%), Gaps = 54/534 (10%) Query: 3 LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++LI L + S + ++ DSR I + + V G + ++ Sbjct: 27 LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 83 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA A G V +S + ++V + R+ L+L ++ YG P + L V Sbjct: 84 DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGD-PASQLKV 135 Query: 121 TGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + SG + + + ++ LTTP + L + + Sbjct: 136 VGITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMM 195 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-------QQAYF 227 G+ ++ +E SS R+ G+++ G+F N+ DHI + Sbjct: 196 RQAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQ 255 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKV 282 A + + A + A+DA + +G + L V Sbjct: 256 IAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTV 315 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSAL----VL 333 A T+ D +F NA A + ++G+D Sbjct: 316 TASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQA 375 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGC 390 + + GR E ++ +G VDYAH S +L + RII+V G Sbjct: 376 LEAMEKVTISGRME-TFSSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGS 434 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NR- 445 G++ +R + + A D I T+++ +E E+I ++ + + +R Sbjct: 435 AGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRT 494 Query: 446 ---IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 EA+R A + V++ GKG+E N D ++ +L Sbjct: 495 HALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLLE 548 >gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Parascardovia denticolens F0305] gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Parascardovia denticolens F0305] Length = 546 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 188/534 (35%), Gaps = 54/534 (10%) Query: 3 LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L++LI L + S + ++ DSR I + + V G + ++ Sbjct: 24 LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 80 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA A G V +S + ++V + R+ L+L ++ YG P + L V Sbjct: 81 DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGD-PASQLKV 132 Query: 121 TGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 G +G + SG + + + ++ LTTP + L + + Sbjct: 133 VGITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMM 192 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-------QQAYF 227 G+ ++ +E SS R+ G+++ G+F N+ DHI + Sbjct: 193 RQAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQ 252 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKV 282 A + + A + A+DA + +G + L V Sbjct: 253 IAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTV 312 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSAL----VL 333 A T+ D +F NA A + ++G+D Sbjct: 313 TASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQA 372 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGC 390 + + GR E ++ +G VDYAH S +L + RII+V G Sbjct: 373 LEAMEKVTISGRME-TFSSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGS 431 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NR- 445 G++ +R + + A D I T+++ +E E+I ++ + + +R Sbjct: 432 AGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRT 491 Query: 446 ---IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 EA+R A + V++ GKG+E N D ++ +L Sbjct: 492 HALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLLE 545 >gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 176/468 (37%), Gaps = 40/468 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +Q++I E+I ++ + N++S+D+R I+ +FVA+ G +G+ + Sbjct: 4 NIQEVIEAVNGEII-------VKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAV 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA ++V ++ ++S ++ V +T+ L A K ++ +T Sbjct: 57 SAIEKGASVVIVD---EIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGIT 113 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S + G + I L + L+ Sbjct: 114 GSTGKTSTKDLIAAFLSGKYKVFKTQGNFNNE--------------IGLPLMIFELNKDY 159 Query: 182 VTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +S+ + + L GI + TN+G HI+Y +T++ KM + + Sbjct: 160 DVAVLEMGTSNFGEINTLAGIALPDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDD 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I +D K V H + + ++ K + + + Sbjct: 220 SCLVINCEND-MLKTVKDEDHKNINIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECH 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F + GE V NAL+ + +G+ + + L+ R EF+ N I Sbjct: 279 RFNLNMVGEHNVLNALLGIQISKDLGLKFEEMEKGLDNFKATSMRLEFIKHNKF-TIIND 337 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y +S++ + +++ T R I V G GD +G+ A ADI + T Sbjct: 338 SYNANPDSMKAAINVLKSYTGDRKIAVLGTMGELGDYANIAHKEVGEFAKGKADILLTTG 397 Query: 418 DNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S G + + + I++ M+ +D ++V Sbjct: 398 EYKDS---------YKEGFGTNTLVFDTKDDLIKSLNSMIKDEDTILV 436 >gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] Length = 458 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447 >gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] Length = 452 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 176/465 (37%), Gaps = 40/465 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +++ K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA Sbjct: 5 TLSQVVEATQGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +V ++ + VDNT A + ++A+TG+SGK++ Sbjct: 65 GAIVEKGRAV--------DGIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + +G + ++ P L + + + VE Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQAC-----VVEM 161 Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 GL Q + G TN+G HI+ +++A AK L LP+ S AI+ Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAQAKGELIRC-LPENSVAILN 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD Y K + + G + + + + + T + FD P+ Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VY+AL A +GI S + + L + P R E V + Y + Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S+ +K + + R I + G GD + +G++ + + T + Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFT----FGDA 393 Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I E G+ F + A + ++ K DV++V KG Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435 >gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli] Length = 452 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALTAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Pantoea ananatis AJ13355] Length = 452 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 26/405 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +++ + + +N+V++D+R + AG +FVAIVG + D H F AIA+G +A++VS Sbjct: 9 LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P +VV +TR A+ + + ++A+TG+SGK+SV Sbjct: 69 K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I ++ G + G + TP + + A+ G Sbjct: 120 SILRQCGETLHTAGNLNNDFGVPMTLLRLTPE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ A NL H++ + + A LP AI+ AD Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKA-KGEIFYGLPARGTAILNADSNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S + + + + D + PLPG + N Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +++ + V L++L VPGR V + + Y S+ + Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 + + R++VV GD + +G A D + T Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390 >gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] Length = 458 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 79/478 (16%), Positives = 164/478 (34%), Gaps = 31/478 (6%) Query: 6 LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I K EL + + +++ I VS DSR I+ G +F+ G K DGH F+ A Sbjct: 1 MINKSLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A + PI++V+N+ + L A+ + ++ +TG+ Sbjct: 61 IKSGAAASLWEKDVPNP------PEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V + G ++ P+ + + V Sbjct: 115 NGKTTTKDMVANLLSLKYKVQKTQGNFNSH----------IGLPLTIL---ALEKGTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + + A TN+G H+ +++ A L ++ Sbjct: 162 VLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQDLGSREGIATA-KMEIISGLKEDGL 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + Y ++ KE + + G + L + + Sbjct: 221 FVYYGEEPLLKERIDKDWKFKVETFGKGTENTLYPLDVKTTDSGSVFKVNAEPDTEVM-- 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ GE V NAL + + ++ + E ++L + R E + + Y Sbjct: 279 LPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQLKLTQMRMEMMEGKRGEKILNDAYN 338 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S+ + + + G+ I+V G G ++ +G+ + T Sbjct: 339 ASPTSMRAAIGLLSGLQGYGKKILVAGDMLELGPNEENYHYEVGQEVQKGKIDLVFTFGT 398 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476 + I G ++ E +L+ ++++ A +G + I+ Sbjct: 399 LARQTARGAAENI--GEKNVFSFDDKQELTEKLESILHGDEIILFKASRGMKLEEIIE 454 >gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis] Length = 873 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 106/569 (18%), Positives = 188/569 (33%), Gaps = 113/569 (19%) Query: 23 MQWRERKINEV-SSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + I + + +S ++V + + DGH + +A GA A++ Sbjct: 283 ASAPDVDIRNILTCNSISGGEDSLYVCVPSADGQCDGHDWADEASEMGAVAVIAGRPLPD 342 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 + + L A Y + + + V G+ GK++ A + + Sbjct: 343 ALLPVVVVDDV--------AAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMF 394 Query: 138 QRSGLSSFQIGPTST---------------------------------------ISSFAQ 158 + + IG Sbjct: 395 EETAERCGMIGTIEYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKY 454 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG---RD 215 TTP +++ KAL+ + +G + VE L R D + +TN Sbjct: 455 PQVPTTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEA 514 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQ 273 + A++ + + A+I DD E+ + A AG S + Sbjct: 515 GAEGGSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSADSR 574 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 I+ +K + + +V ++ + PL G V N L A IA G+ ++ Sbjct: 575 DADIYAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIV 634 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 +E + ++PGR E + + + VD A T L +L ++ S R+++VFGC G Sbjct: 635 AGIEAVDIIPGRCEII-DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT 693 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---------------- 437 +A D +T+D+P + P + A+++ G+P Sbjct: 694 ---------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGTAYPFLQ 744 Query: 438 --------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G +R +AIR AI M +DV+VVAGKGH + Sbjct: 745 DPHRVPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWD 804 Query: 478 GE----------KKMSVDCDIIREILGLI 496 G K D R L + Sbjct: 805 GAEFDLEERTTLKSWFDDRVECRNALSKL 833 >gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] Length = 460 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 172/463 (37%), Gaps = 32/463 (6%) Query: 11 FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E+ + + ++ + VS DSR I+ +F+A+ G + DGH F+ A +GA Sbjct: 6 FNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGAS 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+++S + I + + +V +T+K A + ++AVTG++GK++ Sbjct: 66 AVIISD----SECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + + + T V + Sbjct: 122 KDMISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKE-------------HDACVVEMGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + + K G TN+G HI +++ AK L + LP+ A++ D Sbjct: 169 RGFGQIKELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGD 227 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D++ K++ + G ++ +KV + + T + F L G Sbjct: 228 DSFVKKMGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGI 285 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 VY+AL A +G+D + L GR + + + I Y S+ Sbjct: 286 HNVYDALAATSTARILGVDVTKIQRVLSDFSPRAGR-QSLIEINGIKIIDDAYNANPLSM 344 Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 EM L++++ I++ +V G+ ++ +G A D+ I+T + + Sbjct: 345 EMALRSLKQISAKNKYLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDL----AK 400 Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I G+ EA + + DV ++ KG Sbjct: 401 FIAKGAKEKGMKMIYSFDTCKEAAECILNIAKAGDVFLL--KG 441 >gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 272 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 26/237 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + +I + DSR I +G +F+ + G DG Sbjct: 16 KLKELANLLMIK-------ETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDR 66 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 67 HQFVEDAVKNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 117 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G +G + S + T P L + Sbjct: 118 MKLIGITGTNGKTTTSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRN 177 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L + +Q + +E +S GL R+ G FTNL +DH+DYH T Y + K Sbjct: 178 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVK 234 >gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] Length = 459 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 171/468 (36%), Gaps = 40/468 (8%) Query: 10 DFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E++ +S +Q + V++D+R I G +F+A+ GN DGH F+ A GA Sbjct: 5 TLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACINGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +++S S + T +++V NT+ L A K ++AVTG++GK++ Sbjct: 65 SMVIISERSSFKAVPRT----VSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + + + TP V + Sbjct: 121 TKNMIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPE-------------TEACVVEMG 167 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 G G TN+G HI +Q+ AK L E LP + AI+ Sbjct: 168 MRGLGQIAELCRIAAPTIGVVTNVGTSHIGILGSQENIAKAKGELIES-LPDKGIAILNE 226 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD Y + G +H ++ +N + + + F + G Sbjct: 227 DDPYVIRMGDTFSGNIIGYGVNG--NYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLG 284 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 VYNAL A +GID + + L + R +F + I Y S Sbjct: 285 IHNVYNALAATATARVLGIDVNRIQKALSEFLPGAQR-QFFTEINGVTVIDDSYNANPLS 343 Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +EM +R + +V G G++++ +GKIA ++ ++T Sbjct: 344 MEMAFHAMRQVNGKHYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMIT--------V 395 Query: 426 EKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 K+ I G +E +A + +M+ DV++V KG Sbjct: 396 GKLSRHIAMGARDAGKTNIMECTTCEDAWQRLQKMIQSGDVVLV--KG 441 >gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 315 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 9/318 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ SR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + G TNL RDH+DYH T +AY AK +LF K + DDA+ Sbjct: 180 GLDQGRATALAFDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T+ + L G F + Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSA 330 N L A G + + Sbjct: 298 SNVLSAVGALLGLDYALD 315 >gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] Length = 454 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 87/470 (18%), Positives = 168/470 (35%), Gaps = 42/470 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I +L + I+ VS+DSR I +F+A+ G + D H F Q Sbjct: 1 MISLTLAQLAQITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA+A++V + + P ++V ++R + A+ + + I+ +TG+ Sbjct: 61 VVTGAKALLVERK---------LNVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGS 111 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 SGK+SV I G + + G + I RLT + + + ++ Sbjct: 112 SGKTSVKEMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIA 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++ L NL H+ + + AK +++ + + + Sbjct: 172 YTTNIVKPEAAL--------------VNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGT 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + D+YS++ + + + + D Sbjct: 218 AIV--NLDSYSEKWQFQPRQTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDI 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG + N L A+ L I++G + + K VPGR V + + Y Sbjct: 276 TLPLPGRHNIANVLAASALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHKVVLDDTY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD 418 S+ ++ + + RI+VV G GD + +G +A A D Sbjct: 336 NANDGSMIAAIQVLEKMPGYRILVVGDMGELGDYAEDCHQRVG-VAAKQAGLDKVF--SV 392 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 SE + ++ F K + + I + ++DV+ + KG Sbjct: 393 GQLSE----LISQFSECGEHFTVKADL---LTRLIPLAQQKDVVSILVKG 435 >gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 138/294 (46%), Gaps = 10/294 (3%) Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 7 ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 Y AK +LF KE ADD + + + +A + + Sbjct: 67 GDMARYKAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124 Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + + + L G F V N L+A +A+ ++ + Sbjct: 125 LETKNINYHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447 GKR +MG IA AD +VTDD+PR+EDP I A+I+ G I + NR E Sbjct: 244 GKRALMGGIAEQWADHLVVTDDSPRTEDPGVIVADILSGLVEIRHAVVIHNRAE 297 >gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] Length = 202 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 12/195 (6%) Query: 312 VYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YN L A + G+ ++ L++L V GR V + + +DYAHT +S + Sbjct: 1 MYNILAALIAVHNLTGLPLDELVPLLKRLVPVKGRMCRV-EAGQDFEVIIDYAHTPSSFQ 59 Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +I+ +R GR+I VFG GG+RD KRP G+IA + D I+TD++PR EDP + Sbjct: 60 LIMPPVRERIKAKGGRVIAVFGSGGERDTVKRPEQGRIAAEYCDTIILTDEDPRGEDPVE 119 Query: 428 IRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 + I G P +R AIR A + D +++ GKGHE I +G Sbjct: 120 LLEMIAEGCPDKKRGEELFIIPDRPTAIRKAFSLAQANDAVLLLGKGHENSIIGKDGAVP 179 Query: 482 MSVDCDIIREILGLI 496 + + L + Sbjct: 180 Y-NEYTEAQNALREM 193 >gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] Length = 455 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 71/453 (15%), Positives = 136/453 (30%), Gaps = 52/453 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L + I+ V+ DSR + +FV + G + DGH FI Sbjct: 1 MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A + + + N P++ VD+T + A K ++ + Sbjct: 54 NSAIANGAVATLWEKGHPNK------PGNFPLIEVDDTLAAMQELAKYYLNKVNPAVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPMTILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ ++ + + + + Sbjct: 214 DGEFIYNGDEPLLRQRAEKITQVKSTFG----FSDQDTIHALEFKSYMHHASFVTNSSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R ++ + + Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGESDDEIAASLSDFTPTANRMQWRKGDVGEDIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y + + +L + + GR I V G + + +A L Sbjct: 330 IYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDMLELGAASAELHASLADKL-------- 381 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 DP I ++G E N EAI+ Sbjct: 382 ------DPLVINEVYLYG----PEMKNLEEAIK 404 >gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 244 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 26/237 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56 KL++L + + KI + DSR I G +F+ + G DG Sbjct: 9 KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDR 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 60 HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110 Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173 + + +TGT+GK++ + +++I G + +G + S + T P L + Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L + +Q + +E +S GL R+ G FTNL +DH+DYH+T Y + K Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVK 227 >gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 511 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 93/422 (22%), Positives = 169/422 (40%), Gaps = 30/422 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ ++ ++ + +E +I ++ + + G IFVAI G DGH FI Sbjct: 1 MKLEKILNN-----LDIIDANFEIDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A GAE VV N + V+N+R L+ A Y + N++ Sbjct: 56 KKARELGAEIAVVED---------YSEENIKQIRVENSRIALADMARNFYEDPSKDMNVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177 +T T+GK++ A V I + ++ IG T + + LTTP + L + Sbjct: 107 GITATNGKTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSVLTTPESLTLQSYFRDM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +GVT V++E SS + +R I +F NLGR+HID H + + YF Sbjct: 167 KDKGVTDVTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHGSFENYFR-FKSRLIRH 225 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +++ AI+ ADD + + I + + K I+ + Sbjct: 226 AKEDALAILNADDEKIYSLRDKTKAQVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINRD 285 Query: 297 GK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 K +F+ G V N+LVA + + + ID+ + L+ V RFE Sbjct: 286 IKIKDFILEKSEFNIELGSVGYSSVMNSLVAIIIGLCLKIDTETIKRALKNFKGVERRFE 345 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 + I D+ +++ ++ ++ + + +++ G R + + + Sbjct: 346 LIFDEEFK--ILDDHFANEKNIDATMETLKEMDYKNLNILYAIRGKRGVEVNREITERLV 403 Query: 408 DL 409 Sbjct: 404 KW 405 >gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447 >gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] Length = 458 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447 >gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella putrefaciens 200] Length = 460 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 97/467 (20%), Positives = 165/467 (35%), Gaps = 50/467 (10%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E+++Q + I ++SSDSR + +FVA+ G + DGH F AI GA A++ Sbjct: 7 EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V +L N P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAL---------NIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S + + H + + G+ D PL Sbjct: 223 FADVMSVKARPYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGRI-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD------ 417 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401 Query: 418 ----DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454 E + ++I I + KG+R A+ ++ Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVD 448 >gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] Length = 460 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 87/462 (18%), Positives = 164/462 (35%), Gaps = 34/462 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +W ++ VS+D+R IQAG ++V ++G +GH F+ +A +GA A++ + Sbjct: 12 MTGGRYANPEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWA 71 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A T + P +VVD+T L A+R + ++ VTG++GK++ + Sbjct: 72 EA------EGTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIA 125 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G + P+ L + + V + S G Sbjct: 126 ALLSSQYRVQKTEGNLNNH----------IGVPLTLL---ALEEGTDIAVVEMGMSGFGE 172 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A TN+G H+ +++ AK+ + L D Sbjct: 173 IEQLTTIARPNAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYH--GDEPLL 230 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + + V++ G + I + E P+ G+ VYN Sbjct: 231 AELVPSLPLPQHVVTFGEGEDNDYYPTTVRIEAAGTSFVINELPRQTLFIPVLGKHHVYN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A + G+ + L +L V R E V T I Y + S+ L Sbjct: 291 ALAAIAVARFFGVSWENIAAALSRLQVTRMRTEVVKTKRGFTVINDAYNASPTSMRAALM 350 Query: 375 NIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIR 429 + + + I V G GD++ +G++ ++ D R I Sbjct: 351 LLTELDGYRKKIAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLARH-----IA 405 Query: 430 AEIIHGIPGFIEKG-NRIEAIRTAI-EMLNKQDVLVV-AGKG 468 K + A+ A+ + D++++ A +G Sbjct: 406 TAATPFFDQGQVKAFDDKAALAEAVLSVATPDDIVLLKASRG 447 >gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 460 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 171/463 (36%), Gaps = 32/463 (6%) Query: 11 FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E+ S + ++ + VS DSR I+ +F+A+ G + DGH F+ A +GA Sbjct: 6 FNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGAS 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+++S + I + + +V +T+K A + ++AVTG++GK++ Sbjct: 66 AVIISD----SECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + + + T V + Sbjct: 122 KDMISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKE-------------HDACVVEMGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + + K G TN+G HI +++ AK L + LP+ A++ D Sbjct: 169 RGFGQIEELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGD 227 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D++ K++ + G ++ +KV + + T + F L G Sbjct: 228 DSFVKKMGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGI 285 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 VY+AL A +G+D + L GR + + + I Y S+ Sbjct: 286 HNVYDALAATSTARILGVDVTKIQRVLSDFSPRAGR-QSLIEINGIKIIDDAYNANPLSM 344 Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 EM L++++ I++ +V G ++ +G A D+ I+T + + Sbjct: 345 EMALRSLKQISAKNKYLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDL----AK 400 Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I G+ EA + + DV ++ KG Sbjct: 401 FIAKGAKEKGMKMIYSFDTCKEAAECILNIAKAGDVFLL--KG 441 >gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] Length = 478 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 167/463 (36%), Gaps = 35/463 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++ Sbjct: 12 DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS + +N +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 72 VSRPPAA----TLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188 + I ++ ++ ++ P+ L + + G+ H Sbjct: 128 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 180 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A + Q + I N R+H ++ + +A + L Sbjct: 181 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRD 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + AG R + V + Q++ + G+ F PL G Sbjct: 234 AANGGEYARVWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLG 293 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 NAL A +A G+ ++ + L V GR + G I Y +S Sbjct: 294 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 353 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425 + + + T+ + R +V+ G G + +G A D + T E Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLAT-----GELA 408 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G F + I + + ++V KG Sbjct: 409 RHTVDAFGPGAQHFASAEDL---IEHGVPAIAPAATVLV--KG 446 >gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] Length = 478 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 168/463 (36%), Gaps = 35/463 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++ Sbjct: 12 DAAAWMTGAHLAGPDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A + +N +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 72 VSRAPAA----TLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188 + I ++ ++ ++ P+ L + + G+ H Sbjct: 128 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 180 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A + Q + I N R+H ++ + +A + L Sbjct: 181 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRD 233 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + AG R + V + Q++ + G+ F PL G Sbjct: 234 AANGGEYAPVWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLG 293 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 NAL A +A G+ ++ + L V GR + G I Y +S Sbjct: 294 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 353 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425 + + + T+ + R +V+ G G + +G A D + T E Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLAT-----GELA 408 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G F + I + + ++V KG Sbjct: 409 RHTVDAFGPGAQHFASAEDL---IEHGVPAIAPAATVLV--KG 446 >gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 458 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G +++ I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447 >gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 458 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447 >gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] Length = 458 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447 >gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 452 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 148/386 (38%), Gaps = 25/386 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ I+ V++D+R + AG +FVA+ G + D H F QA GA A++V+ + Sbjct: 17 LHGQDLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P +VV +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + T + + A+ G + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTKE-------------HDFAVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A NL H++ + + AK ++ LP AI+ AD+ + Sbjct: 175 RPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPDNGIAIMNADNNDWLNWQSIIGS 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S + + + T++ + L PLPG + NAL AA L Sbjct: 234 RKTWRFSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAAALS 293 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G + L L VPGR V + Y S+ ++ + + Sbjct: 294 MAVGATHDAIKTGLANLKAVPGRLFPVQLAENKLLLDDSYNANVGSMTAAVQVLSEMPGY 353 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406 R++VV GD + +G+ A Sbjct: 354 RVMVVGDMAELGDESEACHIQVGEAA 379 >gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 87/481 (18%), Positives = 184/481 (38%), Gaps = 52/481 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L +D + + + +++ K++ +S+DSR+I+ +F+A+ G K DGH F+ Sbjct: 1 MSL-NLTVEDILKATKGI-LIKGNFKD-KVDSISTDSRNIKKDDVFIALKGEKFDGHEFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA+ ++VS +L+D + I+ V +T K L A+ ++ + Sbjct: 58 KDAILKGAKGVIVSRDVNLEDKAF-------IIKVQDTLKALQDIANYYLKTLNAKVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + V ++ + G +S +N + P I L Sbjct: 111 TGSSGKTTTKNLVGRLLKLIGKV--------YVSKENFNNEIGVPLSI-----LEAEKDV 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + G + G TN+G HI +++A AK +F+ + + Sbjct: 158 DFLVLEMAMRGKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDY-IKE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ DD++S ++ +R H + + +GK Sbjct: 217 DGIAILNRDDSFSMKIYERLHIKKYTFGFEEGSDLRGLILD-KGKESYTLGLYFPDGKRL 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ N L A + +I +S ++ + R + I Sbjct: 276 TLSLPVYPLNIYRNLLSALLVLWSISPESIYRVKEDFDFTLPKQRLDVKRNKDGLVIIDD 335 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPI-MGKIALDLADIAIV 415 Y +S++ ++ + + GR + + G G+ + ++ D+ ++ Sbjct: 336 TYNANPDSMKTAIEYLELLDVPGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVL 395 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEM-LNKQDVLVVAGK 467 E+ + F + + E I++ + L +D +++ K Sbjct: 396 YG------------QEMKKALDEFEKIDWSKVHWSDNPEEIKSILRRSLQPKDTVLI--K 441 Query: 468 G 468 G Sbjct: 442 G 442 >gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces himastatinicus ATCC 53653] Length = 475 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 90/479 (18%), Positives = 164/479 (34%), Gaps = 47/479 (9%) Query: 6 LIYKDFPELINQLSIFPMQ--WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + K+ V DSR ++ G +F A+ G DGH + Sbjct: 1 MIPLSLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYARG 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++ + S D P LVV + + A + + ++A+TG Sbjct: 61 AVEAGAVAVLATRPVSTPDAP------VPALVVPDVVAAMGAIARAVVERLGTTVVALTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G +N + P AL ++ Sbjct: 115 SAGKTSTKDLIAQLLQRHGPTVWTHGS--------FNNEIGLP-----LTALRADTTTQH 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ D G N+G HI ++ A ++ Sbjct: 162 LVLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAED 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ ADD + + R G A + T+ Sbjct: 222 GGVAVLNADDPLVRAMASRTKARTVLFGEAGD-AHVRASNVRLADGGRPAFTLHTPTGCG 280 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + G+ + L + R E + + Sbjct: 281 DVTMRLYGEHHVSNALAAAAVAHETGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVN 340 Query: 360 VDYAHTSNSLEMILKNIRTITS----GRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410 Y S+ L+ + + + R V G GD + +G++A+ L + Sbjct: 341 DAYNANPESMRAALRALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLNVS 400 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + V + + ++ G + + A+ L DV++V Sbjct: 401 KLVAV-----GGREAAWL--DMGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452 >gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1] Length = 458 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 165/479 (34%), Gaps = 35/479 (7%) Query: 6 LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + SI ++ I+ VS+D+R I+ G ++V + G +GH F+ +A Sbjct: 1 MIIRSLADIQTMIPGSIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA A + S ++ P++ V+++ L A + I+ VTG+ Sbjct: 61 FEKGAAAALWSK------HEPNAPTDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + +G + + P+ L Sbjct: 115 NGKTTTKDMI----------ASLLGTVYRVQKTEGNLNNHIGVPLTLL---RLKEETEYA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + + TN+G H+ +++ AK + + L Sbjct: 162 VVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELGSREGIATAKFEIVKGLKRDGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D + N + + + ++ + F Sbjct: 222 IYH--GDEPLLQTRVENANLSHVQTFGMAPTNDYYPLDIRVQADGTTFKVNRWPNE-TFR 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL G V NAL A + +D + E +L V R E + + I Y Sbjct: 279 MPLLGRHHVMNALAAIAVARFAFVDIDHIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYN 338 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S+ L+ + +T + I + G G+++ +G++ ++T Sbjct: 339 ASPTSMRAALELLGQLTGYRKKIAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLT--- 395 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 E + I ++ E ++ DV+++ A +G + I+ Sbjct: 396 -YGERAKAIAERASKRFSEGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEII 453 >gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] Length = 458 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447 >gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Ames] gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A1055] gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Kruger B] gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Vollum] gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Australia 94] gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus anthracis CI] gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Ames] gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + E L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ A+I G N+ E ++ +++ +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447 >gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] Length = 482 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 163/461 (35%), Gaps = 29/461 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 + ++ + + I V++DSR +Q G +FVA++G + D H F+ +A+GA A+ Sbjct: 12 ADAAVWMAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAV 71 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS + S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 72 LVSRPPAA----MLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKE 127 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + + ++ ++ P+ L + + + + + + Sbjct: 128 MISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNARHK---LAVLELGMNH 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + + N R+H ++ + +A + L Sbjct: 178 PGETEVLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAAN 237 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + AG R + V + Q V + G F F PL G Sbjct: 238 GGEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHN 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A +A GI ++ + L V GR + G + Y +S+ Sbjct: 298 ARNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRA 357 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI 428 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 358 AIDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLAT-----GELARHV 412 Query: 429 RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 413 VDAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447 >gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella sp. W3-18-1] gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella putrefaciens CN-32] gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. W3-18-1] gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella putrefaciens CN-32] Length = 460 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 97/467 (20%), Positives = 166/467 (35%), Gaps = 50/467 (10%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E+++Q + I ++SSDSR + +FVA+ G + DGH F AI GA A++ Sbjct: 7 EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V +L N P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAL---------NIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S + + H + ++ G+ D PL Sbjct: 223 FADVMSVKARPYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGRI-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD------ 417 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401 Query: 418 ----DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454 E + ++I I + KG+R A+ ++ Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVD 448 >gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] Length = 450 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 85/467 (18%), Positives = 173/467 (37%), Gaps = 39/467 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L ++I E+I ++ E N++S+D+R IQ +F+A+ G +G+ + Sbjct: 4 NLAEIIKAVDGEII-------VKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTI 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QAI +GA I++ ++ +++ I+ V +T++ L A K ++ +T Sbjct: 57 QAIEKGASIIIID---DVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGIT 113 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V G +N + P Sbjct: 114 GSTGKTSTKDLVAAFLSGKYKVFKTQGN--------FNNEIGLP-----LMIFELSKDYD 160 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + S+ G G+ TN+G HI+Y +T++ KM + + K Sbjct: 161 IAVLEMGMSNFGEINKLASIALPDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKN 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 S + +D V + N ++ + +++ Sbjct: 221 SLIVNCENDMLKTIV--ECDKFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYR 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F + GE V NAL+ + G+ + + L + R E + + I Sbjct: 279 FTLNMVGEHNVLNALIGIQIARNFGLTFEEMEKGLGNFNATSMRLEVI-NKDKFTIINDS 337 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y +S++ L+ ++ + R I V G GD + +G+ A D ADI + T Sbjct: 338 YNANPDSMKAALEVLKNYSGSRKIAVLGTMGELGDYAEEAHIQVGEFAKDKADILLTTG- 396 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + G + ++ E ++ +M+ D +++ Sbjct: 397 --------EFKEYYKKGFGERTMVFESKQELMQRLTDMIKVNDTILI 435 >gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 284 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 134/280 (47%), Gaps = 7/280 (2%) Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 7 ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 Y AK +LF KE ADD + + + +A + + Sbjct: 67 GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124 Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + + + L G F V N L+A +A+ ++ + Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G+ Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283 >gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] Length = 454 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 94/468 (20%), Positives = 175/468 (37%), Gaps = 44/468 (9%) Query: 3 LQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L + + +++ FP+ ++ I +S+DSR+I+ G IFVA+ G+K DGH F Sbjct: 2 LSQIDLEQISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAE 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+ +GA A+++ S + P +V+NT K A + I+AVT Sbjct: 62 VAVEKGATALILDKK-----LSVLSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVT 116 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + +G IG +N + P + L + Sbjct: 117 GSVGKTTTKELIAAVLSTAGKVHKSIGN--------YNNEIGVPKTL-----LELDHTHH 163 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + G + + G TN+G HI +Q+A AK L ++ Sbjct: 164 YGVIEMAMRAKGEISLLTEITRPTIGVITNVGTAHIGRLGSQEAIAEAKCELLAQMSQDS 223 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + S + + + ++ G +G + + + T+ VEGK+F Sbjct: 224 IAILNH---DNSLLLETASTFWQGKTITYGLEGGDLSGQLINP------QTLRVEGKEFP 274 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P Y A +A + + L +++ GR + + Sbjct: 275 LPLPGRHNALNYLAALAVAKVLDLDWTP---LTEGLTVNLPSGRSRRHQLPNNILILDET 331 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTD 417 Y S+ L+ ++ R I V G G+R +GK DL D +V Sbjct: 332 YNAGLESMLAALQLLKETPGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLV 391 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463 ++P++E I G G E + ++ D ++ Sbjct: 392 NDPQAE-------HIAAGADGVATSCFKTHQEVVNYLQGLIKSGDRIL 432 >gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] Length = 450 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 158/471 (33%), Gaps = 42/471 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M++ +++ +LI ++I S DSR + G +++ I+G + DGH FI Sbjct: 1 MRVSEIVEATGGKLI-------CGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A++ + I+ V +T K L A L ++ + Sbjct: 54 KNAFENGASAVISGRDIDDSEHI--------IIKVKDTLKALQDMAHYLRKHRKVKVVGI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S V + ++ + G P+ + + Sbjct: 106 TGSVGKTSTRDMVYSVIKQQYKTLKTEGN----------YNNAIGLPLTILRLKDEQVMV 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++ L I + TN+G HI +++ AKM + + Sbjct: 156 LEMGMNHLKEMEELSMIACPDI----SAITNVGTAHIGELGSRENILKAKMEIINGMSDN 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I +D + + G V +GK + Sbjct: 212 SMLVINNDND----MLSTVEVGRLNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKVY 267 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG+ V NAL+A + + + I ++ +++ + R + V + I Sbjct: 268 FVDVPVPGKHFVMNALIAIAIGLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLIDG 327 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +S++ + + T + R I V G + +G +V Sbjct: 328 TYNASEDSMKSSIDVLATY-TRRKIAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAV 386 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I A G+ + E I +++ DV++ KG Sbjct: 387 ---GKESKYIIDAASKAGVKQICYCNSNEEVINYLGKIIQSNDVILF--KG 432 >gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Micromonospora sp. L5] gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora sp. L5] Length = 469 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 93/478 (19%), Positives = 167/478 (34%), Gaps = 50/478 (10%) Query: 6 LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + ++ V DSR + G +FVA G + DGH + A Sbjct: 1 MIPLTLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 I+ GA A++ + P+++V + + A + + P ++ +TG Sbjct: 61 ISAGAVAVLGTREV----------PGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + Q+ R G + G + TP Sbjct: 111 SSGKTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPE---------------T 155 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++ +E + G+ R + N+G H+ + + AK L E LP Sbjct: 156 RYLVMEKGARGVGHVRYLCDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + R R + + T+ Sbjct: 215 DGLAVLNADDPRVDAMASRTRARVVR-YGESEHADVRAVDVTLDGRGRPSYTLVTPEGSA 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G QV N+L AA + +G+ + L +L +V R V G + Sbjct: 274 PVRLGLTGRHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVID 333 Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 D Y S + L+ + ++ GR + V G GD + +G++A +L D + Sbjct: 334 DSYNANPASTGVALRALASMRGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLL 393 Query: 415 VTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 V E I G + ++ A+ L DV++V KG Sbjct: 394 VV-----GEPAAPIHEGATAVGNWGGESVL-LTDQAAAVEVLRSELRPGDVVLV--KG 443 >gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 86/461 (18%), Positives = 163/461 (35%), Gaps = 29/461 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 + ++ + + + V++DSR +Q G +FVA++G + D H F+ +A+GA A+ Sbjct: 12 ADAAVWMAGAHLAGPDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAV 71 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS + S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 72 LVSRPPAA----MLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKE 127 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + + ++ ++ P+ L + + + + + + Sbjct: 128 MISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHK---LAVLELGMNH 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + + N R+H ++ + +A + L Sbjct: 178 PGETEVLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAAN 237 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + AG R + V + Q V + G F F PL G Sbjct: 238 GGEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHN 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A +A GI ++ + L V GR + G + Y +S+ Sbjct: 298 ARNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRA 357 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI 428 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 358 AIDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLAT-----GELARHV 412 Query: 429 RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 413 VDAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447 >gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Ralstonia solanacearum CFBP2957] gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CFBP2957] Length = 482 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 165/460 (35%), Gaps = 29/460 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR +Q G +FVA++G + D H F+ +A+GA A++ Sbjct: 13 DAAAWMAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVL 72 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS + A S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 73 VSRPPAA----ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 128 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + ++ ++ P+ L + + + + + + Sbjct: 129 ISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNARHK---LAVLELGMNHP 178 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + N R+H ++ + +A + L Sbjct: 179 GETEVLATIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANG 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + AG R + V + Q V + G F F+ PL G Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNA 298 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +A GI ++ + L V GR + G I Y +S+ Sbjct: 299 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVIDDTYNANPDSVRAA 358 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 359 IDALATLPAPRWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLAT-----GELARHVV 413 Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 414 DAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447 >gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] Length = 460 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 156/413 (37%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I +SSDSR I +FVA+ G + DGH F AI GA A++ Sbjct: 7 EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERQLAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT+ + + + + S+ Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSL---- 173 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 ++ N+G H++ +Q A L AII ADDA Sbjct: 174 ----------VRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQPGGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S + + H + ++ G+ + PL Sbjct: 223 FADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 453 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 83/467 (17%), Positives = 173/467 (37%), Gaps = 41/467 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +++ EL+ ++ E ++S+D+R I +F+A+ GN +G+ ++ + Sbjct: 5 LNEVLKAIDGELL-------IKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI GA ++ + + ++ V++++ L A K ++ +TG Sbjct: 58 AIKAGATVAIID---EVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V G + I L + L S Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V +++ + HRL I + TN+G HI+Y +T++ K + + Sbjct: 161 IAVLEMGTNNFNEIHRLANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNN 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + Y +D + + ++ + + + ++ G+ Sbjct: 221 TLVVNYEND--MLQKVNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F + GE + NAL+ + GI + L R EF+ N+ Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ L ++T + R I V G G+ + ++G+ A+ ADI + T Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTTG- 396 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464 + R + G N E ++ ++ DV++V Sbjct: 397 --------EFREDYKSGFGKDTVTFNCKEELKNYLCNLIKDGDVILV 435 >gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 455 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 97/469 (20%), Positives = 169/469 (36%), Gaps = 36/469 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + R R++ ++ +DSR + G +F AI G DGH FI Sbjct: 1 MK--NLTLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ AQGA ++ A + P ++V++T K L A + ++ + Sbjct: 59 PQVYAQGALCVLCEKAPAEAQG--------PYILVESTLKALMAIAEFYRQQLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + G + T Sbjct: 111 TGSVGKTSTKEMIASVLSEKYRVLKTPGNFNNELGLPLTVFQLTEE-------------D 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + + G + HRL I + TN+G H+++ + AK +F+ + P Sbjct: 158 EVAVLEMGINHFG-EMHRLSKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAP 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D +K + + + A + I + Sbjct: 217 DGQIVL--NGDDDKLSALKEVRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTES 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F P+PG V NAL A + A+G+ + +EKL + GRF + + G + Sbjct: 275 FAVTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKLQALGGRFRIL--EAGGITVV 332 Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 D Y S++ L + GR I V G G+ +Q +G+ A L Sbjct: 333 DDCYNANPMSMKASLGVLAD-APGRKIAVLGDMGELGENEQQLHGEVGRFAAGLDIPVFF 391 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E+IR + I + E +R + + K D ++V Sbjct: 392 CVGALCRYMAEEIRR--LSPEKQVITADSVEEVLRLLPDSVQKGDTVLV 438 >gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51] gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 480 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 146/457 (31%), Gaps = 23/457 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + DSR ++AG IF A+VG + DGH +I A +GA ++ + Sbjct: 15 SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V++ + A + ++A+TG++GK++ V + + Sbjct: 75 ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRVHKNMENQ 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L P + + G + + G + + Sbjct: 135 NNELGLPM-TILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVITNIGTTHMELLGS 193 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + + L E A + + + R H R +++ Sbjct: 194 QQAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLEGRFHEPDLRGMNL 253 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAG 320 G +V +V + PLPGE V +AL A Sbjct: 254 TPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVSLPLPGEHNVLDALAALS 313 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I + + L + + R E I Y S++ L+ ++ Sbjct: 314 VGILLDVSLEEGCRGLAAMELSRMRLELHQGPEGSTLISDVYNANPTSMKASLQVLKERG 373 Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + + G G+ + +G+ +L ++T P +E+ + G+ Sbjct: 374 GASTLAILGEMYELGEASREGHYEVGQTVAELGISELITV-GPLAEEIA--CGALEKGLS 430 Query: 438 --GFIEKGNRIEAIRTA---IEMLNKQDVLVV-AGKG 468 +R AI+ A + LN+ +++ A +G Sbjct: 431 PQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRG 467 >gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinobacter aquaeolei VT8] gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Marinobacter aquaeolei VT8] Length = 465 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 99/468 (21%), Positives = 173/468 (36%), Gaps = 42/468 (8%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L L+ E + VS+D+R + G +FVA+ G + DGH F+ QA+ Q Sbjct: 7 LAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQ 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A VV + P LVV +T + L+ AS + ++A+TG+SGK Sbjct: 67 GAVAAVVDTEI--------TDVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSSGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++V I G + G + TP + Sbjct: 119 TTVREMTGAILAGMGPTLVTEGNLNNHIGVPLTLFRLTPD-------------HQFGAIE 165 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + AS G H + + TN G+ H++ + Q AK + + + + + Sbjct: 166 LGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVPADGAVVLN 225 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFP 305 D A+ + + V +G+ H + + A + + + + Sbjct: 226 RDDPAFDQWHARAGQRRVLGVSRMGHPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLG 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPGE + NAL+A C +G V L ++ V GR + + S I Y Sbjct: 286 LPGEHNITNALLALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASDLTLIDDSYNAN 345 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV------- 415 S++ L + + + R+ V+ GD + +G+ A + +V Sbjct: 346 PASMKAALDVLASYPAPRLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVVGAGGNG 405 Query: 416 --------TDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 T+ P E I A+ +G + KG+R A+ E Sbjct: 406 YGTGFGDETEFFPSHEQAVNAIVAD-RNGAMTVLVKGSRSSAMDRVAE 452 >gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 458 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 155/393 (39%), Gaps = 27/393 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +I++V +D+R + G +F+A+ G K D H F A+A+GA A++VS Sbjct: 19 GADTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSK--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P +VV +T L L + + + P I+A+TG+SGK+SV +I ++ G Sbjct: 70 RLPIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQCGNVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P V + A+ G + ++ +K Sbjct: 130 YTAGNFNNDIGVPLTLLRLEPE-------------HEFAVVELGANHVGEIAYTVNLVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + NL H++ + AK +F+ L + I + + K H Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKITHQRV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R + V H + + + PLPG V NAL A L ++ Sbjct: 237 WRFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V + L +L VPGR + N++ + Y S+ + + ++ R+ Sbjct: 297 VGATLENVRQGLSELKAVPGRLFPIRLNAQQLILDDTYNANVGSMTAAAQVLGSMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 +VV G G ++ +G IA A D Sbjct: 357 MVVGDMGELGTEEEDCHRQVG-IAAREAGIDKV 388 >gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] Length = 469 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 94/478 (19%), Positives = 168/478 (35%), Gaps = 50/478 (10%) Query: 6 LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + ++ V DSR + G +FVA G + DGH + A Sbjct: 1 MIPLTLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 I+ GA A++ + S P+++V + + A + + P ++ +TG Sbjct: 61 ISAGAVAVLGTREV----------SGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + Q+ R G + G + TP Sbjct: 111 SSGKTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPE---------------T 155 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++ +E + G+ R + N+G H+ + + AK L E LP Sbjct: 156 RYLVMEKGARGVGHVRYLCDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPS 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + R R + + T+ Sbjct: 215 DGLAVLNADDPRVDAMASRTRARVVRYGESERADVRAVDVTLDGRG-RPSYTLVTPEGSA 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G QV N+L AA + +G+ + L +L +V R V G + Sbjct: 274 PVRLGLTGRHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVID 333 Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 D Y S + L+ + ++ GR + V G GD + +G++A +L D + Sbjct: 334 DSYNANPASTGVALRALASMRGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLL 393 Query: 415 VTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 V E I G + ++ A+ L DV++V KG Sbjct: 394 VV-----GEPAAPIHEGATAVGNWGGESVL-LTDQAAAVEVLRSELRPGDVVLV--KG 443 >gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] Length = 458 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V +S I Y Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ ++ DV++V A +G Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447 >gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] Length = 463 Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats. Identities = 74/471 (15%), Positives = 145/471 (30%), Gaps = 35/471 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++D++ ++ + +I+ V +DSR I G +FV ++G + DGH +I Sbjct: 6 IRDILTAVKGRILGDFDNL-----DLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYITS 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + VD+T++ L A K ++AVTG Sbjct: 61 ALEGGAAACFTQRDRE------SYLPGKCYIRVDHTQRALRDLAVWYKKKFDIPVVAVTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ V + G +T S + Sbjct: 115 SVGKTTTKDMVAAVLGEHYKVLKTEGNLNT-------------DIGTCRTLFRLDKSYQI 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + + G + + TN+G HI++ +++ AK +F P Sbjct: 162 AVLEMGMNHPGEIEVMSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCL 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + D ++ + V + + Sbjct: 222 AVL--NGDDPLLRTLEGKLPEPILWCGGAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQV 279 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P G +Y L+AA + G+ + + R + + Y Sbjct: 280 EIPALGSHMIYPTLMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQRGEDITILNDTY 339 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 S+ ++ + SGR I V G G +G +V Sbjct: 340 NANPQSMRAAVEVLSKTHSGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAV-- 397 Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E + I +P + EA+ +++ ++V A +G Sbjct: 398 --GELAKNIYDAAREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRG 446 >gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] Length = 458 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V +S I Y Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ ++ DV++V A +G Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447 >gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] Length = 458 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVKKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V +S I Y Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ ++ DV++V A +G Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447 >gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] Length = 458 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V +S I Y Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ ++ DV++V A +G Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447 >gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] Length = 458 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 171/477 (35%), Gaps = 44/477 (9%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V I G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + + F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQSTGTHFKMNRDETSSFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLGGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468 K+ A+I G +R++A I+ L +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447 >gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Scardovia inopinata F0304] gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Scardovia inopinata F0304] Length = 540 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 89/523 (17%), Positives = 177/523 (33%), Gaps = 48/523 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++LI++D + I+P + +S D+R + + G + ++ + Sbjct: 32 LKELIHQDS--WTDTPEIWPAETAGMTFTRISYDTRQVDDHTLLFC-KG-RFHS-SYLDK 86 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A G V + YS + ++V + +K +SL +S Y ++P + V G Sbjct: 87 ADQDGLPCYVAENDYSQVTRAIG-------IIVTDIKKAMSLLSSAFY-RYPAKEITVIG 138 Query: 123 TSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176 +G + +G + + ++ LTTP + L + + Sbjct: 139 ITGTKGKTTTAYFTHAILNAYTGGKAALLSSVDNCLDGHTFVESDLTTPESLDLFRMMRQ 198 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 SQG+ ++ +E SS R+ G+ G+F N+ DHI + + Sbjct: 199 AVSQGMKYLIMEVSSQAYKVDRVYGLTFALGAFLNISPDHISPI---EHPSFEDYFYCKR 255 Query: 237 LLPKESPAIIYADDAYSKEVMKR-----------AHNAGCRVLSVGYQGKFIHLKKVCAI 285 + S A++ D ++ + + Sbjct: 256 QIALNSSALVLNADMVHSSLVTQDAGLRGIPVTTFRLENSNADRTADLTVTSIREDKGES 315 Query: 286 HNKQQVTISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 Q + F P G + + + + + + Sbjct: 316 PQFQARLKGKDLGRFSLSIPGDFNGANAAAALALISACGLDLTNPHVQQALQAMEKVTIA 375 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRP 400 GR E + + VDYAH S ++L I RII+V G G++ +R Sbjct: 376 GRMEIFSSPDKSLVGIVDYAHNGVSASVLLDYIDQAYGRLNPRIILVTGSAGNKAYDRRQ 435 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAI--- 453 + + A + I T+++ +E I ++ + +R +A++ A Sbjct: 436 EIVEAAQNRISRFIFTEEDTDTEPIIDICQQMDQAVSNPQVEHGIILSRSQALQEAFRDG 495 Query: 454 -EMLNKQDVLVVA--GKGHETVHIVTNGEKKMSVDCDIIREIL 493 E + V+A GKG+E N D I++ +L Sbjct: 496 KEHARQGKTTVIAAIGKGNERWIKHLNKHVVYQGDDRIMKGLL 538 >gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM 17244] gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM 17244] Length = 408 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 141/386 (36%), Gaps = 12/386 (3%) Query: 116 NILAVTGTSGKSSVASFVQQICQRS-----GLSSFQIGPT-STISSFAQDNRLTTPSPIY 169 ++ VTGT GKS+ + F++ I +SS I + S ++ LTTP + Sbjct: 11 KLIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSSGIISTIDTYDGSELSESLLTTPESLE 70 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 K L+ + + + E SS R+ G G F N+G DHI + + Sbjct: 71 FYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDVEHKDFDDYF 130 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 ++ + + + + Sbjct: 131 SSKIKLLENSEYIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADYKAMNIKRKNRFT 190 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + G+ ++ + G + V NA+ A +C + ID + V GR E Sbjct: 191 SFDLVHNGELKNYNLLMSGLYNVENAIAAIIVCEILCIDY-KYIFKGILGSAVKGRGEIY 249 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 T + VDYAH SL+ + ++ + I + G G + +R +G + Sbjct: 250 KTKDGKKTLIVDYAHNELSLKRYFEFVKDEFKGKKHICIIGAPGGKALNRRKEIGTLCYK 309 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLV-V 464 D I+T D+P E + I +EI+ IP + NR EAI+ A+ ++ ++ + Sbjct: 310 NCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIENRTEAIKEAVNSYKNEETIISI 369 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIR 490 GKG ET + D + Sbjct: 370 LGKGSETSQNYNGISRDYISDSVNAK 395 >gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] Length = 460 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 149/400 (37%), Gaps = 32/400 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + +SSDSR I +FVA+ G++ DGH F AI GA A++V + Sbjct: 19 GDDVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAF----- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P L+V + +K + + + + +A+TG++GK+SV + I Sbjct: 74 ----DIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + TP + A+ G + G+ Sbjct: 130 YTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHKG-EIDYTSGLVR 175 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + N QA L ++ AII ADDA++ + +A + Sbjct: 176 PHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYK 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 S + + H + ++ G+ + + PL G QV NAL AA Sbjct: 236 QLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAA 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +CIA+G++ + E L +L V GR + I Y S+ + ++ I Sbjct: 296 SVCIALGLNLTEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANPVSVGAAIAWLKEI 354 Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 + R +V+ G GD +G++A D T Sbjct: 355 SENRCLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCT 394 >gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 459 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 148/390 (37%), Gaps = 24/390 (6%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + Q I++V++DSR + G +F+A+ G + D H F A+ GA A++VS Sbjct: 20 VTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGALLVSR---- 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + N P +VV +TR + AS + + ++A+TG+SGK+SV I ++ Sbjct: 76 -----VLDINFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQ 130 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + G + P+ L V + AS G + + Sbjct: 131 CGNTLYTAGNLN----------NDIGVPLTLF---RLTEQHEFAVVELGASHVGEIAYTV 177 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + + NL H+ + + AK +F L K + I + ++ Sbjct: 178 EMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGTAIINMESNDWAHWQQVI 237 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 R G + + + + PLPG+ V NAL A+ Sbjct: 238 GDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANALAAS 297 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L I++G + L +L VPGR + + Y S+ + ++ + + Sbjct: 298 ALAISVGATLQDIRLGLSELKAVPGRLFPINLAEGKLLLDDTYNANVGSMTVAVQVLSQM 357 Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 R++VV G G++ +G+ Sbjct: 358 PGYRVLVVGDIGALGEQSADYHRQIGETVA 387 >gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 458 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 167/468 (35%), Gaps = 42/468 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 10 EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 70 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + E L L + R E V TNS I Y + ++E Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G G+++ +GK+ + T K+ Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------QDVLVV-AGKG 468 A+I G R++A E+ + +DV+++ A +G Sbjct: 401 GAQIAEGA-KINFPTERVKAYDNKEELAKELQAVVDVKDVVLIKASRG 447 >gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] Length = 460 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 153/413 (37%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I ++SSDSR I A +FVA+ G + DGH F AI GA A++ Sbjct: 7 ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT+ + + + Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTSADEFGIFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S H+ + H + +S G+ + PL Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] Length = 458 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 170/477 (35%), Gaps = 44/477 (9%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V I G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468 K+ A+I G +R++A I+ L +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447 >gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] Length = 462 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 165/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A GK ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A K + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] Length = 462 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A K + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYARERGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] Length = 458 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 172/479 (35%), Gaps = 34/479 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VESGAVATLWMKGVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V TNS I Y Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 +I P N+ E ++ +++ +DV+++ A +G + I+ Sbjct: 397 -YGRLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEII 454 >gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] Length = 458 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447 >gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 455 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 81/466 (17%), Positives = 163/466 (34%), Gaps = 32/466 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L L+ + + ++ +S D+R IQ G +FV G + +GH F+ QA +G Sbjct: 2 KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + P+L VD+ L A +H + +TG++GK+ Sbjct: 62 AGASLWQKD------EPNPPEGIPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + IG + PI + + V + + Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVAVLEM 162 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G + + TN+G H+ ++ AK + + + + Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQ-PDGLLFYD 221 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ +E++ + + + G + + + + + DF + Sbjct: 222 GDEPLLQELVAKEMHLNAV--AFGLEPNNLLYADHIHANANGSSFTTHGMIEGDFFISVL 279 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ QV N LVA + +G+ + + LE + + R + V + I Y Sbjct: 280 GKHQVKNTLVAMLISHQLGLKNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPT 339 Query: 368 SLEM--ILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S++ TI + +V+ G D + + +I D + PR Sbjct: 340 SVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCL--FGPRM 397 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ E G + + AI +++ N+ ++++ KG Sbjct: 398 THLYEVLKE-RFGAERLLYAEDDYTAIIEKLKLANESSIVLL--KG 440 >gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] Length = 457 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 34/460 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L I + + + + +D+R I +FVA+ G K DGH FI QA++ G A++V Sbjct: 11 LATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIV 70 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 A L + I VV NT K A + ++AVTG+ GK+S S + Sbjct: 71 DDAGRL-----YPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTSTRSLI 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + + + T G V + G Sbjct: 126 ATVLSQKYNVLQTEKNFNNEIGLPRTLLQLTGE-------------HGACVVEMGMRGLG 172 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + D + G TN+G+ HI+ +Q AK L E L + A++ DD Sbjct: 173 QIKELADIAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEA-LGTDGTAVLNGDDKRV 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ G V + + + T + D + G VY Sbjct: 232 AAMAEK--CKGKTVSFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVY 289 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A + +G+ + + L + VP R E + I Y S+ + Sbjct: 290 NALAAVAVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLEDL-TFINDAYNANPASMAEAV 348 Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIR 429 + ++ SGR I V G GD + + +G +A + AD I D + I Sbjct: 349 HTLMSVASGRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGD-----EATYIA 403 Query: 430 A-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+ + E ++ D +++ KG Sbjct: 404 DGAEQKGMKNVYKVRTHKEGAEILRKIAVAGDTILL--KG 441 >gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus suis GZ1] Length = 398 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 161/402 (40%), Gaps = 27/402 (6%) Query: 5 DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D++ D I Q + W + + + +S DSR + +F A G F+ +A Sbjct: 9 DILKADNNFRHIKQNNQTASTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKA 66 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 I G + V Y + P ++V + ++ +SL A +G + +LA T Sbjct: 67 IEAGLDFYVSEIDYEV---------GIPAIIVHDIKQAMSLIAMDFHGHPQKQLKLLAFT 117 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK++ A F I ++S + T+ + LTTP + L ++ Sbjct: 118 GTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+TH+ +E SS R+ G+ G F N+ DHI + + LL Sbjct: 178 GMTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S A+I EV+K ++ + + + + Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G F NA+ A C+ +G + + + VPGR E + G +++V Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 DYAH +S++ ++ + +G++ ++ G G++ + +R Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDF 387 >gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] Length = 460 Score = 143 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I ++SSDSR I A +FVA+ G + DGH F AI GA A++ Sbjct: 7 ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S H+ + H + ++ G+ + PL Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 453 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 82/465 (17%), Positives = 173/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q R TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIRELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + I+ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVIKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I + ++ + D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---KNKEELINDLLNIICEGDIILV 435 >gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A K + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL ++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLAEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + I ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVGAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A + + + Sbjct: 220 DSILIINGDDDFLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKG 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A A+ I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRALDINYKDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G+ + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + EI + N EA + ++ D++++ Sbjct: 398 GEFGEAYREGFGEINK--ENYKSFLNNKEAAKYIKNIIKDGDIILI 441 >gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 462 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A K + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTITLLGSMMELGSEGYRAHREVSEYARERGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] Length = 473 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 166/463 (35%), Gaps = 35/463 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++ Sbjct: 7 DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS + +N +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 67 VSRPPAA----TLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 122 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188 + I ++ ++ ++ P+ L + + G+ H Sbjct: 123 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A + Q + I N R+H ++ + +A + L Sbjct: 176 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPADGVAVYPRD 228 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + AG R + V Q++ + G+ F PL G Sbjct: 229 AANGGEFAPVWQAAAGSRRVLDFGIEAGAVTGTVVDTAEGQRIDVQAPGQRFAITLPLLG 288 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 NAL A +A G+ ++ + L V GR + G I Y +S Sbjct: 289 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 348 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425 + + + T+ + R +V+ G G + +G A D + T E Sbjct: 349 MRAAIDALATLPAPRWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLAT-----GELA 403 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G F + I + + ++V KG Sbjct: 404 RHTVDAFGAGAQHFASAEDL---IEHGLGAIAPAATVLV--KG 441 >gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. 18P13] Length = 454 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 156/461 (33%), Gaps = 40/461 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ + + + E+S+D+R I G +F+A+ G + DGH F QA QGA Sbjct: 5 TLTEIAQAVGGTLSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A++ + + P +VVD+T K L FA+ K + VTG+ GK++ Sbjct: 65 AVISDH----------VIPDCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTT 114 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + + + G + P L S V + Sbjct: 115 KNMIALVLSTHCKTLKTAGNLN----------NEIGLPKTLMGLDSTYK---AAVVEMGM 161 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S G G TN+G HI ++Q+ AK+ + + + + Sbjct: 162 SDFGEISRLSKAAAPSIGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVV--NG 219 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D +K + + G +++ + + + +G P GE Sbjct: 220 DDPYLIPLKTTLSRPVYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGE 279 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V N A + + G++ + L R + + I Y + +S+ Sbjct: 280 HNVMNGAAAFCIGMLAGMEPEEIAGALRTYQPDGMR-QNIQQIDDKTVILDCYNASPDSM 338 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIVTDDNPRSED 424 L + + +GR I V G + + R + G + D+ R Sbjct: 339 RASLSVLGQLSVTGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRY-- 396 Query: 425 PEKIRAEIIH-GIPGFIEKGNRIEAI-RTAIEMLNKQDVLV 463 I E G+P ++ EA+ L D ++ Sbjct: 397 ---IAEEAAKQGVP--VQHFTEKEALTEQLRRSLQPGDAVL 432 >gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] Length = 451 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 158/467 (33%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N +S Q+ R I V+ DSR I+ +F+ G DGH FI QA+ Sbjct: 1 MINVTLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A L + PI+ V++T + L A ++AVTG++ Sbjct: 61 KDGAVASFSEKGTELSEDVEG-----PIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L + Sbjct: 172 EIELLSTIA---------EPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + V + V H+ V + D ++ Sbjct: 223 YDGDEPLLTPHVKQIQQAKLISVGLGDANSLVCHVDDVETEGIGFTI-----NNDESYVL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ A + E++ + + R E T+ I Y Sbjct: 278 PILGIHNMKNAAIAIAVGHELGLPYATIKENIRHVQLTGMRMERHQTDDNVTVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + ++ GR I++ G Q +G + + T Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFT----Y 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E I + ++ E I+ ++ + D ++V KG Sbjct: 393 GTEAEYIFNTGQSYVETAKHFDDKSELIKELKAIVKENDKILV--KG 437 >gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 453 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSYKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ + D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435 >gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] Length = 458 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 90/477 (18%), Positives = 170/477 (35%), Gaps = 44/477 (9%) Query: 6 LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ + + I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V I G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETSSFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468 K+ A+I G +R++A I+ L +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447 >gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter sulfurreducens KN400] Length = 470 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 166/474 (35%), Gaps = 43/474 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++ E++ + VS+DSR ++ G +F+ + G + DGH ++ Sbjct: 5 LDDILGATGGEIVAGGETIGA-------SGVSTDSRTVEPGELFIPLRGERFDGHDYLDA 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A A+G +V + + ++ +VVD+T + L A+ + ++AVTG Sbjct: 58 ARARGVRLTLVERQWLA---GRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + I R+G G +N + P Sbjct: 115 SNGKTTTKEMLAAILARTGEGLKTEGNL--------NNLIGVP-----RMLFRLSGVHRW 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G + ++ G TN H++ + + AK LF L S Sbjct: 162 AVLEIGMSEFGEIDRLAEIVRPDVGIITNAYPAHLETLGSVEGVARAKGELFLR-LEPGS 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFD 301 A+ ADD + + G + +S G +G + + V Q+ T+ + Sbjct: 221 SAVYNADDP---LIARCPSPEGVKRVSFGLRGGDVTAEDVENLGKKGQRFTLRLPNGRVT 277 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 G V NAL AA +G+ + L + RF I Sbjct: 278 VTLHAFGSHNVANALAAAAAARVLGVAPEEIARGLGEFMPYARRFNLEEVGDV-VLIDDS 336 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ L +R I SGR + V G G + +G++A D V Sbjct: 337 YNANPASMAAALTTLREIKGSGRAVAVLGDMLELGIGAEEAHRQLGRLAATCVDRLYV-- 394 Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A + G + E + ++++V KG Sbjct: 395 ---LGAMAGTVAAGALEGGLEERHVTIAADHGEIVADLRRTAATGEMILV--KG 443 >gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter uraniireducens Rf4] gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter uraniireducens Rf4] Length = 468 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 95/467 (20%), Positives = 169/467 (36%), Gaps = 36/467 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+I + ++ VS+DSR + AG +FVA+ G + DGH ++ A+A+G Sbjct: 3 TIDEIIEATGGTRIGSGNDAVSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVARGVR 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A +V++ ++ + V +T + L A+ + ++ +TG++GK++ Sbjct: 63 AFLVAADRLAGKQP---PNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + I ++G G + + T + + Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLT-------------KRDRWAVLEMGM 166 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S G + G TN H++ + +A AK LF L + A+ AD Sbjct: 167 SEPGEIDRLAEMANPRIGVITNAFTAHLESMGSVEAVAKAKGELF-MRLKTDGWAVYNAD 225 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308 D + + AG + LS G +G + + + ++ + + T+ + G D G Sbjct: 226 DP---LISRCPAPAGVKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYG 282 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 VYNAL AA +G+D L+ LE+ RF + Y S Sbjct: 283 LHNVYNALAAAAAAHLLGVDPELIRSGLEEFTPYDKRFSLEEIRGV-VLVDDSYNANPAS 341 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L +R I R I + G G +G +A + E Sbjct: 342 MAAALVTLRDIREESRAIAILGDMLELGTGSVAAHREVGLLAATCVERLY-----AMGEM 396 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + A + G + E I + K D ++V KG Sbjct: 397 AETVAAGAVDGGLSPENIVVARTHEEIIADLRRRVAKGDNILV--KG 441 >gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] Length = 459 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 91/452 (20%), Positives = 165/452 (36%), Gaps = 40/452 (8%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + V++DSR + +F+ ++G K DGH +I Q GA + S Sbjct: 22 PDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVCLTSKPIPEV----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++VD+T K L A+ K ++ +TG+ GK+S V + + Sbjct: 77 --AGCSAVLVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSCVLSQKYSVLK 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 G + P+ + S + + S G + RL I + Sbjct: 135 TQGNFN----------NEIGLPLTVLNIDSS---HETAVIEMGMSGFG-EISRLTAIARP 180 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G HI+ +Q+ AK+ E L K ++ DD K + + Sbjct: 181 DIAIITNIGVSHIEKLGSQEGILKAKL-EILEGLHKNGLVVLNGDDPLLKPLKGKLPFRT 239 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G + I+V ++ P+PG VYNAL A I Sbjct: 240 VLYGMHGGSDYTASNYQ-TMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIE 298 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG- 382 + I +++ +++ PG N G +I D Y + S++ + + I+SG Sbjct: 299 MKIPMEIIINGIKQF--SPGNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISSGS 356 Query: 383 RIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GI 436 R I V G G+ + +G+ + I+T +D I + G Sbjct: 357 RSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITV----GQDSGMISQAVADSGNGE 412 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA++ + ++ D +++ KG Sbjct: 413 IKLRHFESNKEALKYILGIVMPGDYILI--KG 442 >gi|207108798|ref|ZP_03242960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPKX_438_CA4C1] Length = 207 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 10/193 (5%) Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + PL G + +YN L + + + LE + V GR E V + Sbjct: 21 RFCKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK 80 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VD+AHT++ ++ + ++ + +I +FG GGDRD+ KRP MG IA A Sbjct: 81 PL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCYAHQ 134 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T DNPRSE+ E I +I+ GI + + +R +AI A+E L +VL++ GKG Sbjct: 135 IILTSDNPRSENEEDIIKDILKGINDSSKVVIEKDRKKAILNALENLKDDEVLLILGKGD 194 Query: 470 ETVHIVTNGEKKM 482 E I + Sbjct: 195 ENTQIFKDKTYFF 207 >gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens str. 13] gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium perfringens str. 13] Length = 453 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 81/465 (17%), Positives = 174/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ N Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGN 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435 >gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 453 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ + D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435 >gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] Length = 454 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 176/468 (37%), Gaps = 40/468 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ +IN+ + +E + VS+DSR I +F+A+ G + D H F Q Sbjct: 6 LSQLLQVTHGRVINEGN------QELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQ 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A++V + N P ++VD+TR + A+ + + +++ +TG Sbjct: 60 VVDAGAAALLVDHQLDI---------NCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK+SV I + G + + G + P+ L + Sbjct: 111 SSGKTSVKEMTASILVQRGKTLYTAGNLN----------NDIGVPLTLFRLTHD---HQF 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A+ ++ + +K A NL H++ + + AK +++ L + + Sbjct: 158 AVIEMGANHPHEIEYTTNIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGT 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + D+YS + + R + + + T+ D Sbjct: 218 AIV--NLDSYSDKWQFKPRQTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDI 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG + N L A+ L I++G + + L VPGR V I Y Sbjct: 276 TLPLPGMHNIANVLAASALSISVGATLEEISQGLASTKAVPGRLYPVRLGDNKVVIDDTY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ + + T+ RI+VV G G +G IA A + V Sbjct: 336 NANDGSMIAAINVLATLPGYRILVVGDMGELGHYAHDCHQRVG-IAAKQAGLDKVLSVGQ 394 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 SE I ++ F K + + I + + DV+ + KG Sbjct: 395 LSE----IISQSSECGEHFTVKQDL---LTRLIPLTQQNDVVSILVKG 435 >gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 458 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 172/477 (36%), Gaps = 44/477 (9%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V I G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AGKG 468 ++ A+I G +R++A I+ +++ +DV++V A +G Sbjct: 397 -----YGRLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVDAKDVVLVKASRG 447 >gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 453 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 171/466 (36%), Gaps = 39/466 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +++ EL+ ++ E ++S+D+R I +F+A+ GN +G+ ++ + Sbjct: 5 LNEVLKAIDGELL-------IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI GA ++ + + ++ V++ + L A K ++ +TG Sbjct: 58 AIKAGATVAIID---EVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V G + I L + L S Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V +++ + HRL I + TN+G HI+Y +T++ K + + Sbjct: 161 IAVLEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENN 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + I Y +D + + H + + + ++ G+ Sbjct: 221 TLVINYEND--MLQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F + GE + NAL+ + GI + L R EF+ N+ Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ L ++T + R I V G GD + I+GK A+ AD I+T Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKAD-IILTT- 395 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + ++ G F K + ++ DV++V Sbjct: 396 ---GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435 >gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447 >gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] Length = 460 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I ++SSDSR I A +FVA+ G + DGH F AI GA A++ Sbjct: 7 ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S H+ + H + ++ G+ + PL Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] Length = 452 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 96/433 (22%), Positives = 153/433 (35%), Gaps = 50/433 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + + I+ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 16 ELHGADTDIDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKLDI-- 73 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P LVV +TR A+ + + P ++A+TG+SGK+SV I G Sbjct: 74 -------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECG 126 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + + G + TP + + A+ G + Sbjct: 127 NTLYTAGNLNNDIGVPMTLLRLTPE-------------HQYAVIELGANHQGEIAWTVSL 173 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + A NL H++ + AK +F LP AI+ AD+ Sbjct: 174 TRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPANGIAILNADNNDWLNWQSVIG 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + S + + + T+ D D L PLPG V NAL A+ L Sbjct: 233 DRKVWRFSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASAL 292 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A+G + L KL VPGR V + Y S+ + + + Sbjct: 293 AMAVGAPLQAIKAGLAKLKAVPGRLFPVHLAENQLLLDDSYNANVGSMTAAAQVLSEMPG 352 Query: 382 GRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 R++VV GD + +G+ A GI Sbjct: 353 YRVMVVGDMAELGDEAEACHQQVGEAAK-------------------------AAGIDKV 387 Query: 440 IEKGNRIEAIRTA 452 + G E I A Sbjct: 388 LSVGTLSEGISRA 400 >gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS155] gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella baltica OS155] Length = 460 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 153/413 (37%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I ++SSDSR I A +FVA+ G + DGH F AI GA A++ Sbjct: 7 ETLSQHLGMFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S H+ + H + ++ G+ + PL Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G++ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 456 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 174/466 (37%), Gaps = 36/466 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ +A Sbjct: 3 KMLELNLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG+ Sbjct: 63 FNKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGS 119 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G +N + P I Sbjct: 120 AGKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYD 164 Query: 184 HVSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +E GL Q + TN+G HI+ +T++ AKM + Sbjct: 165 VAILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNN 224 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + DD + V + + I K + + T+ K+ + Sbjct: 225 TLVVCGNDD----FLGSLPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE 280 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PGE + N ++ + +G+ + L + R E + + Sbjct: 281 FSLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDGFSILNDC- 339 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +++ + ++ I R I V G G + + +GK A + ++ Sbjct: 340 YNSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFG 399 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + SE+ I+ G + N+ E I+ + ++ D+++V Sbjct: 400 D-FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 438 >gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 161/464 (34%), Gaps = 32/464 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ + + P+ R +V +D+R +Q G +FVA+ G + DGH F+ QA+A+GA Sbjct: 7 KEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGA 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +VV P+ V +T + A + ++AVTG+ GK+S Sbjct: 67 AGVVV-----AAREETFAALPVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTS 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + + + T V + Sbjct: 122 TRQMIASVLSQKLRVWQTEKNFNNEIGLPKTLLGLTAE-------------HEACVVEMG 168 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 G + G TN+G+ HI+ +Q+ AK L LP A++ Sbjct: 169 MRGPGQIAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAA-LPATGTAVLNQ 227 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD + K G + G + ++ + F P+ G Sbjct: 228 DDWRVAAMAKL--CRGKVIGYGTSVGAAVRAGEIQTDDKGLSFICRCFDQTFRATVPVLG 285 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + VYNAL A +G+ + + L VP R E V I Y S Sbjct: 286 KHHVYNALAAVATARLLGLSETQMCKGLAAYAGVPMREELVHVGPY-TFINDAYNANPAS 344 Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +E ++ + + + I V G GD + ++GK + A++T P S Sbjct: 345 MEEAVQTLAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPAS--- 401 Query: 426 EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I G+ + + ++L V+++ KG Sbjct: 402 -YIAEAAEKAGMKAVYQVSDHQAGAAVLRDLLEPGAVVLL--KG 442 >gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] Length = 463 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 97/470 (20%), Positives = 171/470 (36%), Gaps = 40/470 (8%) Query: 10 DFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 E++ + + V DSR I+ G +FVA+VG + DGH F+ +A A+G Sbjct: 3 TLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFARG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A +V A P++VV +T L A+ H ++ +TG+ GKS Sbjct: 63 AVAALVDRA----HVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKS 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S V + + + + P+ L + S + Sbjct: 119 STKEVVWSVASQRFRAIRSQRSFN----------NEIGLPLSLMEIGSDTEVVVLEIGGA 168 Query: 188 EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 A + RL I + G TN+ H+ + +A A LP++ A++ Sbjct: 169 YAPG---EISRLAEIARPTIGVVTNVSHSHLARMGSLEAIA-ATKAELPASLPEDGVAVL 224 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP 305 DD + + + R + + V + + + V+G P Sbjct: 225 NGDDLRVRLMADKCRCRVIRYGL--APDCEVRAENVESHGLDGISFDLLVDGGRHHVHVP 282 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+ V+ L + +A+G+ L L + R V I Y Sbjct: 283 LLGQHSVHTVLAGVSVGLALGMSVEETLPGLRD-PSIQLRLLVVPAIGGATLIDDTYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S L + + + R I FG G ++ I+GK A + D T PR Sbjct: 342 PTSSLAALNLLAELPARRRIAAFGDMLELGSYEEEGHRIVGKRAAAVVDRL-FTM-GPR- 398 Query: 423 EDPEKIRAE--IIHGI-PGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 +I A+ + G+ P + + + + A++ + + DV++V KG Sbjct: 399 ---ARIIADEAVASGLAPDAVVAVDTKQDLIDALKETMREGDVVLV--KG 443 >gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 453 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ + D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435 >gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 90/477 (18%), Positives = 170/477 (35%), Gaps = 44/477 (9%) Query: 6 LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ + + I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V I G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + F Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468 K+ A+I G +R++A I+ L +DV++V A +G Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447 >gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] Length = 459 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 41/473 (8%) Query: 6 LIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + ELI + + V++DSR + +F+ ++G K DGH +I Q Sbjct: 1 MISFNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA + S + ++VD+T K L A+ K ++ +TG+ Sbjct: 61 NAGATVCLTSK-------QIPTVTGCTAILVDDTAKALRDLAAWYRRKFDIPVVGITGSV 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + + G + P+ + Sbjct: 114 GKTSTKDMVSCVLSQQYKVLKTQGNFN----------NEIGLPLTVFNIDYS---HEAAV 160 Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + RL I + TN+G HI+ +Q+ AK+ + EEL Sbjct: 161 IEMGMSGFG-EISRLTAIARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLV 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D +K + + + L ISV ++ Sbjct: 220 VL--NGDDPLLSSLKGKLSFRTVFYGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNVE 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 P+PG VYNAL A I + I +++ +++ PG N G +I D Y Sbjct: 278 IPVPGIHNVYNALAAIAAGIEMKIPMEIIINGIKQF--SPGNMRQSIINHNGIKIINDAY 335 Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD 418 + S++ + ++ I + R I V G GD + +G + +VT Sbjct: 336 NASPQSMQAAINVLQEISSESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTV- 394 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468 D I + E N EA++ +E++ D +++ KG Sbjct: 395 ---GLDSRMISQAVADYGNSQTEIHHFENNKEALKYILEIVMPGDYILI--KG 442 >gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Clostridium botulinum H04402 065] Length = 462 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 167/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMSEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A + + + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G+ + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE ++ EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYKEGFEEINK--ENYKSFLNNQEAAKYIKNIIKDGDIILI 441 >gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 458 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 89/468 (19%), Positives = 168/468 (35%), Gaps = 42/468 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 10 EQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAVATL 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 70 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + A+ ++ F P+ G+ V Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVALQATGTHFKMNRDENISFYLPVLGKHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + + L L + R E V T+S I Y + ++E Sbjct: 289 YNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 348 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G G+++ +GK+ + T K+ Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFT--------YGKL 400 Query: 429 RAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468 A+I G R++A ++ L +DV+++ A +G Sbjct: 401 GAQIAEGAKINFPIE-RVKAYDNKEELVKELQAVVDVKDVVLIKASRG 447 >gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 452 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 95/456 (20%), Positives = 168/456 (36%), Gaps = 42/456 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ I V++D+R + AG +FVA+ G + D H F QA GA A++VS + Sbjct: 17 LHGQDLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P +VV +TR A+ + + ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + T + + A+ G + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTHE-------------HEYAVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A NL H++ + AK ++ LP + AI+ AD+ + Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPDDGIAIMNADNNDWLNWQSIIGS 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S + + + T++ D + L PLPG + NAL AA L Sbjct: 234 RKTWRFSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAAALS 293 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G A + L L VPGR + + Y S+ ++ + + Sbjct: 294 MAVGASHAAIKAGLANLKAVPGRLFPIQLAENKLLLDDSYNANVGSMTAAVQVLSEMPGY 353 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI--------VTDDNPRSEDPEKIRAE 431 R++VV GD + +G+ A D + ++D + E A Sbjct: 354 RVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDASEVGEHFADKSAL 413 Query: 432 I--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 I I + KG+R A+ + L + Sbjct: 414 IERLKALITEKQIVTVLVKGSRSAAMEEVVHALQEN 449 >gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Ruminococcus obeum A2-162] Length = 456 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 164/470 (34%), Gaps = 38/470 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ E+ + +R+++ +++DSR I+ +FV IVG + D H FI Sbjct: 1 MK--NLTLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P +A+GA A + S ++ P + + ++ + + A + ++ + Sbjct: 59 PDVMAKGALATLSERELS--------DADYPYIQITSSLQAVKDIAEFYLQQLQLPVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVF---RLREDD 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S G K TN+G H++ + AK +F +LP Sbjct: 158 QIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLPS 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D ++ H + + + V I + F Sbjct: 218 GHIVL--NGDDDKLATVEGYHGVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAF 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D L P PG VYNAL AA + G+ + +E L + GRF + + Sbjct: 276 DVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLETIRGRF--KMIETENFLVVD 333 Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 D Y S++ L + GR + + G G+ + +G+ A + Sbjct: 334 DCYNANPMSMKASLDVLHD-GEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCIC 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 E I P + +R ++ + K D ++V Sbjct: 393 V----GELSLHIAEAARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILV 438 >gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 453 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 170/466 (36%), Gaps = 39/466 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +++ EL+ ++ E ++S+D+R I +F+A+ GN +G+ ++ + Sbjct: 5 LNEVLKAIDGELL-------IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI GA ++ + + ++ V + + L A K ++ +TG Sbjct: 58 AIKAGATVAIID---EVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V G + I L + L S Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V +++ + HRL I + TN+G HI+Y +T++ K + + Sbjct: 161 IAVLEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENN 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + I Y +D + + H + + + ++ G+ Sbjct: 221 TLVINYEND--MLQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F + GE + NAL+ + GI + L R EF+ N+ Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ L ++T + R I V G GD + I+GK A+ AD I+T Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKAD-IILTT- 395 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + ++ G F K + ++ DV++V Sbjct: 396 ---GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435 >gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] Length = 465 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 89/474 (18%), Positives = 173/474 (36%), Gaps = 36/474 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ E+ P + ++ E+++DSR + G +FVAI G K DGH FI Sbjct: 1 MK--NLTLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + A GA A + A ++ +++V +T + + A + P +++ + Sbjct: 59 PGSFADGALAALAE--------VAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 G+ GK+S V + + + G + P+ + Sbjct: 111 IGSVGKTSTKEMVAAVLAQKYRTLKTEGNFN----------NEVGVPLTAFRMREE---D 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + + G + HRL I + FTN+G H+++ ++ AK +F+ + Sbjct: 158 EIGVLEMGINHFG-EMHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDE 216 Query: 240 KESPAIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 K + DD S+ G + V I E Sbjct: 217 KGHVIVNGDDDKLSTISEVHGVAPVRFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTE 276 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 F+ + P G +YNAL + + G+ + +E + GRF + +S Sbjct: 277 AGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIKGDSYTV 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414 Y S++ + ++ R+ ++ G G++++ +G A + I Sbjct: 337 IDDC-YNANPGSMKASISILKEALGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLI 395 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVV 464 SE K + + P + E+L K D ++V Sbjct: 396 CCV-GALSEAMAKAAVDYMETHPEAHCLVRHYPTVEALMDDCGEILEKNDTILV 448 >gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447 >gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] Length = 454 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 165/463 (35%), Gaps = 32/463 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 6 EQMVNGTGLEEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 66 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 120 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + E L L + R E V TNS I Y + ++E Sbjct: 285 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 344 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G GD++ +GK+ + T +I Sbjct: 345 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400 Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P N+ E ++ +++ +DV+++ A +G Sbjct: 401 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 443 >gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] Length = 468 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 12 IKRMLKQV--EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 70 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 123 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 124 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 170 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 171 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 230 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 231 FVY--NGDEPLLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 288 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 289 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 348 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 349 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 406 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 407 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 457 >gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] Length = 458 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEETTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447 >gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] Length = 457 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 87/465 (18%), Positives = 162/465 (34%), Gaps = 37/465 (7%) Query: 12 PELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E++ ++ + + + V++DSR ++ G F+ +VG K DGH +I + QG Sbjct: 7 KEIVKAVNGVLISGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQGVSG 66 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 + + + ++ V++T L + +S K + +TG+ GK+S Sbjct: 67 CLTQKDTAGYEGKV-------VIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTK 119 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 V + + G + P+ + S + V + S Sbjct: 120 DMVSSVLNKKFNVLKTQGNFN----------NEIGVPLTVFNLES---THEAAVVEMGMS 166 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G +K TN+G HI+ ++Q AKM +FE L + + D Sbjct: 167 GFGEISRLTSIVKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVIL--NGD 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +K N + + I++ +++ P+PG Sbjct: 225 DNLLFGLKNLLNYRTVFYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 ++NAL A I + I ++E + + R + N Y + S+E Sbjct: 285 NIHNALAAIAAGIELNIPVKDIIEGIGEFSPGKMRLNIMDHNGIKIINDA-YNASPQSME 343 Query: 371 MILKNIRTI-TSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPE 426 + ++ I R I V G + D + MG + IV E+ + Sbjct: 344 AAINVLKDIAGDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAV----GENGK 399 Query: 427 KIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I + G + EA + ++ DVLVV KG Sbjct: 400 NIAEGALKAGAEEARVFHFKDNSEAGKFLLDFTKPGDVLVV--KG 442 >gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli CFT073] gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli CFT073] gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ABU 83972] gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 153-1] Length = 452 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGCHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] Length = 462 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 169/466 (36%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQ 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + I ++ ++ V++T K L A K ++A+T Sbjct: 58 TAIEKGASLCIVS---EINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G +N + P S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGN--------FNNEIGLP-----LMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDS 221 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + +D S + C++ + + + V E Sbjct: 222 ILIVNGDNDLLSNF--ESDKYKVCKIGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKG 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + ++ + ++ L R + + Sbjct: 280 FNVNVPGKHNVLNSLTAIACGKVLDMNYEDIQTGIKNLKATSMRLDIIKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ + R I + G G+ + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNVKGKRTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE ++ EI + N EA + ++ D+++V Sbjct: 398 GEFSEAYKEGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILV 441 >gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185] gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185] Length = 452 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 168/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] Length = 468 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 149/442 (33%), Gaps = 24/442 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++D+R +QAG +FVA+ G K DG F A+ GA A+++ S R + Sbjct: 28 FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMS 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V +T A K ++AVTG++GK++ G Sbjct: 88 GAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAAN 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + T V + G G Sbjct: 148 YNNEIGLPLTLLGMTGE-------------DTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H++ + + AK L + I+ ADDA + +A + + Sbjct: 195 TNVGETHMELLGSIENIARAKAELVAA-IAPGGIVILNADDARVVAMRAQAADGVRILTY 253 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 I + + + N+ + ++ G+ D+ PL G VYNAL A A+G+ Sbjct: 254 GIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALAALAAGFALGLSP 313 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L +L R+E + I Y + S+ L+ + GR I V G Sbjct: 314 QEMQAGLSRLAPPKMRYEVHHVGAW-TFINDAYNASPASMRAALETTARLYPGRRIAVLG 372 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G +G+ A ++T ++ +I Sbjct: 373 DMLELGAASAEGHRSVGRTAAAEGFAVVIT----YGDEARRIYEAAAAAGCLCRHAATHE 428 Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468 EA ML D ++ KG Sbjct: 429 EAANLLRGMLADGDTVLF--KG 448 >gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] Length = 458 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V + G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + E L L + R E V TNS I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E ++ +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447 >gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] Length = 454 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 41/477 (8%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E+I + + ++ ++S+D+R I G +F+A+ G DGH F QA+ GA A Sbjct: 6 LSEIIQAVRGSYGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAVA 65 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V L+VD+T + L AS + ++ +TG+ GK++ Sbjct: 66 VVTERPVD----------GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTTTK 115 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + S G + + +N + P + + + + + + Sbjct: 116 EMI--------WSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAA-----VIEMGMN 162 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G K TN+G HI+ +Q+ AKM + + + + D Sbjct: 163 HKGEISRMSTSCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLIL--SRD 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++ + SV + ++ + A TI + GE Sbjct: 221 DRILSKVQVYGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEH 280 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL A + A+G+D+A ++ L R + N + Y +S++ Sbjct: 281 NVKNALAAFCVGAALGMDNADIIAGLADFRPEGMRQNIIEENGVTYILDC-YNAAPDSMK 339 Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQG---KRPIMGK-IALDLADIAIVTDDNPRSEDP 425 L + + GR I V G + +G +G+ + DI + N Sbjct: 340 ASLSVLGQVSVRGRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNY--- 396 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH---ETVHIVT 476 I G +R E +L + D ++ G +G E + Sbjct: 397 -YIEGACDKGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEVYEAIK 452 >gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 462 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A + + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKG 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter segnis ATCC 33393] Length = 459 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 78/412 (18%), Positives = 137/412 (33%), Gaps = 22/412 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + VS+DSR +F A+ G D H ++ +A Sbjct: 1 MITLSLSQIASILEAQLIGDGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A VV N L+V ++R L A L K ++A+TG+SG Sbjct: 61 QGCVAAVVEHPTEG---------NIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q+ + + + P+ L + Sbjct: 112 KTTVKEMTASILQQCAVDFD------DVLFTQGNFNNDIGVPLTLL---RLTEKHKFAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + N+ H++ + A L AI Sbjct: 163 ELGANHIGEIAYTTALAQPDVALVNNVMAAHLEGFGSLDGVATA-KGEIFRGLTHHGVAI 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I Y ++ K + S + + + + + P Sbjct: 222 INQAHNYQQKWQKEIGQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSP 281 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V + LE +V GR + + Y Sbjct: 282 YLGEHNVSNALAATALAMNVGATLAQVKKGLETPSLVKGRLFPIHPCDNLLLLDDTYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI 414 S++ + ++ + R+ VV G GD +G+ A D+ I Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVI 393 >gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 453 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 174/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSYKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435 >gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] Length = 460 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 29/455 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ L + ++ V++DSR ++ G IFVA G + DGH F +A+ QGA +V Sbjct: 8 KLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVV 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ ++ ++ + + + ++ ++ VTG+ GK++ Sbjct: 68 VNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + G Q+N L P + + SS + + S Sbjct: 121 TYAALSGFGETIKTEGN--------QNNELGMPRTL-----MRLESSTEYAVIEMGMSHA 167 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + G T +G HI +Q+ AK+ + LP+ +P ++ DD + Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPF 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 ++ AH L V E F P G V Sbjct: 227 LRKAALPAHVRPVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +G D+ V+ L GR + V + I Y +S++ Sbjct: 287 ANALAAYCAATRLGCDAKRVIRGLSNFEQT-GRRQKVVDSEGVTVIEDCYNANPDSMKAA 345 Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + R + G G+ + +G++A + ++T E ++ Sbjct: 346 LAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGEQAKRTA 401 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + EA + + D ++V Sbjct: 402 VVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436 >gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] Length = 454 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 165/463 (35%), Gaps = 32/463 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 6 EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 66 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + + + V + + SS Sbjct: 120 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 225 LLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + E L L + R E V TNS I Y + ++E Sbjct: 285 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 344 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G GD++ +GK+ + T +I Sbjct: 345 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400 Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P N+ E ++ +++ +DV+++ A +G Sbjct: 401 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 443 >gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum GMI1000] gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum GMI1000] Length = 482 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 87/460 (18%), Positives = 166/460 (36%), Gaps = 29/460 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR + G +FVA++G + D H F+P +A+GA A++ Sbjct: 13 DAAAWMAGAHLVGPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 73 VSRPP----VGIPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEM 128 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + ++ +++ P+ L + + + + + + Sbjct: 129 ISAVFACAVGEAARLATAGNLNNDI-------GLPLTLFRLTAQHR---LAVLELGMNHP 178 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + N R+H ++ + +A + L Sbjct: 179 GETEVLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANG 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + AG R + V + Q++ + G F F PL G Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSAAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNA 298 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +A GI ++ + L V GR + + G I Y +S+ Sbjct: 299 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAA 358 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 359 IDALATLPAPRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLAT-----GELARHMV 413 Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 414 EAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447 >gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 460 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 158/461 (34%), Gaps = 32/461 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ L E ++ V++DSR ++ G IFVA G K DGH F +A+ GA +V Sbjct: 8 KLLAGLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVV 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ ++ ++ + + + ++ ++ VTG+ GK++ Sbjct: 68 VNHPVEGVPAEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + G Q+N L P + + S+ + + S Sbjct: 121 TYAALAGFGETIKTEGN--------QNNELGMPRTL-----MRLESNTEYAVIEMGMSHA 167 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + G T +G HI +Q+ AK+ + L + D Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVL--NYDDK 225 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQ 311 K + S+ + + + + + E F P G+ Sbjct: 226 FLRAAKLPAHVKPVWFSLADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKHN 285 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NAL A +G D V++ L GR + V + I Y +S++ Sbjct: 286 VANALAAYCAATRLGCDPRGVIKGLSNFEQT-GRRQKVVHSKGVTVIEDCYNANPDSMKA 344 Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L + R + G G+ + +G++A + +VT E+ ++ Sbjct: 345 ALAMFKEFPCKRRFALLGDMLELGELSREAHEELGRLAAESDLYCLVT----YGENAKRT 400 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + N EA + + D L+V A +G Sbjct: 401 AVVAAAKGVKTLHANNYREAADALLNRIEPGDALLVKASRG 441 >gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] Length = 462 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 82/464 (17%), Positives = 172/464 (37%), Gaps = 35/464 (7%) Query: 10 DFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 F E++N + +Q K N++S+D+R I IF+A+ G +G+ +I A GA Sbjct: 5 TFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNGA 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 ++ +D I T I+ V++T+K L A K ++ +TG++GK+S Sbjct: 65 SMCIIDEIKYRED---EIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTS 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + G +N + P +S + + + Sbjct: 122 TKDLLAAALSSKYKVFKTQGN--------FNNEIGLP-----LMIFKLDNSYDIAVLEMG 168 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ++ + K TN+G HI +++ AK+ + + + Sbjct: 169 MNNLNEIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGD 228 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--L 306 +D + N + G ++ + N + ++ GK F+ F + Sbjct: 229 ND----LLSGVKSNKFSIYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFHVEI 284 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG+ + N+L+A +G+++ + E L+ L R + + Y Sbjct: 285 PGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIKGKKFNILNDC-YNANP 343 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--DDNPR 421 +S++ + ++ + S R I V G G++ +G+ + ++T + N Sbjct: 344 DSMKAAIDVLKNVESSRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEYNKA 403 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464 E+ K + + E I+ + L + D ++V Sbjct: 404 FEEGFK-----SSTKAEYKAFDDYSEGIKYLVNGYLKEGDTVLV 442 >gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Clostridium botulinum F str. 230613] Length = 462 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + + ++ ++ V+NT K L A K ++A+T Sbjct: 58 MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVGAVLAEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A + + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora tropica CNB-440] gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinispora tropica CNB-440] Length = 471 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 94/474 (19%), Positives = 162/474 (34%), Gaps = 43/474 (9%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ ++ + V DSR + G +FVA G + DGH + A Sbjct: 1 MIPLSLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEGA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 I GA A++ + + P+++VD+ + L A + + P+ ++ +TG Sbjct: 61 IRAGAVAVL----------GTRVVAGVPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK+S + + R G + G + P Sbjct: 111 SSGKTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPE-------------TRY 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + A G + + + N+G HI +++ AK L LP E Sbjct: 158 LVLEKGARGVGHVSYLCEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPAEG 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + R R + V + T+ Sbjct: 217 LAVLNADDDLVAAMATRTRARVVRYGEAAE-ADVRAVDVVLDERGRPSFTLVTPEGRAPV 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 L G QV N+L AA + +G+ + L +L +V R V G + D Sbjct: 276 RLGLTGRHQVSNSLAAAAVARELGMPVTELATALGELGLVSSRRMDVFERVDGVTVIDDS 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417 Y S+ L+ + R I V G G +Q +G++A +L D +V Sbjct: 336 YNANPASMAAALRALAGFRRRRTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVV- 394 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I ++ ++ A+ L DV++V KG Sbjct: 395 ----GEAAAPIHEGATSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLV--KG 442 >gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 468 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 60/486 (12%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 12 IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 70 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 123 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V I G + P+ + + + V Sbjct: 124 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 170 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 171 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 230 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 231 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 288 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 289 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 348 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G G+++ +GK+ Sbjct: 349 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI------------ 396 Query: 419 NPRSEDPEKIR---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 DP KI A+I G N+ E +R +++ +DV++ Sbjct: 397 -----DPAKIAHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVL 451 Query: 464 V-AGKG 468 + A +G Sbjct: 452 IKASRG 457 >gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] Length = 458 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 60/486 (12%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V I G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G G+++ +GK+ Sbjct: 339 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI------------ 386 Query: 419 NPRSEDPEKIR---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 DP KI A+I G N+ E +R +++ +DV++ Sbjct: 387 -----DPAKIAHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVL 441 Query: 464 V-AGKG 468 + A +G Sbjct: 442 IKASRG 447 >gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS678] Length = 460 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 151/413 (36%), Gaps = 34/413 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E ++Q + I ++SSDSR I A +FVA+ G + DGH F AI GA A++ Sbjct: 7 ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P L+V + +K + + + +A+TG++GK+SV Sbjct: 67 VERELAF---------DIPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + I + G + I RLT + + + Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + G+ + N QA L + AII ADDA Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306 ++ + +A S H+ + H + ++ G+ + PL Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G QV NAL AA +CIA+G+ + E L +L V GR + I Y Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341 Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ + ++ I+ R +V+ G GD +G++A D T Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394 >gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CMR15] Length = 485 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 87/460 (18%), Positives = 165/460 (35%), Gaps = 26/460 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + ++ + + I V++DSR + G +FVA++G + D H F+P +A+GA A++ Sbjct: 13 DAAAWMAGAHLVGPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS + S +L V +TR L A+ + P ++AVTG++GK++V Sbjct: 73 VSRRLADM-PDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEM 131 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + ++ +++ P+ L + + + + + + Sbjct: 132 ISAVFACAVGEAARLATAGNLNNDI-------GLPLTLFRLTAQHR---LAVLELGMNHP 181 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + N R+H ++ + +A + L Sbjct: 182 GETEVLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANG 241 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 AG R + V N Q++ + F F PL G Sbjct: 242 GDYAPLWRAAAGTRRVLDFGIEGGAVSAAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNA 301 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +A GI ++ + L V GR + + G I Y +S+ Sbjct: 302 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAA 361 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429 + + T+ + R +V+ G G + +G A D + T E + Sbjct: 362 IDALATLPAPRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLAT-----GELTLHMV 416 Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 G F EA I + + ++V KG Sbjct: 417 EAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 450 >gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 81/468 (17%), Positives = 162/468 (34%), Gaps = 37/468 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ ++ + N + + + ++I V DSR I+ G++++ VG + DGH FI Sbjct: 1 MK--NMTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ +GA + + P + V++ L A + I+ + Sbjct: 59 PQVFDKGALCTLSEKDLNNPKG--------PYIKVESVATALKDIAEFYRKQLSCKIIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + G P+ + K Sbjct: 111 TGSVGKTSTKEIIASVLEEKFKVLKTEGN----------YNNEIGEPLTILKIRDEHEVA 160 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + S + HRL + + TN+G H++ + F AK +F+ Sbjct: 161 VIEMGI----SDFEEMHRLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASK 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D +K + + + +K +V I K+ Sbjct: 217 DCFVVL--NGDDDKLSNVKEVNGHAPVFFGIDTDRDVMAIKYESLGIQGTKVKIKYFDKE 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D + P+PG +YNA+ A + G+ + + L + GR TN Sbjct: 275 LDTVIPIPGYHMIYNAMAAVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTTNGITVIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S++ + + +GR + + G G+ + +G+ A+ DI + Sbjct: 335 C-YNANPMSMKASINVLSQ-ANGRKVAILGDMFELGENSKKLHKEVGQAAVGKVDILVCI 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + I I G + N+ + + + D +++ Sbjct: 393 -----GNLSKDIAEAAIEGGCNTLYFPNKADFEDNLSAYIKEGDTVLI 435 >gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLYPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 453 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 146/384 (38%), Gaps = 24/384 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 I++VS+D+R + +G +FVA+ G K D H + A+ GA A++VS Sbjct: 19 GESIDIDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + N P L+V +TR L + + + ++A+TG+SGK+SV I + G Sbjct: 70 HLPINVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + + + A+ G + D ++ Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + NL H++ + AK +F L + + + + H Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPADGVAIVNADSNDFPHWQVMLNHKTV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R V + + T+ + L PLPG + NAL AA L ++ Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V L +L VPGR + + + Y S+ + + + R+ Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406 +VV G GD +G+ A Sbjct: 357 MVVGDMGELGDEAPECHRQVGEAA 380 >gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LF82] gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces bingchenggensis BCW-1] Length = 480 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 171/478 (35%), Gaps = 41/478 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+I + P + RK+ V DSR ++ G +F A+ G + DGH F + Sbjct: 1 MIALSLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAAR 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A GA A++ + A + S +VV + + L A + + ++A+TG Sbjct: 61 AVADGAVAVLAARPVPAAAADAPVPS----IVVPDVQAALGALARAVVLRLDATVVALTG 116 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +R G + + G +N + P A+S + Sbjct: 117 SAGKTSTKDLIAQLLRRHGPTVWTPGSL--------NNEIGLP-----LTAMSADETTRH 163 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ D G N+G HI ++A A ++ + Sbjct: 164 LVLEMGARGKGHIRYLTDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAE 223 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ ADD + + R ++ A + T+ Sbjct: 224 GGVALLNADDPLVRAMATRTKARTVLFGEAADADVRAENVRL-ADGGRPSFTLHTPTGCS 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 + L GE V NAL AA + +G+ + L + R E + Sbjct: 283 EVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERRDGVTVVN 342 Query: 360 VDYAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ + + + GR V G G+ + +G++A+ L Sbjct: 343 DAYNANPESMRAALRALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLN 402 Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + V D G + + A+ L DV++V Sbjct: 403 VSKLVAVGGQEAAWLD----MGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 456 >gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E482] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQITDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU028] Length = 451 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 159/469 (33%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N + + ++ IN VS DSR I G +F+ G DGH FI QA+ Sbjct: 1 MINVTLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+ + + PI+ V++T L A ++AVTG++ Sbjct: 61 NDGAGAVFSEKENKYSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160 Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E G Q L + TN+G H+ +++ AK + L Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + V + + + H+ V + + + Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHY 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G + NA +A + +G++ ++ ++ + + R E +++ I Y Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ + + + GR I++ G Q +G+ D + T Sbjct: 336 NASPTSMKAAIDTLSGM-KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + N+ + I+T I + +D ++V KG Sbjct: 392 -FGKEASYIHDSGKIFVKEAKYFDNKEQLIQTLISQVKPEDKVLV--KG 437 >gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 168/476 (35%), Gaps = 58/476 (12%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 6 EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 66 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V I G + P+ + + + V + + SS Sbjct: 120 VTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + + L L + R E V T+S I Y + ++E Sbjct: 285 YNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 344 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G G+++ +GK+ DP KI Sbjct: 345 FHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI-----------------DPAKI 387 Query: 429 R---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 A+I G N+ E +R +++ +DV+++ A +G Sbjct: 388 AHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 443 >gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 468 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 32/453 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R + AG +FVA+ G DG F +A+ +GA A++V +A + + Sbjct: 31 ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV ++T + A K ++A+TG++GK++ + G + Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGSFT 210 TP T VE G+ Q G T Sbjct: 151 EVGLPLTLLGITPE---------------DTAAVVEIGMRGMGQIAALAPITAPSIGIVT 195 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H++ + + AK L +P I+ ADD + A + + Sbjct: 196 NVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAAMRSSAADGVRVMTYG 254 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + + + + ++ +G+ ++ PLPG V NAL A +G+ Sbjct: 255 ISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALAALAAGFVLGMTPQ 314 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L L R+E + I Y + +S+ L+ + GR I V G Sbjct: 315 EMQVGLTHLTAEKMRYEVHQIGAW-TLINDAYNASPSSMRASLETTAALYPGRRIAVLGD 373 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGN 444 G + +G+ A +L +VT E E G P + Sbjct: 374 MLELGAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAEA------AGCPACYHAAS 427 Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476 +A L D ++ G +G I+ Sbjct: 428 HADAAAYLRSHLMDGDTVLFKGSRGMRMEQIIA 460 >gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 87/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + E + + Q+ I VS D+R I+ G ++V I G + DGH F+ + Sbjct: 2 IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A + + N P++ V++T L + A + ++ VTG Sbjct: 60 AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V I G + P+ + + + V Sbjct: 114 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G + + ++ F Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 279 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 338 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + ++E + + + IVV G G+++ +GK+ + T Sbjct: 339 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFT-- 396 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +I P N+ E +R +++ +DV+++ A +G Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 447 >gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia fergusonii B253] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli M863] gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli STEC_7v] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TW10509] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 100/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLDAIKAGLANLKAVPGRLFPIQLVENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] Length = 452 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 100/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LPK AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPKNGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia sp. 4_1_40B] gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli H736] gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli] gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K12 substr. W3110] gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli DH1] gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Escherichia coli ETEC H10407] gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia coli DH1] gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1520] gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354] gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 455 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 120/394 (30%), Gaps = 34/394 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L + I+ V+ DSR I +FV + G + DGH FI Sbjct: 1 MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A + + + N P++ VD+T + A K ++ + Sbjct: 54 NSAIANGAVATLWEKGHPNK------PDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPMTILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ ++ A + + + + Sbjct: 214 DGEFIYNGDEPLLRQRAEKISQAKSTFG----FNDQDTIYALEFKSYMHHASFVTSSSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R ++ + + Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGETDDEIAASLSNFTPTANRMQWRKGDVGEDIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG 391 Y + + +L + + GR I V G Sbjct: 330 IYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDM 363 >gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 155-74] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 97/473 (20%), Positives = 174/473 (36%), Gaps = 43/473 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI-------- 414 S+ ++ + + R++VV G + +G+ A D + Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396 Query: 415 VTDDNPRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 ++ + E A I + + KG+R A+ A+ L + Sbjct: 397 ISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQEN 449 >gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei Ss046] gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii Sb227] gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ATCC 8739] gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SE11] gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sp. D9] gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046] gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227] gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli ATCC 8739] gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11] gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)] gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli BL21(DE3)] gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Escherichia coli 042] gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli W] gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 85-1] gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella flexneri CDC 796-83] gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli EC4100B] gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli EPECa14] gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E128010] gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LT-68] gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1180] gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1357] gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli KO11] gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H120] gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H489] gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TA007] gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 117-3] gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1167] gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 5216-82] gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 3594-74] gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Escherichia coli UMNK88] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 3431] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK966] gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. EDL933] gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. TW14359] gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1044] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIVWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 453 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 79/465 (16%), Positives = 174/465 (37%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ + +I VS+D+R I+ G +F+A+ G +G+ ++ A Sbjct: 1 MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NT + L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + V + + + K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPSAEYKIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLILGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK A + ++ + Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE+ I+ G + N+ E I+ + ++ D+++V Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435 >gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 87/463 (18%), Positives = 165/463 (35%), Gaps = 32/463 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + Sbjct: 6 EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 + N P++ V++T L + A + ++ VTG++GK+S Sbjct: 66 WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V I G + P+ + + + V + + SS Sbjct: 120 VTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ +++A AK+ + L D Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N ++ G + + ++ F P+ G+ V Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + + L L + R E V T+S I Y + ++E Sbjct: 285 YNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 344 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + + + IVV G G+++ +GK+ + T +I Sbjct: 345 FHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400 Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P N+ E +R +++ +DV+++ A +G Sbjct: 401 AEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 443 >gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 5 str. 8401] gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401] gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 4343-70] gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-218] gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-272] gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-227] Length = 452 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSMGKQSHAISTA 400 >gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580] gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580] Length = 491 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 174/474 (36%), Gaps = 39/474 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + E+ +++ + + R I VS+DSR + G +F+ + G + +GH+F QA Sbjct: 36 MITRTVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQA 95 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G A++ + P+++VD+T + L A + ++ VTG+ Sbjct: 96 FQEGVAAVLWNR------SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGS 149 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + +G + + P+ + + V Sbjct: 150 NGKTTTKDMI----------HAVLGTEYKVHKTEGNYNNHIGLPLTIL---AMPEDTEVA 196 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + TN+G H+ +++ AK+ + L + + Sbjct: 197 ILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTL 256 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + ++ N + + ++ V G + F Sbjct: 257 IYV-----GDEPLLTERLNQPPYDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFF 311 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NAL A + + A + E L KL V R E V T I Y Sbjct: 312 IPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYN 371 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ + + G+ I+V G G+ ++ +G+ + + T Sbjct: 372 ASPTSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFT--- 428 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEM-LNKQDVLVV-AGKG 468 E I + P ++++ ++ N D+++V A +G Sbjct: 429 -YGELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRG 481 >gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 456 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 174/474 (36%), Gaps = 39/474 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + E+ +++ + + R I VS+DSR + G +F+ + G + +GH+F QA Sbjct: 1 MITRTVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G A++ + P+++VD+T + L A + ++ VTG+ Sbjct: 61 FQEGVAAVLWNR------SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + +G + + P+ + + V Sbjct: 115 NGKTTTKDMI----------HAVLGTEYKVHKTEGNYNNHIGLPLTIL---AMPEDTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + TN+G H+ +++ AK+ + L + + Sbjct: 162 ILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTL 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + ++ N + + ++ V G + F Sbjct: 222 IYV-----GDEPLLTERLNQPPYDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFF 276 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NAL A + + A + E L KL V R E V T I Y Sbjct: 277 IPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYN 336 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ + + G+ I+V G G+ ++ +G+ + + T Sbjct: 337 ASPTSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFT--- 393 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEM-LNKQDVLVV-AGKG 468 E I + P ++++ ++ N D+++V A +G Sbjct: 394 -YGELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRG 446 >gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 477 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 88/488 (18%), Positives = 162/488 (33%), Gaps = 53/488 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++ + I+ +E + DSR + G +FVA+ G + DGH F+ Sbjct: 4 LTDVLEALTGKHIDMQKPL-------TFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGA 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTP----------------ILVVDNTRKFLSLFA 106 A GA +V + +R+ +P L V+NT + L A Sbjct: 57 AFQNGAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLA 116 Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 + ++ +TG+ GKS+ + ++ + + G + Sbjct: 117 RYWRRRLNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLN----------NEIGL 166 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 P+ L + + L D + G TN+G H + +Q+A Sbjct: 167 PLTLLRLGKGHERAVLEMGFYVPGEIALL---CDIAQPQVGVITNIGTVHAERAGSQEAI 223 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 A+ + I D M A + + + Sbjct: 224 --ARGKSELVQALPVGGYAILNHDDPWVRWMADKTQAQILYYGLTPEAHLWADEIETMGL 281 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + + F PL G V AL A + I G+ ++ L++ R Sbjct: 282 EGIRFRLHYRRESFSVRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR-SPTQLRL 340 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403 V ++S + Y + S L+ + + GR I V G G +Q +G Sbjct: 341 VAVRSSSGALILDDTYNASPESTLASLQILHEM-KGRRIAVLGDMLELGPYEQSGHEKVG 399 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIP--GFIEKGNRIEAIRTAIEMLNKQD 460 A ++AD+ + E + I G+ + +AI +L + D Sbjct: 400 VRAAEVADVLVAV-----GELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGD 454 Query: 461 VLVVAGKG 468 V+++ KG Sbjct: 455 VVLI--KG 460 >gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU045] Length = 451 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 160/469 (34%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N + + ++ IN VS DSR I G +F+ G DGH FI QA+ Sbjct: 1 MINVTLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+ + + PI+ V++T L A ++AVTG++ Sbjct: 61 NDGAGAVFSEKENKHSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160 Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E G Q L + TN+G H+ +++ AK + L Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + V + + + H+ V + + + Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVKNEGIHFTI-----NQKEHY 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G + NA +A + +G++ ++ ++ + + R E +++ I Y Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ + + ++ GR I++ G Q +G+ D + T Sbjct: 336 NASPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + N+ + I+T I + +D ++V KG Sbjct: 392 -FGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPEDKVLV--KG 437 >gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412] gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412] gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] Length = 452 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI39] gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI39] Length = 452 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] Length = 451 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 78/467 (16%), Positives = 157/467 (33%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ IN V+ DSR I+ +F+ G DGH F+ QA+ Sbjct: 1 MINVTLEQIKHWIPCEIDEQYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A L + PI+ V++T K L A ++AVTG++ Sbjct: 61 KDGAGASFSEKGTELSEDIEG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 SS + TN+G H+ +++ AK + L + Sbjct: 172 EIELLSSIA---------QPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + + V H+ + + F Sbjct: 223 YDGDEPLLKPHLEQLNKARLISVGLGNSNTLVCHVDDIETEGIAFTI-----NDKESFTL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ + +++ + + R E T + I Y Sbjct: 278 PILGTHNMKNATIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + ++ GR I++ G+ Q +G + A + T Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYT----Y 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + +P ++ E I+ ++ + D ++V KG Sbjct: 393 GDEARFIFNIGQNEVPTAQHFDDKSELIKELKIIVKENDKILV--KG 437 >gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] Length = 457 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 160/477 (33%), Gaps = 45/477 (9%) Query: 6 LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I K E+ + I + I VS DSR I G +FV G DGH F+ A Sbjct: 1 MIKKTLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I +GA A + PIL+V++T L A + + +TG+ Sbjct: 61 IEKGAAAAFWQKDVPNP------PLHLPILIVEDTLTALQELARSYRDELKIKVAGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + G +N + P I L+ + Sbjct: 115 NGKTTTKDMTANLLSLQYKVQKTEGN--------YNNHIGLPLTI-----LALEEDTEIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + A TN+G H+ +++ AK+ L + Sbjct: 162 VLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLGSREGIAEAKL-EIVNGLQENGL 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I Y D+ E +K + + ++ + + I+V F Sbjct: 221 VIYYGDEPLLDEKLKSYNGSAALRTFGRTGKNDVYPMDIKQNDSGSTFGINVSSGKFY-- 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G V NAL A G+ + E L + R E + S I Y Sbjct: 279 LPVLGTHNVLNALAAMIAAAHFGVPYEKMNEGFASLKLTNMRMELLEGQSGEKIINDAYN 338 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S+ ++ I + + I+V G G +++ GK + T Sbjct: 339 ASPTSMNAAIELIANLPGYKKKILVLGDMLELGPQEEDFHYSTGKSVDPEKVDYVFT--- 395 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AGKG 468 K+ I G + R+ A I + ++ + +++V A +G Sbjct: 396 -----FGKLGEYIAKGAKEVLPHE-RVAAFTDKQPLIEELKKHVDPETIILVKASRG 446 >gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] Length = 452 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 536] gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia coli 536] gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 60-1] Length = 452 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G + +G+ A Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379 >gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli AA86] gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] Length = 452 Score = 140 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] Length = 455 Score = 140 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 85/478 (17%), Positives = 167/478 (34%), Gaps = 38/478 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K E++ P + I V++D+R ++ +F+ + G +GH F+ QA Sbjct: 5 TAKKIAEMVKGTLTDPT-YENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFEN 63 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A++ + + +++VD+T L + + ++ VTG++GK Sbjct: 64 GVSAVLWNK------SEPNPPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + Q G + L+ P +A + Sbjct: 118 TTTKDMLHAVLQTQFRVHKTEGNFNNH-IGLPLTVLSMPEDTEVA------------VLE 164 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + S G A TN+G H+ +++ AK+ + L I Sbjct: 165 MGMSGKGEIDLLTRLANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYI 224 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + ++ + + +G L+ V + +I K F P+ Sbjct: 225 -----GDEPLLNKRSYSCRTKTFGADEGNDYQLEDVKQTEDGTHFSIKGIDKTFF--IPV 277 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+ V NA+ A I GI + L L V R E + + S I Y + Sbjct: 278 LGKHNVLNAIAAFAAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASP 337 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S++ ++ I ++ G+ ++V G GD +Q G + A + T Sbjct: 338 TSMKAAIELIESMEGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFT----YG 393 Query: 423 EDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477 + I A ++ E ++ E K D+++ A +G + IV + Sbjct: 394 KLGAFIAAGAHRHFDQERVSHFNDKAELLQAVAEKAEKGDLILFKASRGMKLEEIVKD 451 >gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Photorhabdus asymbiotica] Length = 459 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 81/406 (19%), Positives = 158/406 (38%), Gaps = 26/406 (6%) Query: 6 LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L + ++ + + + Q + I +V++D+R ++ G +F+A+ G + D H F A Sbjct: 4 LTLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDFSADA 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A++VS + N P +VV++TR + A + + ++A+TG+ Sbjct: 64 VKAGAGALLVSR---------VLAINCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK+SV I ++ G + + G + P+ L Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLN----------NDIGVPLTLF---RLTEQHEFA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + AS G + ++ ++ NL H+ + + AK +F L K + Sbjct: 162 VVELGASHVGEIAYTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLPEKGTA 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I + ++ R G + + + + Sbjct: 222 IINVESNDWAYWQQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEIN 281 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PLPG+ V NAL A+ L I++G + L +L VPGR + + Y Sbjct: 282 LPLPGKHNVANALAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEGKLLLDDTYN 341 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 S+ + ++ + + R++VV G G++ + +G+ A Sbjct: 342 ANVGSMTVAVQVLSQMPGYRVMVVGDIGALGEQSEDYHRQIGETAA 387 >gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] Length = 453 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 163/473 (34%), Gaps = 42/473 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I+ L + L+ + + +I+ V++D+R I G +FVA+ G K D H F A+ Sbjct: 1 MIHVSLQTLADALNA-ELIGTDTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVK 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G+ A++VS + + P LVV +TR L + + P ++ +TG+SG Sbjct: 60 AGSGALLVSK---------RLPVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + G + P+ L + + + Sbjct: 111 KTSVKEMTAAILRECGNVLYTAGNFN----------NDIGVPLTLLRLTAE---HDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + NL H++ + AK +F+ L I Sbjct: 158 EMGANHAGEIAYTTALARPETALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVI 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ++ ++ K R +G V T+ D P Sbjct: 218 NADNNDWANWQHKLNGKTVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG + NAL AA L +++G V L L V GR + + + Y Sbjct: 278 VPGRHNIANALAAAALAMSVGASPENVRAGLATLQSVKGRLFPIVISEGKTLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR- 421 S+ + + + R++ V G + +G+ D + R Sbjct: 338 VGSMTAAAQVLAEMPGYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRI 397 Query: 422 ----------SEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQ 459 ED + A + + G+R A+ + L + Sbjct: 398 ISDVSGCGEHLEDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQEN 450 >gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9] gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9] Length = 452 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 95/450 (21%), Positives = 171/450 (38%), Gaps = 39/450 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q V +DSR I+AG +FVA+ G + D H F+ +A+GA VV + L Sbjct: 16 QGDNTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLARGAAGAVVRCDFDLP--- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P++ V + R L A+ + + +TG++GK++V ++ + + Sbjct: 73 -----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVKEMLRGMLAQWLGD 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 + ++ P+ L + + +H + L G+ Sbjct: 128 EAVLATGGNFNNDIGM-------PLTLLGLRDTHRAAVIEMGM----NHAGELTYLSGLA 176 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N R HI + + +A AK +F L + A+I DD + Sbjct: 177 RPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAG-LAADGVAVINRDDPNRDLFVAA--A 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 AG R++ G +H + + ++T+ + P+PG+ + NAL A + Sbjct: 234 AGRRIVEFGLAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAACAVA 293 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+G+ ++ L+ VPGR F S I Y +S+ + + SG Sbjct: 294 SAMGVPLPAMVAGLQAFAGVPGRLAFRRAVSGLTVIDDTYNANPDSVRAAI-AVLAARSG 352 Query: 383 RIIVVFGCGGDRDQGKRPIMGKI--ALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 R +VFG G+ +G + +I A A D + + E Sbjct: 353 RRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLV---------TLGTVSREAAAAFGP 403 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + +EA+ A+ L D ++V KG Sbjct: 404 GALACDSVEAVLEALAPLGAADSVLV--KG 431 >gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri VA-6] Length = 452 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ H + R + + N A LP+ AI Sbjct: 158 ELGAN-HQGEIARTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G + +G+ A Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEDCHVQVGEAA 379 >gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 456 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 87/470 (18%), Positives = 169/470 (35%), Gaps = 38/470 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + P + ++ V +DSR + G +FV IVG + D H FI Sbjct: 1 MK--NLTLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + GA A + ++ P + V+++ + + A + ++ + Sbjct: 59 PQVMEAGALATLSER--------VLDNADFPYIAVESSLQAVKDIAEFYLKQLQIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + Sbjct: 111 TGSVGKTSTKEVIASVLNQKYHTLKTQGNFN----------NELGLPLTVF---RLRDGD 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S G + TN+G H++ + AK +F+ L P+ Sbjct: 158 EIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRPE 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D +K + + + K V TI + F Sbjct: 218 GHIVL--NGDDDKLITVKEYEKIKPVFFGMSNECQVYGDKIVSRGLKGMTCTIHLGDTAF 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG VYNAL AA + G+ + + +E L + GRF + + + Sbjct: 276 TVDIPMPGRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPISGRF-RMIETDKFLIVDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y S++ L ++ +GR I V G G+ + +G+ A D+ I T Sbjct: 335 CYNANPMSMKASLDVLQD-GAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICT 393 Query: 417 DDNPRS--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 R+ E ++ ++ I + +R + + D ++V Sbjct: 394 GKLCRNMAERAQRTNPDL-----KVIYEPDRESLLEHLEGYVQDGDTILV 438 >gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] Length = 457 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 166/470 (35%), Gaps = 54/470 (11%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 K + + + I+ + + I+ +++DSR+I G IF+A+ GN DGH F Sbjct: 9 KFRKIFSANLNSEIDVID-------DFLIDGITTDSRYINPGEIFLALRGNNFDGHDFAN 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+ +GA A++V S P + V +T A + ++A+T Sbjct: 62 IAVDKGAIALIVDH-----HISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAIT 116 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + G+ +N + P + ++ Sbjct: 117 GSVGKTTTKELISAVLSNYGIVHKTKEN--------YNNEIGVPKTL-------LELTRQ 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + +E GL++ L TN+G HI +++A AK L E+ P Sbjct: 162 HDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSKEAIAQAKCELLAEMPP 221 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + + + K G L + Sbjct: 222 DATAIFNHDNSLLVQTAKKVWKGETISYGLEGGDITGELLDNQTLRVEGMDFPL------ 275 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PLPG N L A + + +D +++ +++ GR + + Sbjct: 276 -----PLPGRHNALNYLGAIAVAKCLKLDCNVLM-QGISVNLPKGRSRRYQLSGDILLLD 329 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415 Y S++ L+ ++ I R + + G G++ +G+ A L D +V Sbjct: 330 ETYNAGLESMKAALELLKEIPGQRHLAILGTMKELGEKSAELHREVGETAKALGIDHLLV 389 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 D DPE I I G G + + + E I+ E++ D L+ Sbjct: 390 LVD-----DPEAIA--IADGALGMVTECLPTQEELIKRLTEIVQPGDRLL 432 >gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] Length = 452 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G + +G+ A Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379 >gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia fergusonii ECD227] Length = 452 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 95/473 (20%), Positives = 173/473 (36%), Gaps = 43/473 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA--------I 414 S+ ++ + + R++VV G + +G+ A D + Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHV 396 Query: 415 VTDDNPRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 ++ + E A I + + KG+R A+ + L + Sbjct: 397 ISTTSGVGEHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449 >gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 96/472 (20%), Positives = 160/472 (33%), Gaps = 48/472 (10%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +D++ E++ I VS+DS I+ +FV I+G + D H FI A Sbjct: 7 RDIVKATKGEVL-------CGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 IA GA A++ S + N P + V NT L + VTG+ Sbjct: 60 IANGAVAVLTSEHDE-------MTGNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + G +++ +P + Sbjct: 113 VGKTTTKEMIACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPD-------------DQIA 159 Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G + RL + +L TN+G HI+ +T+ K + + + K+ Sbjct: 160 VIEMGMSMRG-EMSRLSELVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDG 218 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I DDA + + F KV V I + +D Sbjct: 219 IVFINGDDAILNKHKSELRHRIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNK-GSYDA 277 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + GE V NALVA + GI+ ++ L V R + N I Y Sbjct: 278 RLNVLGEHNVRNALVAIAVAERHGIEVTEAIKALAGYEGVSMRQQITDVNGV-TIIDDSY 336 Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLADIAIVTD 417 + +S++ + + +GR I V GD+ + G +A D I+ Sbjct: 337 NASPDSMKAGIDVLCDYNNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELIL-- 394 Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A I G G + R E ++ L D ++ KG Sbjct: 395 -------FGTMAANIGDGFNGSYKLFKKREEINEYLLKNLKSGDAILF--KG 437 >gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 458 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 92/449 (20%), Positives = 160/449 (35%), Gaps = 35/449 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +S DSR +Q G+++ A+ G + DGH F+PQA + GA +VS + + A ++ Sbjct: 13 TGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHA 72 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ VD+ + +S A+ I+ VTG+ GK++ S + + + + G Sbjct: 73 AVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGNF 132 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGS 208 + T P + +E GL Q + G Sbjct: 133 NNELGMPYTLLQTEP---------------SCEVLVLEMGMDGLGQIADLARIARPKYGV 177 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----RAHNA 263 TN+G H++ T+ AK + E L E A + AD Y+ +++ Sbjct: 178 ITNVGVSHLERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIR 237 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + T++ G+ + G V NA AA + + Sbjct: 238 IVRFDGTAENSDVYATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGL 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382 GI V L + GR ++ Y + S+ L + + + SG Sbjct: 298 EFGIALDQVAAALSGVEPESGRQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSASG 357 Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHG--- 435 R I V G G+ + GK A D+ + R I G Sbjct: 358 RRIAVLGDMGELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRY-----IADAARKGGMA 412 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + IE + A T +++ DV++V Sbjct: 413 VKSVIEVADADAAATTVLDIAQPGDVVLV 441 >gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 1313] Length = 457 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 94/471 (19%), Positives = 166/471 (35%), Gaps = 37/471 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +++ E++ + + +S+DSR+I+ G +F+ ++G + DGH +I A Sbjct: 2 EILK--CEEVVKAVGGTLISGEVNTVFYNISTDSRNIKQGDLFIPLIGERFDGHNYIASA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA + ++ V +T K L A K + +TG+ Sbjct: 60 LEHGALGSLTQKETE-------PFPGKVLIKVSDTLKALRDLAVYYRQKFKIPFVGITGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S V + + G +N + P I + S Sbjct: 113 VGKTSTKEMVAAVLSKGFKVLKNQGN--------FNNEIGVPLTI-----FNLDKSHEAA 159 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G +K TN+G HI+ ++ A E L ++ Sbjct: 160 VVEMGMSGFGEISRLTSIVKPDIAIITNIGVSHIEKLGSKNNILKA-KMEIFEGLNEKGL 218 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 AI+ DD + + + I + GK++ Sbjct: 219 AILNGDDKLLYGLNNLLKFRTVFYGMEEGLDLRAYNVE-SLGEKGSTFDIEIRGKEYRVR 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+PG VYNAL + I +GI ++E +E+ R + + N Y Sbjct: 278 IPVPGIHNVYNALAGIAVGIELGIPPEKIVEGIEEFSPGKMRLDIINYNGLKIINDA-YN 336 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S+E + ++ I+ GR V G G+ + +GK A IV Sbjct: 337 ASPQSMEAAIDVLKDISGEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGE 396 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 RS +R + G E + ++A + E + DVL+V KG Sbjct: 397 YRS---NIVRGAVEAGAKEEKVFEFKDNMDAAKFLKEFVKSGDVLLV--KG 442 >gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15] Length = 452 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 460 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 86/455 (18%), Positives = 159/455 (34%), Gaps = 29/455 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ L + ++ V++DSR ++ G IFVA G + DGH F +A+ QGAE +V Sbjct: 8 KLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVV 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ ++ ++ + + + ++ ++ VTG+ GK++ Sbjct: 68 VNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G + G Q+N L P + + SS + + S Sbjct: 121 TYAALSGFGETIKTEGN--------QNNELGMPRTL-----MRLESSTEYAVIEMGMSHA 167 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + G T +G HI +Q+ AK+ + LP+ +P ++ DD + Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPF 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 ++ AH L V E F P G V Sbjct: 227 LRKAALPAHVRPVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +G D+ V+ L GR + V + I Y +S++ Sbjct: 287 ANALAAYCAATRLGCDAKRVIRGLSNFEQT-GRRQKVVDSEGVTVIEDCYNANPDSMKAA 345 Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + R + G G+ + +G++A + ++T E ++ Sbjct: 346 LAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGEQAKRTA 401 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + EA + + D ++V Sbjct: 402 VVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436 >gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU121] Length = 453 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 159/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + Q+ R I V+ DSR I+ +F+ G DGH F+ QA+ Sbjct: 1 MINVTLKQIKAWIDCEIDEQYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A SL + PI+ VD+T + L A ++AVTG++ Sbjct: 61 KDGAGASFYQKDVSLSENIEG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT H Sbjct: 116 GKTTTKDMIESVLNTEFKVKKTQGN----YNNEIGMPLTILDLDKDTDISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ A L Sbjct: 172 EIELLSTIA---------EPDIAVITNIGESHMQDLGSREGIAQA-KSEITIGLKPNGTF 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I D+ K +++ A C + + + TI+ + + + Sbjct: 222 IYDGDEPLLKPHVEQIQQANCISIGLEQGNSLVCSVNEEIDTEGIAFTINHQQQ---YEL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ + +++++ + R E T + I Y Sbjct: 279 PILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRVKLTGMRMERHETEQQVTVINDAYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S++ + + + +IIV+ GD Q +G + ++T Sbjct: 339 SPTSMKAAIDTLSNMNGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLIT----FG 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + ++ + I +++ +D +++ KG Sbjct: 395 SEATFIYNTGKQYVDEAHHFNDKDKLISHITQIVQPEDKVLI--KG 438 >gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei 53G] Length = 452 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLNAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] Length = 461 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 172/469 (36%), Gaps = 36/469 (7%) Query: 6 LIYKDFPELINQ--LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L + ++ +I Q + I +S+DSR I +F+A+ G + D H FI Sbjct: 4 LSLGNIVQITKGKLSNIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDFIADV 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G+ A++V+ + + P L+V +T + A+ + I+A+TG+ Sbjct: 64 KEKGSVAVLVNREIDV---------DCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK+SV I + G + + G + P+ L Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLN----------NDIGVPLTLF---RLAPEHRFA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKES 242 + + A+ G + ++ +K + NL HI+ + + AK +F + Sbjct: 162 VIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHLKEQGTA 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + ++D E A + + ++ T+ + Sbjct: 222 IINLDSNDLPLWEHHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEV 281 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG + NAL A+ L ++ G + L L VPGR V + + Y Sbjct: 282 TLPLPGRHNIANALAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGKMVLDDTY 341 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTDDN 419 S+ L+ + + +I V G + +D K +G+ A + +++T Sbjct: 342 NANDGSMIAGLQVLSQLPGYKIFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLTV-- 399 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I E G F K + + I +L + DV+ V KG Sbjct: 400 --GEHSHFISDE-NQGGQHFAFKADL---LAQLIPLLQQHDVVSVLVKG 442 >gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] Length = 468 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 88/496 (17%), Positives = 155/496 (31%), Gaps = 67/496 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ + + L+ Q R + V DSR +Q G +FV + G + DGH F Sbjct: 1 MKM------ELSRIATVLNAVGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA A++ D P+L+V +T K L A G ++AV Sbjct: 55 ADAVRKGAVAVLAQRPLPEVD-------GAPVLLVRDTFKALGDLAVAWRGSVQSRVVAV 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + Q + + + + Sbjct: 108 TGSAGKTTVKELIAQTLAAEMSVAKNHKNLNNQIGLPLSMLAASGE-------------E 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + V S G + N+G H++ + + AK L + Sbjct: 155 DVWVMEVGISRQGDMEELAPIASPDLAVIHNIGPAHLEGLGSLRGVAEAKAHLLTSVRRG 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A I D + R +S + + + +E + Sbjct: 215 G--AAIVNRDYPELWEAAQRIFPSVRAMSTQNEKAPYFCTYLGPSQQGGVFLLRLEDERL 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P G N + AA +G+ + +++ L K + RF G I Sbjct: 273 EVDLPFLGAHFAENVVAAASAAYLLGMSAGSIVQALAKAQLPDQRF-AAHHLGFGTLIDD 331 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 Y S+ ++ + R +V+ G +G A A+ + Sbjct: 332 TYNANPLSMSRAIQAATELAGNRPLVLV-------LGDMLELGSEAE--AEHVRL----- 377 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTNGE 479 E G + +G +A+ + G KG V G Sbjct: 378 -GE------RAAASGCAAVVYRGGFAKAVARGLAQA---------GFKG--RFQEVRAGA 419 Query: 480 KKMSVDCDIIREILGL 495 + + E LGL Sbjct: 420 ELPP-----VLEDLGL 430 >gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UTI89] gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli APEC O1] gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli S88] gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli UTI89] gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli APEC O1] gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli S88] gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IHE3034] gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UM146] gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 110-3] gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 16-3] gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H252] gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H263] gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] Length = 452 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae Sd197] gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197] gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] Length = 452 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 166/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQVGG------- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU144] Length = 451 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 160/469 (34%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N + + ++ IN VS DSR I G +F+ G DGH FI QA+ Sbjct: 1 MINVTLEQIKNWIDCEIDEKHFKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+ + + PI+ V++T L A ++AVTG++ Sbjct: 61 NDGAGAVFSEKENKHSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160 Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E G Q L + TN+G H+ +++ AK + L Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + V + + + H+ V + + + Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVKNEGIHFTI-----NQKEHY 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G + NA +A + +G++ ++ ++ + + R E +++ I Y Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ + + ++ GR I++ G Q +G+ D + T Sbjct: 336 NASPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + N+ + I+T I + +D ++V KG Sbjct: 392 -FGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPEDKVLV--KG 437 >gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis] gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 457 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 181/481 (37%), Gaps = 49/481 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 7 KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ + N +++VD+T L A + ++ VTG++GK++ Sbjct: 66 AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + +G + + P+ + + + + + + Sbjct: 120 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 166 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S+ G A TN+G H+ +++ A+ +L KE +IY Sbjct: 167 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D +++ A++ + G L+ V TI F P+ G Sbjct: 225 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIENTFF--IPILG 278 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + V NA+ A GI + L L V R E + T+S I Y + S Sbjct: 279 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 338 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422 ++ ++ ++ G+ ++V G GD ++ G + D + T Sbjct: 339 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 392 Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476 + I + + EK + ++A++ E +K D+++ A +G + IV Sbjct: 393 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 449 Query: 477 N 477 + Sbjct: 450 D 450 >gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] Length = 489 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 87/496 (17%), Positives = 160/496 (32%), Gaps = 47/496 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ L+ + P ++ VS DSR ++ G +FVAI G + DGH ++ Sbjct: 5 MTIGEVAEAVAGRLVEGANGVPEGA--VALHAVS-DSRQVENGSVFVAIQGERVDGHDYV 61 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 QGA A +V P +VVDNT L A + P Sbjct: 62 ASVADQGAVAAIVDHEVPGAA--------VPQIVVDNTVTALGDLAKANIARRRASGEPF 113 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 I+ +TG+ GK++ + + G + +G + LT Sbjct: 114 TIIGITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNN-EIGLPLTALTVGE--------- 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G H +G H+ + + A Sbjct: 164 ---HTRYFVAEMGANHVGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQA-KTEIV 219 Query: 236 ELLPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L A++ DD + + + G + G + Sbjct: 220 RGLLPNGIAMLNTDDEHVEAMSAVAPGEVLRFGIDESNAGRDALHACDIVTDSFDRASFT 279 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVG 350 ++ +G+ +PG V NAL AA + +G+ + E+ H+ P R Sbjct: 280 MVAGDGEQSQVALAIPGAHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVST 339 Query: 351 TNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIM 402 G R + +S+ L + + G + V G G ++ + Sbjct: 340 VERGGARFTLIDDSFNANPDSMHAGLDGLARWSEGAQYRVAVLGAMLELGGDEKQLHRSI 399 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 G A + +V +P + + + E+ G + A+ A D++ Sbjct: 400 GAYAAEHGIDEVVAVGSPTDQALDALAGELAQGAKNA----DGAMAVEWAHSAAQADDMI 455 Query: 463 VVAGKGHETVHIVTNG 478 V + HE ++ G Sbjct: 456 VRIAREHEGTVVLLKG 471 >gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] Length = 451 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 85/465 (18%), Positives = 157/465 (33%), Gaps = 44/465 (9%) Query: 6 LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + P ++ L + IN++++D+R I IF+A+ G K DGH FI AI Sbjct: 1 MILSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA ++V S+ ++V +T A+ K I+ +TG+ Sbjct: 61 AKGAIGVIVDHEVSVI-----SSKRITQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSV 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G + + T + + + Sbjct: 116 GKTTTKELIAAVLGVYGKVHKTQANYNNEIGVPK-----TLLSLTTNHDYAVIEMAMRAR 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + S + G TN+G HI +++A A +PK+S A Sbjct: 171 GEIALLSQI--------ARPTIGIITNVGTAHIGRLGSREAIAEA-KCELLAEMPKDSIA 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ DD E R + L + + DF Sbjct: 222 ILNHDDQRLMETAARIWQGKTITYGLEGGDITGELLDNQI----------LRVEGIDFPL 271 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG N L A + + +D +L + + GR + ++ + Y Sbjct: 272 PLPGRHNALNYLAALAVTKQLNLDWN-LLTQGVTVDLPKGRSQQYSLSNNIVLLDETYNA 330 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420 S++ L+ ++ R + V G G+ +G +A L D + D+P Sbjct: 331 GLESMKAALQLLKDTPGKRHLAVLGTMKELGEASAQLHQEVGAMAEKLGIDGLYILVDDP 390 Query: 421 RSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 I G+ + I +++ D ++ Sbjct: 391 E-------AQAITQGVKTIETECFPTHEHLIERLTQVIQPGDRIL 428 >gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] Length = 457 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 182/481 (37%), Gaps = 49/481 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 7 KNIAEMVEGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ + N +++VD+T L A + ++ VTG++GK++ Sbjct: 66 AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + +G + + P+ + + + + + + Sbjct: 120 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 166 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S+ G A TN+G H+ +++ A+ +L KE +IY Sbjct: 167 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D +++ A++ + G L+ V TI K F P+ G Sbjct: 225 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIEKTFF--IPILG 278 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + V NA+ A GI + L L V R E + T+S I Y + S Sbjct: 279 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 338 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422 ++ ++ ++ G+ ++V G GD ++ G + D + T Sbjct: 339 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 392 Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476 + I + + EK + ++A++ E +K D+++ A +G + IV Sbjct: 393 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 449 Query: 477 N 477 + Sbjct: 450 D 450 >gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. SMY] Length = 481 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 181/481 (37%), Gaps = 49/481 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 31 KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 89 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ + N +++VD+T L A + ++ VTG++GK++ Sbjct: 90 AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 143 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + +G + + P+ + + + + + + Sbjct: 144 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 190 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S+ G A TN+G H+ +++ A+ +L KE +IY Sbjct: 191 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 248 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D +++ A++ + G L+ V TI F P+ G Sbjct: 249 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIENTFF--IPILG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + V NA+ A GI + L L V R E + T+S I Y + S Sbjct: 303 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 362 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422 ++ ++ ++ G+ ++V G GD ++ G + D + T Sbjct: 363 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 416 Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476 + I + + EK + ++A++ E +K D+++ A +G + IV Sbjct: 417 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 473 Query: 477 N 477 + Sbjct: 474 D 474 >gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] Length = 458 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 164/471 (34%), Gaps = 40/471 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + N + + R ++ ++SDSR G +FV IVG + DGH FI Sbjct: 1 MK--NLTLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + GA A + F P + V ++ + + A + ++ + Sbjct: 59 PNVMEAGALATLSQKELPEARF--------PYIQVASSLQAVKDIAKFYLEQLKIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + G + P+ + Sbjct: 111 TGSVGKTSTKEVIASVLKEKYHILKTQGNFN----------NELGLPLTVF---RLRDYH 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + S G + RL I + TN+G+ H+++ + AK +F L Sbjct: 158 EIAVLEMGISDFG-EMSRLADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKE 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D +++ + + I + + Sbjct: 217 GGRAIL--NGDDDKLATIRQVQGKEPIFFGMNPAFPVYADQIQSRGLKGMSCRIHLPEAE 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F P+PG+ VYNAL AA + + G+ + +E L + GRF + + Sbjct: 275 FAVEIPMPGQHMVYNALAAAAVGMVHGLTPEQIRRGIESLEPISGRF-RMIETDHFLIVD 333 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415 Y S++ L ++ GR + + G G++++ +G A D+ I Sbjct: 334 DCYNANPVSMKASLDVLKD-ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLIC 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 T R P I + + + R L D ++V Sbjct: 393 TGSLSRYMS-----EAAKAANPNLEVIYEVDSKKLERNLFSYLRDGDTILV 438 >gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 57-2] Length = 452 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAESQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] Length = 452 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V+ + + P ++V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVNRPLDI---------DLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mollicutes bacterium D7] gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. D7] Length = 450 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 171/472 (36%), Gaps = 44/472 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ +++ +LI+ +I S DSR + G +++ I+G + DGH FI Sbjct: 1 MKVSEIVIATGGKLISGDETM-------EITGFSQDSRQAEVGMMYIPIIGERYDGHDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA AI+ +++VDNT K L A L ++ + Sbjct: 54 ESAFTNGASAIITDRLIE--------DDKHVVILVDNTLKALQKMAHYLRKHRKVKVVGI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S V + ++ + G P+ + + Sbjct: 106 TGSVGKTSTRDMVYSVVKQQYKTLKTEGN----------YNNNIGLPLTILRLKDEEVMI 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + R+ + TN+G HI +++ AK+ + + Sbjct: 156 LEM--GMNHLNEMEELSRIA--CPDISAITNVGTAHIGELGSRENILKAKLEIVAGMSDG 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I +D + + V +KV + + + TI+ GK + Sbjct: 212 STLVINGDND----MLSTVRFDNFKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKVY 267 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+PG V NALVA + I + I ++ + + + R + + + I Sbjct: 268 QVVVPVPGNHFVLNALVAIAIGINLEIPMEKCIQGISQFELTKKRMDVIELKNNITLIDG 327 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVT 416 Y + +S++ + + T S R I V G+ + +GK +A D+ + Sbjct: 328 TYNASEDSMKSSIDVLATY-SRRKIAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAV 386 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + G+ N E + L DV+++ KG Sbjct: 387 GREAKFMS----DSAALSGMAEIYYCNNNQEVVNYLKNNLQNDDVVLL--KG 432 >gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 471 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 93/474 (19%), Positives = 171/474 (36%), Gaps = 39/474 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D ++ L+ + + ++DSR ++ G +F+A+ G K DGH +I +A+ GA Sbjct: 3 DSAKIAVLLNGRLYGSEKAVFHRCTADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAA 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++ ++ + + I+ V+++ K L A+ + ++ VTG++GK++ Sbjct: 63 IVLAEEKRLRREGVPVLPEKSSIIAVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTT 122 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V + G +T L PS + + G E Sbjct: 123 KDMVAAVLGTKFRVHKNAGNLNT-EIGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEI 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S A TN+G H++ +++ A E LP+E AI+ + Sbjct: 182 S------------CPCAAVITNIGATHLELLGSRENIARA-KWEIVESLPEEGIAILNTE 228 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLP 307 D S E H G G+ + T + ++ PLP Sbjct: 229 DKISMEKAASYHGKTLFYGIEGKFGRPDLWAEEIIPSGDTGTTFRARYKKENVLIRLPLP 288 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ V +AL A G + G++ + LE L + R E + + I Y Sbjct: 289 GKHNVLDALAALGAGLLNGVNLESGSQALEGLQISAMRLEILPGCHQSIIINDVYNANPA 348 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S++ L ++ + + V G G Q +G A L + +VT Sbjct: 349 SVKASLAVLKERGGAKTVAVLGEMYELGAASQSGHREVGVEAAGLGVLELVT-------- 400 Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAI---RTAIEMLNKQDVLVVAGKG 468 K+ EI G + EA+ + I++L +++ KG Sbjct: 401 VGKLAEEIAAGALQNGFLPSRIHICEDCAEAVTATKKIIDLLGAGTWVLI--KG 452 >gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 468 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 159/453 (35%), Gaps = 32/453 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R ++AG +FVA+ G DG F +A+ +GA A++V +A ++ + Sbjct: 31 ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV ++T + A K ++A+TG++GK++ + G + Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFT 210 TP T VE G+ Q G T Sbjct: 151 EVGLPLTLLSITPE---------------DTAAVVEIGMRGMGQIAALAPIAEPSIGIVT 195 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H++ + + AK L +P I+ ADD + A + + Sbjct: 196 NVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAGMRSSAADGVRVMTYG 254 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + + + + ++ G+ ++ LPG V NAL A +G+ Sbjct: 255 ISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSNALAALAAGFVLGMTPQ 314 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E L L R+E + I Y + +S+ L+ + GR + V G Sbjct: 315 EMQEGLTHLTAEKMRYEVHQVGAW-TLINDAYNASPSSMRASLETTAALYPGRRVAVLGD 373 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGN 444 G + +G+ +L +VT E E G P + Sbjct: 374 MLELGTAAEAAHRDVGRRVAELGFAMVVTYGRQAQWTHETAEA------AGCPDCCHAAS 427 Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476 +A L D ++ G +G I+ Sbjct: 428 HADAAAYLRRHLMDGDTVLFKGSRGMRMEQIIA 460 >gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] Length = 449 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 87/473 (18%), Positives = 174/473 (36%), Gaps = 46/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+++++I +L++ E +N + D+R I++G +++ +VG DGH +I Sbjct: 1 MQIKEIIEATNGQLLSG-------DMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA +I+ + D + +++V +T + +S A L ++ + Sbjct: 54 AQAFNLGASSIITAHKVHYPDKN--------VILVKDTLQAMSDMAKYLRMHRQVKVVGI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + +G + I L + L ++ Sbjct: 106 TGSVGKTSTKDMIYSVVSTKYKTLKTLGNYNNH--------------IGLPLTILRLQNE 151 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + G +H + TN+G HI +++ AKM + L Sbjct: 152 EVMILEMGMNHLGEIEHLTQIALPDVAAITNIGTAHIGELGSREKILQAKMEIVNGLKSD 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I +D + H + + V I +G+ + Sbjct: 212 GTLVINDDNDMLHTVNAENYHMIRV----GQNEDCDLKAIDVELRLEDSYFDIDYQGQRY 267 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ GE VYNAL+A + +++ ID L + +E + R + + I Sbjct: 268 HVHVPVSGEHFVYNALIAIAIGLSLDIDMNLCIAGVEHFELTKNRMDMIELKDNIKVIDG 327 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVT 416 Y +S++ L + R I V G+ +Q +G + D + Sbjct: 328 TYNANLDSMKSSLAVLAQY-PKRKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCV 386 Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I + G+ + + EML +D +++ KG Sbjct: 387 -----GEASCYIVEKAQSLGLKNAYHFEDNQALMTYLDEMLEPEDTILI--KG 432 >gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] Length = 458 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 83/411 (20%), Positives = 151/411 (36%), Gaps = 26/411 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L + + + + + V++D+R + G +FVA+ G DGH F QA+ Sbjct: 1 MIATTLQTLADAIGATLIG-ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V+ +L + P L+V +TR L + + + P ++A+TG+SG Sbjct: 60 GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I G + G + P+ L + Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + + NL H++ + AK +F L P+ + + Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIV 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R G + V + T+ + L P Sbjct: 218 NVDSNDWESWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G V + L L VPGR + + + Y Sbjct: 278 LPGRHNIANALAAAALTMSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413 S+ + + + R++VV G + +G+ A D Sbjct: 338 VGSMSAAAEVLGNMPGYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKV 388 >gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] Length = 460 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 146/466 (31%), Gaps = 43/466 (9%) Query: 14 LINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L+ + PM + + +V +DSR I G +FVA+ G K DGH F+ QA+ GA A V Sbjct: 6 LLKRALQVPMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVAS 131 VS + + ++ +VV +T ASR K ++A+TG++GK+S Sbjct: 66 VS------EVPEGVAAD-RCVVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKD 118 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + + LT +A VE Sbjct: 119 CIAAVLGERYRVIKTQANFNN-EIGLPKTLLTIREDTEMA--------------VVEMGM 163 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 GL Q R + AK + D Sbjct: 164 RGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLENIAKAKSEILEDFTPKNHAFLNGDD 223 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGE 309 VM+ + ++ A + T PL G Sbjct: 224 PRVSVME---TGAAVHTYGIDSDADVKAVEISADGLRTVFTYRSRITGATQKVQLPLIGR 280 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V NAL A + G+ A + LE L + R E + I Y + S+ Sbjct: 281 HNVMNALAAVAVGEVYGVPDAAIARGLENLKMTGMRQEILHFGPV-TVINDAYNASPASM 339 Query: 370 EMILKN----IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 E L+ +++ GR I V G Q +G VT+ Sbjct: 340 EAALRTLGDVVKSQGKGRAIAVLADMLELGAHSQSGHAQVGTWCSQYG----VTELVCYG 395 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +R EA R ++ DV+++ KG Sbjct: 396 PESRFMAEAAQKAGVPVHYAQDRGEAARVLARLVRPDDVVLL--KG 439 >gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 452 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 166/466 (35%), Gaps = 46/466 (9%) Query: 6 LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + P ++ N L + INE+++D+R+I IF+A+ G+K DGHLF +AI Sbjct: 1 MILSEIPNILSNSLKEISQPLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++++ S+ P ++V +T A+ K I+ +TG+ Sbjct: 61 DKGAIALILNHKISVNST-----KKIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSV 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + + G + I +TT + + + Sbjct: 116 GKTTTKELISAVLGVYGKVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIAL 175 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + G+ TN+G HI +++A AK L E+ Sbjct: 176 LSQIACPTIGI--------------ITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIA 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + D + K G L+ K DF Sbjct: 222 ILNHDDQRLMETAAKVWQGKTITYGLEGGDITGKVLENQIL-----------RVKGMDFP 270 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PLPG N L A + + +D +++ + +++ GR + + + Y Sbjct: 271 LPLPGRHNALNYLAALAVTQQLNLDWHPLIQGV-TVNLPQGRSQQYSLENDIILLDETYN 329 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDN 419 S++ L+ ++ R + V G GD +G+ A L D + D+ Sbjct: 330 AGLESMKAALQLLKDTPGKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDD 389 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 P I G+ + + I+ E++ D ++ Sbjct: 390 PE-------AQAIAQGVKTVETECFPTHEQLIQRLTEIIKPGDRIL 428 >gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella boydii ATCC 9905] Length = 452 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G + +G+ A Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379 >gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.] Length = 493 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 101/477 (21%), Positives = 175/477 (36%), Gaps = 34/477 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK LI E+I + ++ VS DSR I G +FVAI GN DGH F Sbjct: 1 MK--QLIPWTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAF 58 Query: 60 IPQAIAQGAEAIVVSSAYSLQDF-SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 + QG + IV++ + + + + VDNT K L A+ + +++ Sbjct: 59 AEAVVEQGIKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVV 118 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+TG++GK+S I R + G + P+ L K S Sbjct: 119 AITGSNGKTSTKEMANAIVSRKFDTLSTTGNLN----------NEIGLPLTLLKLCSSQK 168 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + + G + K G TN+GR H++ +T + NAK L + + Sbjct: 169 ---WAVLELGMNHPGEIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGEL-LDGI 224 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AI+ ADD + ++ + I V N + + Sbjct: 225 KPDGTAILNADDERVMCLARKTTRNVIYFGL--SENALIKASSVEVNKNLTSFVLKLPDD 282 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PG F V NAL AA + + + + + LE V GR + I Sbjct: 283 SIRVELNAPGRFMVSNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMNITTLQNGVTII 342 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLA-DIA 413 Y +S+E +K++ + + G + +G++ + + Sbjct: 343 DDSYNANPDSMEAAIKSLAGLKGKNRGALVAGDMLELGIYSETLHKKIGELCAECGIERL 402 Query: 414 IVTDDNPRSEDPEKIRA-EIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 T + I A II G+ + G++ + + E L +D +++ KG Sbjct: 403 YAT-----GQFSSDIAAGAIIGGMDISSVFTGSQEDILSDMTEWLRPEDWILI--KG 452 >gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola] Length = 292 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 13/262 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L Y FP + N ++K + +S DSR + + +F+AI G K+DG+ FI Sbjct: 1 MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+ + AI+ + + +N PIL + +S A+R+Y + + I+ Sbjct: 53 FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V + Q + G +G + + TT S I + L Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + V++E SSHGL Q+R+ I G FTNL +DH+DYH+ + Y +AK F Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFS-- 230 Query: 238 LPKESPAIIYADDAYSKEVMKR 259 K I+ A+D Y+K+ +++ Sbjct: 231 QHKIKKIILNANDKYAKKWLRK 252 >gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] Length = 473 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 85/466 (18%), Positives = 177/466 (37%), Gaps = 41/466 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ ++ M + VS DSR + G IF I G+ DGH F QA +GA ++V Sbjct: 10 LVAAINGVVMGSMPETFSGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQAYERGAGVLIV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + P++VV + + L A + I+A+TG+ GK++ + Sbjct: 70 ----AEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +Q +G + + P+ LA+ + E + Sbjct: 126 KQALAMTGNVHANLASLNNCWGV----------PLTLARMPIE-----SDYGIFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + + T++ H+ + + + AK +FE L ++ AI+ AD Sbjct: 171 RDEIRPLVKLVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEG-LDEKGIAILNADSD 229 Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++++A G + + + + + + ++ + + + +D + PG Sbjct: 230 FFSYLVQKAKKCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD--YAHT 365 V N+L C A+G++ VL GR ++ G +D Y Sbjct: 290 HIVQNSLGVIAACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNAN 349 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418 S+ L+ GR I + G + ++ R ++ I L A+ + Sbjct: 350 PASMRAALELLATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFL--- 406 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + + +++ G+ N + + + ++ D+L+V Sbjct: 407 --FGEAMKSLVSDLSAGV-KVHYAENIEKILSLLLAEISSGDLLMV 449 >gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 301] gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301] gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2002017] gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2747-71] gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-671] gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2930-71] gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-304] Length = 452 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSMGKQSHAISTA 400 >gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] Length = 469 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 163/457 (35%), Gaps = 28/457 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++D+R I +G +FVA+ G K DG F +A+ +GA A++V + S A Sbjct: 25 NTVFPHITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALK 84 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ +L D+ + A K ++A+TG++GK++ + G Sbjct: 85 KAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRGKVCRT 144 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--L 204 A++ P+ L VE GL Q Sbjct: 145 ----------AENYNNEVGLPLTL-----LGIVPEDFAAVVEIGMRGLGQIAALAPVAAP 189 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+ H++ + + AK L E +P I+ ADD+ + A + Sbjct: 190 TIGIVTNVCEVHMELLGSIENIAKAKAELVEA-IPSGGTVILNADDSRVAAMRSFAADGV 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + + + + + ++ + ++ LPG V N L A A Sbjct: 249 RILTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVSNTLAALAAGFA 308 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ + L + R+E + I Y + +S+ L+ + GR Sbjct: 309 LGLTPQEMQAGLRNIEGTKMRYETESVGAW-MFINDAYNASPSSMHAALETTAALYPGRK 367 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFI 440 I V G G + ++G+ A +L A+VT I G Sbjct: 368 IAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVT----YGPQARWIHEAAEETGCAACF 423 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476 EA + ++L+ D ++ G +G ++ Sbjct: 424 HAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIA 460 >gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] Length = 458 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 166/481 (34%), Gaps = 52/481 (10%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + +W ++ VS+D+R IQAG ++V + G +GH F+ +A Sbjct: 1 MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A++ + + D+T L A+R + ++ VTG+ Sbjct: 61 VQKGAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGMKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + P+ L S + Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + + A TN+G H+ +++ AK+ + L Sbjct: 162 VVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + ++ V K G Q + V I+ F Sbjct: 222 VYHGDEPLLTERVPKLPLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL A + GID + L +L V R E V T I Y Sbjct: 280 MPVLGKHYVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD-LADIA----- 413 + S+ L ++ ++ R I V G GD + +G++ + D Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399 Query: 414 ----IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467 I P +D E + A+ A+ D++++ A + Sbjct: 400 LSHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446 Query: 468 G 468 G Sbjct: 447 G 447 >gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] Length = 463 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 125/390 (32%), Gaps = 31/390 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + E + S P + +I V DSR ++ G +F I G DGH F+ Sbjct: 1 MKLT---LCELEEQLMGSSDLP-SAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA A+VVS + + P ++V +T + L A+ K ++AV Sbjct: 57 QQAFDAGAVAVVVSQFMPEFE-------DKPTIMVKDTVQALGRVAAYWRMKSHARMIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + + SG + T + Sbjct: 110 TGSAGKTTVKEMLAHVLSGSGSVHKNFMNLNNQLGLPLSMLEATGE-------------E 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S + N+G H++ + + A + + Sbjct: 157 TYWVMELGISLPHDMGELGPIAQPDMAIVHNIGPAHLEGLGSLENV--ADQKSSLFKYIR 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + S ++ + I + Sbjct: 215 PEGVALCCKDHELLWEAANKISKPVPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGEETA 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + + P G NA +G++ + E L + + RF ++ G + Sbjct: 275 EVILPTCGSHFAENAAAVTCAAHQLGMELTEIAERLATVELPKQRF---HCHTHGKWTLI 331 Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVF 388 D Y S+ + + I R +V+ Sbjct: 332 DDSYNANPLSMNRAIDTAKRIADDRPLVLV 361 >gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] Length = 450 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 90/446 (20%), Positives = 163/446 (36%), Gaps = 32/446 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + V SDSR+I AG +FVA+ G DG+ F +A+ GA A++VS A + Sbjct: 17 GADVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDASVQAE--- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P +VV +TR L A K ++AVTG++GK++ + I S Sbjct: 74 ------PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAIL------S 121 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G +++ + + P+ L K + V + + G + + Sbjct: 122 VVAGAKASVHATYGNLNNDIGVPLTLLKM---QPAHQYAVVEMGMNHLGEIDYLTHIAQP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N G HI +++ AK +F L I D ++ N Sbjct: 179 DVALINNAGIAHIGELGSRENIAKAKGEIFAGLKSDGVAVINADSDYAYYW---KSLNPH 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++++ G + + V ++ + + GE + NAL A A Sbjct: 236 RKIVTFGLKNPADVSARYQENDGYASVVLATASDEVSVQLNVQGEHNISNALAAGATAYA 295 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ + L V GR E + I Y +S++ + + + +G+ Sbjct: 296 LGVSLNDIGRGLASFTGVYGRLERKAGINGAVVIDDTYNANPDSMKAAINVLAKL-AGKK 354 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 I+V G G+ + + ++ A A +T + G F Sbjct: 355 ILVLGDMGELGADAKSMHAEVGA-YAKAAGLTTLYCLGNLSVETARSFGAGAEHFSSP-- 411 Query: 445 RIEAIRTAI--EMLNKQDVLVVAGKG 468 EAI A+ + ++V KG Sbjct: 412 --EAIAQAVLPALAQ-GTTVLV--KG 432 >gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 462 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 78/466 (16%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL+++I EL+ + + + N VS+D+R I+ G IF+A+ G +G+ F+ Sbjct: 5 KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA +VS + I+ V+N K L A K ++A+T Sbjct: 58 MAIEKGAALCIVSEINFSEGKVGKASY---IIKVENANKALLDLAKYYRSKLDIKVVAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + G + S Sbjct: 115 GSTGKTSTKDLVGAVLAEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + + + + K TN+G HI+ +++ AK+ + + + Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +I D + ++ + + A + + + Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F +PG+ V N+L A + I+ + ++ L R + V Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S++ + ++ I R I + G G + + A + + Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLF-SI 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 SE + EI + N EA + ++ D++++ Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441 >gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] Length = 473 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 91/475 (19%), Positives = 176/475 (37%), Gaps = 36/475 (7%) Query: 6 LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I+K + + ++ Q I V +DSR IQ G +FV IVG K DGH F+ Sbjct: 1 MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +A GA A + + ++ P++ V++T K L A+ + ++ +TG+ Sbjct: 61 LAGGAGAAFWQRDH------QPVPADLPLIFVEDTLKALQSLAAAYLSESRAKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++V V + + + G +N + P + L+ + Sbjct: 115 NGKTTVKDMVSALLETTYNVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S + + + TN+G H+ +++ AK+ + + P Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLL 221 Query: 244 AIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + G R + G Q H + + S Sbjct: 222 IYHGDEPLIRQVLAEEATVKPEGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGEG 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F PL G V NAL A + +GI + L + R E V T + Sbjct: 282 FSLPLLGRHNVVNALAAMAVATHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDA 341 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416 Y + +++ + + + R I V G G R++ +G+ D AD+ Sbjct: 342 YNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVF-- 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P S + P + ++ + I +E + ++D+++V A +G Sbjct: 400 TYGPLS---LHTANKAKARFPEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRG 451 >gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 452 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 148/394 (37%), Gaps = 32/394 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I QL+ + + I +V++D+R AG +F+A+ G + D H F+ AI G ++VS Sbjct: 9 IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + P+ L + + A+ G Sbjct: 120 AILRECGETLYTAGNLN----------NDIGVPLTLL---RLKPQHRYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ NL H++ + AK +F LP AII + Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINGESNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S G + V T+ D D PLPG + N Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ L +++G + V L L VPGR + ++ + Y S+ + Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R+++V G MG A + Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370 >gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella longbeachae NSW150] gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Legionella longbeachae D-4968] gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella longbeachae NSW150] Length = 441 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 91/445 (20%), Positives = 163/445 (36%), Gaps = 39/445 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + DSR +++G +F+AI G + DGH FI +A A+GA A VVS Sbjct: 18 TELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVEGVH------ 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P VV + + L+ A+ ++A+TG++GK++ + S Sbjct: 72 --IPQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAA--ILPSPSHSTK 127 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + +P+ + + S + A+ G H + + Sbjct: 128 GNLNNH----------IGAPLSVFQLNSQHR---YAVFELGANHPGEIAHTVAIVHPDVT 174 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + AK + + L AI+ DDAY+ + + Sbjct: 175 LINNIAPAHVEGFGSIDGVARAKGEIHQG-LSSAGTAIVNDDDAYAHFWDELLLDKKVLR 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + ++ V D +PG V NAL AA C AIG+ Sbjct: 234 FSIEHPADVYAQDVQLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGL 293 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + + L V GR + ++ I Y S+ + L+ + G+ I V Sbjct: 294 SAKEIQQGLNLFSGVKGRLTVLTGKNQSTVIDDTYNANLRSVLVALEVLAEH-PGKKIFV 352 Query: 388 FGCGGDRDQ---GKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 FG G+ +G A L D + R A G+ G Sbjct: 353 FGDMGELGVWATQHHQEVGIAARRLGIDQLLCCGSKSR-------LAAEAFGVGG-EYFT 404 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ + ++ + L+ V++V KG Sbjct: 405 SQEQLVQNLVAKLSADTVVLV--KG 427 >gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 24/384 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS Sbjct: 19 GESIDIEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P L+V +TR L + + + ++A+TG+SGK+SV I ++ G Sbjct: 70 HLPIDVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + + + A+ G + D ++ Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + NL H++ + AK +F L + + + + H Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIVNADSNDFPHWQVTLNHKTV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R V + + T+ + L PLPG+ + NAL AA L ++ Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V L +L VPGR + + + Y S+ + + + R+ Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406 +VV G GD +G+ A Sbjct: 357 MVVGDMGELGDDAPECHRQVGEAA 380 >gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] Length = 453 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 80/466 (17%), Positives = 172/466 (36%), Gaps = 38/466 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + E++ ++ +I VS+D+R I+ G +F+A+ G +G+ ++ +A Sbjct: 1 MLELNLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA+ +V ++ ++ + ++ V NTR+ L A K ++ +TG++ Sbjct: 61 NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S V + G +N + P I Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162 Query: 185 VSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E GL Q + G TN+G HI+ +T++ AKM + + Sbjct: 163 AILEMGMRGLGQIKELAEIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD + + V + + I K + + T+ K+ +F Sbjct: 223 LVVCGNDD----FLGALPNAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PGE + N ++ + +G+ + L+ + R E + + Y Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +++ + ++ I R I V G G + + +GK + + ++ Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLC--- 394 Query: 420 PRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 I G G N+ E I+ + ++ D+++V Sbjct: 395 -----FGDFSKNIKEGYGEGCTVYENKEELIKDLLNIICDGDIILV 435 >gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrosococcus oceani ATCC 19707] gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] Length = 454 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 148/408 (36%), Gaps = 35/408 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L L Q + VS+D+R + G +FVA+ G + DGH FI Sbjct: 7 MSLRELTSAVQGRL---------QGANVAASGVSTDTRSLVPGSLFVALRGERFDGHAFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA +GA A ++ A + P + V + R L A+ + I+AV Sbjct: 58 AQAREKGASAALLEQAINDP---------LPQIEVADARIALGQLAACWRQRFVRPIVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + + G + P+ L + + Sbjct: 109 TGSNGKTTVKEMIASVLGWREPVLATRGNLN----------NDIGVPLTLLELDTSHR-- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G ++ + TN G H+D + AK +F+ + Sbjct: 157 -FAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GS 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E AI+ ADD A + + V + + T+ Sbjct: 215 EGVAILNADDPCFSYWRDLAGELPVIGFGLSKSAEVTARHVVASTGSSC-FTLITPAGKA 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG V NAL A+ IA+G+D + L L VPGR + + Sbjct: 274 KIQLPLPGRHNVLNALAASAATIALGVDRQHLSASLAALSSVPGRLQIRRGIGGMRLLDD 333 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 Y S + L+ + R +V+ F G+ IMGK A Sbjct: 334 TYNANPASFQAALELLAKFPGERALVLGDFAELGEEAASLHRIMGKQA 381 >gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] Length = 453 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 173/474 (36%), Gaps = 42/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L EL+ ++ + + N V D+R I+ I+ AI G + +G+ F+ Sbjct: 1 MELS------LNELLEAMNGELIVKGKTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A ++GA +V + + ++ ++ V++T K L A+ K ++ V Sbjct: 55 IEAFSKGASIAIVDEILFDLNNTDNLQ---TVIKVEDTEKALLNLANYYRKKLGLKVIGV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + G + L S I +A Sbjct: 112 TGSCGKTSTKDLIAAFLSEKYKVFKTKGNFNNQ-IGLPLMILELDSSIDVA--------- 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S+ G + + TN+G HI+ +TQ+ AK +F Sbjct: 162 ---VLEMGMSNLGEIDVLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDET 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D + ++K + ++ + +K T+ + ++ Sbjct: 219 NTLIINGED----ENLLKIKDKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEES 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ + N+++A + + + + + ++ L R + + N Sbjct: 275 IFTIPMAGKHNILNSMLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQVIKRNKITIINDC 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +S++ + + + +GR I + G G+ +G AL D+ I Sbjct: 335 -YNASPDSMKSSMDVLSSYKTGRKIAILGTMNELGEEAVKSHIEVGNYALTKVDLLIAVG 393 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + G I + E I ++ + DV++V A +G Sbjct: 394 EYKDY---------FKKGFTGENIITFATKEECIDKLDTIIKENDVVLVKASRG 438 >gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coprococcus catus GD/7] Length = 456 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 165/470 (35%), Gaps = 42/470 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+++ ++ + V DSR I+ G+IFVA G + DGH FI Sbjct: 4 MTLENIAAACGGQIYYMREDLAQETA----KGVVIDSRQIEPGYIFVATKGERVDGHRFI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+GA A++ P ++V+++ L A+ + ++ + Sbjct: 60 PDVFAKGALAVICEVLPEEDLG--------PCILVEDSFMALKQAAAFYRQQLNIRVVGI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S F+ + G P+ + Sbjct: 112 TGSVGKTSTKEFIAAVLVEKYKVHKTAGN----------YNNEVGLPLTIFGIQDD---D 158 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + ++ G + HRL + + TN+G+ H++ + AK +F+ + P Sbjct: 159 QIAVLEMGINTFG-EMHRLSEVARPDICVMTNIGQCHLENLIDRDGILRAKSEIFDFMNP 217 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + + D + + + + I + Sbjct: 218 EGTVIV--NGDDDKLATIHDVYGKAPITFGMNKDNAIWADHIENRGLLGSRADIHMGDVL 275 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PLPGE +YNA+ AA + + + + + + V GR G ++ Sbjct: 276 VHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEITAGISHVEAVAGR---SHLIEAGDKVV 332 Query: 360 VDYAHTSNSL-EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 +D + +N + ++ GR + + G G+ ++ +G+ A + I+ Sbjct: 333 IDDCYNANPVSMKAAIDLLATAPGRKVAILGDMFELGENERAMHREVGQYAAEKGIDLIL 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464 SE E G E EA+ ++ +L D ++V Sbjct: 393 CVGGLSSEMYEGAAE--KGGEARHFEI---REALEAVLQDLLQPGDTVLV 437 >gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 459 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 88/468 (18%), Positives = 164/468 (35%), Gaps = 35/468 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ + + ++ +D+R I G +F+A G + +G F+ A+ +GA Sbjct: 5 TLDEVREATGAQLYKMEHEEFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVEKGAS 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++VS++ + T +L+ ++T A + ++A+TG++GK++ Sbjct: 65 GVMVSTSCPKAQLAGL---KTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G P+ L T VE Sbjct: 122 KDLTAAVLSARGPVLKTQAN----------YNNEIGLPLTLLGLRKE-----HTAAVVEI 166 Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 GL Q G TN+G H++ + + A E +P ++ Sbjct: 167 GMRGLHQIEAMAPIAAPTVGIVTNVGETHMELLGSIENIAKA-KSEMVEAIPAGGTVVLN 225 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKDFDFLF 304 AD+ Y + +A + + + K+ ++ + I +G++ F F Sbjct: 226 ADNPYVAAMRSQAREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTF 285 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G VYNAL A A+G+ A L L RFE + I Y Sbjct: 286 AMVGRHNVYNALAAIAAGFALGLTPAEAASGLRNLKATKMRFEVQDVKTY-HVINDAYNA 344 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ ++ + +T GR I V G G + +G + A+VT R Sbjct: 345 SPMSMKAAIETLSELTKGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVT----R 400 Query: 422 SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I G+P + A ++L D ++ KG Sbjct: 401 GQMGAFIADGAEEGGVPQVFRADSHEAAADYLHKILEPGDTILF--KG 446 >gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] Length = 451 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N + ++ + IN VS DSR I G +F+ G DGH FI QA+ Sbjct: 1 MINVTLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+ + PI+ V++T L A ++AVTG++ Sbjct: 61 NDGAGAVFSEKENRYSEEIQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L Sbjct: 172 QIELLSNIA---------QPDIAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + H+ V + + + Sbjct: 223 YDGDEPLLKPHVTQVKDAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHYHL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G++ ++ ++ + + R E +++ I Y Sbjct: 278 PILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + ++ GR I++ G Q +G+ D + T Sbjct: 338 SPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYT----F 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + + + I+T I + +D ++V KG Sbjct: 393 GKEASYIHDSGKIFVKEAKHFDQKEQLIQTLISQVKPEDKVLV--KG 437 >gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895] Length = 452 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + +Q + I+ V++D+R + G +FVA+ G + D H F A GA A++VS Sbjct: 9 LAGILHGELQGADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + P L+V +TR A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP AI+ AD+ Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPVNGIAIMNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S + + + T+ D D L PLPG + N Sbjct: 226 NWQGIIGDRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +A+G + L L VPGR + N + Y S+ ++ Sbjct: 286 ALAAAALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDNQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R++VV G + +G+ A Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379 >gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] Length = 457 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 166/470 (35%), Gaps = 54/470 (11%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 K + + + I+ + + I+ +++DSR+I G IF+A+ GN DGH F Sbjct: 9 KFRKIFSANLNSEIDVID-------DFLIDGITTDSRYINPGEIFLALRGNTFDGHDFAN 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+ +GA A++V S P + V +T A + ++A+T Sbjct: 62 IAVDKGAIALIVDH-----HISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAIT 116 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + G+ +N + P + ++ Sbjct: 117 GSVGKTTTKELISAVLSNYGIVHKTKEN--------YNNEIGVPKTL-------LELTRQ 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + +E GL++ L TN+G HI +++A AK L E+ P Sbjct: 162 HDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSKEAIAQAKCELLAEMPP 221 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + + + K G L + Sbjct: 222 DATAIFNHDNSLLVQTAKKVWKGETISYGLEGGDITGELLDNQTLRVEGMDFPL------ 275 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PLPG N L A + + +D +++ +++ GR + + Sbjct: 276 -----PLPGRHNALNYLGAIAVAKCLKLDCNVLM-QGISVNLPKGRSRRYQLSGDILLLD 329 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415 Y S++ L+ ++ I R + + G G++ +G+ A L D +V Sbjct: 330 ETYNAGLESMKAALELLKEIPGQRHLAILGTMKELGEKSAELHREVGETAKALGIDHLLV 389 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 D DPE I I G G + + + E I+ E++ D L+ Sbjct: 390 LVD-----DPEAIA--IADGALGMVTECLPTQEELIKRLTEIVQPGDRLL 432 >gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Erwinia sp. Ejp617] Length = 452 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 147/394 (37%), Gaps = 32/394 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I QL+ + + I +V++D+R AG +F+A+ G + D H F+ AI G ++VS Sbjct: 9 IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + P+ L + + A+ G Sbjct: 120 AILRECGETLYTAGNLN----------NDIGVPLTLL---RLKPQHRYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ NL H++ + AK +F LP AII + Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINGESHDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S G + V + D D PLPG + N Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ L +++G + V L L VPGR + ++ + Y S+ + Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R+++V G MG A + Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370 >gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 452 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 150/394 (38%), Gaps = 32/394 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + +R I +V++D+R G +F+A+ G + D H F+ AI G A++VS Sbjct: 9 VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ P +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + P + + A+ G Sbjct: 120 AILRECGETLYTTGNFNNDIGVPLTLLRLKPE-------------HRYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ + NL H++ + AK +F LP AII +D Sbjct: 167 IAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S + V T+ D D + PLPG + N Sbjct: 226 HWQQALHAKTIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ L +++G + V + L L VPGR + ++ + Y S+ + Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R+++V G MG A + Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370 >gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] Length = 475 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 175/463 (37%), Gaps = 26/463 (5%) Query: 13 ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +Q + I VS+D+R + AG +++ + G DGH F+ A+ +GA + Sbjct: 13 ELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVKKGAGGV 72 Query: 72 VVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V ++ + + +++ + ++VD+T K L A ++A+TG+SGK++ Sbjct: 73 LVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGSSGKTTTK 132 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I +++ G + P+ L + + V + + Sbjct: 133 EMTAAILEQTFSVLKTEGNLN----------NLIGLPLTLLRMHR---GHDLALVELGTN 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + G + + + G TN+G H++ +T + K L+ + D Sbjct: 180 ARGEIKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVF--NAD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + ++R+ + + + Q T++ + G Sbjct: 238 DEAMAPLRRSWQGKMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMH 297 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YNAL AA L A GI + + L H V RFE + + Y S+ Sbjct: 298 NIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAFLVDDTYNANPASVR 357 Query: 371 MILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP 425 LK I+T+ + R +VV GD+ + +G + A D + RS Sbjct: 358 EALKTIQTLKGNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTAA 417 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+ + + + E + + + D ++V KG Sbjct: 418 GAIKGGMTE--ERILFFEDPEEILDDVLSFVEAGDWILV--KG 456 >gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] Length = 452 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 100/473 (21%), Positives = 172/473 (36%), Gaps = 43/473 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + + ++ V++D+R + AG +FVA+ G + D H F+ QA Sbjct: 1 MIRVTLSQLADVLQG-ELHGSDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P +VV +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRKLAC---------SLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + T + Sbjct: 111 KTSVKEMTAAILGQCGKTLYTAGNLNNDIGVPMTLLRLTRE-------------HEFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP++ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPQDGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S G + T+ D L P Sbjct: 217 LNADNNDWLNWQSVIGDRQVWRFSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G V L KL VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALAMAVGAGLDAVKAGLAKLQAVPGRLFPISLAQHKLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI-------- 414 S+ + + + R++VV GD + +G+ A D Sbjct: 337 VGSMTAAAQVLSDMPGYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQL 396 Query: 415 VTDDNPRSE---DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459 + + E D + A + I + KG+R A+ + L + Sbjct: 397 IGAASGVGEHFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQEN 449 >gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] Length = 454 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 175/473 (36%), Gaps = 39/473 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + ++ + E +I+ V++D+R + G +F+ ++G +GH F +A Sbjct: 1 MIKRTVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A++ + P+++VD+T L A + ++ +TG+ Sbjct: 61 VELGAAAVLWNQK------ETNPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + Q + G + P+ + S + Sbjct: 115 NGKTTTKDMIHSVLQTTYQVHKTDGNFNNH----------IGLPLTIL---SMPKGTEIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + + + A TN+G H+ +++A +AK + + L + Sbjct: 162 VLEMGMSAKGEIEFLSNLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + +++ + + + +K + VEG FL Sbjct: 222 YYL-----GDEPLIRERATQLSQQVKTFGEADDCDIKVTHINQLAEGTEFQVEGYAQGFL 276 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NAL A + G++ + + L + + R E T I Y Sbjct: 277 IPVLGKHNVKNALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYN 336 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGK-IALDLADIAIVTDD 418 + S++ + + + I+V G G ++ +G+ I + D + Sbjct: 337 ASPTSMKAAIDLVGDMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---- 392 Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 I G ++ E + ++ DV++V A +G Sbjct: 393 -TYGRLGAFIAEGAKKSFGDTRVFSFMDKEELKKKLADVAGPDDVVLVKASRG 444 >gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes LO28] Length = 178 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 21/195 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L + + +F + E +I+ ++ DSR ++ G +F+ I G DGH F Sbjct: 1 MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 +A+ GA AI+ + + P++ V ++++ +++ A YG + + Sbjct: 53 ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GK++V+ V+QI + +G + IG I + + TTP + L + Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163 Query: 177 LSSQGVTHVSVEASS 191 + GV+ +E SS Sbjct: 164 MLLSGVSTAVMEVSS 178 >gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 452 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 168/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR V + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTTIKAGLATLKAVPGRLFPVQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G R +AI A Sbjct: 378 -----AAKAAGIDRVLSTGKRSQAISHA 400 >gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 484 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 85/501 (16%), Positives = 161/501 (32%), Gaps = 41/501 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ + ++ + +N +I + +N VS DSR++ G +F AI G+ DG FI Sbjct: 1 MKMDAISLEEVIQAVNGKAISNVSG--LMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA +VVS Q P+++VD+ + L A K I+ + Sbjct: 59 EQAFDAGAIGVVVSK----QGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + LT K Sbjct: 115 TGSNGKTTTKEMLYHLLSHFAPVVKPQKSFNNF----IGVPLTIFEIESKHKYGILEMGT 170 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + S GL N+ + H++ + + + L + Sbjct: 171 NAPGEILRLSEIGL---------PDIAVILNISKTHLEGLGSIEGVALE-KGDILKNLKE 220 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---- 296 + AD+ E+ + K + + I Sbjct: 221 NGVFVYNADNPLCCEIADKFGGNKISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRL 280 Query: 297 -------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + F+ +PG + N L + +C A+G+D + + + R + Sbjct: 281 CGVKGGGRRQFEIQLQVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQ 340 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKI 405 + I Y S+ LK I +GR I + G G +G+ Sbjct: 341 QIGNV-TFINDAYNANPESVFAALKYFEEIDAAGRKIFICGDMLELGKESHALHKELGEK 399 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 A L + T S D + + + + + + + DV+++ Sbjct: 400 ASTLNLDLLWTVGKYAS-DIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIK 458 Query: 466 G-KG-HETVHIVTNGEKKMSV 484 G +G H I + ++ Sbjct: 459 GSRGMHMETII--DKYREYFS 477 >gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] Length = 453 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 150/405 (37%), Gaps = 25/405 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + I++VS+D+R + AG +FVA+ G K D H + A+ Sbjct: 1 MISVSLRQLADVLGARLVG-ENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVN 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P LVVD+TR L + A + + ++A+TG+SG Sbjct: 60 NGAAALLVSK---------HLPIDVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++ G + G + TP + Sbjct: 111 KTSVKEMAASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPE-------------HDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + ++ A NL H++ + + AK +F L + I Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++ R G+ G + + + D P Sbjct: 218 NADSNDEARWQDVLTGKTLWRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL A L + +G V LE+L VPGR + + Y Sbjct: 278 LPGHHNIANALAATALALTVGASLEAVKVGLEQLQAVPGRLFPIALAPGKLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G Q +G+ A Sbjct: 338 VGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARK 382 >gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] Length = 452 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 148/468 (31%), Gaps = 35/468 (7%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ + KI V+ DSR +Q +F+ G DGH F+ Q+I Sbjct: 1 MIEVTLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + P++ V +T L A ++AVTG++ Sbjct: 61 QDGAAAAFYQTGQEIDSSLEEQ----PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSN 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + + G +N + P I Sbjct: 117 GKTTTKDMIESVLKTQFKVKKTQGN--------YNNEIGMPLTI-------LELDYDTDI 161 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E G + L AK + K++ Sbjct: 162 SILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGI 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 IY D +++ + + + N+ + Sbjct: 222 FIYDGDE---PLLQPHVAQVKHAKLISVGLEQHNTYVCTIDSNQNDGIAFNINNTEHYEL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ ++ +++ + + R E T + I Y Sbjct: 279 PILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420 + S++ + + + GR I++ GD Q +G+ D Sbjct: 339 SPTSMKASIDTLSNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELY-----T 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E+ + I + ++ I + L D ++V KG Sbjct: 393 FGEEAQYIHRSGQPYVSHAQHFESKEAIIEQLKKELVAGDKVLV--KG 438 >gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] Length = 457 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 140/387 (36%), Gaps = 29/387 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +EVS+DSR I +F+A+ G + D H F P + GA A++V + + Sbjct: 31 SEVSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVERELDV---------DC 81 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P ++V NTR + A+ + + ++ +TG+SGK+SV I + G + + G Sbjct: 82 PQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGNL 141 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + A+ + + +K + Sbjct: 142 N----------NDIGVPLTLFRLTHE---YDYAVIEMGANHPNEIAYTTNIVKPESALVN 188 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL H+ + + AK +++ L + + + D+YS + Sbjct: 189 NLFAAHLAGFGSPEGVARAKGEIYQGLPDEGTAIV--NLDSYSPHWQFQPRQTVWYYSLK 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + T+ PLPG + N L A+ L I++G Sbjct: 247 PQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIANVLAASALAISVGATLE 306 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--F 388 + L VPGR V + + Y S+ + + + RI++ Sbjct: 307 DIRNGLATTKAVPGRLYPVQLSPTKVVLDDTYNANDGSMIAAINVLAKMPGYRILIAGDM 366 Query: 389 GCGGDRDQGKRPIMGKIALDLA--DIA 413 G GD Q +G IA A D Sbjct: 367 GELGDYAQDCHQRVG-IAAKDAGLDKV 392 >gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] Length = 458 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 83/451 (18%), Positives = 158/451 (35%), Gaps = 32/451 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VESGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + P+ + + + V Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ +++A AK+ + L Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N ++ G + + + ++ F Sbjct: 222 VY--NGDEPLLTNRVPEMNLMAETVTFGDARANDYYPTTVTLQATGTHFKMNKDENISFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYN L + + G+ + + L L + R E V T+S I Y Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIEAI 449 +I P K + EA+ Sbjct: 397 -YGRLGAQIAEGAKINFPSERVKAYDNKEAL 426 >gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus epidermidis FRI909] Length = 451 Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 77/467 (16%), Positives = 155/467 (33%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ N + + + IN VS DSR I G +F+ G DGH FI QA+ Sbjct: 1 MINVTLEQIKNWIDCEIDEKHLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+ + PI+ V++T L A ++AVTG++ Sbjct: 61 NDGAGAVFSEKENRYSEEIQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L Sbjct: 172 QIELLSNIA---------QPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + H+ V + + + Sbjct: 223 YDGDEPLLKPHVTQVKDAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHYHL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G++ ++ ++ + + R E +++ I Y Sbjct: 278 PILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + ++ GR I++ G Q +G+ D + T Sbjct: 338 SPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYT----F 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + + + I+T I + +D ++V KG Sbjct: 393 GKEASYIHDSGKIFVKEAKHFDQKEQLIQTLISQVKPEDKVLV--KG 437 >gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 459 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 170/479 (35%), Gaps = 53/479 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ + +P QW E + V DSR + G +FV I G + DGH FI Sbjct: 3 MQLSEIARAL------GVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A + + D T ++ P + V++ L A K ++A+ Sbjct: 56 EQAIQAGAVATLWAK-----DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ +++ + + + PI + + + Sbjct: 111 TGSNGKTTTKD----------MTAAVLATEFNVVKTEANFNNEIGVPITILGMNA---NT 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G + ++ T +G HI++ +T+ +AKM + + L Sbjct: 158 EVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKED 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + +RA G + + A + + + + Sbjct: 218 GCFIY----DGDEPLLAERAKAVDVEQRMFGMKNENDVFASDVAGTDTETSFKTNLDPEV 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ GE+ V NAL A + + A L ++ R E++ + Sbjct: 274 EVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLKGRQGERILSD 333 Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +L + T +GR VV G + + + ++A L N Sbjct: 334 VYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLADSL---------N 384 Query: 420 PR-SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRT------------AIEMLNKQDVLVV 464 P E+ + + G E+ EA+ +M+ D +++ Sbjct: 385 PAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLL 443 >gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] Length = 452 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 153/403 (37%), Gaps = 26/403 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ ++ + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELKGADIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL A L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAGAALAMSVGATRDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S+ ++ + + R++VV G + +G+ A Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379 >gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] Length = 457 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 94/460 (20%), Positives = 163/460 (35%), Gaps = 47/460 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ + + VS+D+R I G +FVA+VG DGH ++ QA ++GA A VVS + S+ +A Sbjct: 20 QDVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSVSRKAA- 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 VVD+TR L+ A + + AVTG+SGK++V + I ++ Sbjct: 79 -------WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQNAEVLA 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + P+ L S + + AS+ G + D Sbjct: 132 TKGNLN----------NDIGVPLTLF---SLKDQHEIAVIEQGASARGEIAYTTDISCPD 178 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AG 264 N H++ + Q +K +F L AII DD ++ + Sbjct: 179 VAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHTEGLPR 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G + + N + + D + G+ V NAL AA Sbjct: 239 LTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALAAASAVS 298 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ + L V GR + + I Y S+ + + ++ G Sbjct: 299 AQGMSLKDIASGLGSFSAVSGRMRPLKSARGALVIDDSYNANPGSVNAAMDLLVSL-PGE 357 Query: 384 IIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPR------------------ 421 ++V G G + +G + A D R Sbjct: 358 SVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYDAAAGKQGQHFK 417 Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 E+ A+I + KG+R A+ ++ L + + Sbjct: 418 SHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTEGE 457 >gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Erwinia amylovora ATCC 49946] gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia amylovora ATCC 49946] gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 452 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 150/394 (38%), Gaps = 32/394 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + +R I +V++D+R G +F+A+ G + D H F+ AI G A++VS Sbjct: 9 VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ P +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + P + + A+ G Sbjct: 120 AILRECGETLYTTGNFNNDIGVPLTLLRLKPE-------------HRYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ + NL H++ + AK +F LP AII +D Sbjct: 167 IAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S + V T+ D D + PLPG + N Sbjct: 226 HWQQALHAKTVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ L +++G + V + L L VPGR + ++ + Y S+ + Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + R+++V G MG A + Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370 >gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 451 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 79/467 (16%), Positives = 162/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ +S + E +I V+ DSRH++ +FV G DGH F+ QA+ Sbjct: 1 MIEVSLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + D PI+ VD+T L A ++ VTG++ Sbjct: 61 KSGAGASFYEKGQDISDSIQG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L ++ Sbjct: 116 GKTTTKDMIESVLHTEFRVKKTQGN--------YNNEIGLPLTI-----LQLDKDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K V + ++K + + Sbjct: 223 Y-----DGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYEL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+D + +++ + + R E T+++ I Y Sbjct: 278 PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + +GR I+V G+ Q +G + ++T N Sbjct: 338 SPTSMKAAIDTL-SHMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D + I + ++ E +L D +++ KG Sbjct: 395 --DAKFISRTGGQFVEDVAYFSDKNELTHYLKSILQPDDKVLI--KG 437 >gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes FSL F2-208] Length = 115 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444 GCGGDRD+GKRP M KIA+D A I T DNPRSE+P I ++I G+P ++ N Sbjct: 1 VGCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHEN 60 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 R +AIR A+ DV+++AGKGHE ++ + E D R + L Sbjct: 61 RRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVIDFDDRVEARIAIEKKL 112 >gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. NRRL B-14911] Length = 457 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 76/476 (15%), Positives = 150/476 (31%), Gaps = 46/476 (9%) Query: 6 LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + + + + I VS +SR ++ G +FV G DGH F+ A Sbjct: 1 MIQRTIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A + + PILVV++T K + + + + +TG+ Sbjct: 61 LRKGAAAALWQQDVPNP------PLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++V ++ G + V Sbjct: 115 NGKTTVKDMTARLLSLRYKVQKTEGNYNNHLGLPLTLLSLEED-------------TEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + + TN+G H+ ++ AK+ + E L Sbjct: 162 VLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLGSRAGIAKAKLEIIEGLKDDGMI 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + + A R G + V ++ D ++ Sbjct: 222 IYHGDEPLLKDRLNGYSGPAKVRSFGKGQSN---SIYPVRIDQEEKGSVFQANLSDMEYH 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G V NAL A +GI + E L + R E I Y Sbjct: 279 LPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFASLKLTAMRMELSEGCKGEKVINDAYN 338 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S+ + + ++ ++V GD + +G+ ++T Sbjct: 339 ASPTSMRAAIDLVSELSGYSIKVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLT--- 395 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKG 468 + I G + R+ A I + N + +++ KG Sbjct: 396 -----FGSLGRVIAEGAQEVFSEE-RVFAFSEKGPLIEKLQSLTNAETIVLF--KG 443 >gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 458 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 98/490 (20%), Positives = 189/490 (38%), Gaps = 44/490 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ + + + +R+ EVS+D+R ++ +FVA+ G K DGH F+P Sbjct: 1 MRKILASTIARVTGGVLL----GEDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPD 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A+GA +VV +S+ N +VV +T + L A K ++ +TG Sbjct: 57 AVAKGAAGVVVERPFSI---------NVTQIVVKDTFRALQELALYNRQKEGLKVIGITG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ V+ + ++ + P+ L + V Sbjct: 108 SNGKTTTKDLVKAVLRQKYNVCATEKNFN----------NELGVPLTLLNF---DENTEV 154 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + G + G TN+G H++ ++Q+ AK L + LP + Sbjct: 155 GIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQENIARAKSELIKN-LPGDG 213 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AII + + + N + G++ +++KK + + I+ + +F Sbjct: 214 VAIINGESP---YIKEIVANIPVKKYFFGHRAGDLYIKKFSQEDDGLRF-ITAGILEEEF 269 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G NAL A + +G+ L+ + L ++ + R E S Y Sbjct: 270 FLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEVELTGMRLEIQFIGSMKIIKDY-Y 328 Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + S+E LK + GR I V G GD + +G++A L ++T Sbjct: 329 NASPTSMEAALKVLAGTGQKGRKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLITV- 387 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHI 474 +I + G + EA + L +D +++ A +G + + Sbjct: 388 ---GPKAREIGNGALAGGMSPQNIFHFATKEEAGSFLLNFLKPEDTVLLKASRGMKFEEL 444 Query: 475 VTNGEKKMSV 484 E+ Sbjct: 445 FATIERGWFS 454 >gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70] Length = 460 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 139/382 (36%), Gaps = 19/382 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ +L L + + +S+D+R A +F A+ G D H ++ +A+A Sbjct: 1 MLKLTTKQLATILQAELVGEANVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV A + + P L+V +TR L A + + LA+TG+SG Sbjct: 61 QGANALVVERA--------DTQISVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + + ++ P+ L + Sbjct: 113 KTTVKEMTASILQSAVGVEQVLFTQGNFNNDI-------GVPLTLL---RLTEQHQFAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + ++ N+ H++ + + AK ++ L + AI Sbjct: 163 ELGANHQGEIAYTTGLVQPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRG-LQPDGVAI 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I + Y + + + + V + P Sbjct: 222 INKEHDYRSTWAQDIGAHRVQYFAYQDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLP 281 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A+ L + +G A + + LE V GR V + Y Sbjct: 282 YLGEHNVKNALAASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDNLLLLDDTYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVV 387 +SL+ ++ ++ + RI+VV Sbjct: 342 VDSLQSAIRVLQKYDAFRILVV 363 >gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] Length = 454 Score = 136 bits (343), Expect = 7e-30, Method: Composition-based stats. Identities = 88/468 (18%), Positives = 157/468 (33%), Gaps = 44/468 (9%) Query: 3 LQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L + K ++ + + E+ + +++DSR I G IFVA+ G DG+ F Sbjct: 2 LSQISLKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTE 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+ +GA AI+V N P +V +T A + ++AVT Sbjct: 62 IAVEKGAIAIIVDREV-----PVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVT 116 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + + G +N + P + L S Sbjct: 117 GSVGKTTTKELIAAVLSQRGKVHKTRAN--------YNNEIGVPKTL-----LELDKSHD 163 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + G + + G TN+G HI + +A A E + + Sbjct: 164 YAVIEMAMRAKGEIALLTEIARPTLGIITNVGTAHIGRLGSTEAIA-AAKCELLEQMSPD 222 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + AI+ D+ E + + L T+ VEG +F Sbjct: 223 TIAILNHDNPLLIETAHKVWQGETLTYGLEGGDLVGQLIDAQ--------TLRVEGINFP 274 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P Y A +A + + L +++ GR + + Sbjct: 275 LPIPGRHNALNYLAALAVAKVLNLDWTP---LTEGLTVNLPSGRSRRHQLPNDVLLLDET 331 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417 Y S+ L+ ++ R I V G GD +G+ L D +V Sbjct: 332 YNAGLESMIAALELLKQTPGQRHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLT 391 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEA-IRTAIEMLNKQDVLV 463 D+P+ EI G G +A ++ EM+ D ++ Sbjct: 392 DDPQ-------AQEIAVGADGVTTQCWQTHQALVQQLQEMIKPGDRIL 432 >gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 176/479 (36%), Gaps = 34/479 (7%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ ++ + VS D+R ++ G ++V I G + DGH F+ +A Sbjct: 1 MIKRTLKQIEKMVNGTGLAEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A + +N P++ V++T + L + A + ++ VTG+ Sbjct: 61 IESGAVATLWKRDVQNP------PANMPVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + G + + Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEED-------------TEIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + A TN+G H+ ++ A AK+ L + Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKL-EIVTGLQEGGV 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ + + A + + + V T++ + ++ F Sbjct: 221 FVYNGDEPLLTNRVPKMDLAVETITFGDARANDYYPTSVTLQATGTHFTMNRD-ENVLFY 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL + + G+ + + L L + R E V TNS I Y Sbjct: 280 LPVLGKHNVYNALASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEVVKTNSGLTIINDAYN 339 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++E + + + IVV G GD++ +GK+ + T Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT--- 396 Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 +I P N+ E ++ ++++ +DV++V A +G + I+ Sbjct: 397 -YGRLGAQIAEGAKINFPNERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKMEEII 454 >gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 81/466 (17%), Positives = 154/466 (33%), Gaps = 32/466 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L L+ + + ++ +S D+R IQ G +FV G +GH F+ QA +G Sbjct: 2 KKTLKQLAAWLNEDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + P+L VD+ L A +H + +TG++GK+ Sbjct: 62 AGASLWQKD------EPNPPEGYPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + IG + PI + + V + + Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTDVAVLEM 162 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G + + TN+G H+ ++ AK + + + Sbjct: 163 GMSGFGEIEFLSKLARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDG 222 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + + V K H G + + + + + DF + Sbjct: 223 DEPLLQELVAKEQHLQSVP---FGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISVL 279 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G QV N LVA + +G+ + + LE + + R + + + I Y Sbjct: 280 GRHQVKNTLVAMLISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAPT 339 Query: 368 SLEM--ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPRS 422 S++ TI + +V+ G ++ + + + D V PR Sbjct: 340 SVKAAIQFMATSTIRPEKWLVLGDMLELGPNERIFHEGLAEHINE--DEIDYVCLFGPRM 397 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 KI + + + AI +E N+ ++++ KG Sbjct: 398 LYLYKILEKRFE-AERLLYTEDDYTAIIEKLEQANESSIVLL--KG 440 >gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Edwardsiella tarda FL6-60] Length = 458 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 150/411 (36%), Gaps = 26/411 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L + + + + + V++D+R + G +FVA+ G+ DGH F QA Sbjct: 1 MIATTLQTLADAIGATLIG-ADSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQARE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V+ +L + P L+V +TR L + + + P ++A+TG+SG Sbjct: 60 GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I G + G + P+ L + Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + + NL H++ + AK +F L P+ + + Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVAQAKGEIFAGLPPQGTAIV 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R G + V + T+ D L P Sbjct: 218 NADSNDWENWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G V + L L VPGR + + Y Sbjct: 278 LPGRHNIANALAAAALTMSVGATLTQVQQGLAGLQAVPGRLFPIRLGEHQLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413 S+ + + + R++VV G + +G+ A D Sbjct: 338 VGSMSAAAEVLGHMPGYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKV 388 >gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] Length = 451 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 81/467 (17%), Positives = 163/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ +S + E +I V+ DSRH++ +FV G DGH F+ QA+ Sbjct: 1 MIEVSLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + D PI+ VD+T L A ++ VTG++ Sbjct: 61 KDGAGASFYEKGQDISDSIQG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L ++ Sbjct: 116 GKTTTKDMIESVLHTEFRVKKTQGN--------YNNEIGLPLTI-----LQLDKDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K V + ++K + + Sbjct: 223 Y-----DGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYEL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+D + +++ + + R E T+++ I Y Sbjct: 278 PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + +GR I+V G+ Q +G D ++T N Sbjct: 338 SPTSMKAAIDTL-SHMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D + I H + ++ E +L D +++ KG Sbjct: 395 --DAKFISRTGGHFVEDVAYFSDKNELTHYLKSILQPDDKVLI--KG 437 >gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 76/429 (17%), Positives = 151/429 (35%), Gaps = 31/429 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + ++ + ++ VS+D+R I +G +F+A++G D H FI QA+ Sbjct: 1 MISLTLAEIARAVGG-ELKGEDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVI 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++VS + TP ++V++TR L S ++ +A+TG+ G Sbjct: 60 KGAAALIVSQKLQIT---------TPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + I + G F G + P + Sbjct: 111 KTTVKEMLTSILSQKGQVLFTQGNFNNDIGVPLTLLRAKPE-------------DDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + N+ H++ + A L + A+ Sbjct: 158 ELGANHIGEIDYTTRLVNPDVALVNNVAAAHLEGFGSIDGVMQA-KGEIYNGLKSGAVAV 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304 I D + + + +S+ + + ++ + Sbjct: 217 INLDSNGGQYWQDVLADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G+ V NAL A L + G V L +L V R E + N + I Y Sbjct: 277 SLVGQHNVANALSATSLALEFGASLEDVKSGLNQLTKVSARAEVIELNKQIRLIDDSYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + +++ + + R +++ G+ +G+ A ++T Sbjct: 337 SVPAMKAAIDLLSNYRGKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLT----YG 392 Query: 423 EDPEKIRAE 431 D + I E Sbjct: 393 ADAKVISEE 401 >gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 457 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 87/484 (17%), Positives = 180/484 (37%), Gaps = 46/484 (9%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + + + + Q+ + I+ V++D+R ++ +F+ + G +GH F+PQA Sbjct: 1 MIKRTVKNIAKMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G A++ N +++VD+T L A + ++ VTG+ Sbjct: 61 FEAGVAAVLWDR------SEPNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + +G + + P+ + + + Sbjct: 115 NGKTTTKDMI----------HAVLGTRYRVHKTGGNFNNHIGLPLTVL---AMPEDTEIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G A TN+G H+ +++ A+ +L KE Sbjct: 162 VLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDG 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D ++++ ++ + G Q L+ V TI K F Sbjct: 220 VLIYIGDE---PLLQKTYSCQTKTYGAGAQN-DYQLQDVSQSEEGTHFTIKGMEKTFF-- 273 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYN 333 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ ++ G+ ++V G GD ++ G + + T Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFT--- 390 Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473 + I + + EK + ++A++ E +K D+++ A +G + Sbjct: 391 -YGKLGAFIAEGALKHFEKERVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEE 446 Query: 474 IVTN 477 IV + Sbjct: 447 IVKD 450 >gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 457 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 30/455 (6%) Query: 19 SIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + P + + + I V++DSR + G IFVA G + DGH F +A+ +GA +V++ Sbjct: 12 GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPV 71 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ ++ + + + G+ ++ VTG+ GK++ Sbjct: 72 EGVPAERA-------VISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAI 124 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + G + + L + + + V SH + Sbjct: 125 AGFGNTIKTEGNQNNE--------------LGLPRTMFRIGRDTEYAVVEMGMSHAGEIE 170 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL + Q L + SP ++ DD + ++ Sbjct: 171 RLAKCARPDVGIITCIGVSHIGNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAA 230 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 H L ++ P G V NAL Sbjct: 231 LPTHVRPVWFSLGDENADVCALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALA 290 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +G+ V+ L R + V S Y +S++ L + Sbjct: 291 AYAAATRLGLAPEGVIAGLADFEQTGMRQKIVHAGSMDVIEDC-YNANPDSMKAALAMFK 349 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R + G G +G+ A + A+VT E RA Sbjct: 350 EYPCKRRFALLGDMLELGGMSAPAHEELGRQAAEAGLTALVTY---GPEAARTARAAKDA 406 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 G+ + + +A + + D L+V A +G Sbjct: 407 GLADVVHAEDYRQAADALLARMAPGDALLVKASRG 441 >gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia stali symbiont] Length = 453 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 77/396 (19%), Positives = 149/396 (37%), Gaps = 24/396 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +++ ++S + + I +V++D+R + G +FVA+VG + D + F AIA GA+A++ Sbjct: 7 QILAEISGGQLHGSDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ ++ + P +VV +TR + + + ++ +TG+SGK+SV Sbjct: 67 VNRRLAV---------DVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I ++ G + + G + TP + + A+ Sbjct: 118 TAAILRQCGETLYTAGNLNNDYGVPMTLLRLTP-------------QHAYAVIEMGANHQ 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + ++ NL H++ + AK +F L + I + Sbjct: 165 GEIAYTTNLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGLPVHGTAIINADSNDL 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + A R + + T+ D PLPG + Sbjct: 225 PNWQSQFADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHNI 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL AA L +++ + L+ L VPGR + + Y S+ Sbjct: 285 ANALAAAALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLAGNQLLLDDSYNANVGSMTAA 344 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + + R++VV G GD + +G+ A Sbjct: 345 AQVLGDMPGFRVMVVGDMGELGDEAEACHRQVGEAA 380 >gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ED1a] gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ED1a] Length = 452 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] Length = 460 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 176/471 (37%), Gaps = 34/471 (7%) Query: 6 LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + +L + S+F I VS D+R IQ G +++ I G + +GH F+ +A Sbjct: 1 MIKRTLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A + + ++ +++VD+T L A + ++ +TG+ Sbjct: 61 IENGAVATLWNKDEENP------PTDISVILVDDTLVALQQLAKSYRHELDIKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V+ + + G +N + P I L + + Sbjct: 115 NGKTTAKDMVKAVLDTTYRVLKTDGN--------FNNHIGMPLTI-----LRLDETHDIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + + TN+G H+ ++ AK+ + L P Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQL 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + R N ++ G + + + F Sbjct: 222 VYNG----DEPLLTSRVVNPVFETMTFGSSEQNDLYPSAISAEELGTTFTVSRETTYSFF 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V+NAL A + G+D+ + + L++L + R E V I Y Sbjct: 278 IPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYN 337 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA-IVTDD 418 + S++ + + + + I+V G GD+++ +G+ A+ V Sbjct: 338 ASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQ--AEKIDYVLTY 395 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P S + E+ + + E ++ + ++DV++V A +G Sbjct: 396 GPLSVEIEQGAKNNFAE-DKVMHFEEKDELVKKLTAITTREDVVLVKASRG 445 >gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] Length = 452 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 152/400 (38%), Gaps = 29/400 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K E+ + + +N+V++D+R + AG +FVA+VG + D H F +AI GA Sbjct: 7 KTLAEITGGT----LHGSDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A++VS + + P +VV++TR ++ + + ++A+TG+SGK+S Sbjct: 63 QALLVSK---------HLPVSVPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTS 113 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V I + G + + G + T + + Sbjct: 114 VKEMTAAILRECGETLYTAGNLNNDYGVPMTLLRLTAE-------------HQYAVIELG 160 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A+ G + D +K + NL H++ + A + LP AI+ Sbjct: 161 ANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKA-KGEIFQGLPANGIAILNE 219 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + S + + + + + + + PLPG Sbjct: 220 ESNDWPNWQTTLQDKTVWRFSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPG 279 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + NAL AA L +++ + V + L+ L VPGR V ++ + Y S Sbjct: 280 RHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGS 339 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + ++ + + R++V GD + +G A Sbjct: 340 MTAAVQVLSEMPGYRVLVAGDMAELGDETEKCHREIGDAA 379 >gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. natto BEST195] Length = 481 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 88/482 (18%), Positives = 182/482 (37%), Gaps = 42/482 (8%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 LI + + + + Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA Sbjct: 25 LIKRTVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQA 84 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G A++ + N +++VD+T L A + ++ VTG+ Sbjct: 85 FEAGVAAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGS 138 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + +G + + P+ + + + + Sbjct: 139 NGKTTTKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIA 185 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G A TN+G H+ +++ A+ +L KE Sbjct: 186 VLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDG 243 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D +++ A++ + G L+ V TI F Sbjct: 244 VLIYIGDE---PLLQNAYSCQTKTYGTGAHN-DYQLQDVSQSEEGTHFTIKGIENTFF-- 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTD 417 + S++ ++ ++ G+ ++V G GD ++ G + D + T Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFTY 415 Query: 418 DNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 + E + + + EK + ++A++ E +K D+++ A +G + IV Sbjct: 416 GKLGAFIAEGALKQFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIV 472 Query: 476 TN 477 + Sbjct: 473 KD 474 >gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lautropia mirabilis ATCC 51599] gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lautropia mirabilis ATCC 51599] Length = 679 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 24/212 (11%) Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-------------- 350 + G F + NAL AAG ++G + ++E L +LH VPGR E VG Sbjct: 455 NVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVPGRMEIVGLPAAQVSDAGEAAP 514 Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMG 403 +++ + VDYAHT ++L +L +R I G++ VFG GG+RD+GKRP M Sbjct: 515 AAAISSTACPLVVVDYAHTPDALTNVLAALRDIAGQRGGQLCCVFGAGGNRDRGKRPEMA 574 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDV 461 + +AD +VT DNPR EDP +I A++ G+ P + + +R AI AI DV Sbjct: 575 RAVEAVADRVVVTSDNPRDEDPAQIIADVCQGLSKPAWRTEADRRVAIDAAIAQAAPADV 634 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKG ET + G D + + L Sbjct: 635 VLIAGKGRETTQEIA-GVFHPFSDPEFAAQAL 665 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 143/480 (29%), Gaps = 103/480 (21%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFI----------------------PQAIAQGAE- 69 + SDSR + G F A+ G ++DG FI A Sbjct: 31 LVSDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQAEDAAEGDVVQ 90 Query: 70 ---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 A + Y + P+ V L A Y + +++AVTGT+ Sbjct: 91 AEHAACGNFDYFKNLPTLPAGIQVPVCYVPCLGSQLGALADEYYDHPSQVLDVVAVTGTN 150 Query: 125 GKSSVASFVQQICQRSGLSS---------------------------------------- 144 GK+S ++ Q + Sbjct: 151 GKTSTTHWIAQGVNDRLARTGDAQAVDANTPSRPAASASTQRPAEFAGLVIALDGDADAA 210 Query: 145 --------FQIGPTSTISSFAQDN-RLTTPSPIYLA---KALSYLSSQGVTHVSVEASSH 192 IG + A + LTTP P+ L + + V V++EASS Sbjct: 211 MQPGRGRGVVIGTNGVGTPGALEYIGLTTPDPLTLQTLFQRFRADTEAPVGVVAMEASSI 270 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ G + FTNL RDH+DYH + QAY AK+ LF + A++ D Sbjct: 271 GLVQGRMQGTCIHTAVFTNLTRDHLDYHGSMQAYGAAKVGLFSWPTLQA--AVVNLGDPL 328 Query: 253 SKEVMKRAHNAGCRVLSVGYQ--------------------GKFIHLKKVCAIHNKQQVT 292 + E+++ H +GY + + Sbjct: 329 ATEIIEVLHRHTAAPRIIGYWVNNAHGAPQAGQADAAFQAMDDDARARLRRFYELAMRCD 388 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +E + + +G D +H R + + N Sbjct: 389 EVLELALDRDSSQHVLMMFPGSVVKTLLQLPEVGADPVASSGGAGSVHGRQQRLQAMFRN 448 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLAD 411 R+ V + R++ +V G G+ I+G A ++D Sbjct: 449 VATLRLNVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVPGRMEIVGLPAAQVSD 508 >gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 461 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 132/368 (35%), Gaps = 27/368 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 I VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ + Sbjct: 33 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRSIDGVH----- 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P VV + L+ A+ + I+A+TG++GK++V + S Sbjct: 88 ---IPQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 142 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +N + P L+ + A+ G H + ++ Sbjct: 143 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 189 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + A+ + + I DD Sbjct: 190 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 247 Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + I+ + + H + T+ + + +PG V NAL AA C A+ Sbjct: 248 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAV 307 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI + L V GR + ++ I Y S+ L+ + GR I Sbjct: 308 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 366 Query: 386 VVFGCGGD 393 VFG G+ Sbjct: 367 FVFGDMGE 374 >gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] Length = 458 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 168/456 (36%), Gaps = 29/456 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L E ++ V SDSR +Q G +F A+ G + DGH FI + ++G A+V Sbjct: 10 AASMLGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVA 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++VVDNTR+ L A+R I+AV G++GK+S + Sbjct: 70 ERTRMTGKMPECG-----VIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELL 124 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + ++ + S + +N + P+ + L + + + + G Sbjct: 125 AGVLKKR--------LNTLWSEASFNNDIGVPATL-----LRLEKANQAAVLEIGTNHPG 171 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + I+ G T++GR+H+++ + + L ELLP + + D ++ Sbjct: 172 ELAPLVSMIQPKFGIITSIGREHLEFFGDVAGVADEEGWL-AELLPADGKLFLNGDSDWT 230 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 K++ +R RV + K+ QV + + L G Q Sbjct: 231 KQIARRTRATVVRVGFGAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQAL 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NA A + +G+ + + L R + N G + D Y ++S+ Sbjct: 291 NATFALAVGAELGLTRDHLEQGLSDCKSAKMRLQLS--NWNGICVIDDAYNANADSMLAA 348 Query: 373 LKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L ++ + GR + V G G + +G+ +L + + Sbjct: 349 LNTLQEMPCVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSA 408 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 R G+ E + A L DV+++ Sbjct: 409 RD---AGLAEASEFDDVPAAAAAVKNFLKAGDVVLL 441 >gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya zeae Ech1591] gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae Ech1591] Length = 453 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 151/405 (37%), Gaps = 25/405 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + ++ I++VS+D+R + AG +FVA+ G K D H + A+ Sbjct: 1 MIRVSLRQLADVLGARLVG-KDLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVN 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS ++ P LVVD+TR L + A + + ++A+TG+SG Sbjct: 60 YGAAALLVSKHLPIE---------VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++ G + G + TP + Sbjct: 111 KTSVKEMTASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPE-------------HDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + ++ A NL H++ + + AK +F L + I Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++ A R G + + + D P Sbjct: 218 NADSNDEARWQDVLAGKTLWRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL A L +A+G V LE+L V GR + + Y Sbjct: 278 LPGRHNIANALAATALALAVGASLEAVKVGLEQLQAVSGRLFPIALAPGKLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G Q +G+ A Sbjct: 338 VGSMTAAVHVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAACK 382 >gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] Length = 458 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 87/476 (18%), Positives = 162/476 (34%), Gaps = 44/476 (9%) Query: 6 LIYKDFPELINQLSIFP---MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I + E+ + + +Q E ++ V DSR I+ G ++V + G DGH ++ Sbjct: 1 MIKRTIREMTGMIHVEDGEQLQHNETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVED 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A +GA A + +N P+L+V++T K L + ++ +TG Sbjct: 61 AFRRGAAASLWQKDVPNP------PANVPLLIVEDTEKSLQELSKSYRNALRAKVVGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ V + G + P+ L S + Sbjct: 115 SNGKTTTKDMVASVLSEKFKVQKTEGNFNNHQGV----------PLTLL---SLDEDTEI 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + S+ G + TN+G HI +++A +AK+ + E L Sbjct: 162 AVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSREAIADAKLEITEGLPENGL 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFD 301 + + +R N +G L V T D D Sbjct: 222 LIYMG----DEPLLQERVPNITGIRTKTFGKGHGNDLYPVEWKQETSGSTFRTNASGDID 277 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F P+ GE+ V N+L A G+ + L K + R E + I Sbjct: 278 FYLPVLGEYNVINSLAAILAGREFGMPFEEIRAGLGKTRLSAMRMEMADGINGSKIINDA 337 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + S+ ++ + +GR I+V G G+++ +G+ + T Sbjct: 338 YNASPTSMRAAIRLVEQFEGTGRKILVLGDMLELGEKEAAFHREVGRDLNPEKIDFVFT- 396 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K+ I ++ I + D+++V A +G Sbjct: 397 -------YGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKIGAGDLVLVKASRG 445 >gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 460 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 145/410 (35%), Gaps = 30/410 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ +P W + + V DSR + G +FV I+G + DGH FI Sbjct: 3 MQLSEIARAL------GTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ GA A + +D ++ P ++V N + L A K ++A+ Sbjct: 56 SQAVTAGAVATLW-----AEDHQERRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + PI + S + Sbjct: 111 TGSNGKTTTKDMTAAVLEAEYNVVKTKANFN----------NELGVPITILGMSS---NT 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G + ++ T +G HI++ +T++ +AKM + + L Sbjct: 158 EVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRERIADAKMEITDGLKED 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +RA + G + + + + ++ Sbjct: 218 GCFVFNG----DEPLLEQRAKDLNVEQYRFGLKADNDVSASDIQGTDTSTMFKTNLDEET 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ V NAL A + ID E L + R E++ + Sbjct: 274 TVTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKNRTEWLTGKKGERILSD 333 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409 Y + +L + + + GR +VV G + + + +A L Sbjct: 334 VYNSNPTAARAVLDSFANVNTEGRRLVVLGDMLELGENADQMHASLAEKL 383 >gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 459 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 170/479 (35%), Gaps = 53/479 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ + +P QW E + V DSR + G +FV I G + DGH FI Sbjct: 3 MQLSEIARAL------GVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A + + D T ++ P + V++ L A K ++A+ Sbjct: 56 EQAIQAGAVATLWAK-----DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ +++ + + + PI + + + Sbjct: 111 TGSNGKTTTKD----------MTAAVLATEFNVVKTEANFNNEIGVPITILGMNA---NT 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G + ++ T +G HI++ +T+ +AKM + + L Sbjct: 158 EVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKED 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + +RA + G + + A + + + Sbjct: 218 GCFIY----DGDEPLLAERAKAVDVEQRTFGMKNENDVFASDVAGTDTETSFKINLDPEV 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ GE+ V NAL A + + A L ++ R E++ + Sbjct: 274 EVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLKGRQGERILSD 333 Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +L + T +GR VV G + + + ++A L N Sbjct: 334 VYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLADSL---------N 384 Query: 420 PR-SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRT------------AIEMLNKQDVLVV 464 P E+ + + G E+ EA+ +M+ D +++ Sbjct: 385 PAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLL 443 >gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] Length = 452 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 95/439 (21%), Positives = 159/439 (36%), Gaps = 48/439 (10%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ ++ + ++ V++D+R + G +FVA+ G + D H F A GA A++VS Sbjct: 9 LAEILRGELKGGDLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A + ++ P LVV +TR A+ + + P I+A+TG+SGK+SV Sbjct: 69 RA---------LDTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I R G + + G + + + A+ G Sbjct: 120 AILSRCGKTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK +F L AI+ AD+ Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LSANGIAIMNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + ++ D L PLPG + N Sbjct: 226 NWQNIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +A+G V L+ L VPGR + + Y S+ ++ Sbjct: 286 ALAAAALSMAVGATPEAVKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + R++VV GD M ++ A A V E A Sbjct: 346 VLSEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE------AAKT 381 Query: 434 HGIPGFIEKGNRIEAIRTA 452 GI + G +AI A Sbjct: 382 AGIDRVLSTGKLSQAISHA 400 >gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] Length = 461 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 76/468 (16%), Positives = 155/468 (33%), Gaps = 29/468 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + E ++ + Q E ++ V +DSR I G +F+ +VG + DGH +I A+ Sbjct: 4 ITVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALE 63 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA + + R + + V NT + L A+ + + +TG+ G Sbjct: 64 AGAAGCLTAR------VRTDYREDKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVG 117 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + G + P+ L + V + Sbjct: 118 KTTAKDMIAAVLSVKYKVLKTEGNFN----------NNIGLPLTLL---RLDHTHQVGVL 164 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + G + D ++ G TN+G HI+ +++ F AK L + + + Sbjct: 165 EMGMDKPGEIDYLSDIVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVV 224 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ADD + + + + + I+ + D P Sbjct: 225 LNADDPMLTTLRGKTPVQAVFCGKAEDADYRAQVTGGDGVSHIH-CHITTPKMERDVKIP 283 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE +Y L+AA + G+ + + + + R + + Y Sbjct: 284 ALGEHMIYPTLIAAAVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDDSYNAN 343 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S+ + + S + + G G +G +V S Sbjct: 344 PQSMRAAISVLADTHSSWKVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVGKL-S 402 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKG 468 E + E G+P + EA + + +++ ++V A +G Sbjct: 403 EHMAQGARE--AGVPMVYSCAD-KEAAKVVLPQVVRPDSTILVKASRG 447 >gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 459 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 180/466 (38%), Gaps = 40/466 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++++ LI + + N VS D+R ++ G I++AI G DG+ F+ + Sbjct: 6 LEEVLKATEGNLI-------INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVE 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI +GAE ++ + A + + + I++V+NT+K L A K ++ VTG Sbjct: 59 AINKGAELCIIDKIAYTE---AEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + G +N + P + ++ V Sbjct: 116 STGKTSTKDLIAAALSEKLKVFKTKGN--------FNNEIGLP-----LMIFNLDNTYDV 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S Q D + G TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSDLFEIQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENL 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + D + +A + + + + + + + ++ + F Sbjct: 223 LIVNH--DDQYLSTIDKAEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLN----ESKF 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ + NAL+A +G++ L+ + + R + Y Sbjct: 277 YIPMPGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNKGITIINDT-Y 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418 + +S++ ++ ++ + R I V G G+ MG A + + DI I Sbjct: 336 NASPDSMKAAIEVMKNLKGKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIG- 394 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + K +E + IE + AI + ++D+++V Sbjct: 395 -----EFAKAYSEGFNNKNSSIELAEKEGAIAYLTSEIREEDIILV 435 >gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] Length = 472 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 101/472 (21%), Positives = 169/472 (35%), Gaps = 33/472 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 + D+I EL+ +S DSR + G +FVAI G + DGH FI + Sbjct: 1 MSDVIAATGGELVQGKG-------NEMFENISIDSRTLGKGDLFVAIQGQQHDGHDFIDR 53 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 +AQGA +++ A++ + + +VV +T L A + A+TG Sbjct: 54 VLAQGAGGVMIDQAHASRINTPRATGRGARVVVKDTVVALGDLARHRRRSVNPRVAAITG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 T+GK+S + G + T ++ P+ L V Sbjct: 114 TNGKTSTKEMAAMV---CGRRYRVLATTGNFNNEI-------GLPLTLL---RLEKGHQV 160 Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + ++ G + RL I G N+G H++ + AK L E L + Sbjct: 161 AILEMGMNAPG-EIGRLAKICEPDMGVVLNVGAGHLEGVENIDGVARAKAEL-LEALTDK 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI+ ADD ++ ++ + + +S + Sbjct: 219 DTAIVNADDMRVMKMAQKVRGRVVTYGMRQKADITAASVRRQDGRVCFDLCLSATDEQVA 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P G F V NAL AA + +G+ + + LE VPGR T + + Sbjct: 279 VALPASGTFMVSNALAAAAIGAGLGLSAPEIKAGLENFSPVPGRMTITQTRAGFTLVDDT 338 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVT 416 Y S++ L +R + +GR I++ G GD G A D VT Sbjct: 339 YNANPESMKAALAGLRELKGAGRGILIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVT 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + A + P I ++ I +L D ++V KG Sbjct: 399 GEFAEAVAGGAAAAGMT---PEKIMIESKETIIEAVCPVLEPGDWVLV--KG 445 >gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] Length = 468 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 172/484 (35%), Gaps = 60/484 (12%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E+I + + ++ VS+DSR + AG +FVA+ G++ DGH FI A+A+G Sbjct: 4 IDEIIQATGGTLIGSGGKMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAKGVRT 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V++ A N + V T + L A+ K ++ +TG++GK++ Sbjct: 64 FLVAADSLAARAPA---ENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTTK 120 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + I ++G G + + T + + S Sbjct: 121 EMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTG-------------RDRWAVLEMGMS 167 Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + RL I + G TN H+ + +A AK LF+ L A+ AD Sbjct: 168 EPG-EIDRLAEIAEPGVGIITNAFTAHLASMGSVEAVAKAKGELFQR-LKTGGVAVYNAD 225 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + A + G + +K + + T+ + + G+ Sbjct: 226 DPLISRLPTAAGVSRLSFGLRGAEVSSEGIKTLGLEG--VRFTLRLPDGEIPVKMRAFGQ 283 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 +YNAL AA AIG+D + LE+ RF I Y S+ Sbjct: 284 HNIYNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKRFHVEQVGDI-VLIDDSYNANPASI 342 Query: 370 EMILKNIRTI-TSGRIIVVFGCG---------GDRDQG--------KRPIMGKIALD--- 408 L ++ I R I V G R+ G + +MG+ A Sbjct: 343 AAALVTLKDIRQQNRAIAVLGDMLELGSGAPAAHREVGLLAATCVERLYVMGEYAETVAA 402 Query: 409 -------LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIE 454 AD V E E +R ++ G + KG+R EAIR Sbjct: 403 GAVDGGMGADHIYVA--GSHGEIVEDLRRKVTKG-DNILVKGSRGMHMDKVAEAIRNGFS 459 Query: 455 MLNK 458 + ++ Sbjct: 460 LADE 463 >gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] Length = 457 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 86/480 (17%), Positives = 167/480 (34%), Gaps = 50/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK E+ + +Q +++ V +D+R ++ G +F A+ G D + F Sbjct: 1 MK-----TMSLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + Q A+ A A+VVS + + S T +L V ++ K L A ++ Sbjct: 56 VEQGKAKQAAAVVVSR------VLSAVNSGTAVLQVQDSLKALQALARYNRQLFNIPVIG 109 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG++GK+S + + +G + + P+ L S Sbjct: 110 VTGSNGKTSTKDMI----------ASVLGVRYKTLKTSGNYNNEIGLPLTLLSMDSS--- 156 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + G + L + G+ + + A + + Sbjct: 157 HQTAVVEMAMRGRG-EIDFLCQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIG 215 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A++ + + ++++ AG + I + N + T+ Sbjct: 216 PQGFALLSGNSSLTRQLA--GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQ 273 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D P+PG + N+L A G+ + +G+ + L ++ + R E + N Sbjct: 274 EDIFLPIPGRHNIINSLAAVGVGLELGLSLPEIKAGLAEVVLTGMRMEIIKINGITVIND 333 Query: 360 VDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 V Y +S + L + + + R I V G G R +G+ A +V Sbjct: 334 V-YNANPDSSKAALTTLADLGHNRRKIAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLV 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468 T ++ +I G +R A E+ K+DV++V KG Sbjct: 393 T--------VGELARQIAVGAKNAGMPADRIFVYEDKQRACDCLGELCKKEDVILV--KG 442 >gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] Length = 442 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 140/367 (38%), Gaps = 25/367 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +I V +DSR ++ G +F+AI G + DGH FI +A AQGA A VV A Sbjct: 17 NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVV--------KYAVD 68 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P VV + L+ A+ ++A+TG++GK++ + I L Sbjct: 69 GITIPQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAI-----LPVPS 123 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +++ +P+ + + S + A+ G H + + Sbjct: 124 HATKGNLNNHI-------GAPLSVLQLTSQHR---YAVFELGANHPGEISHTVAIVHPDV 173 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ HI+ + AK + + L A++ DDAY+ + Sbjct: 174 TLITNIAPAHIEGFGSIDGVARAKGEIHQG-LSTSGIAVVNDDDAYAHFWDDILVDKKTL 232 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S+ + + + Q ++ + D +PG V NAL AA C A+G Sbjct: 233 RFSIEHPAEVYAQDIHLDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAACCHAVG 292 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + L V GR + ++ I Y S+ + L+ + G+ I Sbjct: 293 VAIKDIQHGLNNFGGVKGRLMILSGKNQSTVIDDTYNANLRSVLVALEVLAE-RPGKKIF 351 Query: 387 VFGCGGD 393 VFG G+ Sbjct: 352 VFGDMGE 358 >gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax ferrireducens T118] gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodoferax ferrireducens T118] Length = 480 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 75/407 (18%), Positives = 149/407 (36%), Gaps = 20/407 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ + I V +D+R + G +FVA+ G D H F+ QA AQGA A V ++ Sbjct: 17 VNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVAAVCQASD 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L+ A++ + ++AVTG++GK++V + I Sbjct: 77 AGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAIL 136 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + ++ + + + L + + + E ++ Sbjct: 137 RAYKPQAYLSTQGNLNNDIGVPLT-----VLRLRRQHEIAVVELGMNHPGEIATLAAIAQ 191 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + N R+H+++ T + + + LP A+ ADD YS Sbjct: 192 PTVAL------VNNAQREHLEFMATVERVAQENGSVIDA-LPAHGVAVFPADDTYSPLWA 244 Query: 258 KR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + + G + + QV +S + P+ G V N Sbjct: 245 DKAGSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKN 304 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEM 371 +L A +A G+ + L V GR + + Y +S+ Sbjct: 305 SLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRA 364 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + + ++ R++V+ G GD+ G+ A L ++ T Sbjct: 365 AIDVLASLPGPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFT 411 >gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica W22703] Length = 298 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 5/283 (1%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 L + L+ + + ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+ Sbjct: 4 RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + D S P++ + N + LS A + Y + ++ VTGT+GK++ Sbjct: 64 VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q + G +S +G TT S + + L L QG T ++E Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R+ + A FTNL RDH+DYH +Y AK LF + A Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 DD + + + A + + + + Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDN 284 >gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria marthii FSL S4-120] gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria marthii FSL S4-120] Length = 123 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 4/112 (3%) Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNR 445 GCGGDRD+GKRP M KIA+D A I T DNPRSE+P I ++I G+P ++ NR Sbjct: 10 GCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENR 69 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 +AIR AI DV+++AGKGHE ++ + E D R + L Sbjct: 70 RDAIRFAINEAKTGDVILIAGKGHEDYQLIGD-EVIDFDDRVEARIAIEKKL 120 >gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 300 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 138/305 (45%), Gaps = 20/305 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ R++ E++ DSR AG +FVA+VG++ DG +IP Sbjct: 5 NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + EN+ +A Sbjct: 54 QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G +S +G TT S + + L+ L Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Y AK L+ Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AI+ ADD + + +A ++ G+++ + V + + Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291 Query: 295 VEGKD 299 + Sbjct: 292 SSWGE 296 >gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] Length = 450 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 151/408 (37%), Gaps = 31/408 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 + +L+ +F + Q +I EV+ D+R + AG +FVA+ G + DGH F Sbjct: 1 MSELLNAEFI-------VSDKQGDNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAED 53 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 V++ S + P LVV +TR L FA+ + + P ++A+TG Sbjct: 54 ---------AVAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTG 104 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK+SV I + G + G + P+ L + + Sbjct: 105 SSGKTSVKEMTAAILRECGNVLYTAGNFN----------NDIGVPLTLLRLTAE---YDF 151 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A+ G + D + + NL H++ + AK +F L + Sbjct: 152 AVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGT 211 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I + + + R + + V T+ Sbjct: 212 AIINADSNDWPHWQETLHNKRVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTI 271 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG + NAL AA L +++G D + V + L +L VPGR + + + Y Sbjct: 272 ELPLPGRHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATGKLLLDDTY 331 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G G+ +G+ A Sbjct: 332 NANVGSMTAAAQVLAEMPGYRVMVVGDMGELGETAIDCHRQVGEAAKQ 379 >gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Pseudomonas entomophila L48] gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Pseudomonas entomophila L48] Length = 455 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 87/472 (18%), Positives = 140/472 (29%), Gaps = 46/472 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L + + VS DSR + AG +FVA+ G + DGH ++ Sbjct: 5 MTLSQLTTALGARHVG---------ADASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+GA A +V + + P LVV ++R L + + ++A+ Sbjct: 56 ADVKAKGAVAALVEREIA--------DVDLPQLVVADSRLALGQLGALNRAAFDKPVVAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + I + G G + P Sbjct: 108 TGSSGKTTVKEMLAAILRTRGPVHATRGNLNNDLGAPLTLLEIAPE-------------H 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + AS G + G+ N E L + Sbjct: 155 SAAVIELGASRMG-EIRYTVGLTKPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKD 299 AI+ D KRA ++ H + T+ Sbjct: 214 GGTAILNLADKAFDIWRKRAGTHRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGS 273 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G V NAL AA A+G+ + + L + V GR S I Sbjct: 274 VPVQLNLLGIHNVSNALAAAAAAHAVGLSLSGIAAGLNAVQPVKGRTVAQVAPSGVRVID 333 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVT 416 Y S+ + + SGR ++V G G+ Q +G A D Sbjct: 334 DSYNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAV 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 N + + + E I +++ KG Sbjct: 393 GTN--------MAHAVKAFGEKGRHFATQAELIDAVRTEAASDTTILI--KG 434 >gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 466 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 26/408 (6%) Query: 14 LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +++ + + E+ I N V DSR ++ G++F A G DGH F+ A GA A++ Sbjct: 8 VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS D +++V++T L A+ ++AVTG+ GK+S Sbjct: 68 VSRG----DCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + Q + G P+ L + + V + + Sbjct: 124 LALCLQSRFKTLKTSGN----------YNNEIGLPLTLLQ---LDKTHQVAVLEMAMRGQ 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + +N+ + H++ + + AK + L A+I D Sbjct: 171 GELLQLATIAQPSSALISNVEKVHLETLGSLENIARAKAEVMAT-LGAGDFALINGDSPL 229 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +E A + + +++ + ++ + G+ PLP Sbjct: 230 LEE--AVRPYAAKKYRFGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFLPLPSRRWA 287 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ AA + +G+ + L + R E + G I Y S+ Sbjct: 288 MNAVAAAAMAFLLGVPLEEIKSSLLNFNPGSKRLEIIPLPDGGKIINDTYNANPLSMINA 347 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415 L+ R + G+++ V G GD +Q +G A+ D+ I Sbjct: 348 LETSRELQEKGKLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLIC 395 >gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 452 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 73/468 (15%), Positives = 148/468 (31%), Gaps = 35/468 (7%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ + KI V+ DSR +Q +F+ G DGH F+ Q+I Sbjct: 1 MIEVTLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + P++ V +T L A ++AVTG++ Sbjct: 61 QDGAAAAFYQTGQEIDSSLEEQ----PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSN 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + + G +N + P I Sbjct: 117 GKTTTKDMIESVLKTQFKVKKTQGN--------YNNEIGMPLTI-------LELDYDTDI 161 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E G + L AK + K++ Sbjct: 162 SILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGI 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 IY D +++ + + + N+ + Sbjct: 222 FIYDGDE---PLLQPHVAQVKHAKLISVGLEQNNTYVCTIDSNQNDGIAFNINNTEHYEL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ ++ +++ + + R E T + I Y Sbjct: 279 PILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420 + S++ + + + GR I++ GD Q +G+ D Sbjct: 339 SPTSMKASIDTLSNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELY-----T 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E+ + I + ++ I + L D ++V KG Sbjct: 393 FGEEAQYIHRSGQPYVSHAQHFESKEAIIEQLKKELVAGDKVLV--KG 438 >gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] Length = 453 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 80/467 (17%), Positives = 158/467 (33%), Gaps = 33/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + Q+ + I V+ DSR I+ +F+ G DGH F+ QA+ Sbjct: 1 MINVTLKQIKAWIDCEIDEQYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A SL PI+ VD+T + L A ++AVTG++ Sbjct: 61 KDGAGASFYQKDVSLPKDIEG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + +S L Sbjct: 116 GKTTTKDMIECVLNTEFNVKKTQGN----YNNEIGMPLTILD-LDKNTDISILEMGMSGF 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E S + TN+G H+ +++ A L Sbjct: 171 HEIELLSTIAE--------PDIAVITNIGESHMQDLGSREGIAQA-KSEITIGLKSNGTF 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I D+ K +++ A C + + + TI+ + + + Sbjct: 222 IYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCSVNDQVETEGIAFTINHQQE---YEL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ + +++++ + R E T + I Y Sbjct: 279 PILGIHNMKNAAIAIAVGQELGLSYKTIQHNIKRVKLTGMRMERHETEQQVTVINDAYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421 + S++ + + + +IIV+ GD Q +G D I Sbjct: 339 SPTSMKAAIDTLSNMNGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLI-----TF 393 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + ++ + I ++ D +++ KG Sbjct: 394 GSEATFIHNTGKSYVDEAHHFNDKEKLISYMTHIVQPDDNVLI--KG 438 >gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] Length = 460 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 177/471 (37%), Gaps = 34/471 (7%) Query: 6 LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + +L + S+F I VS D+R IQ G +++ I G + +GH F+ +A Sbjct: 1 MIKRTLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A + + ++ +++VD+T + L A + ++ +TG+ Sbjct: 61 IENGALATLWNKDEENP------PTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V+ + + G +N + P I L + + Sbjct: 115 NGKTTAKDMVKAVLDTTYRVLKTDGN--------FNNHIGMPLTI-----LRLDETHDIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + + + TN+G H+ ++ AK+ + L P Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQL 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + R N ++ G + + + F Sbjct: 222 VYNG----DEPLLTSRVVNPVFETVTFGSSEQNDLYPSAISAEELGTTFTVSRETTYPFF 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V+NAL A + G+D+ + + L++L + R E V I Y Sbjct: 278 IPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYN 337 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA-IVTDD 418 + S++ + + + + I+V G GD+++ +G+ A+ V Sbjct: 338 ASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQ--AEKIDYVLTY 395 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P S + E+ + + E ++ + ++DV++V A +G Sbjct: 396 GPLSVEIEQGAKNNFAE-DKVMHFEEKDELVKKLTAITTREDVVLVKASRG 445 >gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] Length = 474 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 86/452 (19%), Positives = 152/452 (33%), Gaps = 47/452 (10%) Query: 30 INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + V DSR + G +FVA G + DGH + AI GA A++ + Sbjct: 26 VTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEGAIRAGAVAVLGTRPVPA--------- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+++VD+ + L A + + P ++ +TG+SGK+S + + R G + Sbjct: 77 -VPMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSGKTSTKDLIAALTSRLGPTVAPP 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLI 205 G + P ++ +E + G+ R + Sbjct: 136 GSFNNELGHPYTALQAGPD---------------TRYLVLEKGARGVGHIRYLCDVVPPQ 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G HI +++ AK L L + D M A Sbjct: 181 ISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVL--NADDGLVAAMATRTQARV 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + V + T+ + L G QV N+L AA + + Sbjct: 239 IRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSLAAAAVAREL 298 Query: 326 GIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383 G+ L + E V R + I Y S+E+ L+ + +I R Sbjct: 299 GMPLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASMEVALRALASIGQRRR 358 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 + V G G + +G++A +L D +V E I Sbjct: 359 TVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVV-----GEAAAPIHEGATSVRDWG 413 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ ++ +A+ L DV++V KG Sbjct: 414 GESVQLTDQADAVEVLRGDLRPGDVVLV--KG 443 >gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] Length = 453 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 150/405 (37%), Gaps = 25/405 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + + I+EVS+D+R + G +FVA+ G K D H + A+ Sbjct: 1 MISVSLRQLADVLGARLVG-EDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVN 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P LVVD+TR L A + + ++A+TG+SG Sbjct: 60 DGAAALLVSK---------HLPIDVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++ G + G + P+ L + + Sbjct: 111 KTSVKEMTAAILRQCGNVLYTAGNFN----------NDIGVPLTLF---RLMPEHDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + ++ A NL H++ + + AK +F L + + Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFSGLPAQGVAIL 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ++ A R G + V + D P Sbjct: 218 NADSHDEARWHDALAGKTRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G V L +L VPGR + + Y Sbjct: 278 LPGRHNIANALAAAALSLAVGASLDAVKAGLAQLQAVPGRLFPIALAPGKLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G Q +G+ A Sbjct: 338 VGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARK 382 >gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] Length = 454 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 79/459 (17%), Positives = 148/459 (32%), Gaps = 30/459 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ L++ + E + V++DSR + G IFVA G K DGH F +A+ GA +V+ Sbjct: 9 LLEGLAVNALAQCETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVL 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + ++ ++ + + + + ++ VTG+ GK++ Sbjct: 69 NHPVEGVPEEKS-------VICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMT 121 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + G + + L + + + + V SH Sbjct: 122 YAAIAGFGSTIKTEGNQNNE--------------LGLPRTMFRIGKETQYAVVEMGMSHA 167 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + RL + Q LP+ +P ++ DD + Sbjct: 168 GEIERLSKCARPDVGIITCIGMSHIGNLGSQENICKAKLEICAGLPEGAPLVLNGDDPFL 227 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + H L V E F P G V Sbjct: 228 RKAVLPDHVRPVWFSLGDENADVCALSIQQDEKGMSFVLEDHEEGTFLVKIPAMGRHNVA 287 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A +G+++ V+ L R + V Y +S++ L Sbjct: 288 NALAAYCAATRLGLNARRVIAGLADFEQTGMRQKVVHARGVDVIEDC-YNANPDSMKAAL 346 Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 R R + G GD + +G+ A++ +VT E ++I Sbjct: 347 AMFREYPCKRRFALLGDMLELGDISRAAHEEVGRQAVENKVDYLVT----YGEQAKRIAV 402 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + +A T ++ + D L+V A +G Sbjct: 403 VAAAKGLPTLHADTYAQAAETLLDKMQPGDALLVKASRG 441 >gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 485 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 95/487 (19%), Positives = 176/487 (36%), Gaps = 42/487 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L D + + P E + + DSR +Q G ++VA+ G + DG F Sbjct: 1 MRLS---ASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFC 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA ++V + RS I+ V++T + A+ + +++A+ Sbjct: 58 INALDAGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAI 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + V+ + R+G G Q+N L P+ + L Sbjct: 118 TGSSGKTTTKNLVRDVLARAGSVVATQGN--------QNNELGVPATL-----LRAEEDT 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G + ++ TN+G HI+ ++ AK + + Sbjct: 165 QFVVVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKAN 224 Query: 241 ESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFIHLKKVCA 284 A I A D ++ + G + + Sbjct: 225 TGIAFINASDDFASMLPAYGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIEL 284 Query: 285 IH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + T+ L G V+NA AA + +G+ ++++++ LEK + Sbjct: 285 DEAGCARFTLHTPTGTASVHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLD 344 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKR 399 GR V T S + Y +S++ L + + GR I V G GD + Sbjct: 345 GRGRVVRTASGVVVVDDAYNANPDSMKASLGSFAAMHFAGRHIAVLGDMGELGDTAEEAH 404 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLN 457 +G + L I+ S RA + G+P I + A+ + ++N Sbjct: 405 ARIGSLVASLPIDLIICV---GSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVN 461 Query: 458 KQDVLVV 464 D ++V Sbjct: 462 AGDGILV 468 >gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 452 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 95/468 (20%), Positives = 173/468 (36%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + + V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] Length = 458 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 25/400 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 ++ + VS D+R I G +++ I G++ DGH F+ +AI GA A + Sbjct: 18 LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 N P++ V++T + L A + ++ VTG++GK+S V + Sbjct: 78 ------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 131 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + P+ + S + + + + SS G + Sbjct: 132 FKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSRGEIEFLSK 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + A TN+G H+ ++ A AK+ + L D + Sbjct: 179 LARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEPLLTNRVPS 236 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 N ++ G + + + ++ F P+ G+ VYN L + Sbjct: 237 MNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENIVFYLPVLGKHNVYNTLASMA 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G+ + + L L + R E V T + I Y + ++E + + Sbjct: 297 IAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356 Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + IVV G GD++ +GK+ + T Sbjct: 357 GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 396 >gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] Length = 461 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 25/400 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 ++ + VS D+R I G +++ I G++ DGH F+ +AI GA A + Sbjct: 21 LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP 80 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 N P++ V++T + L A + ++ VTG++GK+S V + Sbjct: 81 ------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 134 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + P+ + S + + + + SS G + Sbjct: 135 FKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSRGEIEFLSK 181 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + A TN+G H+ ++ A AK+ + L D + Sbjct: 182 LARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEPLLTNRVPS 239 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 N ++ G + + + ++ F P+ G+ VYN L + Sbjct: 240 MNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENIVFYLPVLGKHNVYNTLASMA 299 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G+ + + L L + R E V T + I Y + ++E + + Sbjct: 300 IAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 359 Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + IVV G GD++ +GK+ + T Sbjct: 360 GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 399 >gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] Length = 473 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 168/478 (35%), Gaps = 48/478 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+L + E+IN + VS ++R + G +FVAI G++ DGH F+ Sbjct: 7 LQNLSRRFGGEVINNSHA-------VNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVAN 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A QGA A+VV + S+ P +V +T L A I+A+TG Sbjct: 60 AQNQGAIALVVEKEI--------VDSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V ++ I + + + + L + Sbjct: 112 SSGKTTVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSLLSLKS-----------QHQY 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS+ G Q+ K N+ H++ + L Sbjct: 161 AVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDNIAK-GKGEIYNGLTNAG 219 Query: 243 PAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A+I D Y+ + +++ + + + + Sbjct: 220 VAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFD 279 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + K + + G V NAL A+ A+ I + + L + V GR + Sbjct: 280 LQLLEKSTEINLSVLGMHNVANALAASTCAYALNISIEDIAQGLSEFTGVAGRLHCLEGV 339 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA 410 + I Y NS + + +++ ++V+ GD + +G+ A + Sbjct: 340 NDSTVIDDSYNANPNSFCAAIDVLSDMSAKTVLVMGDMAELGDDSDSEHEKIGRYANEKN 399 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++T +SE+ K+ + + I A++ NK VL++ KG Sbjct: 400 IDLLLTLGR-QSEEASKVFSGDKQHFDSVEQL------ITVAVQQANKSTVLLI--KG 448 >gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T85] gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T85] Length = 417 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 156/374 (41%), Gaps = 9/374 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 21 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 81 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D + M V + + QQ T + Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 LPG + V N LVA + +G+ + L ++ VPGR E + +G VDY Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREI-RVPGRLEQIDRG-QGFLALVDY 375 Query: 363 AHTSNSLEMILKNI 376 AH +L +L + Sbjct: 376 AHKPEALRSVLTTL 389 >gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 445 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 74/462 (16%), Positives = 137/462 (29%), Gaps = 44/462 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L + +L+ + + +DSR +Q G +FVA+ G + DGH FIPQA+A Sbjct: 2 LTLRTVADLLQTPLQGDPHLLGLPVQAICTDSRQLQPGSVFVALRGERFDGHNFIPQALA 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++ + P V +T A + P +++A+TG++G Sbjct: 62 RGAVAVISQRPVAG-----------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + R G + AQ P V Sbjct: 111 KTTTKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPE---------------HQFV 155 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E + G + R + A + + A+ Sbjct: 156 VLEMAMRGPGEIRRLAQMAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQELGQGVAL 215 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D Q L + +V + P Sbjct: 216 LNGEDPLLLSTAA---------SLWSGQTLTYGLDQGDLRGEWDPQAQTVTVEGLTLPVP 266 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG N + ++G+D + E + + GR + Y + Sbjct: 267 LPGRHHALNWMGVLAALRSLGLDWERLREPIALPTPLEGRNRHLKLAGDVEIWDETYNAS 326 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421 ++ L + R + G G+ +G+ A L D ++ D P Sbjct: 327 PEAMIAALHLLAQTPGKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLD--PE 384 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 E + + E E + + + D L+ Sbjct: 385 GEMQPLLDQKPAAQTERCEEVS---ELLEILLHHVQAGDRLL 423 >gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] Length = 456 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 156/474 (32%), Gaps = 45/474 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +++D++ L+ ++ +S DSR ++ +FV ++G+K D H FI Sbjct: 5 RVKDILSATGGRLLCGSEEMILE-------NISIDSRTMKGNDLFVPLIGDKVDAHRFIG 57 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA GA A++ S + + S P + V++T+K L S + ++ +T Sbjct: 58 QAFDNGAAAVLTSRHDA-------MDSARPWIQVEDTKKALQAIGSYYRDRLILPLVGIT 110 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ V G ++ P Sbjct: 111 GSVGKTTTREMVACALSARYSVYKTPGNHNSQVGVPITISEIAPE-------------DE 157 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + + S G K+ TN+G HI+ TQ + K+ + + L Sbjct: 158 IGVIELGMSEPGELTVIARIAKIQMAVITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGG 217 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D + K G V T + K Sbjct: 218 --ILFLNGDDQFLKSTKAKEGCRTIYYGTGE-NCDYRALNVHLEEGFPAFTAAFGQKQVP 274 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G V NA+V+ + GI + LE R + T G + D Sbjct: 275 VRLAVMGSHNVLNAMVSLAVAAECGIPMEKAAKCLEAFTGFRNRQQIYQTG--GITVIDD 332 Query: 362 -YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + S++ L+ + +IT R I V GD +G+ + +VT Sbjct: 333 TYNASPVSMKAGLEVLGSITKAKRRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVT 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468 E +I + P K + + E L + D ++ KG Sbjct: 393 L----GELAGEIARAVKEHAPCIQVKEFMEQDPLVSYLKEELKEGDCVLF--KG 440 >gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella frigidimarina NCIMB 400] gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 462 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 150/395 (37%), Gaps = 25/395 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ Q + ++ I VS+DSR+I A +F+A+ G + DGH F+ AI GA A++V Sbjct: 8 VLAQHLNGTLHGQDGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ +VV +T+K + + + +A+TG++GK+SV + Sbjct: 68 DHLLVDH----PFAADIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEML 123 Query: 134 QQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I + F G + I RL+ + + + + S+ Sbjct: 124 ATILSQHHQVLFTAGNFNNEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSSLVLPQV 183 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L N+G H++ + + A L + AII ADD + Sbjct: 184 AL--------------VNNVGNAHLEGFGSLEGVAQA-KSEIFNHLTPDGTAIINADDKF 228 Query: 253 SKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + +++++ + V + + T++ +G+ PL G Sbjct: 229 ADFMLQQSQGRKHLRFSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLH 288 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 QV NAL AA +CIA+ I + + L V GR + I Y S+ Sbjct: 289 QVSNALAAASMCIALDISLYDIAQGFALLKPVKGRMQPHDLGRV-LLIDDSYNANPTSVS 347 Query: 371 MILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMG 403 + ++ R +V+ G GD +G Sbjct: 348 AAINWLQQRDGYRCLVLGDLGELGDNAAPLHASIG 382 >gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 144/408 (35%), Gaps = 25/408 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + ++ + VS D+R I G +++ I G++ DGH F+ +AI GA A + Sbjct: 10 EQMVMGAGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATL 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 N P++ V++T + L A + ++ VTG++GK+S Sbjct: 70 WKKNVQNP------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDI 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 V + G + P+ + S + + + + SS Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSR 170 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + A TN+G H+ ++ A AK+ + L D Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEP 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + N ++ G + + + ++ F P+ G+ V Sbjct: 229 LLTNRVPSMNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENVVFYLPVLGKHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L + + G+ + + L L + R E V T + I Y + ++E Sbjct: 289 YNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAA 348 Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + + IVV G GD++ +GK+ + T Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 396 >gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 466 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 82/443 (18%), Positives = 148/443 (33%), Gaps = 24/443 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ L+ + E + S+D+R +F A+ G D H ++ A+A Sbjct: 1 MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGCVAVVVERECECE-------IDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 113 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L + Sbjct: 114 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 164 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + AK ++ L + Sbjct: 165 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 224 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + R + + S + V + + T+ + Sbjct: 225 NLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 284 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G+ V NAL A L +++G V LE+ +V GR V N I Y Sbjct: 285 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSYN 344 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ + + + RI V G+ + A + A IV Sbjct: 345 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 400 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN 444 ++ I + H + + Sbjct: 401 GKESAVISQQAEHHFTDKQQMVD 423 >gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] Length = 455 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 165/474 (34%), Gaps = 49/474 (10%) Query: 8 YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K ++ L I + E + + D+R I+AG +FV VG DGH F+ QA Sbjct: 2 KKTLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKA 61 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A ++ P++ VD+T L A+ + ++AVTG++GK Sbjct: 62 GASAAFWQKDVPNP------PADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + + + G + LT P +A ++ + V Sbjct: 116 TTTKDILSGMLRETFRVHRTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVL 174 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + + TN+G HI+Y +++ NAK + L Sbjct: 175 SQIAQPDIA------------IITNIGEAHIEYLGSREEIANAKFEIVTGLKADGLFIY- 221 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + ++ R ++ G + + + + D +F P+ Sbjct: 222 ----PGDEPLLTEHTALPARSVTFGRTDQATIFATTIKTSEEGTTFTTNQTADREFYVPI 277 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 GE V+N++ A +G++ + L + R E++ T + Y + Sbjct: 278 IGEHNVFNSMAAMLAAFELGVEPETIQTALRHIDRSKSRLEWLTTPKGSRILNDAYNSSP 337 Query: 367 NSLEMILKNIRTITS--GRIIVV--------FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +L+ +L + + + +V+ F ++ + G++A T Sbjct: 338 TALKTVLNTFLNMPTAAKKYLVLADMLELGDFSEQLHQESARTLENGEVAGVF---LYGT 394 Query: 417 -DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKG 468 N E I G + EA+ A+ + ++V KG Sbjct: 395 AMKNFADEAASLI------GQEKVHYFTD-KEALTDAVSNALTGNEWILV--KG 439 >gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-3A-US] gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus 214-1] gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus crispatus CTV-05] Length = 455 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 150/477 (31%), Gaps = 45/477 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH FI Sbjct: 1 MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + + ++ VD+ + A K ++ + Sbjct: 54 ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E ++ A + T +V + Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTVNDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGESIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ +L + + GR I V G + + + +A + D I+ + Sbjct: 330 IYNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLADTM-DPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + E+ +R+ I + D++V+ KG Sbjct: 389 VYLYGSEMKNLYDALQGKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVL--KG 441 >gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] Length = 458 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 89/481 (18%), Positives = 165/481 (34%), Gaps = 52/481 (10%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + +W ++ VS+D+R IQAG ++V + G +GH F+ +A Sbjct: 1 MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA A++ + + D+T L A+R + ++ VTG+ Sbjct: 61 AQKGAVAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + P+ L S + Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + + A TN+G H+ +++ AK+ + L Sbjct: 162 VVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + ++ V K + G Q + V I+ F Sbjct: 222 VYHGDEPLLTERVPKLSLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL A + GID + L +L V R E V T I Y Sbjct: 280 MPVLGKHHVYNALAAIAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--- 416 + S+ L ++ ++ R I V G GD + +G++ + T Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399 Query: 417 -------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467 P +D E + A+ A+ D++++ A + Sbjct: 400 LAHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446 Query: 468 G 468 G Sbjct: 447 G 447 >gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 455 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 86/465 (18%), Positives = 153/465 (32%), Gaps = 35/465 (7%) Query: 10 DFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 F E+ L+ V DSR +Q +F+A+ G K DGH F+ + +GA Sbjct: 7 TFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKGA 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A +VS+ + Q+ + PIL VD+ + L A + I+A+TG+ GK++ Sbjct: 67 AAAIVSNDFLRQN---KTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTT 123 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q+ Q+ +F G Q++++ P I + + Sbjct: 124 TKHLLFQLLQKHFSVAFSPGN--------QNSQIGLPLSILNHYHGHEDVLI----LEMG 171 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ++ G Q ++ T L H+ + + +AK + Sbjct: 172 MTAQGHIQKLIEIAPPDIAIVTALELVHVAGVHSLENIAHAKREILTHPKTM------LG 225 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 H G + Q+ S P G Sbjct: 226 LIPSEIPFYALLHETGTCRKQSFSTLSIQADYCLREQDQHLQIRDSQGLSPLLPRLPFLG 285 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + +N L A C A+G+ + + + + L + R E V I Y S Sbjct: 286 KHNQHNFLAAISACRALGMTWSDIQQVIPTLTLPERRLEQVIKKGI-LFINDSYNAALTS 344 Query: 369 LEMILKNIRT--ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++ L + SG+ I V G G + +G ++L D+ I D Sbjct: 345 VKAALDALPPPLQFSGKRIGVIGEMVELGTFSEACHREVGILSLAKLDLMICYGDGC--- 401 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I + I + + DV+++ KG Sbjct: 402 --LPIEEVWKKHNKPVHLTLTFEQVIAELKQHVLPGDVVLL--KG 442 >gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] Length = 455 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 89/405 (21%), Positives = 153/405 (37%), Gaps = 26/405 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L++Q + + +I V SDSR I +FVA+ G K DGH F A+ GA A++V Sbjct: 8 LLSQRLNGRLIGSDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGASALLV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +L + P L+V +T+K + + L +A+TG++GK+SV V Sbjct: 68 SRELAL---------DIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEMV 118 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I + + G + P+ L + + A+ G Sbjct: 119 ASILSQHHKVLYTAGNFN----------NEIGVPLTLL---RLEGDEEYGVFELGANHLG 165 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +K N+ H++ + + A L + A+I DD ++ Sbjct: 166 EIDYTSSLVKPDVAMVNNVASAHLEGFGSLEGVAKA-KSEIFNHLSADGIAVINLDDPFA 224 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + A ++ Q + V + + T++ PL G QV Sbjct: 225 DVMRGAASQFTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVS 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A +C+++G+ VL L+ + V GR R I Y S+ + Sbjct: 285 NALAATAICLSLGLSLEEVLSGLKLVEPVKGRM-LPHELGRVRIIDDSYNANPASVGAAI 343 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++ I R +V+ G GD +G+ A A+ T Sbjct: 344 DWLQEIDGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFT 388 >gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 452 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 455 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 160/475 (33%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + PS Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + ++ T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T V + Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQDKSTFGFREEDTVFATTFRSYMHHATFEVNDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENYEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y +++ + + + GR I V G + + +A L D AI+ + Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVKDGGRRIAVLGDMLELGDESAELHASLANAL-DPAIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + ++ P + + I + D++++ KG Sbjct: 389 LYLYGPEMKNLYDALVDKYPAANLHYYPQDEMNHMIDDLKNDIKPDDIVML--KG 441 >gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus amylolyticus DSM 11664] Length = 455 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 75/475 (15%), Positives = 153/475 (32%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNTTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + +L VD+ + + A K ++ + Sbjct: 54 AGAINNGASATLW------KKGHPNKPDDIAVLEVDDPLEAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQENFNNGIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLRED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + + + K T ++ + Sbjct: 215 GEFIYN-----GDEPLLAERAKKINQAKATFGFEDNDTVYATGFRSYKHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ + + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANRMEWEKGDVGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ +L + I GR I V G + + + +A L D ++ + Sbjct: 330 VYNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSPELHAGLANSL-DPQVINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ + + + + + + I + D++V+ KG Sbjct: 389 VYLIGDEMKHLYEALQTKYSEESLHYYQADHMDHMIDDLKNDIKPNDIVVL--KG 441 >gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] Length = 458 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 164/481 (34%), Gaps = 52/481 (10%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + +W ++ VS+D+R IQAG ++V + G +GH F+ +A Sbjct: 1 MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA A++ + + D+T L A+R + ++ VTG+ Sbjct: 61 AQKGAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + P+ L S + Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S G + K A TN+G H+ +++ AK+ + L Sbjct: 162 VVEMGMSGFGEIERLTMIAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + ++ V K G Q + V I+ F Sbjct: 222 VYHGDEPLLTERVPKLPLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ VYNAL A + GID + L +L V R E V T I Y Sbjct: 280 MPVLGKHHVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYN 339 Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--- 416 + S+ L ++ ++ R I V G GD + +G++ + T Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399 Query: 417 -------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467 P +D E + A+ A+ D++++ A + Sbjct: 400 LAHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446 Query: 468 G 468 G Sbjct: 447 G 447 >gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 464 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 82/443 (18%), Positives = 148/443 (33%), Gaps = 26/443 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ L+ + E + S+D+R +F A+ G D H ++ A+A Sbjct: 1 MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L + Sbjct: 112 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + R + + S + V + + T+ + Sbjct: 223 NLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G+ V NAL A L +++G V LE+ +V GR V N I Y Sbjct: 283 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ + + + RI V G+ + A + A IV Sbjct: 343 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 398 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN 444 ++ I + H + + Sbjct: 399 GKESAVISQQAEHHFTDKQQMVD 421 >gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 97/451 (21%), Positives = 159/451 (35%), Gaps = 58/451 (12%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L D++ + Q + ++ V++D+R + G +FVA+ G + D H F Sbjct: 8 QLTDILNGEL------------QGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAD 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA A GA A++VS + + P L+V +TR A+ + + P ++A+T Sbjct: 56 QAKAGGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALT 106 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK+SV I + G + + G + TP Sbjct: 107 GSSGKTSVKEXTAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPE-------------YD 153 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A+ G + + A NL H++ + AK +F LP+ Sbjct: 154 YAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPEN 212 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI AD+ + S + + + T+ D Sbjct: 213 GIAIXNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L PLPG + NAL AA L ++G + L L VPGR + + Sbjct: 273 VLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDS 332 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y S ++ + R++VV G +G A A V Sbjct: 333 YNANVGSXTAAVQVLAEXPGYRVLVV---------GDXAELG--AESEACHVQV------ 375 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 E A GI + G + AI TA Sbjct: 376 GE------AAKAAGIDRVLSVGKQSHAISTA 400 >gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] Length = 454 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 175/473 (36%), Gaps = 39/473 (8%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + ++ + E +I V++D+R + G +F+ ++G +GH F +A Sbjct: 1 MIKRTVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A++ + A P+++VD+T L A + ++ +TG+ Sbjct: 61 VELGAAAVLWNQK------EANPPFGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + Q + G + L P +A Sbjct: 115 NGKTTTKDMIHSVLQTTYQVHKTDGNFNNH-IGLPLTILAMPEGTEIA------------ 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + + + TN+G H+ +++A +AK + + L + Sbjct: 162 VLEMGMSAKGEIEFLSNLAEPETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + +++ A + + + + +K + VEG FL Sbjct: 222 YYL-----GDEPLIRDRATALSQQVKTFGEAEDCDIKVTHINQLAEGTEFQVEGYAQGFL 276 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NAL A + G++ + + L + + R E T I Y Sbjct: 277 IPVLGKHNVKNALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYN 336 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGK-IALDLADIAIVTDD 418 + S++ + + + I+V G G ++ +G+ I + D + Sbjct: 337 ASPTSMKAAIDLVGDMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---- 392 Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 I G ++ E + ++ DV++V A +G Sbjct: 393 -TYGRLGAFIAEGAKKSFGDARVFSFMDKEELKKKLADVAGPDDVVLVKASRG 444 >gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis M50/1] Length = 470 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 171/480 (35%), Gaps = 43/480 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ + E+ + ++++I DSR +++G++F+A+ G K DGH FI Sbjct: 1 MK--NMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ +GA A++ S P + V++T + A+ ++ + Sbjct: 59 PQVFEKGALAVLSEQELSDPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + G + P+ + K Sbjct: 111 TGSVGKTSTKEMIASVLSQKYNVLKTEGNFN----------NEIGLPLTIFKI---REQH 157 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + HRL + TN+G H++ T+ AK FE L P Sbjct: 158 EVAVLEMGISEFG-EMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP 216 Query: 240 KESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286 + + + DD + K A A K ++ V + Sbjct: 217 EGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGL 276 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + I + + F P+ GE VYNAL A + +G+ + +E + + GR Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + Y S++ + + GR I V G G+ + ++ + + Sbjct: 337 NLIHKGGMTIIDDC-YNANPVSMKASIDVLAA-APGRKIAVLGDMGELGENEQELHAMVG 394 Query: 407 LDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 I + SE+ + + + E + + + D ++V Sbjct: 395 EHFEGKGIDALFAAGALSENLAQAVGK-CSKETEVHYFKTKDELMEELLPYVKSGDTVLV 453 >gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 452 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 168/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G +AI A Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400 >gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] Length = 464 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 144/388 (37%), Gaps = 28/388 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + +L L+ + E + +S+D+R +F A+ G K D H ++ +AI Sbjct: 1 MIKQTTQQLAQTLNAKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV ++ N P ++V++TR L A L + +A+TG+SG Sbjct: 61 QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K++V +I Q+ + G + TP Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239 V + A+ G + + + A N+ H++ + AK ++ + Sbjct: 159 FAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKAGG 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + + + KE+ + C + V N + T+ + Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGE 278 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P GE V NAL A L +A+G D V LE+ V GR + I Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV 387 Y +S++ + ++ + RI VV Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFVV 366 >gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 455 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 35/418 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + PS Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + ++ T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T V G Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ + + + GR I V G + + +A L D AI+ Sbjct: 330 VYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386 >gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis XB6B4] Length = 470 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 171/480 (35%), Gaps = 43/480 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ + E+ + ++++I DSR +++G++F+A+ G K DGH FI Sbjct: 1 MK--NMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ +GA A++ S P + V++T + A+ ++ + Sbjct: 59 PQVFEKGALAVLSEQELSEPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + G + P+ + K Sbjct: 111 TGSVGKTSTKEMIASVLSQKYNVLKTEGNFN----------NEIGLPLTIFKI---REQH 157 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + HRL + TN+G H++ T+ AK FE L P Sbjct: 158 EVAVLEMGISEFG-EMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP 216 Query: 240 KESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286 + + + DD + K A A K ++ V + Sbjct: 217 EGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGL 276 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + I + + F P+ GE VYNAL A + +G+ + +E + + GR Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + Y S++ + + GR I V G G+ + ++ + + Sbjct: 337 NLIHKGGMTIIDDC-YNANPVSMKASIDVLAA-APGRKIAVLGDMGELGENEQELHAMVG 394 Query: 407 LDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 I + SE+ + + + E + + + D ++V Sbjct: 395 EHFEGKGIDALFAAGALSENLAQAVGK-CSKETEVHYFKTKDELMEELLPYVKSGDTVLV 453 >gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica W22703] Length = 454 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 144/405 (35%), Gaps = 24/405 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L L+ + I EV+ D+R + G +FVA+ G + DGH F Sbjct: 1 MIKVSLHFLSTLLNAEYIGRDSVDITEVTIDTRKVTPGCLFVALKGERFDGHDFAED--- 57 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 V++ S + P LVV +TR L A+ + + P ++A+TG+SG Sbjct: 58 ------AVAAGAGALLVSKHLLVEAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV V I ++ G + G + TP + Sbjct: 112 KTSVKEMVAAILRQCGKVLYTSGNFNNDIGVPLTLLRLTPE-------------YDFAVI 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + D + + NL H++ + AK +F L + I Sbjct: 159 ELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAII 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + R G + V T+ P Sbjct: 219 NADSNDWPHWQETLHNKRVWRFSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIELP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G A V E L +L VPGR + + + Y Sbjct: 279 LPGRHNIANALAAAALAMSVGASLAAVREGLTQLQAVPGRLFPIELAAGKLLLDDSYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G G+ +G+ A Sbjct: 339 VGSMTAAAQVLAEMPGYRVMVVGDMGELGETAVDCHRQVGEAAKQ 383 >gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Lactobacillus crispatus ST1] gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus JV-V01] gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus 125-2-CHN] gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus MV-1A-US] gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus crispatus ST1] Length = 455 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 73/477 (15%), Positives = 150/477 (31%), Gaps = 45/477 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH FI Sbjct: 1 MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + + ++ VD+ + A K ++ + Sbjct: 54 ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E ++ A + T +V + Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTVNDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGESIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ +L + + +GR I V G + + P + D D I+ + Sbjct: 330 IYNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGKNS-PELHAGLEDTLDPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + E+ +R+ I + D++V+ KG Sbjct: 389 VYLYGSEMKNLYDALQDKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVL--KG 441 >gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] Length = 456 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 167/468 (35%), Gaps = 38/468 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L ++ + + +IN +S+DSR +Q+G +FV + G DGH ++ QA+ Sbjct: 2 NLTSDQVATIVGGRRL--AAATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAV 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + P++ V++T + L A + +LAVTGT+ Sbjct: 60 EHGAAACLSE--------EVVGGLPVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTT 111 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + I G + +N + P + LA+ Sbjct: 112 GKTSTKEMLASI--------LAQGSDGLKTEGNFNNLIGLP--LTLARLSDEHR---WMV 158 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S HG + + + TN+G H+ + AK LF L + A Sbjct: 159 LELGMSQHGEIERLTEIAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSG-LKAGATA 217 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ DDA + G RV+ + + T+ V Sbjct: 218 VVNRDDA---LIAALPIPDGVRVIDFSLTYQTQVRATSIDSGQQASFTLHVGESQVRVEL 274 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG QVYNAL AA A+G + L + + GR E + Y Sbjct: 275 PLPGRHQVYNALAAAAAAHAVGCSLEQIATGLGCVKMAAGRLEVRTLPHGATVLDDSYNA 334 Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S++ L + G I V G GD Q +G++A A+ + D Sbjct: 335 NPQSMQAALSVLSDWPCQGTKIAVLGDMLELGDVSQACHEELGRLAAQRAEQVLCYGDW- 393 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ + E + + + D ++V KG Sbjct: 394 ----AAAVLKGVVEQGGQGAICTSHDEILDWLERQVREDDCILV--KG 435 >gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999] Length = 469 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 79/468 (16%), Positives = 161/468 (34%), Gaps = 34/468 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ Q++ +Q + I VS+D+R I A +F+A+VG +GH+F +A Sbjct: 1 MINLSLIDIAQQVNGT-LQGNDLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQ 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++ S + P+++V++T+ L + + K + +TG+SG Sbjct: 60 NGAVAMIASEPVEA---------HMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I + G G + P+ L + + + Sbjct: 111 KTTVKEMTTAILKECGSVLSTQGNFN----------NDIGVPLTLLRLEAEHEYAVIEMG 160 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + + + + + Sbjct: 161 ANHIGEIAYTTGLVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGLSKSGTAILNYD 220 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + ++ + + G + + A + + + + Sbjct: 221 SQFYDFWLGKLDNELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIELT 280 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG V NAL+AA L I +G V + L K+ V GR E + + + Y Sbjct: 281 LPGIHNVGNALLAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEKVRLLDDSYNAN 340 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S+ +K + + R++V+ GD+ + +G++A + T E Sbjct: 341 VASVTAAIKLLSSYEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYTL----GE 396 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKG 468 + G F ++A+ + L D ++V KG Sbjct: 397 LSKSASDMFGEGGQHFSHIEPLLDAL---YKELYANDNEFTILV--KG 439 >gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] Length = 455 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 35/418 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + PS Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + ++ T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T V G Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATIFRSYMHHATFEVNGSTQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ + + + GR I V G + + +A L D AI+ Sbjct: 330 VYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386 >gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] Length = 469 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 87/467 (18%), Positives = 163/467 (34%), Gaps = 36/467 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ + + + VS+DSR + G +FVA+ G + DGH FI A+++G Sbjct: 5 TLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 + +++ + + ++V +T + L A+ + + VTG++GK++ Sbjct: 65 IFLAEESWAAKH---ELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I ++G G + P+ + + + Sbjct: 122 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTIF---RLTGRERWAVFEIGM 168 Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + RL I + G TN H++ + + AK LF L S A+ Sbjct: 169 SEFG-EIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKPGSVAVYNV 226 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD + G + + T+ + + G Sbjct: 227 DDPLVSTCPTHLNVTRLTFGLRG--AEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYG 284 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +YNAL AA A+G+ L+ + LE+ RF+ I Y S Sbjct: 285 RHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDKRFQLEEVAGV-TLIDDSYNANPAS 343 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L ++ + GR++ V G G + +GK+A D + E+ Sbjct: 344 MAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGK--LVEE 401 Query: 425 PEKIRAEIIHGIPGFIEKGNRIE---AIRTAIEMLNKQDVLVVAGKG 468 K + G+P R A + + + D ++ KG Sbjct: 402 TAK--GALEAGLPAADLVLGRDHDQLA-QELLSFVQPGDCILF--KG 443 >gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] Length = 456 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 164/453 (36%), Gaps = 43/453 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + I V +D+R+I G +F+ IVG + +GH F+ QAI +GA+A + S+ A Sbjct: 23 EDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTK------EAD 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ V++T + L A ++AVTG++GK++ + +C+ Sbjct: 77 APEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCETLWKVQK 136 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +N + P I L+ + + S G + + Sbjct: 137 TQGN--------FNNHIGMPLTI-----LALQKDTEAVILEMGMSGFGEIELLSQIAEPD 183 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A TN+G H+ +++ A + L +P + + D+ + +++ + Sbjct: 184 AAIITNIGESHLQDLGSRENIAKA-KMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPH--- 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +L+ G++ + + + + + G V NA+ Sbjct: 240 PLLTFGHRDTNRYFPQEIVHEPNGTRFNVGGNEIGSYFITVLGAHNVLNAIAVIATARWF 299 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384 GI+ + + + + R E + I Y + S++ L+ ++ + Sbjct: 300 GIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMKGHQNK 359 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 VV G G+ ++ G + A + T + I G Sbjct: 360 YVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFT--------YGTLSEHIQKGALRRFE 411 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ I +L D++++ KG Sbjct: 412 EERAMHFSDKPALISHLKSVLKSDDLVLI--KG 442 >gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] Length = 452 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 92/465 (19%), Positives = 167/465 (35%), Gaps = 44/465 (9%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ ++ + ++ V++D+R + G +FVA+ G + D H F +A GA A++VS Sbjct: 9 LAEILRGELKGADLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + +N P L+V +TR A+ + + P ++A+TG+SGK+SV Sbjct: 69 RP---------LDTNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK +F L AI+ AD+ Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LSANGIAIMNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + ++ D L PLPG + N Sbjct: 226 NWQSIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +A+G + L+ L VPGR + + Y S+ ++ Sbjct: 286 ALAAAALSMAVGATHEAIKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVT-------DDNP--- 420 + + R++VV G + +G +A A D + T D Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVG-VAAKAAGIDRVLSTGKLSQAISDASGVG 404 Query: 421 -RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459 D + A + I + KG+R A+ + L + Sbjct: 405 EHFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQEN 449 >gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] Length = 452 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 155/386 (40%), Gaps = 19/386 (4%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 VS+DSR ++ G +F+A+ G + DGH FI AI GA +VS+ ++ Sbjct: 16 SGDNAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAI---- 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + + + V +TR L A+ ++ ++AVTG++GK++V + I + Sbjct: 72 LPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGL 131 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + T +++ L S + + + G Sbjct: 132 ENVLATTGNLNNDIGVP----------QMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAA 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN G HI+Y T +A AK +FE L ++ AII ADD +++ + A N Sbjct: 182 PTIAVITNAGTAHIEYLGTTEAIARAKGEIFEG-LEEQGVAIINADDPHARLWRQLAGNR 240 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ G + A + + + + + +PG VYNAL AA Sbjct: 241 PVVDFSMN--GTAAVSARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAAT 298 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A GI ++ + E L VPGR + +R I Y +S++ L + + + Sbjct: 299 AAGISTSSIAEGLHSFRGVPGRLQKKTGLNRSVLIDDTYNANPDSMQAALNVLAEMPGKK 358 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIAL 407 I+++ G G +G+ A Sbjct: 359 ILIIGDMGELGADTATFHHRIGQQAA 384 >gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 476 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 143/393 (36%), Gaps = 31/393 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G + DGH F+ A+A GA IVV + A S Sbjct: 27 ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAAGAGLIVV----AEHRLPAFGNSK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L+ + I+AVTG+ GK++ ++ + G + Sbjct: 83 VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVHASVAS 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207 + P+ LA+ + + E + D+ R + ++ Sbjct: 143 FNNHWGV----------PLTLARMPAD-----TDYGVFEIGMNHHDEIRPLVKMVRPHVA 187 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H+ + + AK +FE + A++ DD K++ + A AG Sbjct: 188 LITLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFKQLEELAEKAGVEH 246 Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + L++V +T+ + +PG V N L G + Sbjct: 247 IVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVKVGMPGRHIVQNMLAVLGAADLV 306 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRT 378 G D A V+ + L GR + G +D Y S+ Sbjct: 307 GADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHSTAPE 366 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + GR I V G + + + +A + D Sbjct: 367 GSRGRRIAVLGDMLELGRQSGKLHADLARPIVD 399 >gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 452 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G +AI A Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400 >gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 452 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGAIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 452 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] Length = 447 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 73/450 (16%), Positives = 148/450 (32%), Gaps = 43/450 (9%) Query: 6 LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + + + E I+ VS DSR+I G +F+ G DGH ++ AI Sbjct: 3 MINRSLNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAI 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A + + + P++VV++T L + + ++AVTG++ Sbjct: 63 DKGAYAALWQRDAGE------VPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSN 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G P+ L ++ Sbjct: 117 GKTTTKDMIEAVLSPHFKVKKTQGN----------YNNEIGLPLTL---CQLDEDTEISI 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S G + + TN+G H+ +++ AK + + L Sbjct: 164 LEMGMSGFGEISLLSHIAEPHIAAITNIGESHMRDLGSREGIAKAKYEITDGLTGPLFY- 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K +G+ + Q + + D ++ Sbjct: 223 ------DGDEALLKPLVKDNKDAHRIGFNEDNEYY---IHEMIMQDKHLQFKVNDDTYIV 273 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P G NA +A + +G+ + L++L + R E + I Y Sbjct: 274 PTLGSHNARNATIAIAIGSYLGLSPEQINHSLQQLKLTGMRMEQLEGKDGALLINDAYNA 333 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + S I+VFG G+ + +G + T N Sbjct: 334 SPTSMKAAIDTVSQMDSEVKIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNA- 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKG--NRIEAI 449 I F + EA+ Sbjct: 393 -------ARHISKAAEPFTTVQHFDTKEAL 415 >gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] Length = 455 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 142/418 (33%), Gaps = 35/418 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + PS Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + ++ T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T V G Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y +++ + + + GR I V G + + +A L D AI+ Sbjct: 330 VYNSNPIAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386 >gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 452 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 452 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G +AI A Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400 >gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea] gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] Length = 455 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 81/414 (19%), Positives = 148/414 (35%), Gaps = 29/414 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + + +L+ + + + VSSDSR I +FVA+ G+K DGH F A+ Sbjct: 1 MIPLNLSGICQRLNARLVG-ADVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTAVE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + N ++V +T++ + + L +A+TG++G Sbjct: 60 NGAIALLVDHE---------LPLNITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV V I + + G + I RL + + + + Sbjct: 111 KTSVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHKGEIDYT 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ L N+ H++ + + +A L A Sbjct: 171 SSLVKPDVAL--------------VNNVASAHLEGFGSLEGVASA-KSEIFNHLTPTGTA 215 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 II ADD ++ ++ + + + + +S + Sbjct: 216 IINADDGFASVMLAASTDYTQLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIAL 275 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG QV NAL A +C++ G+ + L V GR I Y Sbjct: 276 PLPGRHQVSNALAATAICLSFGLTLDEIKLGFSLLVPVKGRMLPTQLGRV-RVIDDSYNA 334 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 S+ + + I R +V+ G GD +G++A +++T Sbjct: 335 NPASVTAAVDWLHEIEGHRCLVLGDLGELGDNAPLLHTELGELARQKGLDSLLT 388 >gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 482 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 74/470 (15%), Positives = 154/470 (32%), Gaps = 14/470 (2%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D + + + + + + DSR ++AG IF A+VG + DGH +I A +GA Sbjct: 3 DSQRIADLVRGELTGDSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGAS 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++ + ++ V++ + A + ++A+TG++GK++ Sbjct: 63 VVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTT 122 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 V + + + + T + + G + Sbjct: 123 KDMVAAVLSEKYRTHKNLENQNNELGLPMTILKAT-ENTEVLILEMGMRGLGQIAFLCDI 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + + G + + + + L E A + Sbjct: 182 ACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVKQAEHDSH 241 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPL 306 + + R H R S+ G + H + + E + PL Sbjct: 242 RTFFYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSVTVRLPL 301 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PGE V +AL A + + + + L + + R E I Y Sbjct: 302 PGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLELQPGPGGSTLISDVYNANP 361 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSED 424 S++ L+ ++ + + G + Q R ++ +AD+ I + P +E+ Sbjct: 362 TSMKASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITVGPLAEE 421 Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEM---LNKQDVLVV-AGKG 468 R + G+ R AI+ A E+ LN+ +++ A +G Sbjct: 422 IA--RGALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRG 469 >gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 140/394 (35%), Gaps = 25/394 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 I EV+ D+R + AG +FVA+ G + DGH F V++ Sbjct: 4 KAHDNVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLV 54 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 S + P LVV +TR L FA+ + + P ++A+TG+SGK+SV V I ++ G Sbjct: 55 SKRLLVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGN 114 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + TP + + A+ G + D Sbjct: 115 VLYTAGNFNNDIGVPLTLLRLTPE-------------HDFAVIELGANHVGEIAYTTDLS 161 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + + NL H++ + AK +F L + I + + Sbjct: 162 RPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSHDWPHWQETLHNK 221 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R + + V + D PLPG + NAL AA L Sbjct: 222 RVWRFSPHAAEDIDFYASDVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALA 281 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++G D A V + L +L VPGR + + + Y S+ + + + Sbjct: 282 MSVGADLAAVRQGLTQLQAVPGRLFPIQLAAGKLLLDDSYNANVGSMTAAAQVLAEMPGY 341 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALD-LADIA 413 R++VV GD +G+ A D Sbjct: 342 RVMVVGDMAELGDTAVDCHRQVGEAAKQAGVDKV 375 >gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] Length = 464 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 147/384 (38%), Gaps = 20/384 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + +L L + E + +S+D+R +F A+ G K D H ++ +AI Sbjct: 1 MIKQTTQQLAQTLKGKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV ++ N P ++V++TR L A L + +A+TG+SG Sbjct: 61 QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +++ + T + D + P+ L + V Sbjct: 112 KTTVKEMT--AKILQKVTACEDQVLYTFGNLNNDLGV----PLTLL---RLIPEHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESP 243 + A+ G + + + A N+ H++ + AK ++ ++ K Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIV 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + + KE+ + C + V N + T+ + + Sbjct: 223 NLAHYYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P GE V NAL A L +A+G D V LE+ V GR + I Y Sbjct: 283 LPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKDNVLFIDDSYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387 +S++ + ++ + RI VV Sbjct: 343 ANVDSMKSAVSVLKQYPAFRIFVV 366 >gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 469 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 169/486 (34%), Gaps = 49/486 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ + + +N + + +++I ++ DSR + G +F+AI G + DGH FI Sbjct: 4 MTLRAMT-----QAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q +GA ++ ++ S + V+++ + L A ++ + Sbjct: 59 GQCFEKGAACVISEKELPDEEHS--------YIQVESSLQALKDLALLYRNNLDVKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + +G + T Sbjct: 111 TGSVGKTSTKETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTED-------------D 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S G + RL I + TN+G H++ T+ AK +F + P Sbjct: 158 EVAVLEMGISDFG-EMDRLSKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNP 216 Query: 240 KESPAIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + DD S+ KR G Y L + + + Sbjct: 217 DGIVILNGDDDKLSTISQVHGKRPLVFGISNKDGVYADNIKSLGLDGTSFTIHGLDTADK 276 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 FD P+PG VYNA+ AA + +G+ S + + L + GR + N Sbjct: 277 YSTFDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKENGFTI 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 Y S++ L + GR + + G G+ ++ +G Sbjct: 337 IDDC-YNANPVSMKASLDVL-DTAIGRKVAILGSMFELGENEKQMHYDVGMYLGTKDIDV 394 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVV- 464 ++T + +I A I + R + +++ +L D +++ Sbjct: 395 LITAGDL----AAQIAAGTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIK 450 Query: 465 AGKGHE 470 A G E Sbjct: 451 ASHGME 456 >gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] Length = 473 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 147/469 (31%), Gaps = 42/469 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL + + + + V +DSR G +FV I G + DGH + Sbjct: 1 MRL-DL--AEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYA 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ QGA A++ + + P+L+V +T + L A+ GK ++ + Sbjct: 58 ARAVEQGAVAVLAARPLE--------GLSVPVLLVQDTVRALGAVAALWRGKSSARVVGI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + + R G ++ + T Sbjct: 110 TGSAGKTTVKELLAHVLSRRGKTACNALNLNNQVGMPLCMLKTDGD-------------- 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 EA G L L + L Sbjct: 156 -EDFWVFEAGISHEGDMDELGAILQPDLALILNVGAAHTEGLGERGVAWHKSRLLAHLAP 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E A++ AD + + G + C+ Q + ++G+ Sbjct: 215 EGQALVSADYDDLVREARAVFGDVLFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPC 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D + P G++ N + A +G+ + + + P RF + Sbjct: 275 DVIAPFRGDYGTENCIAVAAAAHMLGLTAEEIAAGFADAQLPPQRFARSRRGNWDIVDDT 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-------FGCGGDRDQGKRPIMGKIALDLADIA 413 Y S+ +L R VV G DR+ + +G+ L + Sbjct: 335 -YNANPLSMARMLDAAAESAQKRPFVVVLGEMRELGGVADREHER---LGRHLAQLRPVL 390 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDV 461 + R + +R + HG+ G + EA A+ D Sbjct: 391 VFW----RGGHADAVRDGLEHGLYTGKFLPVDSGEAFVQALREHLPADT 435 >gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] Length = 476 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 89/453 (19%), Positives = 162/453 (35%), Gaps = 47/453 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G + DGH F+ A+A GA +VV + A S Sbjct: 27 ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAAGAGLLVV----AEHRLPAFGNSK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L+ + I+AVTG+ GK++ ++ + G + Sbjct: 83 VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVHASVAS 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207 + P+ LA+ + + E + D+ R + ++ Sbjct: 143 FNNHWGV----------PLTLARMPAD-----TDYGVFEIGMNHHDEIRPLVKMVRPHVA 187 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H+ + + AK +FE + A++ DD K++ + A AG Sbjct: 188 LITLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFKQLEELAEKAGVEH 246 Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + L++V +T+ + + +PG V N L G + Sbjct: 247 IATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAADLV 306 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMI----LKNIRT 378 G D A V+ + L GR G +D Y S+ Sbjct: 307 GADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHSTTPE 366 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-----DDNPRSED--PEKIRAE 431 + GR I V G + + + +A + D + T D ++ P +I+ E Sbjct: 367 GSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNALPVEIQTE 426 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + I+ + DV++V Sbjct: 427 YRQSTDELLP---------LVIKAVRPGDVIMV 450 >gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42] gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42] Length = 456 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 82/480 (17%), Positives = 172/480 (35%), Gaps = 37/480 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + + + + + ++ + I ++D+R ++ +F+ + G +GH F+PQA Sbjct: 1 MIKRTVKRIADMVKGTLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G A++ +++VD+T + L A + ++ VTG+ Sbjct: 61 FEKGVSAVLWDR------SEPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + L P +A Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + A TN+G H+ +++ AK+ L ++ Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ ++++ + LK++ I + F Sbjct: 221 LFYFGDEP----LLRQKTYTCRTTTYGAGADNDLRLKEIKQAEEGTYFNIDGIDRSFF-- 274 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G V NA+ A I GI L +L V R E V T + + Y Sbjct: 275 IPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ I T+ + ++V G GD ++ G + T Sbjct: 335 ASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFTYGT 394 Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477 + + R G + +++K + AI+ EM D+L+ A +G + IV + Sbjct: 395 LGAFIADGARRHFEEGRVSHYLDKKELLHAIQ---EMAASGDLLLFKASRGMKLEEIVKD 451 >gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri ATCC 33323] gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri ATCC 33323] gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] Length = 455 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 142/418 (33%), Gaps = 35/418 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + PS Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + ++ T +G HI++ T+ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T + + Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQDKSTFGFREEDTVFATTFRSYMHHATFEINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y +++ + + + GR I V G + + +A L D AI+ Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVQDGGRRIAVLGDMLELGDESAELHASLANAL-DPAII 386 >gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 487 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 93/480 (19%), Positives = 183/480 (38%), Gaps = 32/480 (6%) Query: 10 DFPELINQLSIFPM-----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 E+ LS+ P Q +++I V +DSR ++ G +F+A G + D H F+P+A+ Sbjct: 14 TVEEICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKAL 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGT 123 AQGA +V Y L A R+ P+L+ V +T + A+ + P ++A+TG+ Sbjct: 74 AQGAVCAIVQEDYRLP--PAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGS 131 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V Q+ + + G +NR+ P ++ + + Sbjct: 132 NGKTTTKEMVAQVVAQRWKTLKTEGNL--------NNRIGVPQTLFQLAPRHQAAVIEMG 183 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 ++ + R G TN+G DH+++ + + AK L + LP++ Sbjct: 184 VDQQGQTTRLCEIAR-----PTIGVITNIGPDHLEFFGSMEGSAQAKAEL-LDHLPQDGA 237 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDF 302 ++ ADD Y + RA +V + + + + + Sbjct: 238 VVLNADDEYFDYLAARAQCRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEI 297 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 G+ V NAL AA + +G+ + E L K R + ++ Y Sbjct: 298 RIRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFRPAAMRSQISLSHGVQVINDC-Y 356 Query: 363 AHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 S++ ++ + + G+ + + G D + R + +A + Sbjct: 357 NANPASMKAAVQLLAELGRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACG 416 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476 R + + + E + A M+ + DV++V A +G +V Sbjct: 417 VLGR--ELAEGARQAGMASDRITELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVE 474 >gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] Length = 454 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 86/424 (20%), Positives = 143/424 (33%), Gaps = 32/424 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q PM + ++ + +DSR IQ G +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQTLGLPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A GA A+VVS A L VD+T L A + + Sbjct: 55 EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + + + + ++ P+ L K Sbjct: 107 TGSSGKTTVKEMLAGVLRHRFGDEAVLATAGNFNNHI-------GLPLTLLKLNEKHRYA 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + L R+ G N R H+ E L Sbjct: 160 VIEMGMNHFGELSL-LTRIAG--PNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLS 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I +DA + + G +H + + + + Sbjct: 217 DGVALIPCEDANIATFEAATVQLNIQ--TFGIASGDVHAENIELKPLSCTFDLVRGNERV 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+PG V+NA+ AA L +A G+ A V + L+ + GR I Sbjct: 275 AVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415 Y +S++ + + + + R I V G G+ + + M A + A Sbjct: 335 TYNANPDSMKAAIDVLAAMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYF 393 Query: 416 TDDN 419 DN Sbjct: 394 VGDN 397 >gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] Length = 452 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 79/410 (19%), Positives = 157/410 (38%), Gaps = 29/410 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K E+ + + +N+V++D+R + AG +FVA+VG + D H F +AIA GA Sbjct: 7 KTLAEITGGT----LHGSDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A++VS + P +VV++TR + + + ++A+TG+SGK+S Sbjct: 63 QALLVSK---------HLPVAVPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTS 113 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V I ++ G + + G + T + + Sbjct: 114 VKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTAE-------------HQYAVIELG 160 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A+ G + D +K + NL H++ + A + LP AI+ Sbjct: 161 ANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKA-KGEIFQGLPAHGIAILND 219 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + S + + + ++ + + PLPG Sbjct: 220 ESNDWLNWQNTLQDKTVWRFSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPG 279 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + NAL AA L +++ + V + L+ L VPGR V ++ + Y S Sbjct: 280 RHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGS 339 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + ++ + + +++V G+ + +G+ A + ++T Sbjct: 340 MTAAVQVLSEMPGYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLT 389 >gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 462 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 82/463 (17%), Positives = 149/463 (32%), Gaps = 37/463 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ + +N++ DSR ++ G +FV I+G K D H F+ Q +GA A++ Sbjct: 10 VLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLT 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S + ++ + VD+T+K L L + I+ VTG+ GK++ + Sbjct: 70 SE--HKEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMI 127 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G +++ T V + + S G Sbjct: 128 AAALSARFHVYKTPGNSNSQVGVPITVSEITKE-------------DEVGVLELGMSEPG 174 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 K TN+G HI+ +++ + K+ + + L + DD Sbjct: 175 ELTVIARIAKPDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDD--- 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 R V + + + K + T GK L + G V Sbjct: 232 MLCRTRGKVGVKTVYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVM 291 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A +C G+ E L H R + Y + S++ L Sbjct: 292 NALAAIAVCCERGMTMEEAAEGLLTFHGFKHRQQVYADGRFTVM-DDSYNASPASMKAAL 350 Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + +T R I V G +G+ A + +VT + Sbjct: 351 DVFQGLTGKRHIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVT--------LGEACR 402 Query: 431 EIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKG 468 + G+ E + E ++ + D ++ KG Sbjct: 403 SLAEGVRAVKEIPVVEFSDCGEMVKYLEAEIRDGDCVLF--KG 443 >gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] Length = 464 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 88/468 (18%), Positives = 159/468 (33%), Gaps = 30/468 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ L+ + E + S+D+R +F A+ G D H ++ A+A Sbjct: 1 MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L + Sbjct: 112 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + R + + S + V + + T+ + Sbjct: 223 NLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G+ V NAL A L +++G V LE+ +V GR V N I Y Sbjct: 283 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ + + + RI V G+ + A + A IV Sbjct: 343 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 398 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468 ++ I + H + + + I IE ++++A KG Sbjct: 399 GKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQP--LVLLA-KG 443 >gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Lens] gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Lens] Length = 445 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 131/368 (35%), Gaps = 27/368 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 I VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ Sbjct: 17 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P VV + L+ A+ + I+A+TG++GK++V + S Sbjct: 72 ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 126 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +N + P L+ + A+ G H + ++ Sbjct: 127 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 173 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + A+ + + I DD Sbjct: 174 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 231 Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + I+ + + H + T+ + + +PG V NAL AA C A+ Sbjct: 232 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAV 291 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI + L V GR + ++ I Y S+ L+ + GR I Sbjct: 292 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 350 Query: 386 VVFGCGGD 393 VFG G+ Sbjct: 351 FVFGDMGE 358 >gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 452 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + LS + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLSA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 452 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] Length = 487 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 97/494 (19%), Positives = 168/494 (34%), Gaps = 51/494 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +L+Y P Q+ P W +R+I V DSR + G +FVA+ G + DGHL++P Sbjct: 3 RLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYLP 62 Query: 62 QAIAQGAEAIVVSSAY---------------------SLQDFSATIRSNTPILVVDNTRK 100 + +GA A +VS A + + VD+ Sbjct: 63 DVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPLC 122 Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 L A ++ +TG+ GK+S V + + + S + ++ Sbjct: 123 ALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRT--------LKSQRSFNS 174 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHID 218 +T P+ + + +E + R + G TN+G H++ Sbjct: 175 DITLPATL-------LGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLE 227 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278 + +A NAK L E L P + D M + A Sbjct: 228 RLGSIEAIANAKAELPESLPPDGWCIL--NADDPRVAAMAKRTPAHVVTYGFAPHADVRA 285 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 ++ + ++T+S +G+ PL G Y L A + +G+D + Sbjct: 286 VEVISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAI---AAG 342 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG---GDR 394 L R N + G +D + + L I + T GR I V G G Sbjct: 343 LRDPGERLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETPGRRIAVLGEMLELGSA 402 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 + +G A AD+ + +++ I + AI Sbjct: 403 TEEGHRQVGAAAARTADLLV--AVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLRS 460 Query: 455 MLNKQDVLVVAGKG 468 ++ D L+V KG Sbjct: 461 LIQAGDCLLV--KG 472 >gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] Length = 473 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 175/466 (37%), Gaps = 41/466 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 LI + + + + +S DSR + G IF I G+ DGH F QA +GA ++V Sbjct: 10 LITAIDGYAIGEIPETFSGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQAYERGAAVLIV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + + P++VV + + L A + I+AVTG+ GK++ + Sbjct: 70 ----AENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKTTTKEVL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +Q+ G + P+ LA+ + E + Sbjct: 126 KQVLATVGKVHANSASLNNHWGV----------PLTLARM-----PVESNYGVFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + + T++ H+ + + + +AK +FE L +E A++ ADD Sbjct: 171 KDEIRPLVKLVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEG-LDEEGIAVLNADDD 229 Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++++A + + + K + + + + +S+ G+D PG Sbjct: 230 FFPYLVQKAKQCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVD--YAHT 365 + N+L C AIG+D VL L GR + G +D Y Sbjct: 290 HIIQNSLAVIAACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNAN 349 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418 S+ L GR I + G + ++ R ++ + L A+ + Sbjct: 350 PASMRAALDLLAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFL--- 406 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + + ++ + N + + + ++ D+L++ Sbjct: 407 --FGEAMKFLATDLAAYV-KVHYAENIEKILPLILAEISNGDLLMI 449 >gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrospira platensis str. Paraca] Length = 465 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 43/469 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L + + +++D+R++Q G +FVA+ G++ DGH F+ AIA+ Sbjct: 7 LTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAK 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA VVS +++ P++ V +T + A + P ++ VTG+ GK Sbjct: 67 GALCAVVSREFAVSHPE------FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G G +N + P + ++ + + Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + G + G N+G HI ++ A AK L E+ + Sbjct: 168 MAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + G L+ H +V Sbjct: 228 HDNRRLMSTATQVWAGTTITYGLEGGI-----LQGELLGHETIRVEGIDLPLPLPGSHNA 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 L A + + L + GR + + Y Sbjct: 283 SNFLAALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGL 342 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422 S LK + R I V G G+R +G L D + D Sbjct: 343 ESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILAD---- 398 Query: 423 EDPEKIRAEIIHGIPGF--IEKGNRI--EA----IRTAIEMLNKQDVLV 463 + G G I+ + +A I + L D ++ Sbjct: 399 ---LAEAQAMAEGAVGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVL 444 >gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 473 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 93/460 (20%), Positives = 149/460 (32%), Gaps = 40/460 (8%) Query: 15 INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + + + ER + V +DSR + G +FVAI G + DGH F QA++ GA A++ Sbjct: 12 LAGGGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLA 71 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASF 132 P ++VD+T + L A P+ ++ +TG+SGK+S Sbjct: 72 DHPV-----------GVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDL 120 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q+ R G + G +T +L S + ++ A Sbjct: 121 GAQVLARLGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAP-- 178 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G N+G H+ +++A AK L E LP + A++ ADD Sbjct: 179 -----------PRIGVVLNVGSAHLGEFGSREAIAQAKGELVEA-LPADGTAVLNADDPL 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R + A +G + G V Sbjct: 227 VLGMRHRTRARVVTFGTSADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A + +G+ + + L + R E + I Y S+ Sbjct: 287 SNALAVATVAWVLGLGAEEIAAALREARPLSRWRMEVTTRDDGVTVINDAYNANPESMTA 346 Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427 L + T+ R I V G G +G+ A D IV D Sbjct: 347 ALTALAAATAARRIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIVV-----GADATP 401 Query: 428 IRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 I G + A L DV+V+ Sbjct: 402 IADGARRGGLAAEAVTVVPDAAAATALLTPALRAGDVVVI 441 >gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 477 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 91/448 (20%), Positives = 154/448 (34%), Gaps = 38/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I G F AI G++ DGH + A+A GA +VVS A A R Sbjct: 26 ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG + Sbjct: 82 VPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ V + G + ++ I+ Sbjct: 142 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVEMIRPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE L P + +D ++ + S Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 249 FGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 308 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL---KNIRTITSG 382 + L L GR + + G +D Y S+ + + G Sbjct: 309 MEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALLAASEPTSRG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439 R I V G MG+ A D+ + + A + +P Sbjct: 369 RRIAVLGDML--------EMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPES 420 Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464 + R E + + DVL+V Sbjct: 421 VHVEYRENTGELTDYVLNSVAPGDVLMV 448 >gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella adiacens ATCC 49175] Length = 461 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 165/464 (35%), Gaps = 32/464 (6%) Query: 9 KDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 E+ + Q R I V+ D+R + +FV + G + DGH +I QAI Sbjct: 4 GTVAEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A++ T + V++ + A K ++ +TG+SGK Sbjct: 63 GATAVLWGKK------DLTPPEGICAIWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ G + L P + Sbjct: 117 TTTKDMTAAALGARYRVYKTQGNFNND-IGLPQTILDMPESTE------------ALVLE 163 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + S+ + + + T +G H++ +++ AK+ + L K + Sbjct: 164 MGMSNFHEIEFLSKLARPEVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYP 223 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 +D + + + A ++++VG K + K + + + + P+ Sbjct: 224 AHEDLITAGIAQAEKPATFKIVTVGEGSKELSTKNIELYSDHTAFELVTPTETVAVTLPV 283 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G + V NAL+A + + + + ++ L + R ++V + + Y + Sbjct: 284 LGAYNVSNALLAIEIARTLEVPLSDIVSALANFELTKNRTQWVKGQNGVAILNDAYNASP 343 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 +++ ++++ ++ +GR ++V G G+ + + ++ +++A+V Sbjct: 344 IAMKSVIQSFVSVEATGRRVLVLGDIRELGEHSKELHASISEVISP-SEVALV---YLYG 399 Query: 423 EDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E+ E + + I ++ I L + D +++ Sbjct: 400 EEMEALYDALKDQFEIAALHHYMDKEALIADLKAELKEGDQVLI 443 >gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] Length = 437 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 86/442 (19%), Positives = 141/442 (31%), Gaps = 43/442 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + + L L P + I + +D+R +Q G IF+A+ G K DGH F+ Sbjct: 1 MTVTATLSQLAAVLSASLLNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA+GA A +V N P++ V NT A G+ ++ V Sbjct: 61 EMAIARGAVAAIVD--------YTYDYPNLPVIKVSNTLNAYQELAKWWRGQFGIPVIGV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + G G +N + P + S+ Sbjct: 113 TGSVGKTTTKELIASVLGTRGKVHKTYGN--------FNNEIGVPKTL-------LELSE 157 Query: 181 GVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G +E + G Q L I + +P Sbjct: 158 GDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMP 217 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 +S A++ D+ K+ + L +E Sbjct: 218 NDSVAVLNYDNPLLMTTAKQVWSGEVISYGFSGGDIQGKLVDYQ----------KIEVGG 267 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G N L A + + +D +LE + + GR + + Sbjct: 268 MTLPLPLTGVHNGSNFLAALAVAKVLDVDW-KLLEAGINVTMPQGRSQSWKLPKDIMILD 326 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415 Y ++ L+ + R I V G G+R +G+ L D +V Sbjct: 327 ETYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLV 386 Query: 416 TDDNPRSEDPEKIRAEIIHGIP 437 D P +E I A GIP Sbjct: 387 LVDGPDAE----IIATSAQGIP 404 >gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 472 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 89/470 (18%), Positives = 180/470 (38%), Gaps = 41/470 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + ELI + + + VS DSR + G IF I G+ DGH F QA A+GA Sbjct: 6 NKQELITAIDGVVIGNIPETFHGVSIDSRALAEGDIFFCIKGHHLDGHDFALQAYARGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++V + + + P++VV + + L + I+A+TG+ GK++ Sbjct: 66 VLIV----AEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q+ +G + + P+ LA+ + E Sbjct: 122 KEALKQVLATAGNVHANLASLNNCWGV----------PLTLARM-----PVESDYGIFEI 166 Query: 190 SSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + D+ R + + T++ H+ + + + AK +FE L +E AI+ Sbjct: 167 GMNHKDEIRPLVKLVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEG-LDEEGIAILN 225 Query: 248 ADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 AD A+ ++++A G + + + + + + N + + + G+D + Sbjct: 226 ADSAFFSYLVQKAKQCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIG 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD-- 361 PG V N+L C A+G+D ++ L GR ++ G +D Sbjct: 286 APGRHIVQNSLGVIAACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDES 345 Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAI 414 Y S+ L+ GR I V G + ++ R ++ I L A+ Sbjct: 346 YNANPASMRAALELLATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVF 405 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + E + + +++ + N + + + ++ D+L++ Sbjct: 406 L-----FGEAMKSLVSDLSADV-KVHYAENIEKILPLLLTEISPGDLLMI 449 >gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 153/417 (36%), Gaps = 32/417 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L + Q +IN V +DSR I G +F+A+ G K D H F Sbjct: 8 QLSRLTEGTL------YHVTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDFAA 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + QGA A++VS + + P +VV +TR + A + + ++A+T Sbjct: 62 DVVKQGAGALLVSRRLDI---------DCPQVVVKDTRLAMGKLAGWVRQQSKARVVALT 112 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK+SV I ++ G + + G + P+ L Sbjct: 113 GSSGKTSVKEMTAAILRQCGNTLYTAGNFN----------NDIGVPLTLF---RLTEEHQ 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240 + + A+ G + + + NL H++ + AK +F L P+ Sbjct: 160 FAVIELGANHIGEIAYTTAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAPEG 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + ++D + + R G + + + Sbjct: 220 TAIINLDSNDWGNWQHGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKI 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + + PLPG V NAL A+ L I++G + L L VPGR + ++ + Sbjct: 280 ELILPLPGRHNVANALAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAGKTVLDD 339 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAI 414 Y + S+ + ++ R++VV G G + +GK +A D Sbjct: 340 TYNANTGSMIAAANVLSQMSGYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVF 396 >gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] Length = 457 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 78/465 (16%), Positives = 156/465 (33%), Gaps = 43/465 (9%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L+ +++ ++ P + E+ +++D+R+++ G +F+A+ G K DGH + A+ Sbjct: 5 LLVGKLVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAV 64 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA ++ + +A+ P++ V+NT K A + ++AVTG+ Sbjct: 65 EKGALTVIAEA------TNASQLEGLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSV 118 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G + + TP Sbjct: 119 GKTTTKELIAAVLSTKGTVLKTQANYNNEIGVPKTLLELTPD-------------HDYAV 165 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G + G TN+G HI + +A AK L + Sbjct: 166 IEMAMRGSGQIAELTEIANPTVGVITNVGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAV 225 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + + + G + + + + +F Sbjct: 226 LNHDNQRLIDTAAQVWQGQTLTYGLEGGDVQGQLIAPEIL-----------KVEGMEFPI 274 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG N L A + +G+D + L + + PGR + + + Y Sbjct: 275 PLPGRHNALNYLAALAIGKLLGVDWETLRNGL-NVELPPGRSQRYELPNDVVILDETYNA 333 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNP 420 S+ L+ + R I V G G + +G+ L D + D Sbjct: 334 GVESMVAALEMLAQTPGKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDES 393 Query: 421 RSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLV 463 DPE I G+ + + + +E + D L+ Sbjct: 394 ---DPE--AEAIATGVTSVPVESFCDSNPLVEHLLEFVQPGDRLL 433 >gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] Length = 455 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 144/424 (33%), Gaps = 32/424 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q P+ + ++ + +DSR IQ G +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQTLGLPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A GA A+VVS A L VD+T L A + + Sbjct: 55 EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + + + + + ++ P+ L Sbjct: 107 TGSSGKTTVKEMLACVLRHRFGNEAVLATAGNFNNHI-------GLPLTLL---KLNEKH 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + + G N R H+ E L Sbjct: 157 RYSVIEMGMNHFGELSLLTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLS 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I +DA + + G +H + + + + + Sbjct: 217 DGIALIPCEDANIATFEAATAQLNAQ--TFGVASGDVHAENIELKPLSCEFDLVRGNERV 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+PG V+NA+ AA L +A G+ A V + L+ + GR I Sbjct: 275 AVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415 Y +S++ + + + + R I V G G+ + + M A + A Sbjct: 335 TYNANPDSMKAAIDVLAAMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYF 393 Query: 416 TDDN 419 DN Sbjct: 394 VGDN 397 >gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402] Length = 268 Score = 133 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 12/210 (5%) Query: 298 KDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K++ L G F V N L + G+D A ++E L + V GR + + Sbjct: 59 KEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDF 117 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +DYAHT +S I +I+ G++I +FG GG+RD KRP G+IA +DI Sbjct: 118 EVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIV 177 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 I+ D++PR ED ++ I G P +R AI+ A + K D +++ GK Sbjct: 178 ILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRPSAIKKAFSLAGKNDAVLLLGK 237 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLIL 497 GHE I + + R++L +L Sbjct: 238 GHENSIIFKD-RTMPYDEETTARKLLKTLL 266 >gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] Length = 458 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 163/473 (34%), Gaps = 46/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + +L+ Q S F + + I +++D+R IQ G +F+A+ G DGHLFI Sbjct: 1 MNVNELVTVLGSNFQKQKSYFNLSSFD-DIKVINTDTREIQKGDVFIALSGKNFDGHLFI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI +GA +++ +VV + K A+ K+ I+A+ Sbjct: 60 REAIEKGASIVILEQEA-----LVNSTYKVSHIVVGSALKAYQQIANWWRNKYKIPIIAI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + G +N + P + S+ Sbjct: 115 TGSVGKTTTKELIAASLGMYGQVHKTYDN--------YNNEIGVPRTL-------LKLSK 159 Query: 181 GVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E L++ RL I+ G TN+G HI +++A A + Sbjct: 160 HHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQA-KCELLSEM 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +S AI+ DD + R + L ++ + Sbjct: 219 SLDSIAILNNDDELLMKTAMRIWKGKTITYGLNKGDIIGKLINDR----------TLRVE 268 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 +F PL G N L A + ++ +D K+ + GR + + Sbjct: 269 GLNFPLPLSGRHNAINYLAALAVTKSLNLDWKKFT-KQIKVEMPQGRSQKNYLPGDIILL 327 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414 Y S++ L ++ R I V G G +G+ A L D+ Sbjct: 328 DETYNAGLESMKAALNMLKDTPGKRHIAVLGAMKELGVNSSQFHREVGETAQALGIDVLY 387 Query: 415 VTDDNPRSEDPEKIRAEII--HGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 + R E+ I I G+ + + I +++ D ++ Sbjct: 388 ILI---RDEEARAIPNGIKNIDGVRNIKVICCLSPEKLFEQLINDISEGDRIL 437 >gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Arthrospira platensis NIES-39] Length = 468 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 43/469 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L + + +++D+R++Q G +FVA+ G++ DGH F+ AIA+ Sbjct: 7 LTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAK 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA VVS +++ P++ V +T + A + P ++ VTG+ GK Sbjct: 67 GALCAVVSREFAVSHPE------FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G G +N + P + ++ + + Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + G + G N+G HI ++ A AK L E+ + Sbjct: 168 MAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + + G L+ H +V Sbjct: 228 HDNRRLMSTATQVWAGTTITYGLEGGI-----LQGELLGHETIRVEGIDLPLPLPGSHNA 282 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 L A + + L + GR + + Y Sbjct: 283 SNFLAALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGL 342 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422 S LK + R I V G G+R +G L D + D Sbjct: 343 ESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILAD---- 398 Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRI--EA----IRTAIEMLNKQDVLV 463 + G FI+ + +A I + L D ++ Sbjct: 399 ---LAEAQAMAEGAMGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVL 444 >gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 325 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 151/329 (45%), Gaps = 9/329 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ +FP R+ I E++ DS ++ +F+ + G +DG I A+ +GA A+ Sbjct: 3 MSLSQLFPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYE 62 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 + + + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ Sbjct: 63 AEGAGELPP----SDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T A ++ R TTP P+ + L+ L G V++E SS Sbjct: 119 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + FTNL RDH+DYH + +AY AK +LF + + DD Sbjct: 179 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINL--DDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + ++ S+ F++ ++ + + + PL G F Sbjct: 237 FGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + N L A G + +G +L L +L Sbjct: 297 LSNLLAAVGALLGLGYPLGDILRTLPQLQ 325 >gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] Length = 460 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 88/454 (19%), Positives = 165/454 (36%), Gaps = 33/454 (7%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +I Q + I +S+DSR I +F+A+ G++ D H FI +GA A++V+ Sbjct: 18 STITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI 77 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ P ++V +TR + A+ + I+A+TG+SGK+SV I Sbjct: 78 DVE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASIL 128 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + + G + TP + + A+ G + Sbjct: 129 RHCGETLYTHGNLNNDIGVPLTLFRLTPE-------------HRFAVIELGANHIGEIAY 175 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256 +D +K + NL HI+ + Q AK +F + ++D + Sbjct: 176 TVDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQ 235 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + + T+ PLPG + NAL Sbjct: 236 HFNSRQTQWSFSLSADTQADFYPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANAL 295 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A+ L +++G + + L L VPGR V + + Y S+ L+ + Sbjct: 296 AASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMMAGLQVL 355 Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + +I V G+ + +G+ A + ++T + + ++ Sbjct: 356 SQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGH-----YSQFISQENE 410 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G F K + + I +L + DV+ V KG Sbjct: 411 GGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441 >gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 457 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 101/467 (21%), Positives = 176/467 (37%), Gaps = 33/467 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+V+ S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGAVAVVIQQENSSI--------SIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + SS + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAASSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L K AI Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAI 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I A+ + K N + + GK +K V T+ + D P Sbjct: 223 INAEHNHLDVWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRS 422 +SL + +++ + RI+ V G+ +G+ + D+ Sbjct: 339 KDSLCAAIDVLKSYDAFRILCVADMKELGENSLAIHREVGQYVKSSNLDLVC-----SYG 393 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468 + I ++ F +K + ++ + IE L + +VV GKG Sbjct: 394 NESAVISDAVLG--KHFTDKVDMVDFLVPLIETQLQQNKKVVVLGKG 438 >gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 145/405 (35%), Gaps = 24/405 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L L+ + I EV+ D+R + G +FVA+ G + DGH F Sbjct: 1 MIKVSLHFLSTLLNAEYIGRDSADITEVTIDTRKVTPGCLFVALKGERFDGHDFAED--- 57 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 V++ S + P LVV +TR L A+ + + P ++A+TG+SG Sbjct: 58 ------AVAAGAGALLVSKHLLVAAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV V I ++ G + G + TP + Sbjct: 112 KTSVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------YDFAVI 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + D + + NL H++ + AK +F L + I Sbjct: 159 ELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAII 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + R +G + V T+ P Sbjct: 219 NADSNDWPHWQETLHNKRVWRFAPLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G A V E L +L VPGR + + + Y Sbjct: 279 LPGRHNIANALAAAALAMSVGASLAAVREGLTQLPAVPGRLFPIELAAGKLLLDDSYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV G G+ +G+ A Sbjct: 339 VGSMTAAAQVLAEMPGYRVMVVGDMGELGETAVDCHRQVGEAAQQ 383 >gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 452 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 504 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 84/489 (17%), Positives = 155/489 (31%), Gaps = 46/489 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L E++ + + + V DSR + AG +F+A+ G + DGH + A Sbjct: 3 ELTLGQIVEIVGG-ELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTA 61 Query: 64 IAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTR-------KFLSLFASRL---- 109 I QGA A++ + + T + + + + LS A + Sbjct: 62 IGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLA 121 Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 G H ++A+TG++GK+S F+ + +G + G + T Sbjct: 122 VGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCT----- 176 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + + A G H G+ N+G H+ ++ A Sbjct: 177 --------THTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQA 228 Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 ++ A++ ADD + + R + + Sbjct: 229 KGELVEALPAAADGGVAVLNADDPFVAAMAPRTTARVVTFSTANPPAPGAQYWAGDLELD 288 Query: 288 KQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVP 343 T+ + + GE QV NAL AA + I G+D V+ Sbjct: 289 DVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASA 348 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRD---- 395 R + I Y +S+ + + S R V G G+ Sbjct: 349 HRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAV 408 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 Q R + ++A + I DNP + +R + + A+ Sbjct: 409 QEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVDLLRHQ 465 Query: 456 LNKQDVLVV 464 + DV++V Sbjct: 466 VRDGDVVLV 474 >gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] Length = 454 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 85/483 (17%), Positives = 158/483 (32%), Gaps = 44/483 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L+ + E + +P ++ ++S+D+R I G +F+A+ G DGH F +A+ Sbjct: 3 KLMLSEIIEAVRGSYGYP---ANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAM 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A+V L+VD+T + L AS K ++ +TG+ Sbjct: 60 ELGAIAVVTERPVD----------GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSV 109 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + RS + + + + L + + Sbjct: 110 GKTTTKEMIYSVLSRSFKTLKTEANHNNEVGMPKTL-------LELDNTHQAAVIEMGMN 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 E S K TN+G HI+ +Q+ AKM + + Sbjct: 163 HKGEISRMS------TSCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLI 216 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + D + SV + ++ + A TI + + + Sbjct: 217 LC--RDDKLLAKAEIYGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARI 274 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 GE V NAL A A G+++ ++ L R + N + Y Sbjct: 275 NCLGEHNVKNALAAFCAGAAAGMENEDIIAGLADFRPEGMRQNIITENGMTFVLDC-YNA 333 Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQG---KRPIMGK-IALDLADIAIVTDDN 419 +S++ L + I GR V G + +G +G+ + D+ + N Sbjct: 334 APDSMKASLSVLSQISVRGRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKN 393 Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH---ETVH 473 I G + E + L + D ++ G +G E Sbjct: 394 STY----YIEGACDKGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEVYE 449 Query: 474 IVT 476 + Sbjct: 450 AIK 452 >gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] Length = 470 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 94/466 (20%), Positives = 158/466 (33%), Gaps = 39/466 (8%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++I + + P+Q ++ +S DSR + +F AI G + DGH F+ QA+ +GA Sbjct: 7 NTISQVIQRGATNPLQEL-AEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A VV + T + +L VD+ L FA + ++ VTG+ GK++ Sbjct: 66 AACVV------KRGEVTDPGSQLLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 S + ++ T S +N P I + + S V Sbjct: 120 TRSMI--------YTALSSCLTGIQSPANFNNEFGVPLSI------AGIESSHQFAVLEL 165 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A+SH + L I L H E LP AI+ Sbjct: 166 AASHVGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQIAETKGELFEQLPATGLAIVCG 225 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD ++ + R R+ + IS +L P+ G Sbjct: 226 DDPFADCLASRTTARKVRIGLGENNDLQAVSIEQDQQG------ISFRVNGQQYLLPVVG 279 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTS 366 V AL A + +GI V E L VPGR G +D Y + Sbjct: 280 RHFVNAALAAIAVARELGISEQDVAESLRNYSTVPGR---CHQMQIGDWTVIDDTYNASP 336 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 +S+ + + +G+ I+V G G + +G + + + Sbjct: 337 DSMRAACQVLHDHVGTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQAT 396 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + R+ + I + ++L DV++V KG Sbjct: 397 SVAQGARSAGMSH-TKIITAADVELLAEDVTDLLEPGDVVLV--KG 439 >gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] Length = 458 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 154/416 (37%), Gaps = 43/416 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L L+ + + VS+D+R +Q G +FVA+ G DGH +I Sbjct: 1 MKLSQLKLDSAKTLVGG---------DAEFFCVSTDTRSLQPGDLFVALRGEHFDGHAYI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI +GA A+VV + P VV +T + L A+ + ++ + Sbjct: 52 AQAIEKGACAVVVDT--------VQAEIAVPQWVVKDTVRALGFIAANKRAEFEGAVVGL 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK+SV ++ +C+++G + G + I + + L L Q Sbjct: 104 TGSSGKTSVKGMLEAVCRQAGPTVATAGNLNNH--------------IGVPQTLMRLEQQ 149 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V S G + I+ N+ H+ + A A+ + Sbjct: 150 AFAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAI--AQEKGDIYGGSN 207 Query: 241 ESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A+I DD Y++E + R + + G Sbjct: 208 LRCAVINLDDNYAQEFLARNGGITTIGFTASPIQYEKNSGVDTLIYGECLTPDGMGCYSF 267 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +EG F +PG+ V NAL AA +A+G+ L+ + + + V GR + V T Sbjct: 268 DLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQFQGVAGRMQRVST 327 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406 I Y S+ + ++V G G + + +G+ A Sbjct: 328 KCCHTLINDTYNANPGSMRAAANYLAHAKHSVMVVGDMGELGSDELAQHFDLGRYA 383 >gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 528 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 84/489 (17%), Positives = 155/489 (31%), Gaps = 46/489 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L E++ + + + V DSR + AG +F+A+ G + DGH + A Sbjct: 27 ELTLGQIVEIVGG-ELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTA 85 Query: 64 IAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTR-------KFLSLFASRL---- 109 I QGA A++ + + T + + + + LS A + Sbjct: 86 IGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLA 145 Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 G H ++A+TG++GK+S F+ + +G + G + T Sbjct: 146 VGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCT----- 200 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + + A G H G+ N+G H+ ++ A Sbjct: 201 --------THTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQA 252 Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 ++ A++ ADD + + R + + Sbjct: 253 KGELVEALPAAADGGVAVLNADDPFVAAMAPRTTARVVTFSTANPPAPGAQYWAGDLELD 312 Query: 288 KQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVP 343 T+ + + GE QV NAL AA + I G+D V+ Sbjct: 313 DVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASA 372 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRD---- 395 R + I Y +S+ + + S R V G G+ Sbjct: 373 HRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAV 432 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 Q R + ++A + I DNP + +R + + A+ Sbjct: 433 QEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVDLLRHQ 489 Query: 456 LNKQDVLVV 464 + DV++V Sbjct: 490 VRDGDVVLV 498 >gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 464 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G D V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376 >gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 464 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G D V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376 >gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 464 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 72/394 (18%), Positives = 132/394 (33%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPA 244 + A+ G + + + A N+ H++ + + AK ++ ++ Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ + + + V + T+ + Sbjct: 223 NQTFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIKIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G D V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376 >gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis HI4320] gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus mirabilis HI4320] Length = 460 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 165/454 (36%), Gaps = 33/454 (7%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +I Q + I +S+DSR I +F+A+ G++ D H FI +GA A++V+ Sbjct: 18 STITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI 77 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ P ++V +TR + A+ + I+A+TG+SGK+SV I Sbjct: 78 DVE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASIL 128 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + + G + TP + + A+ G + Sbjct: 129 RHCGETLYTHGNLNNDIGVPLTLFRLTPE-------------HRFAVIELGANHIGEIAY 175 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256 ++ +K + NL HI+ + Q AK +F + ++D + Sbjct: 176 TVNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQ 235 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + + T+ PLPG + NAL Sbjct: 236 HFNSRQTQWSFSLSADSQADFYPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANAL 295 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A+ L +++G + + L L VPGR V + + Y S+ L+ + Sbjct: 296 AASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMIAGLQVL 355 Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + +I V G+ + +G+ A + ++T + + ++ Sbjct: 356 SQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGH-----YSQFISQENK 410 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G F K + + I +L + DV+ V KG Sbjct: 411 GGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441 >gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 464 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMAAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G D V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376 >gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Paris] gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Paris] gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 445 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 131/368 (35%), Gaps = 27/368 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 I VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ Sbjct: 17 NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P VV + L+ A+ + I+A+TG++GK++V + S Sbjct: 72 ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 126 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +N + P L+ + A+ G H + ++ Sbjct: 127 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 173 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + A+ + + I DD Sbjct: 174 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 231 Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + I+ + + H + T+ + + +PG V NAL AA C A+ Sbjct: 232 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAV 291 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI + L V GR + ++ I Y S+ L+ + GR I Sbjct: 292 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 350 Query: 386 VVFGCGGD 393 VFG G+ Sbjct: 351 FVFGDMGE 358 >gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae L20] gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 464 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 134/384 (34%), Gaps = 20/384 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G D V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387 +S++ + ++ + RI V Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAV 366 >gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 455 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 68/410 (16%), Positives = 126/410 (30%), Gaps = 37/410 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ E I V+ DSR I G +FV I G + DGH F+ Sbjct: 1 MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + +L V +T K + A K ++++ Sbjct: 54 GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKP-------------IT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G ++ T +G HI++ ++ +AKM + + L Sbjct: 155 EILVLEMGMDRAGQLHELSQLVRPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + S + + G D Sbjct: 215 GEFIYN-----GDEPLLAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G V NA+ A + G + L R E+ + + Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGK 404 Y +++ + + + GR I V G R + Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379 >gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] Length = 501 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 159/474 (33%), Gaps = 42/474 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++++ KD + I + DSR QAG +F+ ++GNK DGH FI Sbjct: 47 MKNITVKDIVNATGG--FLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEP 104 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ + A A + S + + S P + VD+T K L + G++ + VTG Sbjct: 105 AMER-ASATLTS------EHDNVVISEKPFIRVDDTMKALQAIGKDIRGRYDIPYIGVTG 157 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ + G ++ T Sbjct: 158 SVGKTTTREMIAAAVGTGRHCFQTNGNENSQIGVPMTLSRMT-------------DGYDA 204 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G + D ++ T +G HI++ +TQ+ + K+ + + Sbjct: 205 AVIEMGISEPGQMEILSDIVRPSICVVTMIGVAHIEFMKTQENIRDEKL-SIVNHMKENG 263 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ DD +E+ V + + G+ Sbjct: 264 LLLLNGDDPLLREIKDDMSCQTLTFGIDEVCDFQGS--DVQCGEQGMEFDCTHNGETVHV 321 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + + G+ V NAL + +GI A + E R + +R + Y Sbjct: 322 VMDVLGKHNVRNALAGIAVAYQLGIPMATAAKAFEHFEGQRQR--IIRMENRYTILDDTY 379 Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTD 417 + +S++ + + + G+ V GD +G+ D IV Sbjct: 380 NASPDSMKASIDVLCDLDCKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVV- 438 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I+ + + + + E + ++ +D++++ KG Sbjct: 439 ----GEKALDIKKALDECDTKYAKTFSFMDNEEVALYLMAIMKPEDIVLL--KG 486 >gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 83/400 (20%), Positives = 150/400 (37%), Gaps = 23/400 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K L+ + + VS+DSRH+ G +FVA+ G + D H F+PQ + Sbjct: 2 KATLNLLQTAIKNATATGDAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A+V N P L+V +TR L AS + ++ VTG++GK++ Sbjct: 62 AAVVAEK--------IPAGLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTT 113 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + I + + ++ P+ L + + + + Sbjct: 114 VKEMIAAILDAAFGPDNYLATRGNFNNDI-------GVPLTLLRLNAACK---AAVIELG 163 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + G + G N R+H ++ ++ +A LP + A+ A Sbjct: 164 MNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQENG-AVLASLPADGVAVFPA 222 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DDA++ R++ A + L+ G+ A ++++ + F G Sbjct: 223 DDAFTPLW--RSYAAQRKTLTFGFSADADVRCTYAANVFGNDMSVTAGNQKFTIALSAAG 280 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 V NAL A +AIGI ++ L+ V GR + S I Y +S Sbjct: 281 VHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQRKLAASGALVIDDTYNANPDS 340 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + + + S RI+V+ G G+ + +G A Sbjct: 341 VRAAIDVLAQMASPRILVLGDMGEVGNDGRQYHEEIGAYA 380 >gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390 >gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] Length = 454 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 88/467 (18%), Positives = 168/467 (35%), Gaps = 35/467 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ N + E +I EV++D+R IQ+G +F+A+VG + D H F QA Sbjct: 1 MIALTLSDIANIVEGTQSGG-EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAAD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++V + + P ++V +++ L L + ++ + LA+TG+ G Sbjct: 60 KGAAALIVERQLDI---------DIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I G + G + +TP + + Sbjct: 111 KTTVKEMVASILSGLGQVLYTAGNFNNDIGVPLTLLRSTP-------------QDDFSVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +K N+ H++ + AK +++ L + I Sbjct: 158 ELGANHIGEIAYTTALVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALI 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 S F + T+ + + Sbjct: 218 NLDSQGESIWSEVLQDKNLITFSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQLS 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L GE V NA+ A+ L I G + L+ L V R + I Y + Sbjct: 278 LLGEHNVANAVAASALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLTEHITLIDDSYNAS 337 Query: 366 SNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 +++ + + G+ ++ G G +G+ A A ++T Sbjct: 338 VPAMKAAVDLLAQFKQGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLT----YG 393 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468 ED + I +++ G+ F + +E I I++ L+V KG Sbjct: 394 EDAKVI-SDLCGGM-HFQSHDSMLEYIERNLIQLNQTSHTLLV--KG 436 >gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus helveticus H10] Length = 455 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 147/475 (30%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + N ++ VDN + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PKNITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E K+ A + T ++ + Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ + + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDVGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ ++ + + GR I V G + + K P + D D I+ + Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK-KSPELHAGLCDTLDPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + + I + D++V+ KG Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVL--KG 441 >gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] Length = 459 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 41/473 (8%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ K E++ L I +R+ I V D+R I+ G +FV VG DGH F+ QA Sbjct: 2 ILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQA 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 GA A ++ P+++V++T L A + + ++A+TG+ Sbjct: 62 REMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + I + S + G + LT P +A ++ + Sbjct: 116 NGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEI 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 EVLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGIL 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 Y + ++ + R L+ G + + ++ D + Sbjct: 223 IY-----PYEEALLLSHIDGDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWEPDLEIF 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ GE V+NA+ IGI+ + + L + R E++ T + + Y Sbjct: 278 VPIIGEHNVFNAMATMLAAREIGIEGEKIQKALRNMERSKSRLEWLTTKNGTRILNDAYN 337 Query: 364 HTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTD 417 + +L+ +LK + R +V G+ + ++ + A + + Sbjct: 338 SSPTALKTVLKTFMHMDSQGKRKYLVLADMLELGELSEQLHKESAEVLEEGAVEKVFLYG 397 Query: 418 DN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAGKG 468 + E+ KI G + E++ TA + ++ + ++V KG Sbjct: 398 EAMKAFEEVAKI----KIGQRKVQHF-DTKESLETALLNEMDGNEWILV--KG 443 >gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon 107 str. F0167] Length = 466 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 162/472 (34%), Gaps = 47/472 (9%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++L ELI+ + + DSR + +FV IVG D H F+ Sbjct: 14 KELAAATGGELISG-------NENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAV 66 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G + + S ++ + I++VD+T K L + K ++ VTG+ Sbjct: 67 YNSGCKVAISSKK------DIFLKKDFNIVLVDDTTKALQSLGKYIRKKLNLPLVGVTGS 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V + S + + LS + + + Sbjct: 121 VGKTTTREMVA---------------LALSDLKVFKTPNNFNSQVGVPITLSRIKDEEIG 165 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S + + TN+G HI+ T++ K + + + + S Sbjct: 166 VIELGMSKFDEMEKIAKIVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGM-KENSV 224 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + AD+ KR + G + + + + + +EGK Sbjct: 225 VFLNADNDLLNNSPKREGIIYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVH 284 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 + GE Q+ NAL A + + +HLE R E + G + D Y Sbjct: 285 LNVFGEHQISNALAALAVADHYNLSIESAAKHLEDFRGFSHRQELIIRG--GLTVIDDTY 342 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI-AIVTDD 418 + +S++ + ++ + R I + G+ ++ +G + A+ T Sbjct: 343 NASPDSMKASISILKGFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTV- 401 Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E ++I + I + F + IR E L DV ++ KG Sbjct: 402 ---GELAKEIISNINENVLTKSFEDNETLENFIR---EYLKDGDVCLL--KG 445 >gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii DPC 6026] Length = 455 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 140/418 (33%), Gaps = 35/418 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ ++ I V DSR +F+ + G + DGH F+ Sbjct: 1 MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GAEA + + + ++ P++ V++ L A GK ++ + Sbjct: 54 SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKP-STEILVLEMGMDHP 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H E ++ T +G HI++ T+ +AKM + + L Sbjct: 167 GQLHHLSEL------------VRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + S + + T V G Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G + + + L R ++ + + Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y +++ + + + GR I V G + + +A L D AI+ Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLATSL-DPAII 386 >gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 415 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390 >gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 78/454 (17%), Positives = 140/454 (30%), Gaps = 39/454 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + + V+ D R +Q G FVA VG + DGH F+ +A +GA VV+ Sbjct: 20 HEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALG 79 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P + V N + + A G+ ++ +TG++GK++ + Sbjct: 80 --------PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGKTTTKE----------M 121 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + + P+ + + + + +E GL Q Sbjct: 122 VAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAM-----VLEMGMRGLGQIEELCT 176 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A + + D M+ + Sbjct: 177 IARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRTS 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A +G G I V + L G+ V NAL A + Sbjct: 237 ARILWYGMGE-GCDIRATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNALAAIAVG 295 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIRTI 379 +GI + L ++ GR V G +D A+ ++ + R Sbjct: 296 QTLGISLGDIQIGLGRVEAQRGRLRLV---DAGDVTVIDDAYNASPSSVGASLEVLERIA 352 Query: 380 TSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 G + V G G+ +G ++A D + E RA G Sbjct: 353 RPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCV----GVLAVEMARAAEEAG 408 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 +P E + + L DV++V A +G Sbjct: 409 VPVVRHFNALEELLASVGSYLQPGDVVLVKASRG 442 >gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 148/475 (31%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + N ++ VDN + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PENITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E K+ A + T ++ + Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ ++ + + GR I V G + + K P + D D I+ + Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK-KSPELHAGLSDTLDPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + + I + D++V+ KG Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVL--KG 441 >gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 453 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 145/402 (36%), Gaps = 25/402 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I EL L + I E+ DSR ++ G +FVA+ G + DGH F +A + Sbjct: 1 MIPTFLKELAEVLQGHSIGD-NVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQS 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA ++ + P +VV +TRK L A+ + + ++A+TG+SG Sbjct: 60 HGAVGLLSEC---------LLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++SG + G + TP + Sbjct: 111 KTSVKEMTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPE-------------HDFAVL 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + AS G + TNL + H+ + + AK + L P + I Sbjct: 158 ELGASQPGDIADTAALSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + K R + + + T+ P Sbjct: 218 HATSHDWPKWKSVFRGKRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG V NAL A+ L I++G D + + + L +L VPGR + + Y Sbjct: 278 LPGLHNVLNALAASALAISVGADLSAISKALSELKPVPGRAFPMILGPGKLLLDDTYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKI 405 S+ + + + R++VV G++ + +G I Sbjct: 338 VGSMIAATEMMSNMPGYRVMVVGDMAELGEQSKNCHKKIGNI 379 >gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] Length = 456 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 173/469 (36%), Gaps = 36/469 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + ++++ V DSR +Q G++FVAI G + + H FI Sbjct: 1 MK--NLSIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + GA +V ++ P ++V++T + L A ++ + Sbjct: 59 PDTVKAGAMCVVSHEDLG--------ETDFPYILVESTGQALLDIAKLYRDSFDMKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + +G + P +A ++ Sbjct: 111 TGSVGKTSTKEMIASVLAQKYHVHKTLGNFNN-EWGLPITIFDMPEDTEVAVLEMGVNHF 169 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G +S + TN+G H+++ +T++ K ++ +++ Sbjct: 170 GEMRRLSSVASPDI------------CVITNIGIAHLEFFKTREGILQEKSQMIQDMKNG 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S + DD SK + + + +++ +T+ +G F Sbjct: 218 GSIILNGDDDLLSKMSPVKGVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLK-DGSSF 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D L P+PG V NA+ A + +G+ + + +E L +PGR + T+ Sbjct: 277 DCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDHMIILDDC 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVT 416 Y S++ + + + GR + V G G+ + ++ A D+ Sbjct: 337 -YNANPISMKASIDVL-NMAIGRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCGI 394 Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D RS + E G + + I+ +++ D ++V Sbjct: 395 GDLTRS-----LVEEASKGANTEALWFADNESFIQAIPDIIKDGDNVLV 438 >gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 92/447 (20%), Positives = 157/447 (35%), Gaps = 35/447 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N+V +DSR ++ G +FVA+ G + D H F+ QGA A+VV Sbjct: 39 NDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAAVVVER--------VPPGLAL 90 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P +VV +TR L A + ++ VTG++GK++V + I + +G Sbjct: 91 PAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIATILAAAFGEEGYLGTR 150 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ P+ L + + + + + + R+ G Sbjct: 151 GNFNNEI-------GVPLTLFRLRAQHQAAVIE-MGMNHPGEIAVLSRIAA--PTLGLVN 200 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N R+H ++ T +A + LP + A+ ADD ++ + A + Sbjct: 201 NAQREHQEFMATVEAVARENGAVIRH-LPADGVAVFPADDDFTPLWREEAGARRVLSFGL 259 Query: 271 GYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 Q + A + QV + V F GE V NAL AA + GI Sbjct: 260 SAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGI 319 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V+ LE V GR + S I Y +S+ + + I R++V+ Sbjct: 320 AIEAVVRGLESFAPVNGRLQRKEARSGALVIDDTYNANPDSVRAAIDVLAAIAGPRVLVL 379 Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEK 442 G GD+ +G A E + G+ + Sbjct: 380 GDMGEVGDQGPQFHAEIGAYARSRGIPLFFGL----GELTKHAVTAYGATPQGVAQALHF 435 Query: 443 GNRIEAIRTAIEMLNK-QDVLVVAGKG 468 + A+ A+E ++V KG Sbjct: 436 DDIA-ALNAAVEQAAPQGATVLV--KG 459 >gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 452 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G A V L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390 >gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] Length = 448 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 177/471 (37%), Gaps = 41/471 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ +D+ L+ +P + KI+ V+ DS+ ++ G +F A+ G DGH F+ Q Sbjct: 1 MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQ 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A GA A VVS Y F ++VV++T + L I+ +TG Sbjct: 59 AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLLQGTIVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ +F Q + S + +++LT P + +A Sbjct: 113 SIGKTTTKAFTQTLLSSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI--- 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S Q L ++ TN+ H+ Q A+ ++L Sbjct: 162 --LEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQGIAE--EKSQILCNSR 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ D + +K++ +A + + + K + V IS D DF Sbjct: 218 VQLLPKDSPWYPHFIKQSMSAEKFSFAFYDETADFYYKVIRK----DSVVISTPEGDIDF 273 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P + N L++ L + + ++ L + P RFE N I Y Sbjct: 274 AVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSIRNGI-QIINDAY 332 Query: 363 AHTSNSLEMILKNI-RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 ++ L I G++I++ G G+ + ++ AL A+I Sbjct: 333 NACPEAMLAALDAIPHPSEGGKVILILGHMAELGNYSEEGHTVVANKALSKANIIFFI-- 390 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 E IR + HG + + I ++ + + D++++ KG Sbjct: 391 ---GEKWLPIRHLVKHGACEVSFYPS-AQGIEEMLKKVVQQGDIVLL--KG 435 >gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] Length = 457 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 151/415 (36%), Gaps = 26/415 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ + +++ I IN VS+D+R ++ G +FVAIVG++ D H F QA+ Sbjct: 3 DVSLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A++V L N +VV++T+ L ++ ++ + +A+TG+ Sbjct: 63 EANASALLVERKLDL---------NITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSC 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V V I Q+ G F G + P+ L ++ S Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLLRSESS---DDYAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + +K N+ H++ + A + L A Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAAGDTA 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303 I+ + + + S G + + + + + Sbjct: 220 IVNLESNGGDFWNEVLADKTVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATAVE 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ V NAL AA L I G + L L V GR E + I Y Sbjct: 280 LGIIGQHNVTNALAAAALSIQFGATLDEIKSGLANLISVKGRVEVQQLSQNIKLIDDSYN 339 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ K + + R +++ GD +G+ A A ++T Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394 >gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 85/467 (18%), Positives = 165/467 (35%), Gaps = 38/467 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I +L + + VS+DSR I+A +F+A+ G + D H F Q Sbjct: 1 MIPITLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A++V + N P ++V++TR + A + + ++ +TG+ Sbjct: 61 VEAGATALLVDH---------QLDVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGS 111 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK+SV I + G + + G + P+ L + Sbjct: 112 SGKTSVKEMTASILGQRGNTLYTAGNLN----------NDIGVPLTLFRLTDE---YQFA 158 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + A+ ++ + +K NL H+ + + AK +++ L + + Sbjct: 159 VIEMGANHPHEIEYTTNIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTA 218 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + + R + + + T+ + Sbjct: 219 IVNLDSYSDKWQFGSRQ----TVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEIT 274 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PLPG + N L A+ L I++G + + + VPGR V + + Y Sbjct: 275 LPLPGVHNIANVLAASALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDTKVVLDDTYN 334 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 S+ + + + RI+V G GD +G +A A + V Sbjct: 335 ANDGSMIAAINVLAKMPGYRILVAGDMGELGDYAHECHERVG-LAAKQAGLDKVLSVGQL 393 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 SE I ++ F K + + I + + DV+ + KG Sbjct: 394 SE----IISQSSERGEHFTVKQDL---LTRLIPLAQQNDVVSILVKG 433 >gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] Length = 457 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 88/465 (18%), Positives = 176/465 (37%), Gaps = 34/465 (7%) Query: 5 DLIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ F E++N + + K +S+D+R I IF+A+ G+ + + +I A Sbjct: 2 ELLK--FEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA +V + + + NT I++V+NTRK L A K I+ +TG+ Sbjct: 60 SDKGANLCIVD---EINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S G + + L + L + Sbjct: 117 TGKTSTKDLTAAALSSKYKVFKTQGNFNNE--------------VGLPLMIFSLDNSYDV 162 Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V S+ + HRL + K TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSNFEEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSI 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + +D + N + + + + N + T+ E + F Sbjct: 223 LIVNKEND----LLKNVKSNEYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ + N+++A ++ I+ + + ++ L V R + V + + Y Sbjct: 279 NIPVPGKHNILNSMLAIVAGRSLDIEYDKLKQGIKNLSVTSMRLDIVKKDGF-TIVDDSY 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +S++ + I TI R I + G GD + + A + ++T Sbjct: 338 NASPDSMKAAIDVITTIKGNRKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVG- 396 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + F E +A L ++D+++V Sbjct: 397 ----EFNEAYKEGYNNNLNFKEFNTIEKAADFITSNLKEKDIILV 437 >gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] Length = 461 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 145/382 (37%), Gaps = 18/382 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + +L L+ + ++ +S+D+R + +F A+ G D H ++ +A+A Sbjct: 1 MLKLNTQKLAEILNAKLVGNGLVEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV + P LVV++T+ L A + ++A+TG+SG Sbjct: 61 QGAVALVVQK--------INSHLDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q+S ++S + T + LT + Sbjct: 113 KTTVKEMTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLL---------RLTPEHQFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + K N+ H++ + + AK ++ LP AI Sbjct: 164 ELGANHQGEIAYTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRG-LPASGVAI 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I + YS + + + + + V + + + P Sbjct: 223 INKEHNYSIKWAQEIGERAIQYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLP 282 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G V + LE V GR + + Y Sbjct: 283 YLGEHNVKNALAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCENLLLLDDTYNAN 342 Query: 366 SNSLEMILKNIRTITSGRIIVV 387 +SL+ + ++ ++ RI++V Sbjct: 343 VDSLQSAISVLQKYSAFRILIV 364 >gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] Length = 455 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 148/472 (31%), Gaps = 46/472 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L L+ + + VS DSR + AG +FVA+ G + DGH ++ Sbjct: 5 MTLSQLTAALSARLVG---------ADASFSGVSIDSRSVGAGELFVALAGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+GA A +V + + P LVV ++R L + + + ++A+ Sbjct: 56 ADVQAKGAVAALVEREVA--------NVDLPQLVVADSRLALGQLGALNRAGYDKPVVAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + I + G G + +P+ L + Sbjct: 108 TGSSGKTTVKEMLACILRTRGPVHATRGNLN----------NDLGAPLTLLEI---APQH 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + AS G + G+ N E L + Sbjct: 155 SAAVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKD 299 AI+ DD RA + H + T+ G Sbjct: 214 GGTAILNLDDKAFAIWKARAAAHKVISFARSDARADFHATDIGRDARGCPSFTLHGAGAS 273 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + GE V NAL AA A+G+ + + L + V GR S I Sbjct: 274 VAVQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLNAMQPVKGRTVAQIAPSGVRVID 333 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVT 416 Y S+ + + SGR ++V G G+ Q +G A D Sbjct: 334 DSYNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAV 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 N + + + E I +++ KG Sbjct: 393 GTN--------MTHAVKAFGANGRHFATQAELIEAVRAETASNTTILI--KG 434 >gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHR 198 GLDQ R Sbjct: 180 GLDQGR 185 >gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 455 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 79/465 (16%), Positives = 162/465 (34%), Gaps = 30/465 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L L+ + + ++ +S D+R IQ G +FV G +GH ++ QA +G Sbjct: 2 KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + P+L VD+ L A +H + +TG++GK+ Sbjct: 62 AGASLWQKD------EPNPPDGIPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + IG + PI + + V + + Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVAVLEM 162 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G + + TN+G H+ ++ AK + + + E Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQ-PEGLLFYD 221 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ +E++ + + + G + + + + + DF + Sbjct: 222 GDEPLLQELVAKEQHINAV--AFGLEPDNLLYADHIHANANGSSFTTHGMIEGDFFISVL 279 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ QV N L+A + +G+++ + LE + + R + V + I Y Sbjct: 280 GKHQVKNTLIAMLISNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPT 339 Query: 368 SLEM--ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S++ TI + +V+ G +Q + + + +I V R Sbjct: 340 SVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEYINEQ-EIDYVCLFGARMT 398 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ E + + AI +E+ N+ ++++ KG Sbjct: 399 HLYEVLKEDFE-ADRLLYTEDDYTAIIEKLELANESSIVLL--KG 440 >gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 455 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ E I V+ DSR I G +FV I G + DGH F+ Sbjct: 1 MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + + +L V +T K + A K ++ + Sbjct: 54 GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFLGSRDKIADAKMEITDFLQE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ + S + + G D Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G V NA+ A + G + L R E+ + + Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404 Y +++ + + + GR I V G R + Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379 >gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens TA208] gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens LL3] Length = 456 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 164/465 (35%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + + + + + + + I ++D+R ++ +F+ + G +GH F+PQA Sbjct: 1 MIKRTVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G A++ +++VD+T + L A + ++ VTG+ Sbjct: 61 FEKGVSAVLWDR------SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + L P +A Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + A TN+G H+ +++ AK+ L ++ Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ +++ + LK++ TI + F Sbjct: 221 LFYFGDEP----LLREKAYTCRTTTYGEGADNDLRLKEIKQAEEGTYFTIDGIDRSFF-- 274 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G V NA+ A I GI L +L V R E V T + + Y Sbjct: 275 IPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ I T+ + ++V G GD ++ G + T Sbjct: 335 ASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAINPAEIDHVFTYGT 394 Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + R G + +++K +EAIR E D+L+ Sbjct: 395 LGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLL 436 >gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] Length = 454 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 87/468 (18%), Positives = 172/468 (36%), Gaps = 34/468 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L K+ N + P + ++++ + +DSR +AG +FV I G + D H FI Sbjct: 1 MK--NLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + + A + + F P ++V ++ + A + ++ + Sbjct: 59 EQVMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + + Sbjct: 111 TGSVGKTSTKEVIASVLAQKYNTLKTQGNFN----------NELGLPLTIFRLRDE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + S G + HRL I + TN+G H+++ +++ AK +F+ L Sbjct: 158 EMAVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQS 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + D ++ V + I + Sbjct: 217 DDHIIL--NGDDDKLVTVQETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEES 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F L P+PG+ VYNAL A + + G+ + + +E L V GRF + + Sbjct: 275 FSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAPNYTVIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVT 416 Y S++ L + GR + + G G+ +R M K A +I ++ Sbjct: 335 C-YNANPISMKASLDVLTD-ALGRKVAILGDMGELGADERK-MHKEVGKHAAEKEIDVLL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S+D E+ ++ ++ E+L K D ++V Sbjct: 392 CVGELSKDMADAAGEVNSK-TQVRHFADKEALMKELPELLEKGDTVLV 438 >gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] Length = 464 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 73/438 (16%), Positives = 151/438 (34%), Gaps = 25/438 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS+D+R I+ IF+A+ G + +G+ + A +GA +V Y + + I T Sbjct: 27 RNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKGASICIVDEVYFKK---SEINECT 83 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V + + L A K ++ +TG++GK++ + + G Sbjct: 84 SVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKTTTKDLITSVLSAKFKVFKTEGNL 143 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +S V + + ++ G + T Sbjct: 144 NNQIGLP-------------HMIFRLNNSYDVAVLEMGMNNRGEIHSMAKAARPDIAVIT 190 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ R HI T++ AK+ + + + I D +K RV Sbjct: 191 NVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVI--NSDNDMLSNLKEDRFNIRRVGLE 248 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + +V + + + F +PG++ V N+L+A + + Sbjct: 249 ENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGKYNVLNSLLAVACGRILNMTYG 308 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E L+ + R E I Y S++ + ++ S R + V G Sbjct: 309 EIREGLKNIETTAMRMEICKGKKFN-VINDSYNANPESMKAAIDVLKNFKSKRRVAVLGT 367 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 GD +GK A + I I+ +ED ++ ++ + I E Sbjct: 368 MGELGDESCRMHEEVGKYAGENG-IDILIALGEYAEDFKRGF-QVTNKNGKCISFDTYAE 425 Query: 448 AIRTAIEML-NKQDVLVV 464 + ++ + D +++ Sbjct: 426 TLEFLLKKCIVEGDTVLI 443 >gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 88/468 (18%), Positives = 172/468 (36%), Gaps = 34/468 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L K+ N + P + ++++ + +DSR +AG +FV I G + D H FI Sbjct: 1 MK--NLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + + A + + F P ++V ++ + A + ++ + Sbjct: 59 EQVMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + + Sbjct: 111 TGSVGKTSTKEVIASVLAQKYNTLKTQGNFN----------NELGLPLTIFRLRDE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + S G + HRL I + TN+G H+++ +++ AK +F+ L Sbjct: 158 EMAVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQS 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + D ++ V K I + Sbjct: 217 DDHIIL--NGDDDKLVTVQETKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEES 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F L P+PG+ VYNAL A + + G+ + + +E L V GRF + + Sbjct: 275 FSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAPNYTVIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVT 416 Y S++ L + GR + + G G+ +R M K A +I ++ Sbjct: 335 C-YNANPISMKASLDVLTD-ALGRKVAILGDMGELGADERK-MHKEVGKHAAEKEIDVLL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S+D E+ ++ ++ E+L K D ++V Sbjct: 392 CVGELSKDMADAAGEVNSK-TQVRHFADKEALMKELPELLEKGDTVLV 438 >gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Spirochaeta smaragdinae DSM 11293] Length = 478 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 75/469 (15%), Positives = 158/469 (33%), Gaps = 43/469 (9%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 +I P + + I+ V+ DSR+++ G +FVA+ G + DGH ++ +A GA A++V Sbjct: 16 IIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLV 75 Query: 74 SSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS 128 + S ++ V++ L + + +AVTG+SGK++ Sbjct: 76 DHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTGSSGKTT 135 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + G ++ + P + + + Sbjct: 136 TKELLGSVLSMKAPTVVNPGNLNS--------EIGLPLAL-----FGVGPADHFGVFELG 182 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + G + TN+G H ++ F K ++ + E Sbjct: 183 INRIGEMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAHMQ-GEGFVFYPE 241 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD + R + R ++ + + + +PL G Sbjct: 242 DDDRIDALKSRYPSLAFRPYGPATLTGLETVEDLGTEGWLLR------YRGVSIHYPLLG 295 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + + N L +G+ L+ L V GR + Y +S Sbjct: 296 QHNLQNGCGVIALAFELGVSPELIGAALSAAAPVAGRCRLLRGAISVLDDC--YNANLDS 353 Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV----TDDN 419 E + + I ++ GR ++VFG + R IA D + T ++ Sbjct: 354 SERVFEYIASLPWDGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSES 413 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R + ++I+H ++ + + + + D++++ KG Sbjct: 414 FREISDQGSMSQILHFSENQFDELS-----ERLLAFVREGDLVLL--KG 455 >gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 455 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 64/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ E I V+ DSR I G +F+ I G + DGH F+ Sbjct: 1 MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFIPIKGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + +L V +T K + A K ++++ Sbjct: 54 GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ + S + + G D Sbjct: 214 DGEFIYNGDEP----LLAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G V NA+ A + G + L R E+ + + Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGK 404 Y +++ + + + GR I V G R + Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379 >gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 463 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 172/453 (37%), Gaps = 32/453 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ + ++NE+S+D+R ++ +FV ++G DGH FI QA+ +GA +V Q+F Sbjct: 19 LEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGAIGALVQKG---QEF 75 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 ++ ++ V++T + L + VTG++GK++ + I + + Sbjct: 76 PLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKDMIAGILETNFN 135 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + P+ L + + + + +S G + Sbjct: 136 VLKNEGNLNNQ----------IGLPLTLF---NLEPCHEIGVLEMGMNSLGEILSLAKTV 182 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN+G HI++ +Q+ A L ++ +I DD + K V + + Sbjct: 183 QPHIAVITNVGFSHIEHLGSQENILTA-KMEITTRLREKDYLLINGDDPFLKTVKEESKT 241 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + VC + + ++ K F PG VYN LVA + Sbjct: 242 YRIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVG 301 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + + + ++L + R E V Y + +S++ + + T Sbjct: 302 LHYQMTPLAIQKGFDRLELSKMRLEIVTYGDVKVINDA-YNASPDSMKAAITVLNQSTGI 360 Query: 383 RIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437 R I + G + ++G R I IA D I + + I E + G Sbjct: 361 RKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITV-----GKSAQWIAREAVEQGFS 415 Query: 438 GFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + AI+ +L+ +DV++V KG Sbjct: 416 QAHIYQTPSNDLAIKVLKTLLSPRDVVLV--KG 446 >gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] Length = 455 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 159/466 (34%), Gaps = 37/466 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + + +L+ + + + VSSDSR I +FVA+ G K DGH F A+ Sbjct: 1 MIPLNLSGICQRLNARLVG-ADGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMAVE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + N L+V +T+K + + L +A+TG++G Sbjct: 60 NGATALLVDHE---------LPLNIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV V I + + G + P+ L + + Sbjct: 111 KTSVKEMVATILSQRHKVLYTAGNFN----------NEIGVPLTLLRLEADDEFGVFE-- 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++H + + + N A L A+ Sbjct: 159 --LGANHQGEIDYTSSLVKPDVALVNNVASAHLEGFGSLAGVACAKSEIFNHLAATGTAV 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I ADD ++ ++ + + V + + +S + P Sbjct: 217 INADDQFASVMLSASMSFTQLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G QV NAL A +C++ G+ + L L V GR I Y Sbjct: 277 LSGRHQVSNALAATAICLSFGLTLDEIKLGLSLLLPVKGRMLPTQLGRV-RVIDDSYNAN 335 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S+ + ++ I R +V+ G GD +G++ ++ T E Sbjct: 336 PASVTAAIDWLQEIEGHRCLVLGDLGELGDNASLLHTELGELIKQRGLDSLFTL----GE 391 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LVVAGKG 468 G+ G I +E + I+ L DV ++V KG Sbjct: 392 LSANASRAF--GVDGHISLERLVEDLIKNIKQLQ-GDVTVLV--KG 432 >gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Coprococcus sp. ART55/1] Length = 455 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 75/473 (15%), Positives = 160/473 (33%), Gaps = 44/473 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ K+ E + + ++ +S+ + G +FV I+G + DGH FI A+ Sbjct: 3 DITVKNILEATGG--VLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A + S + + S+ + VD+T K L + ++ ++AVTG+ Sbjct: 61 QT-AAATLTS------EHDNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + G +++ PI +++ V Sbjct: 114 GKTTTREMITAAVSAGMKCFHTEGNYNSVY----------GEPITVSRMTDE---YDVAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G D + T +G HI+Y + + K+ + + + + Sbjct: 161 LELGIGEPGEMDILTDIAQPDICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGT-- 218 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + D +K G G + + Sbjct: 219 LYINGDDPMLYAVKDEIPCKVYTYGCGE-GMDFRATNIRMEDGYSVYDMVHGDDVVTVKV 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G V N+LVA + +G+ + E R + + + I Y Sbjct: 278 GVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYNA 335 Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDN 419 + +S++ + + G+ +V G G++ +G+ D IV Sbjct: 336 SPDSMKASTDVLCDMKCEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVI--- 392 Query: 420 PRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468 E +KI+ + + + + E AI + ++ +D++++ KG Sbjct: 393 --GEHAQKIKEALDACDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLL--KG 440 >gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] Length = 450 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 89/404 (22%), Positives = 145/404 (35%), Gaps = 27/404 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + I Q +I EV+ D+R + G +FVA+ G + DGH F V Sbjct: 5 LNAEYIISDTQRNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAEN---------AV 55 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ S + P LVV +TR L A+ + + P ++A+TG+SGK+SV V Sbjct: 56 AAGAGALLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMV 115 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++ G + G + TP + + A+ G Sbjct: 116 AAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------HDFAVIELGANHVG 162 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + D + + NL H++ + AK +F L + I + + Sbjct: 163 EIAYTTDLSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWP 222 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 H R S + +V T+ PLPG + Sbjct: 223 HWQETLHHKRVWRFSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIA 282 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA L +++G D A V + L +L VPGR + + Y S+ Sbjct: 283 NALAAAALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVGKLLLDDSYNANVGSMTAAA 342 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 + + + R++VV GD +G+ A A D Sbjct: 343 QVLAEMPGYRVMVVGDMAELGDTAIDCHRQVGE-AAKHAGVDKV 385 >gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci RD1] gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] Length = 448 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 174/471 (36%), Gaps = 41/471 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ +D+ L+ +P + KI+ V+ DSR ++ G +F A+ G DGH F+ Q Sbjct: 1 MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQ 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A GA A VVS Y F ++VV++T + L I+ +TG Sbjct: 59 AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLFQGTIVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ +F + S + +++LT P + +A Sbjct: 113 SIGKTTTKAFAKTFLSSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI--- 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S Q L ++ TN+ H+ Q A+ +L Sbjct: 162 --LEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQGIAE--EKSHILRNSR 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ D + MK++ +A + + + K + V IS D DF Sbjct: 218 VQLLPKDSPWYSYFMKQSVSAEKFSFAFYDETADFYYKAIRK----DSVVISTPEGDIDF 273 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P + N L++ L + + ++ L + P RFE N I Y Sbjct: 274 AVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSVRNGI-QIINDAY 332 Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 ++ L I + G++I++ G G+ + ++ AL A I Sbjct: 333 NACPEAMIAALDAIPNPSEGGKVILILGHMAELGNHSEEGHTVVANKALSKASIIFFI-- 390 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 E IR + H + + I ++ + + D++++ KG Sbjct: 391 ---GEKWLPIRHLLKHDTCEVSFYPS-AQGIEEILKKVVQQGDIVLL--KG 435 >gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] Length = 453 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 79/404 (19%), Positives = 146/404 (36%), Gaps = 22/404 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + + ++ V +DSR G +FVA+ G D H F+ +AQGA +V Sbjct: 7 VAQLAGGRLAGADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVR 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++L ++ VD+TR L A+ + ++ +TG++GK++V + Sbjct: 67 QDFALP--------GVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLT 118 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + ++ P+ L + + + + G Sbjct: 119 AILAAHAGRDTVLATAGNFNNDI-------GLPLTLLGLNAGHR---YAVIEMGMNHFGE 168 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++ + N R H+ + A E L ++ A+I ADD ++ Sbjct: 169 IRYLTGLARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGLAEDGVAVINADDPHAA 228 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A LS G ++ + V + D P PGE V N Sbjct: 229 IFRAAAAGRRL--LSFGLGEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVRN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA +A+ + A + L V GR + + I Y +S++ + Sbjct: 287 ALAAAAAALALEVPLAAIAAGLAGFAGVRGRLQRKHAGNGATLIDDTYNANPDSMKAGID 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + + R V+ G G+ +G A + A++T Sbjct: 347 VLLQALAPRWFVMGDIGELGENAAALHAEVGAYARERGLDALLT 390 >gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 452 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSCPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + PI L + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A+G + L L VPGR + + + Y Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G+ A D + T Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 K+ I H ++ I +L +Q ++V KG Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433 >gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] Length = 458 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 164/448 (36%), Gaps = 40/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ +A QGA +VS + Sbjct: 24 VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSQTIAQ---------- 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++ L + ++ VTG+ GK+ + R Sbjct: 74 -PHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKTGTKEALFHALDRVC-------- 124 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + P+ L++ + + + G ++ Sbjct: 125 PGEVHRSVKSYNNHVGVPLSLSRMPRESA---FGVFEMGMNHAGELAALTRQVRPHVAIV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + HI++ T++ AK +FE L A+I D + + +A R+L+ Sbjct: 182 TAIAPAHIEFFGTEEKIAEAKAEIFEG-LEPGGTAVIPYDSPHVATLYAKAEKHAARILT 240 Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ Q + V A VT ++ G + F PGE V NAL A+G Sbjct: 241 FGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSNALAVLATVEALGG 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384 D A L ++ +PGR + GG + Y S+ LK + + R Sbjct: 301 DLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMAATLKQLGREQADRR 360 Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G GDR + + + + D A++ E+ A+ + G+ F Sbjct: 361 IAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLV-----GEE-MDPLAQALGGVMAFD 414 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + AI + D ++V KG Sbjct: 415 HVPDAARAIDLIRNEMRAGDAILV--KG 440 >gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] Length = 466 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 153/427 (35%), Gaps = 30/427 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR ++ G +FVA+ G + D H F+ +A+GA A++VS + + Sbjct: 29 FSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRKVDV---------D 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L A+ +AVTG++GK++V + I + ++ Sbjct: 80 VPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTTVKEMIAAIFAAAVGEGDRLAT 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ P+ + + + + + + G + + Sbjct: 140 GGNLNNDI-------GLPLTVL---RLRAHHKLAVLELGMNHPGETIYLAGIAQPTVAVV 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267 TN R+H ++ + +A + LP + A+ D +V Sbjct: 190 TNAQREHQEFMVSVEAVAHEHASAIAA-LPADGVAVFPVDAESGGAYAAIWRQAAGTRKV 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G V + Q + ++ + F + G V NAL A +A G+ Sbjct: 249 LSFGTDASADVRATVSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNALAATACALAAGV 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D A + + V GR + T + I Y +S+ + + + R++V+ Sbjct: 309 DVAAIQAGIAGFTAVKGRLQVKHTPAGTVVIDDTYNANPDSMRAAIDVLAGFATPRLLVL 368 Query: 388 --FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 G GD+ +G A D T E G F + Sbjct: 369 GDMGEVGDQGPMFHTEIGAYARERGIDALWAT-----GELAPHAVQAYGGGARYFARAED 423 Query: 445 RIEAIRT 451 +A+ Sbjct: 424 LAQALEA 430 >gi|308235256|ref|ZP_07665993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis ATCC 14018] Length = 570 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 86/503 (17%), Positives = 159/503 (31%), Gaps = 76/503 (15%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N ++ DSR I+ + I GN + ++ A G V +Y+ +N Sbjct: 78 NHITYDSRDIKKNTLLF-IKGNFK--PEYLKDADKNGLTTYVAEQSYAD-------YTNA 127 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+V + RK +SL +S +G E + + T K + + S + Sbjct: 128 VGLIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187 Query: 151 ST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S+ ++ LTTP + + +S G+ ++ +E SS R+ G+ Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259 +F N+ DH H T + Y K ++ + A D E + Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLILQDAQNEYVDV 307 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + R +G + + + + + +P VA Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEHYVAI 367 Query: 320 G-----------------------------------------LCIAIGIDSALVLEHLEK 338 + I ++ H + Sbjct: 368 LDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKALHAIE 427 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRD 395 + GR E VDYAH S + ++ + RI +V G GD+ Sbjct: 428 NVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGSTGDKA 487 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT 451 +R + + A D + + T ++ ED I + + NR EAI Sbjct: 488 VDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAEAIEY 547 Query: 452 AIEMLNKQ-------DVLVVAGK 467 ++E K ++++ GK Sbjct: 548 SVEEARKDARENNRLNIILAIGK 570 >gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis DSM 16823] Length = 427 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 68/384 (17%), Positives = 125/384 (32%), Gaps = 35/384 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +D+R IQ G +F + G DG+ F +AI QGA A VV + + Sbjct: 12 TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT------ 65 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VD+T L A + I+ +TG++GK++ + + F G Sbjct: 66 --ILVDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNL 123 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + ++ + + + A+ G + ++ G T Sbjct: 124 NNH----------IGVPLTLLQ---LNTTHEIAVIEMGANKPGDIKELVEIALPTHGIIT 170 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+GR H++ ++ + K LF L +D + + S Sbjct: 171 NIGRAHLEGFKSLEGVIKTKTELFNFLAQNRGHIFANKEDETITSHLPSNTHNHFYNDSK 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G+ + D L GE+ N L A + GI + Sbjct: 231 ELHGEL-----ISLNPFVNMTWSEPNYTSSDIHTNLVGEYNFINFLAAIRIGRFFGISAE 285 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + R + T + Y S+ L + I + I + G Sbjct: 286 NCNKAISDYQPTNNRSQVTKTEKNTLIVDC-YNANPTSMRSALSSFAKIDNHAKIFILGD 344 Query: 391 GGDRDQGKRPIMGKIALDLADIAI 414 MG A + + I Sbjct: 345 M--------REMGDEAPAVHEEVI 360 >gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 72/414 (17%), Positives = 136/414 (32%), Gaps = 42/414 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ + + + + I V DSR + G +FV I G + DGH F Sbjct: 3 MTLSDILTAT--KAVGDVG----ERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFA 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ +GA A++ + TP+L+V +T L A + ++ V Sbjct: 57 AEAVGKGAAAVLADRPL------TGLPDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V ++ +G + ++ P+ + +A + Sbjct: 111 TGSAGKTTVKEL----------TAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDA-- 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G + + N+G H++ A+ L Sbjct: 159 -YWVMELGISRPGEMEPLAAIAEPDVAVIHNVGPAHLEALGDVAGVA-AEKTKLFNFLRP 216 Query: 241 ESPAIIYADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 A+ D E V R + G + + + + + Sbjct: 217 GGVALASMDYPELWEAALAVFPRVRGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLG 276 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + PL G N L AA +G + LE + RF +G Sbjct: 277 ELEMEVETPLTGGHFAENILAAATSAHILGAGEKQIAAGLETAVMPEQRF---YCRRQGC 333 Query: 357 RIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +D Y S+ + G+ +V+ G+ MG A + Sbjct: 334 YTIIDDTYNANPLSMRRAIAAAVETAQGKPLVLV-------LGEMREMGAHAEE 380 >gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 453 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 143/404 (35%), Gaps = 25/404 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++I L I +V++DSR I +F+A+ G + D H F A+ Sbjct: 1 MIPFMLHDIITILRAKVYGI-NPMIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVL 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA AI+V+ + N P L+V++T L + + + ++A+TG+SG Sbjct: 60 AGASAILVNR---------QLPLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++ G G + + TP + Sbjct: 111 KTSVKEMTASILRQCGKVLATQGNLNNDIGVSLTLLRLTP-------------QDDFAII 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + N+ H+ + AK +F +L + Sbjct: 158 ELGANHIGEISSNANLVLPEIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVIL 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R K+ + + T+ P Sbjct: 218 NENSNDWLNWQQGSKCKTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G+ + NAL A+ L IA+G + + V L K+ +PGR + + I Y Sbjct: 278 MLGKHNITNALAASALAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVGKLLIDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 NS+ + + + ++VV G+++ +GK Sbjct: 338 VNSMIAAAQVLSEMPGYLVMVVGDMAELGEKEIKYHQQVGKFIA 381 >gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] Length = 444 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 86/422 (20%), Positives = 157/422 (37%), Gaps = 37/422 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L + L+ + + +S DSR I+ +F+A+ G + DGH ++ Sbjct: 1 MKLSTLASRLKGTLLGADAHY---------KGISVDSRSIKPHELFIALRGKQYDGHHYV 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A GA A VV I ++ P+++V++TRK L A + I+ + Sbjct: 52 GEAQQHGAAAAVVEE---------VIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGL 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ ++ I G + P+ L + Sbjct: 103 TGSCGKTTTREMIRSILAEMGPVLANFKNFN----------NAIGLPLTLLHLTAEHR-- 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + + TN+G H+ + AK +F L + Sbjct: 151 -YAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSILRVAEAKAEIFSG-LAQ 208 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ A D + + K + + F + + + G++ Sbjct: 209 KGVAILNAADNHRDILEKASAQYRRVNFGLTQNCDFYARQIQLDKTGRPTFLLVSSGEEI 268 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G+ V NAL AA + +G++ +++ LEK+ + GR T + I Sbjct: 269 IIRLNLSGQHHVMNALAAAAVARQVGVEFSVIQSGLEKMQPLSGRVINRTTKTGATLIDD 328 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLA-DIAIVT 416 Y +S+ LK + G I+V G + + MG++A L D Sbjct: 329 SYNANPSSVAAALK-LLAHYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYTC 387 Query: 417 DD 418 D Sbjct: 388 GD 389 >gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] Length = 453 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 81/409 (19%), Positives = 151/409 (36%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ Q + I V +DSR ++ +FVA+ G + DGH + Sbjct: 2 MYLSEIAKATGGTLVGQ---------DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +++GA A+++S TP ++V++TR L A+ K + A+ Sbjct: 53 RAVLSEGATAVLLSHDVGA----------TPAVLVEDTRLALGQLAAYWRSKFSIPVAAI 102 Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TG++GK+SV + I + +G + +++ P+ L Sbjct: 103 TGSNGKTSVKEMLAAILRVAAGADDAVLATQGNLNNDI-------GLPLTLL---RLHER 152 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + G + + N H+ + + AK +FE L Sbjct: 153 HRYAVVEMGMNHAGEISYLTRIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEG-LA 211 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+I ADD+++ AG R + + +S + Sbjct: 212 DDGVAVINADDSFAGLW---QSLAGRRRIVRFGLNAGDVTAGYALHSAGCDLQLSTPAGE 268 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 P+PG + NAL A + +++G+ V E L V GR + I Sbjct: 269 RALHLPVPGLHNIRNALAATAVALSMGVSLDAVAEGLAGFAGVKGRLQRKPGRHGALLID 328 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 Y S+ + + + + R++VV G G+ + +G A Sbjct: 329 DTYNANPASMRAAIDVLASHSGKRLLVVGDMGELGENEAALHAELGAYA 377 >gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 466 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 84/467 (17%), Positives = 150/467 (32%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + +++ V DSR ++ G +F A VG + DGH + Q Sbjct: 1 MIALSLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYADQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++ P +VV++ + L A + + ++A+TG Sbjct: 61 AVRAGAVAVLAQRPV-----------GVPAIVVEDVQTALGALARHVVRRLGATLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +R + F G + T +L Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + D G N+G HI ++ AK L E LP E Sbjct: 158 -VLEMGARGIGHISYLTDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEA-LPAEG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ ADD + + R G ++ + + G Sbjct: 216 AAILNADDPLVRAMASRTKAKVILFGESGEADVRAENVRLTDSGQPAFMLHTPSGASEVT 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + AA + + E + R E + Y Sbjct: 276 MRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTIVNDAY 335 Query: 363 AHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417 S+ L+ + + GR V G GD + +G++A+ L + Sbjct: 336 NANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVG 395 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S E G + A+ L DV++V Sbjct: 396 GREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 441 >gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] Length = 456 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 164/465 (35%), Gaps = 36/465 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + + + + + + + I ++D+R ++ +F+ + G +GH F+PQA Sbjct: 1 MIKRTVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G A++ +++VD+T + L A + ++ VTG+ Sbjct: 61 FEKGVSAVLWDR------SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G + L P +A Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S+ G + A TN+G H+ +++ AK+ L ++ Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ +++ + LK++ TI + F Sbjct: 221 LFYFGDEP----LLREKAYTCRTTTYGEGADNDLRLKEIKQGEEGTYFTIDSIDRSFF-- 274 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G V NA+ A I GI L +L V R E V T + + Y Sbjct: 275 IPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S++ ++ I T+ + ++V G GD ++ G + T Sbjct: 335 ASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTYGT 394 Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + R G + +++K +EAIR E D+L+ Sbjct: 395 LGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLL 436 >gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saburreum DSM 3986] Length = 457 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 79/461 (17%), Positives = 152/461 (32%), Gaps = 40/461 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + + + + + DSR +FV +VG K D H F+ G + Sbjct: 10 IAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRVAIS 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S + + I++V++T K L L K ++ VTG+ GK++ Sbjct: 70 SRK------DIFSKPDFNIVLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREMT 123 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + S + +R+T + + S G Sbjct: 124 ALALSDLKVFKTPNNFNSQLGVPVTISRITDEEI---------------GIIELGMSLFG 168 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + + TN+G HI+ T++ + K + + + S + AD+ Sbjct: 169 EMERIAKIVGCDSAIITNIGTAHIENLHTKENIRSEKFHIMDGM-KAGSVVFLNADNDML 227 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 KR + G + + + + T + + + GE QV Sbjct: 228 SNPPKREGIIYKFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVS 287 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NALVA + +D +HL R E + + I Y + +S++ L Sbjct: 288 NALVALAVAHHYNLDIESASKHLSSFRGFSHRQELIELKNL-TVIDDTYNASPDSMKASL 346 Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKI 428 ++ + R I V G + +G+ + D ++ Sbjct: 347 SILKDFRARRKIAVLADMKELGADEVKFHREVGEFISENVKPDAVF---------SVGEL 397 Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468 EI++ F + + EA+ + +E L DV + KG Sbjct: 398 AREIVNCTDIFGKSFDSNEALEKYLLEYLEDGDVCLF--KG 436 >gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] Length = 464 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 136/398 (34%), Gaps = 28/398 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + LS + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIADILSGQLSGNGGVMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGCVAVVVERECEI---------SVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSS----FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K++V +I Q+ + + G + TP Sbjct: 112 KTTVKEMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTP-------------QHK 158 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V + A+ G + + A N+ H++ + + AK ++ L Sbjct: 159 FAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGG 218 Query: 242 SPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A + + + + S + V + T+ + Sbjct: 219 KAIVNQAFYYPQWQKEIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGE 278 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P G V NAL A L +A+G D + LE+ V GR V N I Sbjct: 279 IEINLPYLGAHNVSNALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQHCLLID 338 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 Y +S++ + ++ + RI V D+ Sbjct: 339 DTYNANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376 >gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 464 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 135/394 (34%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G + NAL A L +A+G V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNISNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376 >gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella schoenbuchensis R1] Length = 473 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 92/470 (19%), Positives = 174/470 (37%), Gaps = 41/470 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D L++ ++ + + +S DSR + G IF I GN DGH F QA A+GA Sbjct: 6 DKQTLLSVMNGLSVGCLPETFSGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQAYAKGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV + + P++VV + K L A + I+AVTG+ GK++ Sbjct: 66 VLVV----AQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q G +G + P+ LA+ + + E Sbjct: 122 KEALKQALGTVGRVYANLGSFNNCWGV----------PLTLARMPAD-----SDYGIFEI 166 Query: 190 SSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + D+ R + ++ T++ HI + + + +AK +FE L E A++ Sbjct: 167 GMNHKDEIRPLVKLVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEG-LDDEGVALLN 225 Query: 248 ADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 AD + ++++A G + + QG K++ + + +T+ +D Sbjct: 226 ADSHFFSRLVQKAEQCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIG 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVD 361 PG V N L +C +G D V L + GR + I Sbjct: 286 APGRHIVQNILGVLAVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDES 345 Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAI 414 Y S+ L T GR I + G + ++ R ++ I + A+ Sbjct: 346 YNANPASMRAALDLLAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVF 405 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + K A+ + E + ++ +++ D++++ Sbjct: 406 LVG------KAMKFLADELSTYIKVYYSEYIEELLPLILQEISEGDLIMI 449 >gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 464 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 134/394 (34%), Gaps = 20/394 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + S+D+R +F A+ G D H ++ A+ Sbjct: 1 MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV + + P +VV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ T+ L V Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + + AK ++ L + Sbjct: 163 ELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222 Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A + + + + + S + V + T+ + + Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G V NAL A L +A+G V LE+ V GR V N I Y Sbjct: 283 LPYLGAHNVSNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + RI V D+ Sbjct: 343 ANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376 >gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] Length = 476 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 85/489 (17%), Positives = 162/489 (33%), Gaps = 55/489 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ + + I + R+I DSR ++ ++F+ + G K DGH FI Sbjct: 1 MK--NMTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P +GA A++ P ++V+NT + A+ ++ + Sbjct: 59 PSVFEKGALAVLSEEKLENPAG--------PYILVENTLDAMKKIAADYRRGLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + G + P+ + K Sbjct: 111 TGSVGKTSTKEMIASVLAQKYNVLKTEGNLN----------NEIGLPLTIFKIREE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G TN+G H++ T+ AK F L P Sbjct: 158 QVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGILKAKTESFAHLTPD 217 Query: 241 ESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-N 287 + DD + K A A + K ++ V A+ Sbjct: 218 GIAVLNGDDDKLCDKKVVNGKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLT 277 Query: 288 KQQVTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + I K+ + P+ GE VYNAL A + +G+ + +E + Sbjct: 278 GTKAAIHYPSKETGGEVTMEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQT 337 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGK 398 + GR + N Y S++ + + GR I V G G+ ++ Sbjct: 338 IGGRSNLIHKNGITIIDDC-YNANPVSMKASIDVLSN-APGRKIAVLGDMGELGAEEKQL 395 Query: 399 RPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEM 455 ++G+ A D ++I + ++ + I+ ++ Sbjct: 396 HYMVGEHFAGKGIDALYCV-----GTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKE 450 Query: 456 LNKQDVLVV 464 + D ++V Sbjct: 451 VKSGDTVLV 459 >gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016] gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 474 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 80/470 (17%), Positives = 168/470 (35%), Gaps = 36/470 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ + + D ++ I +++ K +S+DSR +Q G IF+A+ G K +G+ ++ Sbjct: 12 LEHMSFDDIVRAVSGKVILKGKYKGHK--NISTDSRKLQKGDIFIALKGEKFNGNEYVES 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A +GA +V ++ S I T I+ V N L A K I+ VTG Sbjct: 70 ASKKGASICIVD---EVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTG 126 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ + + G + +S V Sbjct: 127 SVGKTTTKDIIAAVLGVKFKVFKTEGNFNNQIGLP-------------HMLFKLDNSYEV 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + + G + + + TN+ R HI +++ NAK+ + + + + Sbjct: 174 AVLEMGMNQRGEIHNMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENT 233 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I D ++ + RV + V + +V + + F Sbjct: 234 LII--NSDNDLLSTLEEKNFTLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERF 291 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L +PG++ + N+L+A + + + E ++ + + R E + Y Sbjct: 292 LINMPGKYNIVNSLLAISCGRLLNMSYDEIREGVKNIKLTSMRMEIIRKKEFTIINDC-Y 350 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 S++ + ++ S R I V G G+ +G A + DI ++ Sbjct: 351 NANPESMKAAIDVLKEFKSNRKIAVLGTMGELGEEAYKMHQEVGMYAGEK-DIDLLIGIG 409 Query: 420 PRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +D E+ G + + + ++ + + D ++V Sbjct: 410 EYKKDFERGFKSTNKKGNFMGFDKYEDLKD------FILKYIERGDTILV 453 >gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 453 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 79/403 (19%), Positives = 145/403 (35%), Gaps = 35/403 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L + E+ + + I EV++D+R AG +F+AI G + D H F+ A+ Sbjct: 4 LTLQQLAEITGGT----LYGSDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVT 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G ++VS ++ +VV +TR L A+ + + I+A+TG+SG Sbjct: 60 AGCSGLLVSQRLPVE---------VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I ++ G + + G + P+ L + Sbjct: 111 KTSVKEMTAAILRQCGETLYTAGNLN----------NDIGVPLTLL---RLKPQHQYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + D ++ NL H++ + AK +F L + I Sbjct: 158 ELGANHQDEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R + V T+ + D P Sbjct: 218 NSDSNDWPHWQSALHGKTVWRFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL A+ L +++G + V + L L VPGR + ++ + Y Sbjct: 278 LPGRHNIANALAASALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSADKLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 S+ + + + R+++V G MG A + Sbjct: 338 VGSMTAAAQVLAEMPGYRVMIV---------GDMAEMGAEAAE 371 >gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 460 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 173/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V ++ I + + G ++ P+ + + Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R AK +L + Sbjct: 165 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E+ +Y D ++ R + + L ++ V + Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNHTKI 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ I Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKIGFTIIND 338 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + + +GK+ + + T Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 398 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E E + E I N+ E ++++ + DV+++ KG Sbjct: 399 ----YGELAEFVAEEARKNYHIGKVQSFDNKAEIAEEVLKIITQNDVVLL--KG 446 >gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2866] Length = 457 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 161/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA+A Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA +VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGAVTVVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 148/475 (31%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + N ++ VD+ + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E K+ A + T ++ + Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ ++ + + GR I V G + + + ++ L D I+ + Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKNSPALHAGLSDTL-DPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + K I + D++V+ KG Sbjct: 389 VYLYGSEMKNLYDALQDKYKPEHLHYYTKDQMDRMIDDLKNDIKSDDIVVL--KG 441 >gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] Length = 455 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 150/474 (31%), Gaps = 52/474 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +F ++ + + + I V+ D R +Q G FVA VG + DGH F+ +A +GA Sbjct: 7 ANFVHVVGGIPVI-HEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 VV+ P + V N + + A + ++ +TG++GK++ Sbjct: 66 SVAVVTEDVKTALG--------PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTT 117 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + + + P+ + + + + +E Sbjct: 118 TKEMVAAVLSA----------IGPCVYTSANQNNELGLPLTILQRDASHRAM-----VLE 162 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIY 247 GL Q + A + LPK+ A++ Sbjct: 163 MGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPKDGMAVLN 222 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + + + +G I V + L Sbjct: 223 GDDPWLRRM--QHRTTARILWYGMSEGCDIRATSVAWSQEGMSFEVDTPHGTATMRIRLL 280 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ V NAL A + +G+ + + L ++ GR V G +D A+ ++ Sbjct: 281 GQHNVMNALAAIAVGQTLGLSLEDIEKGLGRVEAQRGRLRLV---DAGDVTVIDDAYNAS 337 Query: 368 S---LEMILKNIRTITSGRIIVVFGCG---------GDRDQGKRPIMGKIALDLADIAIV 415 + R G + V G RD G+R +A D + Sbjct: 338 PSSVAASLEVLERIARPGHRVAVLGDMLELGEMAVQAHRDVGRR-----VASAGVDRLLC 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E RA G+P E + + L DV++V A +G Sbjct: 393 V----GELAAEMARAAEEAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRG 442 >gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 130/393 (33%), Gaps = 21/393 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAI 64 +I +L + L + E + VS+DSR I G +F A+ G D H ++ +A+ Sbjct: 1 MITLSLSQLASILDAQLLGDGELTVENVSTDSRQSISKG-LFFALKGEHFDAHHYLDKAV 59 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 QG A VV + LVV +TR L A L K +A+TG+S Sbjct: 60 EQGCIAAVVERQTNSP---------IAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSS 110 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+++ I Q+S + + T + LT Sbjct: 111 GKTTIKEMTAAILQQSAVDFDDVLFTHGNFNNDIGVPLTLL---------RLTEQHKFAV 161 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + + N+ H++ + AK ++ L A Sbjct: 162 IELGANHIGEIAYTTALAQPDVALVNNVAAAHLEGFGSLDGVATAKGEIYRG-LTSNGTA 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 II Y ++ + + + + + + + Sbjct: 221 IINLAHNYQQKWQAEIADHSVQYFAYDNPKADYYAENIVFSEQGASFLLHTPKGSIQIHS 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 GE V NAL A L + +G V L V GR + + Y Sbjct: 281 SYLGEHNVSNALAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCENLLLLDDTYNA 340 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +S++ + ++ + R+ VV D Sbjct: 341 NVDSMKSAISVLQKYPAFRVFVVGDMAELGDNT 373 >gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 472 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 41/450 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR + AG +F I G+ DGH F A AQGA +VV+ + T Sbjct: 26 FSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHAYAQGAGVLVVAQNRLDEMKKITA--- 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV + + L A + I+A+TG+ GK++ ++Q + G + Sbjct: 83 -PLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKTTTKEALKQALETVGKVHANLAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207 + P+ LA+ + E + ++ R + + Sbjct: 142 LNNCWGV----------PLTLARM-----PIDSDYGIFEIGMNHKNEIRPLVKLVCPHVV 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H+++ + + +AK +FE L K A++ ADD + ++K+A G + Sbjct: 187 LITRIAAGHMEFFKDLEEVADAKAEIFEG-LDKNGIALLNADDHFFSYLLKKAKQCGVKE 245 Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +K+V + N + + + KD PG+ V N L C + Sbjct: 246 IRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVLAACDTV 305 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILK---NIRT 378 D A V L + + GR I Y S+ L Sbjct: 306 CADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDLLATGPI 365 Query: 379 ITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 GR I + G GD ++ R ++ I + AD+ + ++ + +++ Sbjct: 366 GVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLV-----GKEMGVLASDLSA 420 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + N E + ++ D++++ Sbjct: 421 YVT-VYHAENIEEIVPLVFSEISNGDLIMI 449 >gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] Length = 457 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 160/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK K + T+ + + P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + ++ + RI+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + E + + + L + +VV GKG Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 455 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ E I V+ DSR I G +FV I G + DGH F+ Sbjct: 1 MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + + +L V +T K + A K ++ + Sbjct: 54 GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ + S + + G D Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G V NA+ A + G + L R E+ + + Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404 Y +++ + + + GR I V G R + Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379 >gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] Length = 452 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 95/466 (20%), Positives = 167/466 (35%), Gaps = 36/466 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L ++ + ++ V++D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSQLAGILGG-ELKGDDLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + T + Sbjct: 111 KTSVKEMAAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK ++ LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S V + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGDRKVWRFSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +A G A + L L VPGR V + Y Sbjct: 277 LPGRHNIANALAAASLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 S+ ++ + + R++VV G + +G A D + T Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTG----- 391 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 K+ I ++ I ++ +Q ++ + KG Sbjct: 392 ----KLSQAISEASGVGEHFADKTALIARLKALVEEQQMITILVKG 433 >gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] Length = 470 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 156/451 (34%), Gaps = 42/451 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I +G F AI G++ DGH + A+A GA +VVS A A R Sbjct: 17 ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VVD+ L + I+AVTG+ GK++ ++ + SG + Sbjct: 73 VPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ V + G + + I+ Sbjct: 133 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ ++ + AK +FE L P + +D ++ + S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381 + L L GR + + G +D Y S+ + + Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 382 -GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR I V G + ++ + G + + + + A + + Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGAD---------MAALKESL 410 Query: 437 PGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464 P + R E + + DVL+V Sbjct: 411 PESVHVEYREKTSELTEYVLNSVAPGDVLMV 441 >gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20] gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd KW20] Length = 457 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 89/466 (19%), Positives = 160/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ ++++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK K + T+ + + P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + ++ + RI+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + E + + + L + +VV GKG Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] Length = 468 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 140/390 (35%), Gaps = 19/390 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS DSR I++G IF A+ G + DGH ++ A GA VV+ + + + + Sbjct: 31 SVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWR 90 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 LVV +T + L AS K ++ + G++GK++ +++ +G T Sbjct: 91 YLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKE----------MTAAVLGTTY 140 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + P+ L + + V + + G + + TN Sbjct: 141 KVHMSKGNLNNHLGVPLTLFGLRD---THDLAVVEMGINHPGEMELLTSIARPDFALLTN 197 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G +H+++ A+ L+ + + + + DA R Sbjct: 198 IGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDARLLA-AAREIQNRVDYGPER 256 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 K V + T+ + G V NA+ AA + + Sbjct: 257 DGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNVPLNA 316 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFG 389 + E L L G + G RI+ D Y +S+ M LK + I GR ++VF Sbjct: 317 IAEGLGSLVPADGWKRLEFIEAGGIRIFNDTYNANPDSVTMALKTVCEIPCSGRRVLVFA 376 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVT 416 G+ + MG + L A+ T Sbjct: 377 DMLELGEVSDAEHRRMGALVAQLPFDAVYT 406 >gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759] Length = 495 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 75/469 (15%), Positives = 158/469 (33%), Gaps = 42/469 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ K+ E + + ++ +S+ + G +FV I+G++ DGH FI A+ Sbjct: 43 DITVKNILEATGG--VLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESAL 100 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A + S + + S+ + VD+T K L + ++ ++AVTG+ Sbjct: 101 QV-AAATLTS------EHDNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 153 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + G +++ PI +++ Sbjct: 154 GKTTTREMITAAVSAGMKCFHTEGNYNSVY----------GEPITVSRMTDE---YDAAV 200 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G D + T +G HI+Y + + K+ + + + + Sbjct: 201 LELGIGEPGEMDILTDIAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGT-- 258 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + D +K G G + + Sbjct: 259 LYINGDDPMLYAVKDEIPCKVYTYGCGE-GMDFRATNIRMEDGYSIYDMVHGDDVVTVKV 317 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G V N+LVA + +G+ + E R + + + I Y Sbjct: 318 GVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYNA 375 Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDN 419 + +S++ + + GR +V G GDR +G+ D IV Sbjct: 376 SPDSMKASTDVLCDMKCEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVI--- 432 Query: 420 PRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVV 464 E +KI+ + + + + E AI + ++ +D++++ Sbjct: 433 --GEHAQKIKEALDECDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLL 478 >gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] Length = 455 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 146/475 (30%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + N ++ VD+ + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E K+ + T ++ + Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ ++ + + G I V G + + + ++ L D I+ + Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKSSPALHAGLSDTL-DPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + + I + D++V+ KG Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLKNDIKPDDIVVL--KG 441 >gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 287 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 7/235 (2%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F L+N + IN ++ S+ + G +F +I G EDGH +I +AIA+GA A Sbjct: 5 FDTLMNLSIKHIFGPASQTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 + ++ +T S+ L VD+ RK ++ F+ + E + VTGT+GK++ Sbjct: 65 VF-GTSIEKLRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTT 123 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTH 184 VA++V+ + L + IG T SS + + TTP + L K L ++G Sbjct: 124 VAAYVRSLLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEA 183 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +E SS +DQ R++ I TNL +H++YH+T + Y KM+LF++ Sbjct: 184 AVMEVSSIAIDQQRVENIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKH 238 >gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E] gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E] Length = 461 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 165/469 (35%), Gaps = 33/469 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + ++ L + I VS+D+R +F A+ G K DGH ++ +A+A Sbjct: 1 MIKLNVKKIAQILKAKLIGEETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P LVV +TR L A+ L + +A+TG+ G Sbjct: 61 QGCTAVVVDHPCEI---------DVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I QR G + + P+ L + Sbjct: 112 KTTVKEMTAAILQR------TAGDDEAVLFTEGNFNNDIGVPLTLL---RLTEKHEYAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + N+ H++ + + AK ++ L + AI Sbjct: 163 ELGANHAGEIAYTAHLTMPDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSG-LTPDGVAI 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D Y+ ++ + + G + +K+ + T++ P Sbjct: 222 LNLDSNYAHYWGGDINDREFESFAYDHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELP 281 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+ V NA+ A+ L + +G + LE V GR + ++ + Y Sbjct: 282 YLGKHNVANAVAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTNLLLLDDTYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S++ + + I FG GD + A +VT Sbjct: 342 VASVKSAISVLSDYREAFRIFAFGDMAELGDETISCHQEVADFAKAANLDLVVT-----Y 396 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ G+ + E I ++ +D++++A KG Sbjct: 397 GSESAVVSKACGGVHFSNKEALIASLKEIISH--QLKENEDIVLLA-KG 442 >gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555] gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555] Length = 463 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 76/442 (17%), Positives = 156/442 (35%), Gaps = 34/442 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +S+DSR +Q G IF+A+ G K +G+ ++ A +GA +V ++ S I T Sbjct: 27 KNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKGASICIVD---EVKFESEKISEFT 83 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I+ V N L A K I+ VTG+ GK++ + + G Sbjct: 84 TIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTKDIIAAVLGVKFKVFKTEGNF 143 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +S V + + + G + + + T Sbjct: 144 NNQIGLP-------------HMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAARPDIAVIT 190 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ R HI +++ NAK+ + + + + I D ++ + RV Sbjct: 191 NVLRAHIGNLGSRKNILNAKLEITDFFSKENTLII--NSDNDLLSTLEEKNFTLNRVGLG 248 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + V + +V + + FL +PG++ + N+L+A + + Sbjct: 249 ENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCGRLLNMSYD 308 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E ++ + + R E + Y S++ + ++ S R I V G Sbjct: 309 EIREGVKNIKLTSMRMEIIRKKEFTIINDC-YNANPESMKAAIDVLKEFKSNRKIAVLGT 367 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442 G+ +G A + DI ++ +D E+ G + + Sbjct: 368 MGELGEEAYKMHQEVGMYAGEK-DIDLLIGIGEYKKDFERGFKSTNKKGNFMGFDKYEDL 426 Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464 + ++ + + D ++V Sbjct: 427 KD------FILKYIERGDTILV 442 >gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, putative [Chlamydophila psittaci 6BC] Length = 436 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 91/456 (19%), Positives = 165/456 (36%), Gaps = 39/456 (8%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 LS +KI+ V+ DSR ++ G +F A+ G DGH F+ QA GA A VVS Y Sbjct: 2 LSNVKYPRSGKKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDY 61 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 F ++VV++T + L I+ +TG+ GK++ +F + Sbjct: 62 QGDSF------GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL 115 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 S + +++LT P + +A + + S Q Sbjct: 116 SSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI-----LEMGVSEPKNMQD 162 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 L ++ TN+ H+ Q A+ +L ++ D + M Sbjct: 163 LLSIVEPEVAVITNIADQHVMNFPDQGVQGIAE--EKSHILRNSRVQLLPKDSPWYSYFM 220 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 K++ +A + + + K + V IS D DF P + N L+ Sbjct: 221 KQSVSAEKFSFAFYDETADFYYKAIRK----DSVVISTPEGDIDFAVAFPYKPAYSNLLI 276 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + L + + ++ L + P RFE N I Y ++ L I Sbjct: 277 SLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSVRNGI-QIINDAYNACPEAMIAALDAIP 335 Query: 378 TITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + G++I++ G G+ + ++ AL A I E IR + Sbjct: 336 NPSEGGKVILILGHMAELGNHSEEGHTVVANKALSKASIIFFI-----GEKWLPIRHLLK 390 Query: 434 HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 H + + I ++ + + D++++ KG Sbjct: 391 HDTCEVSFYPS-AQGIEEILKKVVQQGDIVLL--KG 423 >gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC 14672] gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] Length = 476 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 155/478 (32%), Gaps = 48/478 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + ++ V DSR G +FVA VG + DGH F + Sbjct: 1 MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAAR 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A++ S P +VV++ + L A + G+ ++A+TG Sbjct: 61 VVEAGAAAVLASRPV-----------GVPAIVVEDVQAALGALARHVVGRLGTTLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + F G + T +L Sbjct: 110 SAGKTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ G N+G HI ++ A ++ + Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ ADD + + R ++ + + Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESDEADVRAENVRLTDSG-QPSFRLHTPSGAC 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMPADEIARALSEAGSLSRWRMEVTERPDGVTVVN 335 Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ GR V G GD + +G++A+ L Sbjct: 336 DAYNANPESMRAALRALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVRLN 395 Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + V E G + + A+ L DV++V Sbjct: 396 VSKLVAVG----GREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 449 >gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] Length = 462 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 94/468 (20%), Positives = 159/468 (33%), Gaps = 44/468 (9%) Query: 11 FPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ELIN I V +DSR + G FV + G DGH F+ +A +GA+ Sbjct: 5 LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A VVS D + I N VD+T + A + ++AVTG+ GK++ Sbjct: 65 AAVVSK-----DSTVQIPENLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTT 119 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G + + + P I + + +E Sbjct: 120 RELITACLTTLGAITSTSDNNNND--------IGVPQTI-------LQADFSDAALILEM 164 Query: 190 SSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + GL + R TN+G HI +++ AK + L P + I Sbjct: 165 AMRGLGEIRRLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGTVIIPA 224 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--- 304 D + ++ RV + + + + + Sbjct: 225 GDPLLDSILSEKWPGRIIRVGLMPLGEEHTSASYIKKNAVDLLGVLDLNNNSLSVDKEAL 284 Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 PL G N ++A + + +GI + + K + G +D Sbjct: 285 TLPLEGMHNAVNFMLAIAVALELGISLSNMNNLHVKTPCG-----RNSCFTYGNLTVLDE 339 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416 Y + S++ L + T GR V G GD ++ + A+DL+ D IV Sbjct: 340 SYNSSPESVKASLDLLVT-KPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVV 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D E+ E + A + +P F EA+ +L D L++ Sbjct: 399 SD---GEEAEAMVA-VGKQLPNFSIFSQPEEALPYLQSILKPGDNLLL 442 >gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] Length = 358 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 13/243 (5%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K + + + ++ + ++ +S DSR ++ G F A+ G DG FI A+A+G Sbjct: 19 AKSILQCLVSIEPIAVRGADVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKG 78 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125 A ++ +++ + V + R ++ A+ + + ++ + VTGT G Sbjct: 79 AVTVIHEKPLPA------YQAHICYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEG 132 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 K+S F+ Q+ + +G + S A TTP I + + L+ + G Sbjct: 133 KTSTVDFIWQLLRLAGKKAGFSSTVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGC 192 Query: 183 THVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + VEASSHGL RL ++ AG F N+ ++H+++H T + Y K LF L Sbjct: 193 EYAVVEASSHGLSPRTARLLHVRFDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTH 252 Query: 241 ESP 243 Sbjct: 253 AHK 255 >gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] Length = 455 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 90/465 (19%), Positives = 170/465 (36%), Gaps = 36/465 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ F E++ + K N VS+D+R I IF+A+ G+ + + +I +A Sbjct: 2 ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA +V ++ ++ NT +++V NTRK L A K ++ +TG+ Sbjct: 60 SKKGANLCIVDEIKFNEN---DLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S G + I L + L + Sbjct: 117 TGKTSTKDLTAAALSSKFKVFKTQGNFNNE--------------IGLPLMIFNLDNTYDI 162 Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V S + HRL + + TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSI 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + +D + + + + +G + N + T+ K+ F Sbjct: 223 LIVNNEND----LLKDISSDDYKVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ + N+L+A + I+ + E ++ L V R + V Y Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKKFTIVDDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +S++ + + TIT R I V G G + + A ++T Sbjct: 338 NASPDSMKAAIDVMNTITGKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITV-- 395 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E E + F + A +NK D+++V Sbjct: 396 --GEFNEAYKEGFNKNSKQFETIED---AAEFTTNNINKDDIILV 435 >gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 451 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 151/467 (32%), Gaps = 42/467 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + + L L P + I + +D+R +Q G IF+A+ G K DGH F+ Sbjct: 1 MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +GA A +V + P++ V NT A G+ ++ V Sbjct: 61 EMAITRGAVAAIVD--------YTYNYPDLPVIKVSNTLNAYQELAKWWRGQFGIPVIGV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + G G +N + P + + Sbjct: 113 TGSVGKTTTKELIAAVLGTRGKVHKTHGN--------FNNEIGVPKTLLELSQGDDFA-- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + G K G TN+G HI+ + + +P Sbjct: 163 ---VIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGS-EQAIAEAKCELLAEMPN 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +S A++ D+ K+ + L VE Sbjct: 219 DSVAVLNYDNPLLMATAKQVWSGEVISYGFSGGDIQGKLVDYQ----------KVEVGGM 268 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G N L A + +G+D +LE + + GR + + Sbjct: 269 TLPLPLAGVHNGSNFLAALAVAKVLGVDW-KLLEAGINVTMPQGRSQSWKLPRDIMILDE 327 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y ++ L+ + R I V G G+R +G+ L D +V Sbjct: 328 TYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSTKLHQQVGETVKKLNLDGLLVL 387 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D P D E I GIP N + + + D L+ Sbjct: 388 VDGP---DAETIVTS-AQGIP-CERCHNHSDLVSLLKTYVQPGDRLL 429 >gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] Length = 459 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 80/408 (19%), Positives = 156/408 (38%), Gaps = 33/408 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I EL +L+ + + I+ VSSDSR + + +FVA+ G+ DGH F A+ Sbjct: 1 MIRVSLAELATRLNGQLIGD-DLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + + +VV N+++ + + + + +A+TG++G Sbjct: 60 AGANALLVERE---------LPIDAAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV + I + + G + I RL + + + + + Sbjct: 111 KTSVKEMIATILSQQHRVLYTAGNFNNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYT 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + S + N+ H++ + + A + A Sbjct: 171 SGLVKPSVAM--------------VNNVASAHLEGFGSLEGVAKA-KSEIFNHVTVGGTA 215 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDF 300 +I ADDA++ +++ + + V + + + + ++ + Sbjct: 216 VINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVH 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G QV NAL A +C+A+G+ A + + L +L V GR R I Sbjct: 276 RVELPLAGRHQVSNALAATSICLALGLSLAHICQGLSQLKPVKGRM-LPSVLGRVTVIDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 Y S+ + ++ I R +V+ G GD +G +A Sbjct: 335 SYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGALA 382 >gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 92/448 (20%), Positives = 152/448 (33%), Gaps = 38/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I G F AI G++ DGH + A+A GA ++VS A A R Sbjct: 26 ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMAMANGASLLIVSEA----RLPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG + Sbjct: 82 VPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA V + G + + I+ Sbjct: 142 FNNHWGV----------PLTLA---RMPEDTDYGVFEVGMNHPGEIRPLVAMIRPDVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE L P + +D ++ + S Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGAD 308 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMIL---KNIRTITSG 382 +E L L GR + GG + Y S+ + G Sbjct: 309 MQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALLAASEPTGRG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439 R I V G MG+ A D+A+ + A + +P Sbjct: 369 RRIAVLGDML--------EMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPES 420 Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464 + R E + + DVL+V Sbjct: 421 VHVEYRENTSELTDYVLNSVAPGDVLMV 448 >gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 472 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 126/381 (33%), Gaps = 29/381 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK +++ + + + V DSR ++ G +FV + G DGH Sbjct: 1 MK-----AIKLMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHD 55 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 +I QAI GA A + S A I++VD+T + A+ ++ Sbjct: 56 YIQQAIKNGAVATLWSKEA-----QAAPADQIAIVLVDDTLVAMQALANYYRNSLNPKVI 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG++GK++ + + G P L + + Sbjct: 111 GITGSNGKTTTKDMTANVLKAKYKVHKTEGN----------YNNEIGLPYTLLQMPAD-- 158 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S G + + T +G H+++ ++ AK+ + + L Sbjct: 159 -TQVVVCEMGMSDFGEIEVLSKIAQPDIAVITLIGESHLEFLGSRANIAKAKLEILKGLK 217 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + + G R S G + + Sbjct: 218 EDGLFIYPANE----PLLQEAGQALGDRARSFGLDNTADFYAYDLKEDKNKTYFHTNIDD 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P+ G + V NA++A + + + + L + + R E++ ++ + Sbjct: 274 QVLCSIPVMGAYNVGNAMIALTVAQELKVPIEQAIFQLSQFKLTKNRLEWLTASNGASIL 333 Query: 359 YVDYAHTSNSLEMILKNIRTI 379 Y + S++ +LK+ + Sbjct: 334 NDAYNASPTSIKAVLKSFSQV 354 >gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 453 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 83/462 (17%), Positives = 157/462 (33%), Gaps = 45/462 (9%) Query: 12 PELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L L++ P +R I +++D+R+++ G +FVA+ G DGH F+ +A+ GA A Sbjct: 8 AQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIA 67 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 VV ++ + + P+L V++T K A + ++AVTG+ GK++ Sbjct: 68 AVVDRSWESEGL------DLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTK 121 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + + + + + P L + S + + Sbjct: 122 ELI----------AAVLTTKGNVLKTQLNYNNEIGVPKTLLE---LSESHHYAVIEMGMR 168 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + G + TN+G HI +++A A +P +S AI+ +D+ Sbjct: 169 ASGEIAFLTQIARPTIAVITNVGTAHIGRLGSREAIAQA-KCELLAEMPNDSIAILNSDN 227 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 A + + L TIS++ + P Sbjct: 228 ALLMATAAKVWQGETLAYGLEKGNLCPELID--------DRTISIDSINLPLPLPGRHNA 279 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Y A +A + + + ++ R+E Y S+ Sbjct: 280 VNYLAALAVAKVLGVSWEPLKGGLSVDLPSGRAKRYELANDIVILDET---YNAGLESMI 336 Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPE 426 LK + R I V G G+R +G+ A +L D + D E+ Sbjct: 337 AALKLLADTPGKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILAD---FEEAS 393 Query: 427 KIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463 I G+P + R + E + D ++ Sbjct: 394 AIATG-AAGLPFVELGDITQVDAREMMAKRLQEFVKAGDRIL 434 >gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus pseudintermedius ED99] Length = 454 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 81/468 (17%), Positives = 164/468 (35%), Gaps = 34/468 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ K E I+ Q+ + +I V+ DSRHIQ G +F+ G DGH + QA+ Sbjct: 3 NITLKQLAEWID--CDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + +D + T +N P++ V+NT L A ++AVTG++ Sbjct: 61 NDGAGA-----TFFQRDSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMLENVLSGKFRVQKTQGN----YNNEIGMPLTILELNEDTEVSILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L + Sbjct: 172 EIELLSNIA---------QPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K V + + + + ++ D + Sbjct: 223 Y-----DGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTI 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE + NA +A + +G+ + + L L + R + + I Y Sbjct: 278 PILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGAMVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + G I+V G G++ + +G + + T Sbjct: 338 SPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYT----F 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E I + + I + + +R ++ + V++V A +G Sbjct: 393 GEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRG 440 >gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] Length = 470 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 145/376 (38%), Gaps = 26/376 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTIT 380 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHMN 365 >gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 85/464 (18%), Positives = 153/464 (32%), Gaps = 38/464 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L ++ + + +N V D+R + G +FVAI G + DGH FIP A Sbjct: 18 NLEALTLIQVAQAVRGELRNPADLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAF 77 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A V ++ P ++V +TR+ L A ++ VTG+ Sbjct: 78 ESGAAAAVSDREIE---------TDRPYILVKDTREALLDLARCYRRAFDGLVVGVTGSV 128 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + + G + A T S+ Sbjct: 129 GKTTTKEMIAAVLSAGYKTLKTQGNLN----NAIGLPRTIFE---------LDSTYEAAV 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S+ G G TN+G H++ T++ AK+ + E + P Sbjct: 176 IEMGMSALGEISLLTRTALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLV 235 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I +D + R + + + I L Sbjct: 236 INGDNDLLQTVQLDR----PVLTCGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLL 291 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P GE V NAL + G++ A + L R + T + I Y Sbjct: 292 PAIGEHNVLNALFGFAVGRFAGMEDAAIATALGTYTPSGMR-QNTRTVNGVMLIEDCYNA 350 Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 + +S+ L ++ ++ GR I V G G Q G++A A+ Sbjct: 351 SPDSMRAALTTLQQLSCAGRKIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGAL 410 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLV 463 E + GIP + +++ ++ + D ++ Sbjct: 411 SRETAKH-----GEGIPHVEWFDD-KQSLAQSLSGFVQPGDAVI 448 >gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] Length = 453 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 82/412 (19%), Positives = 154/412 (37%), Gaps = 28/412 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ + + +++V++D+R + AG +F+A+ G + D H F+ +A+A Sbjct: 1 MITLTLQKLAD-LTGGKLFGGDLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS ++ + +TR L A + + ++A+TG+SG Sbjct: 60 AGASALLVSKHVTVAVPQVVVA---------DTRIALGQLAGWVRQQSTARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + P+ L +S V Sbjct: 111 KTSVKEMTAAILRECGETLYTAGNLN----------NDIGVPLTLL---RLNASHQYAVV 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + NL H++ + AK +F+ L + + Sbjct: 158 ELGANHQGEIAYTTEITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPINGTAIL 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R S V + + P Sbjct: 218 NADSNDWPHWQHSLHSKTVWRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++ + + + L L VPGR V + Y Sbjct: 278 LPGRHNIANALAAAALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAENKLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 S+ + + + R++VV G GD + +G+ A LA D Sbjct: 338 VGSMTAAAQVLSEMPGYRVMVVGDMGELGDEAEECHREVGE-AARLAGIDKV 388 >gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosospira multiformis ATCC 25196] gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 150/382 (39%), Gaps = 9/382 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + VS+DSR + G +FVA+VG DGH FI QA +GA +V D Sbjct: 5 KIDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEY-- 62 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V NTR L A+ + ++AVTG++GK++V + I +R+ + + Sbjct: 63 --GIPLIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPE 120 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + L + + + G + K Sbjct: 121 EMRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSV 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN G HI + +A AK +FE L ++ A+I ADD +++ + + Sbjct: 181 ALITNAGDAHIQGLGSVEAVARAKGEIFEG-LDQQGIAVINADDPHNRLWREL--AGNRQ 237 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ G + K + Q+T+ + + +PGE V NAL AA + +A+G Sbjct: 238 IIDFGLKSKAKVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVG 297 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + L V GR + I Y +S+ L + +++V Sbjct: 298 VSLKTIASGLSTFGGVKGRMQRKCGVRGATLIDDCYNANPDSVRAALAVLARAEGKKVLV 357 Query: 387 V--FGCGGDRDQGKRPIMGKIA 406 + G GD+ + +G A Sbjct: 358 LGDMGELGDKGREFHEQIGDEA 379 >gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] Length = 448 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 141/386 (36%), Gaps = 26/386 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + VS+D+R + G +FVA+ G DGH F+ QA +GA A ++ Sbjct: 14 LQGEDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQ------- 66 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 TI + P + V + R L A+ + ++AVTG++GK++V + + +G Sbjct: 67 --TIEDSLPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASVLGGAGS 124 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + P+ L + + + S G + Sbjct: 125 VLATQGNLN----------NDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLV--- 171 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN G H+D + A + + A++ ADD + A Sbjct: 172 RPQVALITNAGPAHLDGFGDLKGVARA-KGEIFQGVNPGGVAVLNADDPHFSYWRDLAGE 230 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + Q + + A + T+ LPG V NAL A+ + Sbjct: 231 LPVIGFGL-TQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVA 289 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 IA+G+D + L L +PGR + + Y SL+ L+ + Sbjct: 290 IALGLDRDQISAALAALPSIPGRLQIRRGAGGMRLLDDTYNANPASLKAALELLAEFPGE 349 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406 R +V+ F G+ +MGK A Sbjct: 350 RFLVLGDFAELGEEAAPLHRMMGKQA 375 >gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 68/475 (14%), Positives = 146/475 (30%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + N ++ VD+ + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + P + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L + + + + + + L + Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +E K+ + T ++ + Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ ++ + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++ ++ + + G I V G + + + ++ L D I+ + Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKNSPALHAGLSDTL-DPQIINE 388 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + + I + D++V+ KG Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLKNDIKPDDIVVL--KG 441 >gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 90/471 (19%), Positives = 172/471 (36%), Gaps = 26/471 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 K+++++ + + E ++ + DSR +F+AI+G DGH +I Sbjct: 5 KIKEVLEATRGQ--KSNGRLVIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIK 62 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A G +VS + D + I+ VDNT + A K ++ +T Sbjct: 63 SAYDLGCRTFMVSQELDILDQL----DGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGIT 118 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ V + + + P+ + S Sbjct: 119 GSVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQFGV----------PLTIFNLDSS---YE 165 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + D ++ +N+G HI++ +Q+ F AKM + + Sbjct: 166 CAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHLGSQEGIFKAKMEISDYFSEDS 225 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D+ SK ++ + I LK + + NK + +E K+ + Sbjct: 226 CLIVNGDDEYLSKLRAEKDAISYSLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEE 285 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F P GE VYNA+ A + + +G++ + + L R + T V Sbjct: 286 FSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFVATGDRQNIINTGKYLVINDV- 344 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S+ LK + R + + G GD ++ +G ++ +D+ I Sbjct: 345 YNASPDSMIASLKVLALNKDRRKVAILGDCLEMGDYEEEGHRRVGLQSVRRSDVIITQGK 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 R E E + + E I +L QD ++V A +G Sbjct: 405 AARFIGIE--AQEHGFDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRG 453 >gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 445 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 163/467 (34%), Gaps = 52/467 (11%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L ++ ++ Q+S P VS+D+R +Q G +FVA+VG K DGH ++ Sbjct: 4 QLTAILGENLRRSPQQISPEPA-------TGVSTDTRDLQPGNVFVALVGEKFDGHDYVD 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA GA A++ S + ++ P +V++T + + + ++ +T Sbjct: 57 QAHQAGAIALITSRP---------LETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGIT 107 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK+S + I G + + TP Sbjct: 108 GSVGKTSTKELIAGILGTQGKVLKTEANFNNEIGVPKTLLNLTPD-------------HD 154 Query: 182 VTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + G + RL I + G TN+G HI +++A A E +PK Sbjct: 155 FAVIEMAMRGPG-EIARLAEIAQPTIGIITNVGTAHIGRLGSREAIAKA-KCELLEFMPK 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +S A++ AD+ + V+ D Sbjct: 213 DSVAMLNADNELLMATAATVWSGETLSYGFSQGDLTGEYIAPD----------QVKVADQ 262 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PL G+ N L A G+ +G L L + GR + + + + Sbjct: 263 VFPVPLAGQHNALNYLAALGVMQVLGFGW-QGLTTEISLAMPKGRSQRIVLPNDIVLLDE 321 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416 Y S+ L ++ R I V G G+ + +G+ A L D V Sbjct: 322 TYNAGLESMLAALDLLKQTPGDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVL 381 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+P + + I + G+P + + I + D L+ Sbjct: 382 VDDP---EAQAIADGAL-GVPS-LCFPDHRSLIEHLRANMQPGDRLL 423 >gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] Length = 476 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 91/480 (18%), Positives = 160/480 (33%), Gaps = 50/480 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F+AI G++ DGH ++ A+ GA +V +D + + Sbjct: 27 ITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAALEAGASLALV-----AEDSLGDLPDD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VVD+ + + + I+AVTG+ GK+ ++ SG + Sbjct: 82 GRYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTGTKEALRLALAPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + G + ++ Sbjct: 142 FNNHWGV----------PLTLARMPAD---TDFGVFEIGMNHAGEITPLVQMVRPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRV 267 T + HI++ ++ + AK L + AI+ D+ + Sbjct: 189 TTVEAVHIEFFESVEKIAQAKA-EIFNGLEPDGVAILNRDNKQYDLLRFLAATAAVRNVQ 247 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + HLK A + V S+ G+D + PG V N+L +G Sbjct: 248 TFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLTAVADLGA 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTIT---S 381 D L + GR E + G I Y S+ + T S Sbjct: 308 DLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLAQATLGGS 367 Query: 382 GRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I V G D DQ + G I D + A + +P Sbjct: 368 GRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPH---------MAALWDKLP 418 Query: 438 GFIEKGNRIEA---IRTAIEMLNKQDVLVVAGKGHETVH-----IVTNGEKKMSVDCDII 489 ++ +R EA I ++ + DV+++ KG E + D + Sbjct: 419 DDVKAHHREEAKDLIELLLKDVQPGDVVMI--KGSLGTRMGPLVEALKKEYPPADDIEAA 476 >gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 138/392 (35%), Gaps = 30/392 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ + +I+ + +S+D+R I+ G +F+A+ G K DGH F+ +A Sbjct: 1 MLKWNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAF 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122 +GA A VVS N P+++V +T K L AS ++ +TG Sbjct: 61 LKGAVAAVVSEDKYR---------NFPLIIVQDTLKALHNMASYYIRNILVNAKVITITG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ + + G+S G +N + P I L Sbjct: 112 SVGKTTTKDMLNTVLLHYGVSHVNEGNL--------NNNIGLPFTI-----LKAPEDCQY 158 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G + TN+ H++ + AK+ + + + Sbjct: 159 LILEIGMSRAGEIKELSKISNPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGT 218 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + D + + N L+ + + G+ + Sbjct: 219 LVL--NKDNEHYDYLLSNANRNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNC 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIY 359 P+ GE Y+ALV + ++ +D + + LE V GR G I Sbjct: 277 NLPVKGEHFAYSALVVTAVLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLIN 336 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 Y S++ ++ + T ++ R + + G Sbjct: 337 DSYNANPTSMKAAIRTLGTYSNLRKVALLGDM 368 >gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] Length = 497 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 101/493 (20%), Positives = 164/493 (33%), Gaps = 49/493 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +L+Y P +I Q P W +I V +DSR + G +FVA+ G + DGH F+ Sbjct: 3 RLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLA 62 Query: 62 QAIAQGAEAIVVSSA---------------------YSLQDFSATIRSNTPILVVDNTRK 100 + +GA A +VS Q + ++ VD+ Sbjct: 63 DVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLF 122 Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 L A ++ +TG+ GK+S V +C R + S + ++ Sbjct: 123 ALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRT--------LKSQRSFNS 174 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHID 218 +T P+ + + +E + R + G TN+G H++ Sbjct: 175 EVTLPATL-------LGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLE 227 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278 + +A NAK L E L + D + M A Sbjct: 228 RLGSIEAIANAKAELPESLPADGWCIL--NADDHRVAAMASRTAARVLTYGYAPNADVRL 285 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 L V ++T+ EG+ PL G Y AL A + +G+D + E L + Sbjct: 286 LDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE 345 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRD 395 R V I Y S L+ + T GR I V G G Sbjct: 346 -PGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAE-TKGRRIAVLGEMLELGAAS 403 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 +G A +AD+ + + A + + N AI Sbjct: 404 VEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLNRY 461 Query: 456 LNKQDVLVVAGKG 468 + D L++ KG Sbjct: 462 IQPGDHLLI--KG 472 >gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 83/411 (20%), Positives = 156/411 (37%), Gaps = 41/411 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L + +LI + I+ VSSDSR + + +FVA+ G DGH F Sbjct: 6 LSELATRLKGQLIGD---------DLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQA 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++V + N L+V+N++K + + + + +A+TG Sbjct: 57 AVDAGANALLVERE---------LPINATQLIVNNSQKAMGEIGAYVREQVAPTCVALTG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 ++GK+SV + I + + G + I RL + + + + + Sbjct: 108 SNGKTSVKEMIATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEI 167 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 S+ S + N+ H++ + + A + Sbjct: 168 DYTSSLVKPSVAM--------------VNNVASAHLEGFGSLEGVAKA-KSEIFNHISTG 212 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEG 297 A+I ADDA++ +++ + + V + + + + ++ + Sbjct: 213 GTAVINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDA 272 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G QV NAL A +CIA+G+ L+ + L L V GR Sbjct: 273 EVHRVELPLAGRHQVSNALAATSICIALGLSLPLICQGLSLLQPVKGRMLPSQLGRV-TV 331 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 I Y S+ + ++ I R +V+ G GD +G++A Sbjct: 332 IDDSYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGELA 382 >gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes str. Scott A] Length = 470 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 145/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] Length = 459 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 99/474 (20%), Positives = 186/474 (39%), Gaps = 38/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL +D E N + + RE K++ +S+D+R+I +F+A+ G K DGH F+ Sbjct: 1 MKL-DLTVEDILEATNGV-LIKGDIRE-KVDSISTDTRNINEDEVFIALKGEKFDGHDFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +G + I++S +++ N ++ V +T K L A+ K ++ V Sbjct: 58 KDAILKGVKGIIISREIAVEG-------NIFVIRVQDTLKALQDIANYYRRKLKTKVIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + + ++ G + +S +N + P I L Sbjct: 111 TGSSGKTTTKNLIGKLLSIVGKT--------YVSRENFNNEIGVPLSI-----LDAEEDV 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G + G TN+G HI +++A AK +FE + + Sbjct: 158 DFLVLEMAMRNKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEH-IKQ 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ DD +S + ++ + + + ++ +GKD Sbjct: 217 DGVAILNNDDPFSMRIYEKLKIKKYTFGFDERSDLRGEIVEKNEENYLLKINF-PDGKDI 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ N L++ + I +S LE + R + I Sbjct: 276 KLSLPIYPLNIYRNLLLSLLVLWVISPESVYSLEKDFYFDLPKQRLNLKRKENGLVIIDD 335 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQ-GKRPIMGKIALDLADIAIV 415 Y +S+ ++ + + SGR IV+ G GD G R ++ ++ D+AI Sbjct: 336 TYNANPDSMRTAIEYLDLLKSSGRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIF 395 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 P + + E I++ ++ L D ++V KG Sbjct: 396 --YGPEMRKALDTYQNLDK--KRIYWSKDPEE-IKSILKNSLCAGDTILV--KG 442 >gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 73/415 (17%), Positives = 145/415 (34%), Gaps = 33/415 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L E+ N + + + +DSR +Q G +FV + G + DGH F Sbjct: 1 MQL------TLHEIANATGAVGDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + +A ++GA AI+ + + P+L+V +T L A ++A Sbjct: 55 VDEAASKGASAIIAQQPLF------DLSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVA 108 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG++GK+S + + R G ++ +NRL P I LS+ Sbjct: 109 VTGSAGKTSTKECIAGVLGRRGQAAKSYKN--------WNNRLGVPLNI-----LSFSGE 155 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + S G I TN+ H++ K+ L + L Sbjct: 156 EEFWVLEAGISEPGEMAALASIIAPDVAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLTH 215 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + + S+ + + + + +S +G Sbjct: 216 NGTLVLSVDYPELSQRAASAVCPKTYFSVQAEKAPYWCEP--IQDPEVYGRFQLSCDGVR 273 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +F P ++ N AA + +G++ ++ L+ + R + + T G I Sbjct: 274 TEFDLPWAADYMAENLAAAACVGHRLGLEVEEIVAGLQTAELPEHRGQLL-TLPGGIVID 332 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLA 410 Y +S++ ++ R +V+ G + +G++ +A Sbjct: 333 DAYNANPHSMQRAIRAAARRAGERPLVLVLGEMAELGPDAEAAHTQLGRVVGAVA 387 >gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 75/451 (16%), Positives = 153/451 (33%), Gaps = 33/451 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 Q+ + I V+ DSR I+ +F+ G DGH F+ QA+ GA A + + Sbjct: 17 IDSQYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDID 76 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D PI+ VD+T L A ++ VTG++GK++ ++ + Sbjct: 77 DNVKG-----PIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTE 131 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + LT + L +S L +E S+ + Sbjct: 132 FKVKKTQGN----YNNEIGLPLTILE-LDLDTEISILEMGMSGFHEIELLSNIAE----- 181 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 TN+G H+ +++ AK + L + + + +++ Sbjct: 182 ---PDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIY-----DGDEPLLEPH 233 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + K + H++ + + P+ G + NA +A Sbjct: 234 VKKIKHAKCLSVGLKQDNALVCEVEHSENDGIAFSINGNEHYKLPILGIHNMKNAAIAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G+ + ++ + + R E T+ I Y + S++ + + + Sbjct: 294 IGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTLSQM- 352 Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I+V G+ + +G ++T +D + I + Sbjct: 353 EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLLT----YGKDAKYISDIGGQFVD 408 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ + + I L D ++V KG Sbjct: 409 HVEYFIDKQQLTQYLINNLVANDKVLV--KG 437 >gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 460 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 146/378 (38%), Gaps = 24/378 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I+ +++D+R I +F+A++G D H+F+ +AI++GA A+++ ++ Sbjct: 28 ISIHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCYPKNV----- 82 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V NT L AS + + ++A+TG+SGK+SV I + G + Sbjct: 83 --IPQIIVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGNTISTF 140 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + P+ L + S + + A+ ++ K Sbjct: 141 QNLN----------NNIGVPLTLL---NLNKSHKYAILELGANYPKDIEYTTKITKPNIA 187 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H+ ++ + A+ + L +++ IY D+ K+ + Sbjct: 188 LINNIYHSHLAGFKS--LFGVAQAKQEIFLGLRKNGIAIYNKDSNYWSKWKKNLLTQKII 245 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + I + + + I + PL G + NAL AA + I+I I Sbjct: 246 NFSIKKNSTIFASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINI 305 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 ++ L L ++ R + + N I Y + S+ + +K + I+ ++ V Sbjct: 306 PLEIIKIGLSSLPILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENISGYKLFVA 365 Query: 388 --FGCGGDRDQGKRPIMG 403 G D I+G Sbjct: 366 GDMLELGKNDVLYHKIIG 383 >gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] Length = 472 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 174/473 (36%), Gaps = 33/473 (6%) Query: 6 LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I+K + + ++ Q I V +DSR IQ G +FV IVG K DGH F Sbjct: 1 MIHKSLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +A GA A + + P+++V++T L A+ + ++ +TG+ Sbjct: 61 LASGAGAAFWQRDH-------QPVPDLPLILVEDTLTALQSLAAAYLSETSAKVVGITGS 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++V V + + + G +N + P + L+ + Sbjct: 114 NGKTTVKDMVSALLETTYKVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 160 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S + + TN+G H+ +++ AK+ + + P Sbjct: 161 VLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSREEIARAKLEIISGMKPGGLL 220 Query: 244 AIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + G + G Q H + + S Sbjct: 221 IYHGDEPLIDQVLAEESTVKPEGLNTFTFGNQETNDDYPTGLMFHARGIIFTSNRHAGEG 280 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F PL G V NAL A + +GI + L + R E V T + Sbjct: 281 FSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFANLKLSSMRIEAVETPFGVTVLNDA 340 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416 Y + +++ + + + + I V G G R+ +G D AD+ Sbjct: 341 YNSSPTAVKAAVDVLGDMKGYRKRIAVLGDMLELGQREGEFHAEIGDYLSPDNADLVF-- 398 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P S + RA++ + ++ + I + +E ++++D+++V A +G Sbjct: 399 TYGPLSVHTAE-RAKLRFPDGAVLSFTDKEKLIASVLEHVSEKDIVLVKASRG 450 >gi|240147080|ref|ZP_04745681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257200757|gb|EEU99041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 100 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457 MG+ A LAD I+T DNPR EDPE I +I GI G +I +R A+ A + Sbjct: 1 MGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAR 60 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + D++V+AGKGHE + G + D +++++ Sbjct: 61 EGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 94 >gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 162/473 (34%), Gaps = 45/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L L+ + + VS+DSR IQ G +F+A+ G + DGH ++ Sbjct: 5 MRLSELQLPLSGRLVG---------ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V+ P LVV +TR L + + A+ Sbjct: 56 AEVAAKGAVAALVAREVEGAP--------LPQLVVADTRLALGRLGALNREAFKGPVAAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK+SV + I + + + +++ +P+ L + + Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNNDL-------GAPLTLLELSAEHR-- 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + AS G + + ++ TN G H+ + A + L Sbjct: 159 -SAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQA-KGEILDGLSA 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299 A++ DD +R + + ++ + Sbjct: 217 TGTAVLNRDDKAYPIWAERVAGKRIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGN 276 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G V NAL AA A+GI + V+ L+ L V GR + I Sbjct: 277 LRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGRAVAQMLANGVRLID 336 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIV 415 Y S+ + + + +GR I+V G G+ +QG R +G A D Sbjct: 337 DSYNANPASICAAIDVLASF-AGRTILVLGDMGELGEWAEQGHR-DVGAYAAGKVDTLYA 394 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + G ++ I + +++ KG Sbjct: 395 VGP--------LMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILI--KG 437 >gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] Length = 457 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE + NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNIKNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] Length = 483 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 16/384 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 + L + + VS+D+R I+AG +++A+ G K DG F QAI GA A Sbjct: 4 LAQAAKVLHGHIKGPTDARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATA 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +++++ S + S + + IL+V +TR L A+ K ++A+TG++GK++V Sbjct: 64 VLMNAD-SFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVK 122 Query: 131 SFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + +G + ++ P+ L + + + + Sbjct: 123 EMLASVLRSAAGSDDAVLATKGNFNNDIGM-------PLTLLQLNAQHR---YAVIEMGM 172 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G + N H++ + +A +AK +F L AII AD Sbjct: 173 NHPGEIDYLTRIACPNVALINNASGAHLEGMGSVEAVAHAKGEIFSG-LQPGGSAIINAD 231 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D ++ R +L G G + ++ + DF +PGE Sbjct: 232 DEFAPLW--RCLAGANSLLEFGLSGHSDVVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGE 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 NAL IA+ + ++ L K V GR + I Y SL Sbjct: 290 HNARNALAVTAAAIALNLSLESIVAGLSKFSGVAGRLQRKPAREGAVLIDDTYNANPASL 349 Query: 370 EMILKNIRTITSGRIIVVFGCGGD 393 + + + SG+ ++V G G+ Sbjct: 350 KAAI-AVLAAMSGQRVLVLGDMGE 372 >gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 452 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 163/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+K+ + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKKVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLGTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I I L D ++V KG Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437 >gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella denitrificans OS217] gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella denitrificans OS217] Length = 457 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 86/408 (21%), Positives = 151/408 (37%), Gaps = 31/408 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L +L+ + I VS+DSR I A +FVA+ G + D H F AI Sbjct: 1 MIELTLDALAQKLNAKHLG-ENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATAIE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA+A++V +L + P L+V N++K + + + +A+TG++G Sbjct: 60 NGAKALLVERELAL---------DIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV + I + + G + I RL+ + + + + Sbjct: 111 KTSVKEMLASILSQGHQVLYTAGNFNNEIGVPLTLLRLSQADEYGVFELGANHKGEIDYT 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ L N+G H++ + + A L + A Sbjct: 171 SSLVRPRVAL--------------VNNIGSAHLEGFGSIEGIAEA-KSEIFNHLSADGVA 215 Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 +I ADDA+ + + +A TI +G+ Sbjct: 216 VINADDAFCELMKTKAKAFKQLSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAV 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G QV NAL A+ +C+A+GI ++ L +L V GR + I Y Sbjct: 276 QLPLAGIHQVSNALAASAMCLALGISLTDIVSGLARLAPVKGRMQPHTLGRL-LVIDDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 +S+ + ++ +V+ G GD +G+ A + Sbjct: 335 NANPSSVSAAIDWLKNRDGFCCLVLGDLGELGDNAAHLHAQVGQQAKE 382 >gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 466 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 76/439 (17%), Positives = 148/439 (33%), Gaps = 42/439 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++D+R+++ G IF+A+ G DGH + AI +GA A++ + + Sbjct: 30 VYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRD------QGYHLQD 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L VD+T + A + ++AVTG++GK++ + + + Sbjct: 84 IPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELI----------AAVLST 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 I + P L + S + + L + G Sbjct: 134 QGNILKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIALL---TQIARPTIGVI 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI ++ A AK L ++ + + + Sbjct: 191 TNVGTAHIGLLGSEDAIAKAKCELLAQMPDTSMAILNHDNQRLMDTAATVWQGETLTFGL 250 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + + + + PLPGE N L A + + ID Sbjct: 251 NGGDVQGKLIDLFRLMVDGITFPL-----------PLPGEHNALNYLAALAVAKHLQIDW 299 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + L + + GR + + + Y ++ L + R I + G Sbjct: 300 TPLRKGL-SVQMSGGRSQRYELPNDIVILDETYNAGFEAMIAALHLLAQTPGKRHIAILG 358 Query: 390 CG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 GD + +G+ A L D +T + + E I I +P + Sbjct: 359 SMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKD---REAEAITRGISA-LPSEGFAED- 413 Query: 446 IEA-IRTAIEMLNKQDVLV 463 +A ++ E + D L+ Sbjct: 414 -DALVQHLTEFVQPGDRLL 431 >gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga petrophila RKU-1] gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga petrophila RKU-1] Length = 426 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 80/448 (17%), Positives = 150/448 (33%), Gaps = 55/448 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+ ++ G +FVA+ G + DGH FI +A+ GA A++ D I Sbjct: 9 FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------I 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V+++ L+ A G ++ +TG+SGK++ + + + G Sbjct: 60 FLVESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P I L+ + + + + AS G H N+ Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ T++ + + + A+ DD ++R + L G Sbjct: 167 GNAHLEFFGTRERI-METKMEIIKHSKENATAVTLFDDPD----LRREVPCYRKTLFFGK 221 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 +G LK F +AA LC+ + + Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRALGETVD 280 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L L VPGRF + Y + + + ++ + R VV Sbjct: 281 IFDLASLKTVPGRFNVREKKDV-LIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMKE 339 Query: 391 GGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAEIIH 434 G+R + +G+ L + I+ D DPEKI ++ Sbjct: 340 LGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSD-----DPEKIAKDLAS 394 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQ 459 + + K +R I +EM K+ Sbjct: 395 RVTEGDVVLFKASRAVRIEKVLEMFEKE 422 >gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] Length = 462 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 80/470 (17%), Positives = 158/470 (33%), Gaps = 36/470 (7%) Query: 6 LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + W +++I V D+R + +FV ++GN DGH FI +A Sbjct: 1 MISLTIKEIAAAVGALNDTSMWSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILKA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A + S SL+D + ++ P++ V++T K L A K ++ +TG+ Sbjct: 60 IENGARASLWSK--SLKDLPFEVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGS 117 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + G + I L + + Sbjct: 118 NGKTTTKDMTDAVLSSQYRVHKTQGNFNNH--------------IGLPITILEMPIDTEV 163 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +H + L + + + + +A L + Sbjct: 164 VILEMGMNHAGEIKVLSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGLKENGV 223 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302 I ++ + +R + L L + Q + + D Sbjct: 224 LIYPGEEP---LLQERVTFLTDKQLKTFGTAAENDLYPLNIDAQMNQTSFTTNETPDMTI 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G + V NAL A I +G+ L K + R E++ + + Y Sbjct: 281 SLPVLGTYNVNNALAALMAGIVLGVPIQKSAPKLAKFQLTKNRTEWLVGINGSRILNDAY 340 Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTD 417 +++ +L N T G+ IV+ G + + + I L I+ Sbjct: 341 NANPTAMKAVLDNFSTFENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKKVIL-- 398 Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464 E+ + + F G++ I+ A E + D +++ Sbjct: 399 ---YGEEMSVLYESLQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLI 445 >gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] Length = 457 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 427 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 85/434 (19%), Positives = 161/434 (37%), Gaps = 41/434 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+ ++ G +FVA+ G + DGH FI +A+ +GA A++ A D I Sbjct: 9 FVLNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDR---------I 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V NT + L+ A P+ I+ +TG++GK++ + ++ +R G Sbjct: 60 VLVKNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGN--- 116 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P I L+ + + + + A+ G H N+ Sbjct: 117 -----MNTEYGLPLSI-----LNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNV 166 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ ++++ AK+ + + + + D + K+ VL G Sbjct: 167 GSAHLEFFKSRENIMEAKLEIVKHSKKDSAVVTFFDDGD----LRKKVPVLRENVLFFGT 222 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 +G + L+ N + G F P + +AA LC+ + + Sbjct: 223 KGGDVVLEDWWYYENSTISEYRMFGSSFTIKLPGF-WNRGQLLNLAASLCVMKVLGEKVD 281 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389 + L L VPGRF G RI D Y + + +M ++ + + VV Sbjct: 282 VLELSNLKAVPGRFNVK--EVEGVRIIDDTYNASPEAFQMAIEALLKFPGRKFAVVGAMK 339 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 G+ + ++GK L D V P + I +E + E Sbjct: 340 ELGEESKKFHEMLGKQLDAL-DGVYVFSTEP---EAGWI-----KTRKKVLETDSAEEIA 390 Query: 450 RTAIEMLNKQDVLV 463 R + K D ++ Sbjct: 391 RDLYTRVRKGDTVL 404 >gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] Length = 463 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 82/448 (18%), Positives = 164/448 (36%), Gaps = 43/448 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV AY P+ Sbjct: 26 ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVDEAY------VPTADCGPL 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A+ ++A+TG++GK++ + + G + + Sbjct: 80 VAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + +S G + TN+ Sbjct: 140 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 186 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ ++ + AK+ +F + + A++ D Y ++ A + R++S G Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 244 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ +T+ G++ Y+ + A + A ID Sbjct: 245 VGAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVGRAFSIDLTQA 304 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386 +E+ + GR + T +G I Y S+ ++N+ + R + Sbjct: 305 RGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364 Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440 + G + G R ++ +I D+ I A +++ Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVG--------SHILALYDVLPQHLSGG 416 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA+ ++ D ++V KG Sbjct: 417 HFADHGEALAHLERIIKPGDGVLV--KG 442 >gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] Length = 473 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 91/475 (19%), Positives = 176/475 (37%), Gaps = 36/475 (7%) Query: 6 LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I+K + + ++ Q I V +DSR IQ G +FV IVG K DGH F+ Sbjct: 1 MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +A GA A + + ++ P+++V++T K L A+ + ++ +TG+ Sbjct: 61 LASGAGAAFWQRDH------QPVPADLPLILVEDTLKALQSLAAVYLSESRAKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++V V + + + G +N + P + L+ + Sbjct: 115 NGKTTVKDMVSALLETTYNVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S + + + TN+G H+ +++ AK+ + + P Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLL 221 Query: 244 AIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + G R + G Q H + + S Sbjct: 222 IYHGDEPLIRQVLAEEETVKPEGLRTYTFGNQDTNDDYPTGLMFHARGIIFTSRLHAGEG 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F PL G V NAL A + +GI + L + R E V T + Sbjct: 282 FSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDA 341 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416 Y + +++ + + + R I V G G R++ +G D AD+ Sbjct: 342 YNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVF-- 399 Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P S + P + ++ + I +E + ++D+++V A +G Sbjct: 400 TYGPLS---LHTANKAKARFPEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRG 451 >gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM] gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus acidophilus ATCC 4796] Length = 455 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 63/417 (15%), Positives = 134/417 (32%), Gaps = 34/417 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L + I V+ DSR I G +FV + G + DGH F+ Sbjct: 1 MKMQ------MAEIAKALDKTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI+ GA A + + + ++ VD+ + A K ++ + Sbjct: 54 AGAISNGASATLWKKGHPNK------PEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTVLEMKP-------------NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H + + T +G HI++ ++ +AKM + + L Sbjct: 155 EILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRED 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +++ + + + T ++ + Sbjct: 215 GEFIYN-----GDEPLLQERAKKLDQAKATFGFEDDDTVHATGFKSYMHHATFTINDSEQ 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NA+ A + G + L R E+ + + Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDVGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 Y ++ ++ + + GR I V G + + + +++ L I Sbjct: 330 IYNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSPKLHAELSDTLDPQII 386 >gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Haemophilus influenzae F3031] gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3031] Length = 457 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida BIRD-1] Length = 455 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 88/470 (18%), Positives = 144/470 (30%), Gaps = 41/470 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L + I + VS DSR + AG +FVA+ G + DGH ++ Sbjct: 2 LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+GA A +V + + P L+V + R L + + ++A+TG Sbjct: 58 VKAKGAVAALVEREVA--------GVDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V + I + GL G + P Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + G+ N E L + Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301 AI+ DD RA + G H + T+ G+ Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARGNPKADFHASDIGRDARGCPSFTLHGAGETVA 275 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GE V NAL AA A+G+ + + L + V GR + I Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDD 418 Y S+ + + SGR ++V G G+ Q +G A D Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAVGS 394 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 N + + + E I +++ KG Sbjct: 395 N--------MAHAVKAFGANGRHFATQAELIDAVSAENASDTTILI--KG 434 >gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] Length = 470 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] Length = 445 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 70/462 (15%), Positives = 137/462 (29%), Gaps = 44/462 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L + +L+ + + +DSR +Q G +FVA+ G + DGH FIPQA++ Sbjct: 2 LTLQTVADLLQAPLQGDPHLLGLPVQALCTDSRRLQPGSVFVALRGERFDGHDFIPQALS 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A++ P V +T A + ++A+TG++G Sbjct: 62 KGAVAVISQRPVEG-----------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + R G + AQ P Sbjct: 111 KTTTKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPE---------------HQFA 155 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E + G + R + A + + A+ Sbjct: 156 VLEMAMRGPGEIRRLAQMARPTHALITHIGTAHIGRLGSREAIAAAKCELLQELGQGIAV 215 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D + L + +V + P Sbjct: 216 LNGEDPLLLATAASLWSGKT---------LTYGLAQGDLRGEWDPQAQTVTVEGLTLPVP 266 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG N + ++G++ + E L+ + GR + Y + Sbjct: 267 LPGRHHALNWMGVLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLAGDVEIWDETYNAS 326 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPR 421 ++ L + R + G G+ +G+ A L + + D P Sbjct: 327 PEAMIAALHLLAQTAGKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLD--PD 384 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 E + + + F E +E ++ + + D L+ Sbjct: 385 GEMQPLVDEKPAAEVERFEEASALVEGLQ---QQVRAGDRLL 423 >gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 466 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 86/478 (17%), Positives = 165/478 (34%), Gaps = 44/478 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I ++ E+ + + + V +DSR I G +FV + G + DGH F Sbjct: 1 MIKRNLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + + P ++VD+T L A + ++ +TG+ Sbjct: 61 LQAGAGACLWALSKGTPPG--------PAVLVDDTLIALQALAKSYLTETGAKVVGITGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V + + G + L P +A Sbjct: 113 NGKTTTKDLVYALLSTTYKVHKTKGNFNNH-IGLPLTILAMPEDTEIA------------ 159 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + + TN+G H+ +++ AK+ + + P Sbjct: 160 VLEMGMSGRGEIELLSKIGEPETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLF 219 Query: 244 AIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + K + + G + + G + + + Q + + Sbjct: 220 IYNGDEPLIPKVLAEPSTVKPEGLQTATFGLRPENDQYPTGILFTDHQTLFTPHGSEGDP 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL GE V NAL A + G+ A + E K+ + R E + S + Sbjct: 280 LELPLLGEHNVSNALAAITVARHYGVGEAAIREGFSKVELTGMRIEVITGRSGITILNDA 339 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + S++ L + + + I V G GD + +G++ T Sbjct: 340 YNASPTSMKAALGVLEHMKGYRKKIAVLGDMLELGDSEADYHREIGEMLTPG------TV 393 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 D + P + I G ++ E IR + +L+ QDV++V A +G Sbjct: 394 DQLFTCGP--LSRHIAEGAKKQLDPNFIHAYTDKSELIRKLVSLLHPQDVVLVKASRG 449 >gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] Length = 459 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 74/465 (15%), Positives = 167/465 (35%), Gaps = 32/465 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++++ E++ + + ++ +S+D+R I+ IF+A+ G + +G+ + Sbjct: 6 LEEIVKAVSGEILIKGNELGWEY-------ISTDTRKIEEKAIFIALKGERFNGNEYTAS 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A +GA +V + I+ T ++ V +T + L A K ++A+TG Sbjct: 59 ASQKGAFICIVD---EVHFKKEEIKDYTTVIKVKDTSEALLDLAKYYKSKLEVKVVAITG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + G +N + P + + Sbjct: 116 STGKTSTKDLTASVLGAKYKVFKTEGN--------FNNEIGLP-----LMIFKLDKTYDI 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S+ G TN+G HI+ +++ AK+ + + Sbjct: 163 AVLEMGMSNFGEIHKMAKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNI 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD ++ + + I+ + I +G + Sbjct: 223 LIVNGEDDLLGNLKEEKYKLIKTGLG----KNHNIYAYDINLNEKSVSFKIFEDGDELQI 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ V N+L+A + + + L R + V + Y Sbjct: 279 DIPVPGKHNVLNSLLAIACGRIFKMSFEEIKNGILDLQTTSMRLDMVEGKKFN-IVDDSY 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418 + +S++ ++ + I S R V G G+ +GK A + + ++ ++ Sbjct: 338 NASPDSMKAAIEVLCNIKSKRKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVLGSF 397 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + +E + +E ++ E I LN +DV++ Sbjct: 398 SKAYIEGYLEGSENKNNRGNILEAKDKEEVINYLDINLNSEDVVL 442 >gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] Length = 452 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 73/466 (15%), Positives = 154/466 (33%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A S+ + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQKGTSIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN----YNNEIGLPLTILELDDDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L + Sbjct: 172 EIEFLSNLA---------QPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K N + + + Sbjct: 223 Y-----DGDEPLLKPHVNEVENAKCISIGVATDNALVCSVDDRDTTGISFTINNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYESGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 81/405 (20%), Positives = 150/405 (37%), Gaps = 23/405 (5%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ + + VS+DSR + AG +FVA+ G + D H F+PQ + AIV Sbjct: 7 ILQSALNGARMTADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVA 66 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + P L+V +TR L A + ++ VTG++GK++V + Sbjct: 67 ET--------VPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMI 118 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I + + + ++ P+ L + + + + + G Sbjct: 119 AAILEAACGVDNYLATRGNFNNDI-------GVPLTL---MRLQKTCKAAVIELGMNHPG 168 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + G N R+H ++ + +A LP + A+ ADD ++ Sbjct: 169 EIAVLSAIAEPTVGLVNNAQREHQEFMASVEAVAQENG-AVLAGLPADGIAVFPADDEFT 227 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 R A +VL+ G+ A + IS + F G V Sbjct: 228 PLW--RQLAAQRKVLTFGFSDDADVRCSYSANAFGSDMEISAGRQQFTVALSAAGVHNVR 285 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A +AIGI + + L+ V GR + + I Y +S+ + Sbjct: 286 NALAAIACALAIGIATDAIARGLQAFAPVSGRLQRKLAANGALVIDDTYNANPDSVRAAI 345 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ RI+V+ G G+ + +G A + ++T Sbjct: 346 DVLAQMSAPRILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLT 390 >gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter metallireducens GS-15] Length = 470 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 92/448 (20%), Positives = 164/448 (36%), Gaps = 38/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+DSR +Q G +FV + G + DGH ++ A +G + ++ + ++ + Sbjct: 25 VEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDRGVQVVLAEHQWLEKN---ELPPG 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + VD+T + L A + ++AVTG++GK++ + I ++G G Sbjct: 82 VSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTTKEMLAAILGQTGPGLKTEGN 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 +N + P L +S + + S+ G + RL I + G Sbjct: 142 L--------NNLIGLP-----QMLLRLDNSHRWAVLEMGMSAFG-EIDRLAEIARPDVGI 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN H++ + + AK LF LP E A+ ADD + + G R + Sbjct: 188 ITNAYPAHLETLGSVEGVARAKGELFLR-LPAEGCAVFNADDP---LIARCPSPDGVRRV 243 Query: 269 SVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S G + + V + Q+ + + + G + NAL AA +G+ Sbjct: 244 SFGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAAAHVLGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IV 386 + + L + RF I Y S+ L +R I +GR + Sbjct: 304 PTETIARGLGEFSPYARRFNLEEVGDV-ILIDDSYNANPASMAAALTTLREIRAGRRAVA 362 Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIE 441 V G G+ + +G +A D V + A + G + Sbjct: 363 VLGDMLELGEGAEEAHRQLGLLAATCVDRLYV-----MGGMAGIVAAGALEGGLADDAVT 417 Query: 442 KGNRIEAI-RTAIEMLNKQDVLVVAGKG 468 +AI D ++V KG Sbjct: 418 VATSHDAIVADLRRTTAAGDFILV--KG 443 >gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] Length = 464 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 28/387 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + +L L + E +S+D+R +F A+ G K D H ++ +AI Sbjct: 1 MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV ++ N P ++V++TR L A L + +A+TG+SG Sbjct: 61 QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K++V +I Q+ + G + TP Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239 V + A+ G + + + A N+ H++ + AK ++ + Sbjct: 159 FAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGG 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + + + KE+ + C K V N + T+ + Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGE 278 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P GE V NAL A L +A+G D V LE+ V GR + I Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV 386 Y +S++ + ++ + RI V Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFV 365 >gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] Length = 458 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 161/473 (34%), Gaps = 45/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L L+ + + VS+DSR IQ G +F+A+ G + DGH ++ Sbjct: 5 MRLSELQLPLSGRLVG---------ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V+ P LVV +TR L + + A+ Sbjct: 56 AEVAAKGAVAALVAREVEGAP--------LPQLVVADTRLALGRLGALNREAFKGPVAAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK+SV + I + + + +++ +P+ L + + Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNNDL-------GAPLTLLELSAEHR-- 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + AS G + + ++ TN G H+ + A + L Sbjct: 159 -SAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQA-KGEILDGLSA 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299 A++ DD +R + + ++ Sbjct: 217 TGTAVLNRDDKACPIWAERVAGKRIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPLGS 276 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L G V NAL AA A+GI + V+ L+ L V GR + I Sbjct: 277 LRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGRAVAQMLANGVRLID 336 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIV 415 Y S+ + + + +GR I+V G G+ +QG R +G A D Sbjct: 337 DSYNANPASICAAIDVLASF-AGRTILVLGDMGELGEWAEQGHR-DVGAYAAGKVDTLYA 394 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + G ++ I + +++ KG Sbjct: 395 VGP--------LMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILI--KG 437 >gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] Length = 455 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 140/385 (36%), Gaps = 28/385 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +I V SDSR I +FVA+ G + DGH F A+ GA A++V+ Sbjct: 19 GPDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P L+V +T+K + + L +A+TG++GK+SV V I + Sbjct: 71 -LPLDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVL 129 Query: 145 FQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + G + I RL + + + + + Sbjct: 130 YTAGNFNNEIGVPLTLLRLEEGDEFGVFELGANHRG---------------EIDYTSSLV 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + N A A L + A+I ADD++++ + + A Sbjct: 175 KPDVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMKEAASEH 234 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ + + +S ++ PL G QV NAL AAG+C+ Sbjct: 235 KQLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAAAGICL 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ + ++ L L V GR I Y S+ + ++ I R Sbjct: 295 TLGLPLSEIVSGLSLLEPVKGRMLPTQLGRV-RVIDDSYNANPASVSAAIDWLQEIDGYR 353 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA 406 +V+ G GD +G++A Sbjct: 354 CLVLGDLGELGDNASLLHTELGELA 378 >gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] Length = 457 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 161/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA+A Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG+ A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGSVAVVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE + NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNIKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + E + + + L + +VV GKG Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] Length = 470 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/375 (19%), Positives = 145/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNIIGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR 15-3] Length = 473 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 98/496 (19%), Positives = 184/496 (37%), Gaps = 54/496 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 LI+ + F + + +S DSR + G +F I G DGH F A AQGA +VV Sbjct: 10 LISAMDGFTVGCLPEVFSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHAYAQGAGVLVV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + ++ P++VV + + L A + I+A+TG+ GK++ + Sbjct: 70 ----AQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +Q + +G + + P+ LA+ + E + Sbjct: 126 KQALETAGKVHANLSSLNNCWGV----------PLTLARM-----PIDSDYGIFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + + T + H+++ + + +AK +FE L K A++ ADD Sbjct: 171 KDEIRPLVKLVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEG-LDKNGIALLNADDH 229 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++K+A G + Q + K+VC + N + + + KD PG+ Sbjct: 230 FFSYLLKKAKQCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQ 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHT 365 V N L C A+G + A V+ L + + GR + I Y Sbjct: 290 HMVQNGLSVLAACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNAN 349 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDD 418 S+ L GR I + G GD ++ R ++ I + AD+ + Sbjct: 350 PASMRAALDLLATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGK 409 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 R + +++ I + E ++ D++++ + Sbjct: 410 EMR-----VLASDLSPHIT-VYHAQDIEEIFPLVFSEISNGDLIMI-----------KSS 452 Query: 479 EKKMSVDCDIIREILG 494 + +I+ EIL Sbjct: 453 HRIYLS--NIVNEILS 466 >gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus bromii L2-63] Length = 450 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 83/469 (17%), Positives = 150/469 (31%), Gaps = 43/469 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK D + + N + + KI V DSR ++ G +F+AI G + DGH FI Sbjct: 1 MK--DFTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + AQGA + A + P +VV +T + K ++ + Sbjct: 59 EKCFAQGAVCALCEKAPE--------NATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + + + + G + P+ L S Sbjct: 111 SGSVGKTSTKEMLYAVLSQKFKTHKTQGNLN----------NELGVPLTLL---SMPEDT 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G + ++ T +G H++ + AK +F+ Sbjct: 158 EAAVIEMGISDFGEMTRLSEMVQPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNAREN 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D +K + + + F + K T+ + + Sbjct: 218 ADFIL--NGDDDKLSTVKTVNGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNI 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P G + V NAL AA +G+ + + V R + T Sbjct: 276 DVEIPAIGTYMVTNALAAAAAGKLLGLTDEEIANGVASYKTVGSRANVINTGKIKIIDDC 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ L + + GR + + G G + G A ++T Sbjct: 336 -YNANPTSVRASLDTLSNL-DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVIT- 392 Query: 418 DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 ++ E+ G G F + I I DV++V Sbjct: 393 -------VGELAKELAKGADGKAFDTIEDAKPEILKTI---KSGDVVLV 431 >gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 455 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 65/392 (16%), Positives = 136/392 (34%), Gaps = 33/392 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R+I+ G +F+A+ G DGH F+ +A +GA A VVS N P Sbjct: 25 NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDKYR---------NLP 75 Query: 92 ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++VV +T K L AS ++A+TG+ GK++ + + + G+S G Sbjct: 76 VIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDGN 135 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + LT + + + + G + Sbjct: 136 LN----NNIGLPLTILKAPE---------NCRYLILEMGMNKAGEIKELSKISNPNIAVI 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ H++ + + A+ +L K + +I D + + + Sbjct: 183 TNIEPVHVENFSS--LFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLLSHVDRDVVSFG 240 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 L + + + + G+ VY+ L + +G++ Sbjct: 241 RSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAVIQNLGLNL 300 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIV 386 + + LE ++ GR G I+ Y + S++ ++ + ++ R + Sbjct: 301 SKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGIYSNRRKVA 360 Query: 387 VFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 + G G++ + + D Sbjct: 361 LLGDMLELGNKSITFHMKLLDSIVKYDVDKVY 392 >gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] Length = 470 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 148/378 (39%), Gaps = 26/378 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ + R L+ G + ++ + + Sbjct: 235 Y-----PHEETLLLGNIDGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ TNS + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTNSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITSG 382 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDSN 367 >gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] Length = 460 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 88/476 (18%), Positives = 168/476 (35%), Gaps = 44/476 (9%) Query: 6 LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L K +L + Q +IN V DSR + G +F+A+ G K D H F+ Sbjct: 4 LTLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDFVADV 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 QGA A++V+ + + P +VV+NTR + A+ + + I+A+TG+ Sbjct: 64 AKQGAGALLVNRRLEI---------DCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK+SV I + G + + G + P+ L Sbjct: 115 SGKTSVKEMTAAILCQRGHTLYTAGNFN----------NDIGVPLTLF---RLTEEHQFA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + A+ G + + + NL H++ + AK +F L + Sbjct: 162 VIELGANHIGEIAYTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGLSSAGTA 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I + ++ + +V + + + + + Sbjct: 222 IINLDSNDWTHWQQGMSEPQAVWRFAVSPVPEADFYATDIQEQPLATSFCLHTPIGNIEV 281 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG+ + NAL A+ L I++G + + L +L V GR + + Y Sbjct: 282 TLPLPGKHNIANALAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEGKIVLDDTY 341 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKI-ALDLADIAI----- 414 S+ + + ++VV G GD+ +G+ A D + Sbjct: 342 NANIGSMIAAANTLSQMPGYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSVGEF 401 Query: 415 ---VTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQ 459 +++ + R + + +P + KG+R A+ + L + Sbjct: 402 SSHISETSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKEN 457 >gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 452 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 74/467 (15%), Positives = 162/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I I L D ++V KG Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437 >gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 132/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 15 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 75 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S+ + + + Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVLARMP 354 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] Length = 463 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 73/381 (19%), Positives = 132/381 (34%), Gaps = 26/381 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+D+R I +G +FVA+ G DGH ++ A GA A VV A Sbjct: 28 FQGVSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKADPSM--------G 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V +T L+ A +A+TG+SGK++V V I + G + G Sbjct: 80 LPQIRVSDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVGNTLATEGN 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + +P + + + AS G H ++ ++ Sbjct: 140 LNNHIGVPLTLFRLSPE-------------HQLGAIELGASGLGEIAHTVNIVRPEVVIL 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ A + P+ ++ +DD +RA +S Sbjct: 187 TNAGQAHLEGFGGYDNVVRA-KGEIIDGAPETGLVVLNSDDPAFDLWRQRAGQRRVAGVS 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGI 327 ++ ++ + + L + + NAL+A +G Sbjct: 246 GRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAARELGA 305 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D+ + L L V GR + + + I Y S++ L + + R+ V+ Sbjct: 306 DNEAIKAGLAALKPVKGRLQMMVLTPKLTVIDDSYNANPASMKAALDVLAARPASRVAVL 365 Query: 388 --FGCGGDRDQGKRPIMGKIA 406 G +G+ A Sbjct: 366 GAMAELGQDSLALHREIGEFA 386 >gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 457 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEISYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL J1-023] Length = 470 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 148/378 (39%), Gaps = 26/378 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V+NT L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ + R L+ G + + I+ D + Sbjct: 235 Y-----PHEENLLLGNVDGDFRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWEPDLEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITSG 382 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDSK 367 >gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes Finland 1988] Length = 466 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 10 LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 69 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 70 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 123 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 124 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 183 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 230 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 231 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 285 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 286 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 345 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 346 SPTALKTVLKTFMHM 360 >gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 471 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 84/409 (20%), Positives = 150/409 (36%), Gaps = 30/409 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L + + ELI I VS+D+R I +F+A+ G DGH FI Sbjct: 6 LTWIAQQVQGELIRSEKSI---AANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKFIDT 62 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A GA A++VS + ++V +T++ L + + +A+TG Sbjct: 63 AAQGGAVAVIVSRKVDTE---------LAQILVSDTKEALGRLGQAIKREVAPKTVAITG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V V I R G G + P+ L + Sbjct: 114 SSGKTTVKEMVAAILSRRGKVLATKGNFN----------NDIGVPLTLL---RLEADHEF 160 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + A+ G + + +K + N H++ + A + L K+ Sbjct: 161 AVVELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSLLGVARA-KSEIFKGLGKDG 219 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI AD + + + + S + + V ++ + Sbjct: 220 LAIFNADSQFYAFWHGKYEHLRNQAFSTKDEADYYAQDVVLGLNGCADFLMVTPLGKVSI 279 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PLPG V NALV+A L I +G + V L+ + V GR + + + + Y Sbjct: 280 SLPLPGLHNVSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTY 339 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 S+ + + + +GR ++V G G+R + +G+ A + Sbjct: 340 NANVASVNAAIDLLGSF-AGRKVLVLGDMAELGERARFYHQQVGEYAKE 387 >gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 83/472 (17%), Positives = 164/472 (34%), Gaps = 42/472 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ ++ N + +++I+ +++DSR I+ +FV IVG + D H FI Sbjct: 1 MK--NLTLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P + +GA A + D++ + VD + + + A + ++ + Sbjct: 59 PDVMTKGALATLSERELPEADYA--------YIQVDASLQAVKDIAEFYLEQLQIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + + Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVFRLRDE---D 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S G K TN+G H++ + AK +F+ + P Sbjct: 158 QIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPN 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D ++ + + + + I + F Sbjct: 218 GHIVL--NGDDDKLITVREYNGVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDAF 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D L P PG VYNAL AA + G+ + +E L + GRF + V Sbjct: 276 DVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIRGRF---KMIETDKFLVV 332 Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAI 414 D Y S++ L + GR + + G G+ + + + + + A D + Sbjct: 333 DDCYNANPMSMKASLDVLHD-GEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACV 391 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 D I P + R + + + K D ++V Sbjct: 392 CVGDL-----AVHIAEAARKANPDFPVYYEKTRESLLEHLNDYVQKGDTILV 438 >gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI18] gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA6140] gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID24-1] gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] Length = 452 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 15 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 75 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S++ + + + Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 354 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes FSL R2-561] Length = 470 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola] Length = 453 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 148/402 (36%), Gaps = 25/402 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + I ++ + ++ I+E+ +++ I G +F+A++G D H+FI AI +G AI+ Sbjct: 7 KTIASITNGQLYGKDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAII 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 I+S+ ++V NT L A+ + + ILA+TG+ GK++V Sbjct: 67 THK---------HIKSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I ++ G + IG + PI L + + + A+ Sbjct: 118 TASILRKYGNTISTIGNLN----------NNIGVPITLLQ---LNKYHKYAVIELGANQP 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + + N+ H+ ++ AK +F L P I + Sbjct: 165 GEISYISNMTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKPNGKVIINLDSHHF 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 SK +N Q + + + P G + Sbjct: 225 SKWKKNIKNNHVIYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNI 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A+ L A+ I ++ L ++ R + + N I Y S+ Sbjct: 285 SNALAASALAFALKIPLNIIQIGLADTPIISRRLQSIILNPDKILIDDTYNSNVASMITA 344 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADI 412 +K + + +I+V+ G+ ++G A +L+DI Sbjct: 345 IKVLEKMPGYKILVIGDMSELGENSFLYHRMIGN-AANLSDI 385 >gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 452 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + P++ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNTLVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTNDLKAHDCVLV--KG 437 >gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 470 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 15 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 75 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S++ + + + Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVLARMP 354 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] Length = 503 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 94/456 (20%), Positives = 156/456 (34%), Gaps = 37/456 (8%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P+ I+ +S D+R ++AG F AI G++ DGH F+ A GA VVS Q Sbjct: 19 PLGDLPAAISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKAGAALHVVSE----QK 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 A R +P+L+VD+ K +S A + I+AVTG+ GK++ ++ G Sbjct: 75 LPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTTKEALRHGLAAEG 134 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + P+ LA + + G + + Sbjct: 135 KVHASAASFNNHWGV----------PLSLA---RLPRDARFAIFEIGMNHPGEIRPLVKL 181 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ T + H+ + + AK +FE L + AI+ ADD + A Sbjct: 182 VRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEG-LVSDGTAILNADDPQCGPLATMAR 240 Query: 262 NAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG G L + ++ G+ G N L Sbjct: 241 KAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAVL 300 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILK- 374 G D V L+ V GR + + + G +D Y S+ L Sbjct: 301 GAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALDV 360 Query: 375 --NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKI 428 R GR I V G GD+ G + + I D+ + D K Sbjct: 361 LSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGD------EMKA 414 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +++ N E + + ++ + DV++V Sbjct: 415 LDDVLESRVRREWHENAGELLESLLKTMRTGDVVMV 450 >gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 468 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 148/451 (32%), Gaps = 47/451 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++D+R++Q G F+A+ GN DGH F+ +AI +GA ++V Y+L + +N Sbjct: 30 ITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNN 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 PIL V+NT K A + +++VTG+ GK++ + + + Sbjct: 90 IPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELI----------AEVLAT 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + L + + + V + G G Sbjct: 140 QGKVMKTEANYNNEIGVAKTLLQLSNE---ENYAVVEMAMRGPGEIAELTHIANPTIGLI 196 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI + +A AK L E+ + Y + + K Sbjct: 197 TNVGTAHIGRLGSVEAIAEAKCELLREMSDSSIAILNYDNQRLIETAAKVWSGETFTYGL 256 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + TI+VEG D P Y A +A + Sbjct: 257 EGGNLQGKLI---------DSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGKNIP 307 Query: 330 ALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 A L + + R + + Y S+ L + R I Sbjct: 308 AKTLFQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPGKRHI 367 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439 V G G++ +G + +L D + D E+ + G F Sbjct: 368 AVLGTMKELGNKSILFHQQVGNVVKNLNIDGLFILAD---FEE----AKAMATGAASLQF 420 Query: 440 IEKGNRIE-------AIRTAIEMLNKQDVLV 463 I+ N A + E L D ++ Sbjct: 421 IKVENITADNAHHNLA-KYLQEFLQPGDRVL 450 >gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2846] Length = 457 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] Length = 463 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 26 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 85 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 86 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 137 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 138 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 187 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 188 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 246 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S++ + + + Sbjct: 306 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 365 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 366 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408 >gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 455 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ L+ E I V+ DSR I G +FV I G + DGH F+ Sbjct: 1 MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + + + + +L V +T K + A K ++ + Sbjct: 54 GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ ++ + S + + G D Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G V NA+ A + G + L R E+ + + Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDGEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404 Y +++ + + + GR I V G R + Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379 >gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] Length = 470 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 145/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP 32953] gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis YPIII] gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis PB1/+] Length = 458 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 153/391 (39%), Gaps = 27/391 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I EV+ D+R + AG +FVA+ G + DGH F AIA GA A++VS + Sbjct: 26 DIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVV +TR L FA+ + + P I+A+TG+SGK+SV I ++ G + Sbjct: 77 LVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYT 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P+ L + + + + A+ G + D + + Sbjct: 137 AGNFN----------NDIGVPLTLLRLTAE---HDFAVIELGANHVGEIAYTTDLSRPES 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 NL H++ + AK +F L + I + + + R Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWR 243 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + V T+ PLPG+ + NAL AA L +++G Sbjct: 244 FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAMSVG 303 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D A V + L +L VPGR V + Y S+ + + + R++V Sbjct: 304 ADLAAVRQGLAQLQAVPGRLFPVPLAEGKLLLDDSYNANVGSMIAAAQVLAEMPGYRVMV 363 Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 V G+ +G+ A LA D Sbjct: 364 VGDMAELGETAADCHRQVGE-AAKLAGVDKV 393 >gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 463 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 81/424 (19%), Positives = 139/424 (32%), Gaps = 32/424 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ Sbjct: 12 MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 65 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 ++ GA A+VVS A L VD+T L A + + Sbjct: 66 GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V + + +R ++ P+ L Sbjct: 118 TGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKH 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G K A N R H+ L Sbjct: 168 RYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCS 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I +DA + + G + + + + + + Sbjct: 228 DGMALIPQEDANMAVF--KTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERT 285 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+PG V+NA AA L +A G+ V E L+ + GR I Sbjct: 286 AVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDD 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415 Y +S++ + + + + R I V G G+ + + M A + A Sbjct: 346 TYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYF 404 Query: 416 TDDN 419 DN Sbjct: 405 VGDN 408 >gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosomonas eutropha C91] gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosomonas eutropha C91] Length = 457 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 154/397 (38%), Gaps = 19/397 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + + VS+DSR ++ G +F+A+ G + DG FI AI +GA A +V Sbjct: 8 ALALHANSNWSGGNPIFTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S+ + +S+ + V++TR A+ ++AVTG++GK++V + Sbjct: 68 STDTVI----VPTKSDFGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMI 123 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I + S + T +++ L + + + + G Sbjct: 124 AAIFRHEFGSGNVLATTGNLNNDIGVP----------QMLLQLNTGHTCAVIEMGMNHAG 173 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + TN G HI++ T +A AK +F L + AII ADDAY+ Sbjct: 174 EIAYLSQLAAPTIAVITNAGTAHIEHLGTTEAIARAKGEIFTG-LGAQGIAIINADDAYA 232 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + R ++L G + + ++ + + + +PG +Y Sbjct: 233 QLW--RQLAGSRQILDFGITNPAAIRAQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA A GI + + E L PGR + + I Y +S++ L Sbjct: 291 NALAAAAAATAAGISTTSIAEGLHNFMGTPGRLQKKVGLYQSILIDDTYNANPDSMQAAL 350 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + + +I+++ G G G +G+ A Sbjct: 351 NVLAEMPGKKILIMGDMGELGTDAAGFHYTIGQQAAK 387 >gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] Length = 470 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes L99] Length = 470 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+ + R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTI 379 + +L+ +LK + Sbjct: 350 SPTALKTVLKTFMHM 364 >gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM 10] gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis FV-1] gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis CO92] gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10] gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CO92] gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D106004] gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D182038] gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 458 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 153/391 (39%), Gaps = 27/391 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I EV+ D+R + AG +FVA+ G + DGH F AIA GA A++VS + Sbjct: 26 DIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVV +TR L FA+ + + P I+A+TG+SGK+SV I ++ G + Sbjct: 77 LVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYT 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P+ L + + + + A+ G + D + + Sbjct: 137 AGNFN----------NDIGVPLTLLRLTAE---HDFAVIELGANHVGEIAYTTDLSRPES 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 NL H++ + AK +F L + I + + + R Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWR 243 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + V T+ PLPG+ + NAL AA L +++G Sbjct: 244 FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAMSVG 303 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D A V + L +L VPGR V + Y S+ + + + R++V Sbjct: 304 ADLAAVRQGLAQLQAVPGRLFPVPLAEGQLLLDDSYNANVGSMIAAAQVLAEMPGYRVMV 363 Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 V G+ +G+ A LA D Sbjct: 364 VGDMAELGETAADCHRQVGE-AAKLAGVDKV 393 >gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 83/416 (19%), Positives = 141/416 (33%), Gaps = 28/416 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ L I P + + VS DSR ++ G +FVAI G + DGH FI A GA Sbjct: 12 TGAEIARALGIAPP-AADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAFDNGAA 70 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VS Y+ + ++ P+ VD+ L + I AVTG+ GK++ Sbjct: 71 GALVSRDYA---PQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKTTT 127 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + +G + + + P+ LA+ + + Sbjct: 128 KEMLRVM----------LGESGPTHASVKSYNNFMGVPLSLARMPAASR---FGVFEIGM 174 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G ++ T + HI++ ++ AK +FE L + AI+ AD Sbjct: 175 NHAGEIVPLAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEG-LEQGGAAILPAD 233 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + + A RV+ G + L VT + + F PG Sbjct: 234 NPHFESLAAFARERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPG 293 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHT 365 NA+ A +G + L + GR RG + +D Y Sbjct: 294 RHLAQNAVAALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNAN 353 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 S+ L + R I V G G + A + Sbjct: 354 PASMHAALDVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVF 409 >gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] Length = 463 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 39/446 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S P+ Sbjct: 26 ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A+ ++A+TG++GK++ + + G + + Sbjct: 80 VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + +S G + TN+ Sbjct: 140 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 186 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ ++ + AK+ +F + + A++ D Y ++ A + R++S G Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 244 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ VT G++ + Y+ + A + A ID Sbjct: 245 VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 304 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386 +E+ + GR + T +G I Y S+ ++N+ + R + Sbjct: 305 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364 Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G + G R ++ +I D+ T + + + + G Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HF 418 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA+ ++ D ++V KG Sbjct: 419 ADHGEALAHLERIIKPGDGVLV--KG 442 >gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] Length = 463 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 21/385 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I EL + S + ++ + +VS+D+R +F A+ G D H ++ QA+ Sbjct: 1 MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P L+V +TR L A L K +A+TG+SG Sbjct: 61 QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q+ + T + LT + + Sbjct: 112 KTTVKEMTASILQKVVQDPDAVLFTQGNFNNDIGVPLTLL---------RFEPKHQFAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +D ++ N+ H++ + + AK +++ L K + Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIM 222 Query: 246 IYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL 303 Y + K ++ +A R+ S + + +++ Q + E + + Sbjct: 223 EYEHSVLWKKYWHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G V NA+ AA L + +G+ + LEK V GR + + Y Sbjct: 283 LPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTYN 342 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVV 387 +SL+ + +R RI V Sbjct: 343 ANVSSLKSAIDVLRQYDKFFRIFAV 367 >gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus 132] gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] Length = 452 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 73/466 (15%), Positives = 161/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437 >gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74] Length = 449 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 132/421 (31%), Gaps = 32/421 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS+D+R I +F+A+ G DG+ F QA+A GA +V A + A+ Sbjct: 19 TGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTD-- 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+V + L A ++ +TG++GK++ + + + G Sbjct: 77 RCLLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNL 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + LT S + S L H L T Sbjct: 137 NNH----IGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGL---------IT 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + K L++ L I + D + + + + Sbjct: 184 NIGKAHLEGFGGIEGVRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTF 243 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + V K+ + LPG + N L A + G+ Sbjct: 244 AEAIFYPAANPDEETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + R + V + Y +S+ ++ + R V+ Sbjct: 304 SPEEANRAIADYNPTNNRSQQVIKG-TNTVLLDAYNANPSSMAAAIQQFAATPAKRKAVI 362 Query: 388 FGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 G GD + + +GK IA D+ I+ + R + +P Sbjct: 363 LGDMYELGDESEAEHAALGKLIAESNFDLVILAGKDMRF---------ALEYLPKAYYFP 413 Query: 444 N 444 + Sbjct: 414 D 414 >gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 457 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 92/472 (19%), Positives = 175/472 (37%), Gaps = 43/472 (9%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A + P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTITS--GRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDN 419 +L+ +LK + S +V GD ++ + + + Sbjct: 338 PTALKTVLKTFMHMNSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFL---- 393 Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTA-IEMLNKQDVLVVAGKG 468 D K +I G + N E++ TA + +N + ++V KG Sbjct: 394 --YGDAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILV--KG 441 >gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] Length = 457 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 71/406 (17%), Positives = 148/406 (36%), Gaps = 25/406 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + Q +++ +++D+R + G +F+A+ G DGH FI +A +GA ++ Sbjct: 4 DWLANVLTTDYQGDNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVI 63 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + +V++TR L + + + +A+TG+ GK++V Sbjct: 64 VDHKVDV---------DIAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEM 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I G G + P+ L + + A+ Sbjct: 115 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 161 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + K N+ H++ + AK +F+ L + AII D + Sbjct: 162 GEIAYTTAMAKPDVAVVCNVAPAHLEGFGSLMGVAKAKGEIFDG-LKENGVAIINCDSEF 220 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 S+ + + + S + + + T+ + K LPG+ + Sbjct: 221 SQYWLDKLEGRNIKRFSTSEKLDIWAEDISLDANARASFTLCTKQKKVPVTLALPGKHNI 280 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+AA L + + + L + V GR + + + Y S++ Sbjct: 281 SNALIAAALTSELDVTLDDIAHALATMGDVKGRVNLIEVSDMLTVVDDTYNANVKSVKAA 340 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + + + RI+ + G G+ + +G+ AL+ + T Sbjct: 341 IDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALEKGIDELFT 386 >gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 450 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 87/462 (18%), Positives = 148/462 (32%), Gaps = 46/462 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + D L L + V +D+R + G +FVA+ G + DGH + QA+A Sbjct: 1 MFEIDTQTLQTLLGAEAEGTLPMSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA ++ + P L V +T + A + ++AVTG++G Sbjct: 61 GGAALVIAERPVA-----------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAG 109 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ ++ + +G G + + T + V Sbjct: 110 KTTTRELIRAVLATAGPVLAPPGNENNDVGVPKLLLQLTG-------------AHRYCVV 156 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + G G TN+G HI + A +A LP A+ Sbjct: 157 EMGMRGPGEIARLARCAAPNVGVITNVGSAHIGRLGSHAAIADA-KCELLAELPCSGIAV 215 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D +R + V + P Sbjct: 216 LNGEDERLLSTARRHWAGPVLTYGLDAGDVMGSFDGVHLHVDGIAFI-----------PP 264 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG N L A + +G++ V E L+ L + GR + I Y Sbjct: 265 LPGRHNHLNFLAALAVARHLGLELLQVRERLKDLQLPTGRSRVIALEGDVQLIDETYNSA 324 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421 S L + + GR I V G G+ + ++G+ LA D +V + Sbjct: 325 PESARAALAWLAGL-PGRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLE---A 380 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 ED E + A +P +R A + + D L+ Sbjct: 381 GEDTEALLAG-AGDLPAVQLADHRAVA-AYLADRVRPGDRLL 420 >gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] Length = 452 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 71/467 (15%), Positives = 160/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G P+ + + + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN----------YNNEIGLPLTVLELDND---TEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I I L D ++V KG Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437 >gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] Length = 465 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 162/415 (39%), Gaps = 28/415 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + + P ++++ V+ DSR ++ ++F+AI G + + H FI Sbjct: 11 MK--NLTLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFI 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P I +GA ++ ++ P ++V++T + L A ++ + Sbjct: 69 PDTIKKGAMCVISHEDLG--------ETDFPYILVESTGQALLDTAKLYRDSFDIKVVGI 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + +G + PI + + Sbjct: 121 TGSVGKTSTKEMIASVLSQKYCVHKTLGNFNNEW----------GLPITIFEM---NEKH 167 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + + G + RL + TN+G H+++ +T++ K ++ +++ Sbjct: 168 QVAVLEMGVNHFG-EMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKT 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S + DD + + L Q ++ + + + + G+ Sbjct: 227 GGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHL-PSGES 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 FD + PLPG V NAL + +G+ A + +E L +PGR + T+ Sbjct: 286 FDCIVPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQTDKIIILDD 345 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 Y S++ L + + GR + V G G+ + + + + DI I Sbjct: 346 C-YNANPISMQASLDVL-NMAIGRKVAVLGDMGELGETGKELHYETGAHAGDIGI 398 >gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] Length = 457 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 148/415 (35%), Gaps = 26/415 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ + ++ I + IN VS+D+R ++ G +FVA+VG + D H F QA+ Sbjct: 3 DVSLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A++V L N +VV++T+ L ++ ++ + +A+TG+ Sbjct: 63 EANASALLVERKLDL---------NITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSC 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V V I Q+ G F G + P+ L ++ Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLL---RSEANDDYAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + +K N+ H++ + A + L + A Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAADDTA 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303 I+ + + S K +C + + Sbjct: 220 IVNLESNGGDFWNDVLADKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVE 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ V NAL AA L I G V L L V GR E + I Y Sbjct: 280 LGIIGQHNVANALAAAALSIQFGASLDEVKNGLANLISVKGRVEVQQLSQNIKLIDDSYN 339 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ K + + R +++ GD +G+ A A ++T Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394 >gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 460 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 72/473 (15%), Positives = 164/473 (34%), Gaps = 38/473 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L + E+++ + +I + DS+ I+ G +FV I+ K DGH ++ Sbjct: 6 NLIQIQLNKLEEVVDGEG-LQESFHNIEIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVK 63 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ GA A + +Y PI+ VD+T L A + N++ +T Sbjct: 64 EAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGIT 117 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++V + I + G ++ P+ + + Sbjct: 118 GSNGKTTVKDIINTILSTTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE--- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E Q R AK +L K+ Sbjct: 165 --FLILEMGMSEKGQIRNLSKIAQPDVAIITMIGQSHLETLGSREEIAKAKLEIIDGLKD 222 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 +Y D ++ + N + ++ + + + Sbjct: 223 EGLCLYNGDE---PLLLKNKNLSSINCKAFGEKYTNDFFPTNVQLDEYGIHFKLNDSNIQ 279 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + PL G+ + NA+V + + + + L ++++ RF+F+ + I Sbjct: 280 YDVPLHGKHNILNAIVGIAIGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDA 339 Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 + + +S++ ++ +T+ + I+V G G + +GK+ + + T Sbjct: 340 WNASPSSMKAAIETFQTLNAYKKKIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT- 398 Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E E + E ++ + ++++ K+D++++ KG Sbjct: 399 ---YGELAEIVAEEARKKYDSGKVQSFNSKAKIAEEVLKVITKKDIVLL--KG 446 >gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] Length = 453 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 88/463 (19%), Positives = 160/463 (34%), Gaps = 41/463 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +S + + + +V +D+R + AG +FVA+VG + D H F+ AIA GA+A++VS Sbjct: 9 LATVSGGKLYGSDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + +TR + + + ++A+TG+SGK+SV Sbjct: 69 KHLPVAVPQVVVA---------DTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILRECGETLYTAGNLNNDFGVPMTLLRLTKD-------------HDYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D + NL H++ + AK +F L + I + + Sbjct: 167 IAYTTDLTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGLPAHGTAIINADSNDLAN 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + R + + T+ D PLPG + N Sbjct: 227 WQPQLVGKTLWRFSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIAN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL AA L +++ + + L KL VPGR V I Y S+ + Sbjct: 287 ALAAAALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLAEHQLLIDDSYNANVGSMTAAAQ 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT-------DDNP-RSE 423 + + R++VV GD + +G+ A D + T DN E Sbjct: 347 VLGDMPGYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISDNSGNGE 406 Query: 424 ---DPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNK 458 + + + + E G+R A+ ++ L + Sbjct: 407 HFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQE 449 >gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 457 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQTKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE + NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNIKNALAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + E + + + L + +VV GKG Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 80/468 (17%), Positives = 163/468 (34%), Gaps = 34/468 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ K E I+ Q+ + +I V+ DSRHIQ G +F+ G DGH + QA+ Sbjct: 3 NITLKQLAEWID--CDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + +D + T +N P++ V+NT L A ++AVTG++ Sbjct: 61 NDGAGA-----TFFQRDSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMLENVLSGKFRVQKTQGN----YNNEIGMPLTILELNEDTEVSILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ + TN+G H+ +++ AK + L + Sbjct: 172 EIELLSNIA---------QPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K V + + + + ++ D + Sbjct: 223 Y-----DGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTI 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + GE + NA +A + +G+ + + L L + R + + I Y Sbjct: 278 SILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGAMVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + G I+V G G++ + +G + + T Sbjct: 338 SPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGSYLENKGIHQLYT----F 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E I + + I + + +R ++ + V++V A +G Sbjct: 393 GEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRG 440 >gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 452 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 15 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 75 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVF--KT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S++ + + + Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 354 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 457 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 454 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 80/467 (17%), Positives = 154/467 (32%), Gaps = 35/467 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ K E I Q+ + KI+ VS DSR+I +FV G DGH F+ QA+ Sbjct: 3 DVTLKQIKEWIP--CEIDDQYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + PI+ VD+T L A ++AVTG++ Sbjct: 61 EDGAGAAFYQNDAKPDHEIEG-----PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + + + G + LT + H Sbjct: 116 GKTTTKDMIESVLKPAFKVKKTQGN----YNNEIGMPLTILQLDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S TN+G H+ +++ AK + L P Sbjct: 172 EIELLSEIA---------HPDIAVITNIGESHMQDLGSREGIARAKFEIVSGLKPGGVFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ++K + ++ + + + + Sbjct: 223 Y-----DGDEPLLKPHVDTLKDTEAISIGLAQDNSVVCSVEQHDAMGIAFTLNTNEHYQI 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ + E++ K+ + R E T+S I Y Sbjct: 278 PILGTHNMRNAAIAISIGKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S++ + + + GR I++ G+ +G D ++T Sbjct: 338 SPTSMKAAIDTLAAM-DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLT----F 392 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ I + ++ E I + +D +++ KG Sbjct: 393 GDEAVHIYENGKANVDEAHHFNHKNELIEFITQHAQAEDEILI--KG 437 >gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] Length = 455 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ F E++ + K N VS+D+R I IFVA+ G+ + + +I +A Sbjct: 2 ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA +V ++ ++ NT +++V+NTRK L A K I+ +TG+ Sbjct: 60 SKKGANLCIVD---EIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S G + I L + L + Sbjct: 117 TGKTSTKDLTAAALGSKFKVFKTQGNFNNE--------------IGLPLMIFNLDNTLDV 162 Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V S + HRL + + TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSI 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + +D + + N + +G + N + T+ ++ F Sbjct: 223 LIVNNEND----LLKDISSNDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ + N+L+A + I+ + + ++ L V R + V Y Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLDIVKGEKFTIVDDC-Y 337 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDD 418 + +S+ + + TI R I V G + K + AD ++T Sbjct: 338 NASPDSMRAAIDVMNTIKGKRKIAVLGTMKELGVDS-YKFHKEVAEYADSKNVDLLITV- 395 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E E + F + E I +NK D+++V Sbjct: 396 ---GEFNEAYKEGFNKTSKQFETIEDAAEFIT---NNINKDDIVLV 435 >gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 463 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS Sbjct: 26 LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 85 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 A L VD+T L A + +TG+ GK++V + + +R Sbjct: 86 LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 137 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ P+ L + + + G Sbjct: 138 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 187 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 K A N R H+ L + A+I +DA + Sbjct: 188 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVF--KT 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + + + + + + + P+PG V+NA AA Sbjct: 246 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A G+ V E L+ + GR I Y +S++ + + + Sbjct: 306 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 365 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + R I V G G+ + + M A + A DN Sbjct: 366 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408 >gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] Length = 468 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 135/411 (32%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR + G +FVA+ G + D H F+ A+GA A +VS + Sbjct: 15 GAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAALVSREGA 74 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++ P L V +TR L A + ++AVTG++GK++V + I Sbjct: 75 --------PASLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ ++ P+ L + + + + + + G Q Sbjct: 127 AAVGIDARLSTAGNFNNDI-------GLPLTLLRLSAAHR---LAVIELGMNHPGETQTL 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 N R+H ++ T +A A ++ D + + Sbjct: 177 AKIAAPTVALVNNAQREHQEFMATVEAV--ALEHASVIHALAPDGVAVFPADDKYAGIWR 234 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + V + + I + G NAL A Sbjct: 235 VAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374 A +A G+ + LE V GR + G + D Y +S+ + Sbjct: 295 AAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + S R++V+ G GD +G A D T D R Sbjct: 355 VLAQQASPRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRD 405 >gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 144/476 (30%), Gaps = 44/476 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E I+ + S DSR I+ G +F A+ G + DGH ++ Sbjct: 1 MKLA---LWRIAEFIHGTGDYRAGAEAL---GYSIDSRTIKPGELFFAVKGERLDGHDYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA A VVS F A +LV D+ L A + ++ V Sbjct: 55 QAALDRGAVAAVVSRE-----FPARFNGTRNLLVADDPLLALHRLAEMVRSLWHHPVVGV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + G + P Sbjct: 110 TGSAGKTTTKECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPE-------------H 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S G + G TN+ H++ + AK L L Sbjct: 157 EIAVIEMGMSHAGEIAALAKLAQPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRG 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D R + + V F + + K + Sbjct: 217 GCAVL--NADDEFVSQFGRDFHGTVLMFGVKRAADFRAENVEMLGAAGSKFDLRFREKGY 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL GE VYNAL A + + GI + L+ L R E V Sbjct: 275 PAEMPLIGEHNVYNALAAVAVGVHHGIAIESAIASLKTLKPADKRGEVVEIAGATVVNDC 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y +L ++ + + + R IV+ G G + GK + D + Sbjct: 335 -YNSNPKALNAMVDALAKMPAQRRIVIAGEMLELGPEGEHLHRDSGKHMKGIVDHLV--- 390 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + ++ G EA + D +++ A +G Sbjct: 391 ------GVRGLAQAMVEGAKSAGVEAEFVATPEEAGDWLAANIRPGDAVLLKASRG 440 >gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces lividans TK24] gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] Length = 471 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 158/471 (33%), Gaps = 39/471 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + ++ V DSR G +FVA VG + DGH F + Sbjct: 1 MITLSLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAAR 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A++ S P +VVD+ + L A + + ++A+TG Sbjct: 61 VVEAGAVAVLGSRPV-----------GVPAIVVDDVQAALGALARHVVRRLGTTLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +R + F G + T +L Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ + G+ N+G HI ++ A ++ + Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ ADD + + R G ++ + ++ Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESGEADVRAENVRLTDTG-QPSFSLHTPSGAS 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVN 335 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL--ADIA 413 Y S + L+ + + GR V G GD + +G++A+ L + + Sbjct: 336 DAYNANPESTKAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLV 395 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 V R + + A+ L DV++V Sbjct: 396 AVGGREARWLQLGAYNE--GSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444 >gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 466 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 33/445 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I+ V DSR I G +FV + G DGH +I +AI GA A + S+ Sbjct: 25 TEIDSVEFDSRLITPGALFVPLKGA-TDGHSYIDKAIENGAVAALWSND------PNEAP 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+ V++T + FA G ++ +TG+SGK++ + Sbjct: 78 VGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTALKVHKTN 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + L P + + + S G + Sbjct: 138 GNYNND-IGLPKTILDMPEDTEV------------IVLEMGMSGAGEISFLSKLAEPDVV 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T +G +HI++ +++ AK+ + + L + + V + + Sbjct: 185 VITMIGENHIEFLGSRENIAKAKLEILDGLKEEGTFIYPG---DEPLIVDQMPTDLKQST 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G + Q + + PL G + V NAL A G+ + G+ Sbjct: 242 LTIGLNDDHDIFAFDVMMDQFQSTFYTNLSPELKMEIPLSGGYNVQNALYALGVAYSFGL 301 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRI 384 V +L + + P R + + Y + ++++ +++N I + Sbjct: 302 SMEQVRPNLAEFSITPDRGSWERGILDTQILNDTYNASPSAMKAVIRNFSAIASKGMSQK 361 Query: 385 IVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I+V G + D+ R I I L+ + PR + E Sbjct: 362 ILVLGDMLELGAFSDELHREIATVIGLNTFKHVFL--YGPRIQPLVDALIEKGMHPDLIT 419 Query: 441 EKGNRIEA-IRTAIEMLNKQDVLVV 464 + EA I +L +D ++V Sbjct: 420 YIESDKEALIEQVKAILQPEDKVLV 444 >gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 473 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 77/418 (18%), Positives = 158/418 (37%), Gaps = 24/418 (5%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D ++ + +E + +D+R G +F+A+ G D H F+ +A+ QGA Sbjct: 5 DLQTIVKVTGAKILSQKETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGAS 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++V +L + ++ IL+V +T K L + + I+ +TG++GK++ Sbjct: 65 GLLVHEENALIE---KLKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 F + S + G + P ++ V + + Sbjct: 122 KEFTAALVGSSMDVHYNKGSFNNHWGVPFTLLQLPP-------------NKDVAIIEMGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YA 248 + G + + T +GR H+++ T + AK ++E + Sbjct: 169 NHAGEITELVHIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDN 228 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPL 306 ++ V R R+L+ + + + + N +++I S+ G+ + Sbjct: 229 TQTHNMYVKARDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQV 288 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G + N + AA + +A+G+ A V L GR + V S I+ Y Sbjct: 289 FGAQNLTNLMAAASVGLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANP 348 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419 +S++ ++ N++ +T GR + VFG G +G + D D+ Sbjct: 349 DSMKALIDNMKLLTVPGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDD 406 >gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] Length = 476 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 39/446 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S P+ Sbjct: 39 ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 92 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A+ ++A+TG++GK++ + + G + + Sbjct: 93 VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 152 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + +S G + TN+ Sbjct: 153 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 199 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ ++ + AK+ +F + + A++ D Y ++ A + R++S G Sbjct: 200 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 257 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ VT G++ + Y+ + A + A ID Sbjct: 258 VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 317 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386 +E+ + GR + T +G I Y S+ ++N+ + R + Sbjct: 318 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 377 Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G + G R ++ +I D+ T + + + + G Sbjct: 378 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HF 431 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA+ ++ D ++V KG Sbjct: 432 ADHGEALAHLERIIKPGDGVLV--KG 455 >gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652] gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CIAT 652] Length = 470 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 155/451 (34%), Gaps = 42/451 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I +G F AI G++ DGH + A+A GA +VVS A A R Sbjct: 17 ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG + Sbjct: 73 VPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ V + G + + I+ Sbjct: 133 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ ++ + AK +FE L + +D ++ + S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381 + L L GR + + G +D Y S+ + + Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 382 -GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR I V G + ++ + G + + + + A + + Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGAD---------MAALKESL 410 Query: 437 PGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464 P + R E + + DVL+V Sbjct: 411 PESVHVEYREKTSELTDYVLNAVAPGDVLMV 441 >gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 148/378 (39%), Gaps = 26/378 (6%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++VDNT L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKDVPNP------PTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + ++ + + Sbjct: 235 Y-----PHEETLLLSNINGDFRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE V+N + A IGI+ + L+K+ R E++ T S + Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKMERSKSRLEWITTKSGARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITSG 382 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDSK 367 >gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] Length = 448 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 82/440 (18%), Positives = 159/440 (36%), Gaps = 47/440 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ L+ + + ++ S +S++I +F+ + G + DGH F Sbjct: 1 MNL------WLSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118 + +A+ GA + + P + V +T L AS + K ++ Sbjct: 55 VEEALQNGAISFISHKEIE--------NVRVPYVKVKDTLAALQGLASYVRDKLKGLTVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G +N + P I L+ Sbjct: 107 GVTGSVGKTSTKEYIFNVLSCKYKTFKNQGNL--------NNHIGLPFSI-----LNMPE 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 154 DTQVAVFEMGMSNFGEISKLSQIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + ++++ Q S E Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + +YN+L A + +GID LV E + + + RFE + S + Sbjct: 267 GYTYFIKSFNFHDIYNSLFAIAIGTILGIDRQLVKEAIRQKERLKRRFEVIKKGSI-TIV 325 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ I Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384 Query: 415 VTDDNPRSEDPEKIRAEIIH 434 T +D I E Sbjct: 385 CT-----GKDAFYIFDEAKK 399 >gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-175] Length = 457 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 144/375 (38%), Gaps = 26/375 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A + P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTIT 380 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHMN 352 >gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 443 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 74/409 (18%), Positives = 144/409 (35%), Gaps = 40/409 (9%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 ++ LS + K+ V+ +SR ++ G +FVA+V + DGH ++ A+ +GA A Sbjct: 5 IKKIGAVLSAVTQGNDQIKVTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDALDRGAAA 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 ++V ++ I P ++V +T L AS + ++A+TG++GK++ Sbjct: 64 VLVDDNHA-------ISEKLPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTK 116 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I +F+ L+ P + V + Sbjct: 117 DMTAAIVSTV-FKTFKTPNNFNNEIGVPMTLLSMPEDTEVL------------VVELGMD 163 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G ++ T +G HI++ +T+ AK+ + A Sbjct: 164 RSGQLTMLSQLVQPDIAIITMIGEAHIEFFKTRANIAKAKLE-----ITNGLKADGVLFI 218 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + ++ +A V + K+ F PL G + Sbjct: 219 PFDEPLLTQAVIMQRVVWFGQNIDAVETASDHT----------NFIYKNTRFAIPLIGGY 268 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 + NAL A I + ID ++ L+ + R E + T I Y ++ Sbjct: 269 NIMNALAAISAGILLHIDLKKAVQALQTFDLTKNRTERLVTARGVILISDVYNSNPTAVA 328 Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415 +L ++ I + VV G G++ +G K+ D + Sbjct: 329 AVLATLKAIPAQHKYVVLGDMLELGEQANELHAGLGQKVLDANVDGVYL 377 >gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC 13032] gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC 13032] Length = 514 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 84/490 (17%), Positives = 161/490 (32%), Gaps = 47/490 (9%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + + ++ V DSR + G +F+A+ G + DGH F Sbjct: 1 MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60 Query: 63 AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112 AI +GA A++ + + I+ + + + + LS A + Sbjct: 61 AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDI 120 Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 H N++A+TG++GK+S F+ + + G + G + T Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLDQDGPTVAPPGSFNNELGLPHTALRCTTD-- 178 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 + A G +H + + N+G H+ +++ Sbjct: 179 -----------TKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQ 227 Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 AK + E A++ ADD + + R + Q K Sbjct: 228 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISL 287 Query: 287 N---KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VV 342 + + T++ + + + GE QV NAL AA + + G+ LV+ LE Sbjct: 288 DAVARASFTLNTKDGSWPVTLQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAAS 347 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCG---GDRD 395 R + I Y +S+ + + SGR V G GD Sbjct: 348 AHRMDVKTRADGVTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDA 407 Query: 396 QGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 +G + +NP + + + A+ Sbjct: 408 SEAHAELGAELAKYNVQELVAVGENP---NCAALAESAASLGVSTHVVSDVDAALELLAG 464 Query: 455 MLNKQDVLVV 464 + + DV++V Sbjct: 465 HIKRDDVVLV 474 >gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] Length = 505 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 90/444 (20%), Positives = 154/444 (34%), Gaps = 28/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G++ DGH F+ A GA VVS A R Sbjct: 28 ITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRAGAALHVVSEK----RLPALGRMQ 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVVD+ L A + I+AVTG+ GK++ ++Q G + Sbjct: 84 APMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTKEALRQGLSACGSVHASVAS 143 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + G + + ++ A Sbjct: 144 FNNHWGV----------PLSLARLPADSR---FAIFEIGMNHPGEIRPLVKLVRPHAAIV 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + +AK +FE + AII ADDA + A AG + Sbjct: 191 TLIAAAHLGHFRDLDEIADAKAEIFEG-IVPGGSAIINADDAKCMRLAAAAKAAGVTNVL 249 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + + + + + ++ +PG N L G G Sbjct: 250 TFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAAHVAGA 309 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNI---RTIT 380 D A V E L + + GR E G Y S+ ++ + + Sbjct: 310 DIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLANAKLSE 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 +GR I V G + + ++A L D I E+ + + + Sbjct: 370 NGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARV-LLVGEEIKPLAEALGDEEIECT 428 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 EA + D ++V Sbjct: 429 THKTPTEAEEQLFSDMRAGDAIMV 452 >gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] Length = 453 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 67/469 (14%), Positives = 152/469 (32%), Gaps = 38/469 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK + KD +++N + + +I ++ DSR ++ G +F+ +G DGH +I Sbjct: 1 MK---YLVKDLEKILNAKKVNIT--SDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA A + S+ I+ V+++ + + A +A+ Sbjct: 56 ESAFEKGAAASLS--------LKDDFVSSNNIIYVNDSYEAIQTLAKHYLDSLNAKTIAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + G +N L P I A S + Sbjct: 108 TGSNGKTTTKDIITSVLSTKYKVHKTQGN--------FNNELGVPLTILAAPEDSEIL-- 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A G ++ TN+G HI++ ++++ AK + + Sbjct: 158 ---VLEMGADGFGQLDFLSKLVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + + + + I L+ ++ +++ + + Sbjct: 215 GYFVY--NGDEVLLKSLVDSSDFNTTSCGENNYNDII-LENYTITRDRIDFKLNISDEQY 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 A I + + + + R + + I Sbjct: 272 FTKLKGKHNLFNIMFATAIASKIG-LTNEEIRKAIENTVEITGMRLQSIPYKEDSLIIND 330 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGK-IALDLADIAIV 415 Y + S++ + + + + G + +G+ I+ DI +V Sbjct: 331 AYNASPTSMKAGVDVVSSFDDFDFKTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLV 390 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E E I +I + + E +K +V+++ Sbjct: 391 IS---VGELAENITKQIKNDKIKTLHFPTTAEVSEYLKNNKHKNEVILL 436 >gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes 220] Length = 457 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A + P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] Length = 464 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 22/386 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I EL + S + ++ + +VS+D+R +F A+ G D H ++ QA+ Sbjct: 1 MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + + P L+V +TR L A L K +A+TG+SG Sbjct: 61 QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q+ + T + P+ L + S + Sbjct: 112 KTTVKEMTASILQKVAQDPDAVLFT------QGNFNNDIGVPLTLLRLESKHK---FAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +D ++ N+ H++ + + AK +++ L + Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIM 222 Query: 246 IYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302 Y + ++ NA R+ SV + + +++ Q T+ + Sbjct: 223 EYEHSVRYQKKYWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKI 282 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P G V NA+ AA L + +G+ + LEK V GR + + Y Sbjct: 283 NLPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTY 342 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVV 387 +SL+ + +R RI V Sbjct: 343 NANVSSLKSAIDVLRQYDKFFRIFAV 368 >gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] Length = 452 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 87/434 (20%), Positives = 153/434 (35%), Gaps = 39/434 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L +LI Q + I +VS+D+R I+ G +FVA+VG + D H F Sbjct: 4 MMLSQLAEYLDGQLIGQ---------DVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A++VS A +TP L+VD+T+ L ++ +A+ Sbjct: 55 SNAVEAGASALLVSKALDC---------STPQLLVDDTKLALGKIGQFVHQLCQTPTVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V V I G F G + +TP Sbjct: 106 TGSCGKTTVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPE-------------D 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + ++ N+ H++ + A + L Sbjct: 153 DFAVIELGANHIGEIAYTTQLVQPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLKP 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKD 299 S AI+ D + + + SV + + + + Sbjct: 212 GSVAIVNLDSHGGEYWQQVLADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGT 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F + G+ V NAL A+ L +G +V L+ L V GR E V + I Sbjct: 272 FSVELGIIGQHNVANALAASALAFELGATIEMVQSGLKHLAKVKGRVESVSLTDKITLID 331 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +++ + + R +++ GD +G+ A ++T Sbjct: 332 DSYNASVPAMKAAADLLSSFGGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT- 390 Query: 418 DNPRSEDPEKIRAE 431 D + I + Sbjct: 391 ---FGADAKAISEQ 401 >gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] Length = 457 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 80/415 (19%), Positives = 146/415 (35%), Gaps = 26/415 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ + ++ I + IN VS+D+R ++ G +FVA+VG + D H F QA+ Sbjct: 3 DVSLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A++V L N +VV++T+ L ++ ++ + +A+TG+ Sbjct: 63 EANASALLVERKLDL---------NITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSC 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V V I Q+ G F G + P+ L ++ Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLL---RSEANDDYAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + +K N+ H++ + A + L A Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSINGVKQA-KGEIFQGLAAGDTA 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303 I+ + + S K + + + Sbjct: 220 IVNLESNGGDFWNDVLADKSVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVE 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ V NAL AA L I G V L L V GR E + I Y Sbjct: 280 LGIIGQHNVANALAAAALSIQFGASLDEVKNGLANLISVKGRVEVQQLSQNIKLIDDSYN 339 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ K + + R +++ GD +G+ A A ++T Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394 >gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium cellulovorans 743B] Length = 395 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 80/416 (19%), Positives = 163/416 (39%), Gaps = 34/416 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++++ LI + + N VS D+R ++ G I++AI G DG+ F+ + Sbjct: 6 LEEVLKATEGNLI-------INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVE 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI +GAE ++ + A + + + I++V+NT+K L A K ++ VTG Sbjct: 59 AINKGAELCIIDKIAYTE---AEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + G +N + P + ++ V Sbjct: 116 STGKTSTKDLIAAALSEKLKVFKTKGN--------FNNEIGLP-----LMIFNLDNTYDV 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S Q D + G TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSDLFEIQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENL 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + D + +A + + + + + + + ++ + F Sbjct: 223 LIVNH--DDQYLSTIDKAEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLN----ESKF 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG+ + NAL+A +G++ L+ + + R + I Y Sbjct: 277 YIPMPGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNKGI-TIINDTY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414 + +S++ ++ ++ + R I V G G+ MG A + + DI I Sbjct: 336 NASPDSMKAAIEVMKNLKGKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILI 391 >gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] Length = 480 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 76/414 (18%), Positives = 144/414 (34%), Gaps = 23/414 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L+ + + VS+DSR + +F A+ G K D H ++ A+ Sbjct: 1 MISLQTKKLAEILNGRLIGDETVTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV A + N P +VV +TR L A L + +A+TG+SG Sbjct: 61 QGNTAVVVEHACEV---------NVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL----------- 174 K++V I Q++ S + + ++ Sbjct: 112 KTTVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLL 171 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + A+ G + ++ N+ H++ + AK ++ Sbjct: 172 RLQPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIY 231 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L ++ A++ +D Y K + S + + + T+ Sbjct: 232 RG-LSEDGIAVVNSDCHYLSLWDKEIAGHRMQSFSATNPEADYWAENIRMTESGSAFTLH 290 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D P G + NAL A L + +G + V LE+ V GR + + Sbjct: 291 SPDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN 350 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + Y +SL+ + ++ + RI+ V G+ + + A Sbjct: 351 LLLLDDTYNANVDSLKSAIGVLKNYEAFRILAVGDMAELGENSRECHRQVANYA 404 >gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] Length = 452 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 90/433 (20%), Positives = 158/433 (36%), Gaps = 37/433 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L + EL+ +R I VS+D+R I AG +FVA+VG + D H F Sbjct: 4 MMLSQIADALDAELVGN---------DRAIESVSTDTRAIDAGALFVALVGERFDAHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ GA A++VS S+ P L+V +T+ L + ++ +A+ Sbjct: 55 AQAVESGAGALLVSRIVE---------SDVPQLLVKDTKLALGQLGALVHQSCQTPTVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V V I ++ G F G + +TP Sbjct: 106 TGSAGKTTVKEMVASIMEQKGRVLFTAGNFNNDIGVPLTLLRSTPE-------------D 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + + +K N+ H++ + AK +++ L P Sbjct: 153 DYAVIEMGANHIGEIAYTTNLVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKPG 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I + A R + F + + T+ D Sbjct: 213 SVAIINLDSNGGEYWHSVLADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + G+ V NAL A L + +G + +V L +L V GR E + N I Sbjct: 273 AIKLGIVGQHNVANALAATALALELGANLEMVQSGLAQLSKVKGRVEVIELNDTIKLIDD 332 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +++ + + T R +++ GD +G+ A ++T Sbjct: 333 SYNASVPAMKAAADLLASFTGIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT-- 390 Query: 419 NPRSEDPEKIRAE 431 D + I E Sbjct: 391 --YGADAKAISDE 401 >gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O46] Length = 452 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNGTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. SR1/5] Length = 462 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 170/481 (35%), Gaps = 54/481 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ ++ N + P + + ++ +++DSR ++ G +FV +VG + D H FI Sbjct: 1 MK--NLTLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + GA A + D P + V ++ + + A + ++ + Sbjct: 59 PQVMEAGALATLSERTLEGADH--------PYIQVGSSLQAVKDIAEFYLEQLDIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + G + P+ + + Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVFRLRDE---D 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + S G + RL I K TN+G H++ + AK +F+ + Sbjct: 158 EIAVLEMGISDFG-EMTRLAKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKR 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ D +K ++ G I ++GK Sbjct: 217 N----IVLNGDDDKLSTVKEYNSMQPVFFGNGENASVTCENVESRGLKGMSCDICLKGKM 272 Query: 300 --------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 F P+PG V NAL AA + G+++ + +E L V GRF + T Sbjct: 273 AENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIET 332 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALD 408 + Y S++ L ++ GR + + G G+ + +G A Sbjct: 333 DKFMIVDDC-YNANPMSMKASLDVLQD-GLGRKVAILGDMGELGTDEAALHEGVGVHAGQ 390 Query: 409 -LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLV 463 D I I + P R + + + ++ L D ++ Sbjct: 391 CRIDACICV-----GPLAAHIAEKASQTNPDLTVI--REKDLESLLKNLNTYVKPGDTIL 443 Query: 464 V 464 V Sbjct: 444 V 444 >gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 452 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces albus J1074] gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] Length = 474 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 93/481 (19%), Positives = 167/481 (34%), Gaps = 57/481 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + P + + V DSR G +F A G + DGH + Sbjct: 1 MIALSLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++ + P LVVD+ + L A + + ++A+TG Sbjct: 61 AVETGAVAVLATRPV-----------GVPALVVDDVERALGALARAVVERLGTTVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V Q+ R + + G +N + P + + Sbjct: 110 SAGKTSTKDLVAQLLTRVAPTVWTPGSL--------NNEIGLP-------LTALRAEADT 154 Query: 183 THVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 H+ +E + G+ R G N+G HI ++ AK L E LP+ Sbjct: 155 RHLVLEMGARGIGHIRYLTGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEA-LPE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ ADD Y +++ R ++ + T+ Sbjct: 214 DGVAILNADDRYVRDMASRTKARVVTFGEAPEADIRAENVRLTENG-RPAFTLHTPSGCG 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 273 DVTMRLYGEHHVSNALAAAAVASELGMPVDEIAQALSEAESLSRWRMEVTERPDGVTIVN 332 Query: 360 VDYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ + + GR V G GD + +G++A+ L Sbjct: 333 DAYNANPESMRAALRALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLN 392 Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463 + + V + + ++ G + + A+ L DV++ Sbjct: 393 VSKLVAV-----GGREAAWL--QMGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVL 445 Query: 464 V 464 V Sbjct: 446 V 446 >gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] Length = 455 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 131/416 (31%), Gaps = 31/416 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L + I + VS DSR + AG +FVA+ G + DGH ++ Sbjct: 2 LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+GA A +V + + P L V + R L + + ++A+TG Sbjct: 58 VKAKGAVAALVEREVA--------DVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V + I + GL G + P Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + G+ N E L + Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301 AI+ DD RA + H + T+ G+ Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVA 275 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GE V NAL AA A+G+ + + L + V GR + I Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414 Y S+ + + SGR ++V G G+ Q +G A D Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390 >gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus aureus subsp. aureus ST398] Length = 451 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 164/467 (35%), Gaps = 35/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQKGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + IS + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTG------ISFTINNEHYDL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ ++ ++L+ + + R E + I Y Sbjct: 277 PILGKHNMKNATIAIAVGHELGLTYNIIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 337 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 393 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 394 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 436 >gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 438 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 69/450 (15%), Positives = 154/450 (34%), Gaps = 31/450 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + + ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + Sbjct: 3 LKINFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID 62 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + + P++ V++T L A ++AVTG++GK++ ++ + Sbjct: 63 ENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTE 117 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G +N + P I L + ++ + + S + + Sbjct: 118 FKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISILEMGMSGFHEIEFLSN 164 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + TN+G H+ +++ AK + L + + V + Sbjct: 165 LAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVE 224 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + + + + P+ G+ + NA +A Sbjct: 225 NAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDLPILGKHNMKNATIAIA 279 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G+ + ++L+ + + R E + I Y + S+ + + T+T Sbjct: 280 VGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT 339 Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 RI+++ G+ + +G + + T N + + I + Sbjct: 340 GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN----EAKYIYDSGQQHVEK 395 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ + I L D ++V KG Sbjct: 396 AQHFNSKDDMIEVLTSDLKAHDRILV--KG 423 >gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] Length = 455 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 82/414 (19%), Positives = 152/414 (36%), Gaps = 30/414 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L + + I +VSSDSR + +FVA+ G+ DGH F+ A Sbjct: 1 MIKLSLTEIAEHLGGKLLGD-DFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + ++VDN+++ + + + K +A+TG++G Sbjct: 60 NGARAVLVERE---------LPDAVAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+SV V I + + G + I RL + + + + + Sbjct: 111 KTSVKEMVATILSQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYT 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S+ S + N+ H++ + A + + A Sbjct: 171 SSLVKPSVAM--------------VNNVASAHLEGFGSLAGVAKA-KSEIFNHVATDGIA 215 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +I ADDA++ ++ + + ++ + IS + + Sbjct: 216 VINADDAFAAVMLAASQHLTQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVL 275 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G QV NAL A+ +C+A+G+ + + + L L V GR I Y Sbjct: 276 PLAGRHQVLNALAASSICLALGMSLSFINQGLSLLEPVKGRMLPTRLGRV-TVIDDSYNA 334 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV 415 S+ + ++ I+ R +V+ G GD +G A D Sbjct: 335 NPASVGAAIDWLQEISGNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFC 388 >gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] Length = 452 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + P++ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRILV--KG 437 >gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] Length = 457 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENFLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + +E + + + L + +VV GKG Sbjct: 395 ESAVISEAVSGKHFTDKVEMVDFL--VPLIETQLQQNKKVVVLGKG 438 >gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 378 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 68/402 (16%), Positives = 134/402 (33%), Gaps = 28/402 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ IN V+ DSR+I+ +F+ G DGH F+ QA+ Sbjct: 1 MINVTLEQIKHWIPCEIDEQYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A L + PI+ V++T K L A ++AVTG++ Sbjct: 61 KDGAGASFSEKGTELNEDIEG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G + LT + H Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 SS + TN+G H+ +++ AK + L + Sbjct: 172 EIELLSSIA---------EPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + + V H+ + + F Sbjct: 223 YDGDEPLLKSHLEQLNKARLISVGLGNSNTLVCHVDDIETEGIAFTI-----NDKESFTL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G + NA +A + +G+ + +++ + + R E T + I Y Sbjct: 278 PILGTHNMKNATIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403 + S++ + + ++ GR I++ G+ Q +G Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGENSQSMHEEVG 378 >gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] Length = 463 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 145/387 (37%), Gaps = 24/387 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 I + + + +++ +++D+R I+AG +F+AI G DGH F+ QA+AQGA A++ Sbjct: 7 NWIASVLAVSFEGQNQQVLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVI 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + +Q P +V + R L + + + +A+TG+ GK++V Sbjct: 67 VDHSVKVQ---------VPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I + G G + P+ L + + A+ Sbjct: 118 CAAILSQHGEVLATKGNFN----------NDIGVPLTLL---RLEPKHQYAVIELGANHI 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + D +K N+ HI+ + AK +F L A+I AD Y Sbjct: 165 GEIAYTTDLVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSG-LKAGGIAVINADSPY 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + S+ Q + + + P+ G+ + Sbjct: 224 VDYWLTSLDKSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLPIAGKHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+A L + +G+ A V + L + +V GR + N I Y S++ Sbjct: 284 TNALIACALTLPLGVTLAHVAQGLASMPMVQGRVNLIEVNDSLTVIDDTYNANVQSVKAG 343 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR 399 + + I G I FG G+ R Sbjct: 344 IDLLGQI-EGHQIFAFGDMGELGADAR 369 >gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 10403S] Length = 457 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH9] gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Staphylococcus aureus 04-02981] gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 452 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R] gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R] Length = 514 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 83/490 (16%), Positives = 160/490 (32%), Gaps = 47/490 (9%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + + ++ V DSR + G +F+A+ G + DGH F Sbjct: 1 MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60 Query: 63 AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112 AI +GA A++ + + I+ + + + + LS A + Sbjct: 61 AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDI 120 Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 H N++A+TG++GK+S F+ + + G + G + T Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTALRCTTD-- 178 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 + A G +H + + N+G H+ +++ Sbjct: 179 -----------TKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQ 227 Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 AK + E A++ ADD + + R + Q Sbjct: 228 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFSTDAGQANKSDYWATSISL 287 Query: 287 N---KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VV 342 + + T++ + + + GE QV NAL AA + + G+ LV+ LE Sbjct: 288 DAVARASFTLNTKDGSWPVALQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAAS 347 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCG---GDRD 395 R + I Y +S+ + + SGR V G GD Sbjct: 348 AHRMDVKTRADGVTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDA 407 Query: 396 QGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 +G + +NP + + + A+ Sbjct: 408 SEAHAELGAELAKYNVQELVAVGENP---NCAALAESAASLGVSTHVVSDVDAALELLAG 464 Query: 455 MLNKQDVLVV 464 + + DV++V Sbjct: 465 HIKRDDVVLV 474 >gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] Length = 457 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA++ Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV S P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-003] Length = 457 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella loihica PV-4] gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella loihica PV-4] Length = 456 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 83/407 (20%), Positives = 148/407 (36%), Gaps = 30/407 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I EL L+ + + +++VSSDSR + A +FVA+ G + D H F +A+ Sbjct: 1 MIPLKLSELAKVLNAKHIGD-DLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVM 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + P L+V N++K + + + +A+TG++G Sbjct: 60 DGASALLVERELPIAA---------PQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV V I + G + P+ L Sbjct: 111 KTSVKEMVATILSTQHQVLYTAGNFN----------NEVGVPLTLL---RLEPQHEYGVF 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + ++ N+ H++ + + AK +F L I Sbjct: 158 ELGANHLGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVI 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D A + S G + + I+ + P Sbjct: 218 NADDAFADVMRRAAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVSLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YA 363 L G QV NAL A +C+A+G+ +++ L +L V GR + G + +D Y Sbjct: 278 LSGRHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKGRMQ---PTRLGRFLLIDDTYN 334 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + ++ I R +V+ G GD +G+ A Sbjct: 335 ANPASVGAAIDWLQEIEGNRCLVLGDLGELGDNASLLHRQLGEKAKQ 381 >gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] Length = 427 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 24/378 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R + G +FVA+ G + DGH F V++ S + P Sbjct: 1 MTIDTRKVTPGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGGPQ 51 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 52 LVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNN 111 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + A+ G + D + + NL Sbjct: 112 DIGVPLTLLRLTPE-------------YDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + AK +F L K + I + + H R G Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGLPAKGTAIINADSNDWPHWQETLHHKRVWRFAPHGA 218 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + V T+ PLPG + NAL AA L +++G A V Sbjct: 219 EDIDFFASDVRIASQVTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 E L +L VPGR + + + Y S+ + + + R++VV G Sbjct: 279 REGLTQLQAVPGRLFPIELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMGE 338 Query: 391 GGDRDQGKRPIMGKIALD 408 G+ +G+ A Sbjct: 339 LGETAVDCHRQVGEAAKQ 356 >gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] Length = 436 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 131/399 (32%), Gaps = 26/399 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS A Sbjct: 4 ENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA- 62 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L VD+T L A + +TG+ GK++V + + +R Sbjct: 63 -------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDA 115 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ P+ L + + + G K Sbjct: 116 VSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAKPD 165 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A N R H+ L + A+I +DA + Sbjct: 166 AALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KTATFNL 223 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G + + + + + + + P+PG V+NA AA L +A Sbjct: 224 NTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAA 283 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ V E L+ + GR I Y +S++ + + + + R I Sbjct: 284 GLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMPAPR-I 342 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 V G G+ + + M A + A DN Sbjct: 343 FVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381 >gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor owensensis OL] gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor owensensis OL] Length = 448 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 78/425 (18%), Positives = 157/425 (36%), Gaps = 42/425 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ L+ + + ++ S +S+++ +F+ + G++ DGH F Sbjct: 1 MNL------WLSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118 + +A+ GA + + + P + V +T L AS + K ++ Sbjct: 55 VEEALQNGAISFISQKEFK--------NVRVPYVKVKDTLVALQDLASYVRDKLKGLTVI 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G +N + P I L+ Sbjct: 107 GVTGSVGKTSTKEYIFNVLNYKYKTFKNQGN--------FNNHIGLPFSI-----LNMPE 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 154 DTQIAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMA 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + K V N + Sbjct: 214 DDGMLIINNDNDILN---LHKGELKKRIITIGIENESHFRAKNVQRHQNGFSFEVD---- 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ + +YN+L A + I +GID L+ E + + + RFE + S I Sbjct: 267 NYTYFIESFNFHDIYNSLFAIAVGIILGIDRQLIKEAIRRKERLKRRFEIIQKGSI-TVI 325 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ I Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384 Query: 415 VTDDN 419 T + Sbjct: 385 CTGKD 389 >gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] Length = 452 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 73/467 (15%), Positives = 161/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCKIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLNTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 471 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 155/470 (32%), Gaps = 37/470 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V DSR G +FVA VG + DGH + Sbjct: 1 MIALSLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYARA 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A++ S P +VVD+ ++ L A + + ++A+TG Sbjct: 61 VVETGAVAVLGSRPV-----------GVPAIVVDDVQRALGALARHVVERLGATLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ + + F G + T +L Sbjct: 110 SAGKTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ + G N+G HI ++ A ++ + Sbjct: 158 -VLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ ADD Y K + R + A + ++ Sbjct: 217 GGVAVLNADDPYVKAMAARTTARVLLFGESDEADVRAENVTLTAAG-QPSFSLHTPSGCS 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSAKEIATALSEAGSLSRWRMEVTERPDGVTIVN 335 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 Y S++ L+ + + GR V G GD + +G++A+ L + Sbjct: 336 DAYNANPESMKAALRALAAMGRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGKLV 395 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S E G + A+ L DV++V Sbjct: 396 AVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 444 >gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 448 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 160/452 (35%), Gaps = 49/452 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L+ E+ ++ + + + S +S++I+ +F+ + G++ DGH F Sbjct: 1 MNLR------LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118 I +A+ GA + + + P + V++T L A + K ++ Sbjct: 55 IKEALQNGAISFISQKDFD--------DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G + Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPED------------ 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + ++++ Q S E Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + +YN+L A + +G+D L+ E + + + RFE + S + Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILGVDRELIKEAIRQKERLKRRFEVIKKGSI-TIV 325 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ I Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVI 384 Query: 415 VTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444 T +D I E+ G + + Sbjct: 385 CT-----GKDAFYIFDEVKKKDGTKAYFVTKD 411 >gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hydrogenobacter thermophilus TK-6] Length = 436 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 78/467 (16%), Positives = 165/467 (35%), Gaps = 49/467 (10%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L ++ + + + DSR ++ G +FVA+ G + DGH F +A Sbjct: 3 ELSARELASICRG----KLYGESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEAF 58 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 ++GA +V + ++VD+T + L A ++ V G++ Sbjct: 59 SRGAVGAIVQRGIKVPKGKF-------YVLVDDTLEALRRIALYRRRLFTGRVIGVAGSA 111 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + + G ++++ P I ++ Sbjct: 112 GKTTTKEMIAFLLSKIGKVCKTPKN--------YNSQIGLPFSI-----ANFEEDCQFWV 158 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + AS G ++ + K T +G +H++ +FE++ ++ Sbjct: 159 VEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAV 218 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + +H + + +G + + I+ + +D Sbjct: 219 LPKYV----------SHCYELKNVITFGEGGDLQATNIKLSKEG----ITFQVEDVSLSL 264 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +P + NAL + G+ A+G + + HL P RF + S I Y Sbjct: 265 RVPSLAVLENALCSLGVLKALGYNWKELSHHLANFSPAPQRFHLIRKGSF-LIIDDTYNA 323 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421 S+ L ++ RI ++ G + +GK+ +L D I + R Sbjct: 324 NPPSVRKALLSLSLFDGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMR 383 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +R ++ ++ EA+R ++ + V++V KG Sbjct: 384 FAYEECLRHGVLCYHS-----SSKEEALRYLSSLIREGSVILV--KG 423 >gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] Length = 452 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QGGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] Length = 456 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 162/469 (34%), Gaps = 37/469 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L+ + + + +++D+R +F A+ G D H ++ +A+ Sbjct: 1 MIKLTTQQLAQILNANLIGDGQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV A +TP LVV +TR L A L K I+A+TG+SG Sbjct: 61 QGATALVVQKA--------NTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q G + + P+ L + Sbjct: 113 KTTVKEMTASILQ------QTAGNPEAVLFTNGNFNNDIGVPLTLL---RLTEQHKFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + + AK ++ L P Sbjct: 164 ELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTP-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A ++ + G + V N + + P Sbjct: 219 GMAIINSEHNYIELWQKEIGSHAIQYFNGGDYKAENVEHSPNGSTFMLVSPKGSIEINLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE V GR + N + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL+ + ++ + RI++V G+ +G+ A ++ Sbjct: 339 VDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVL----SYGT 394 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKG 468 + I ++ ++ E A+++ L + +VV KG Sbjct: 395 ESAVISEAVLG-----KHFTDKAELTAYALDIIKQKLQENQKVVVLAKG 438 >gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] Length = 466 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 135/370 (36%), Gaps = 10/370 (2%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + VS+DSR ++ G +FVA++G + DG F+ A +GA A ++ Sbjct: 16 SGSNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAE----P 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A + + P++ V ++R L A+ + ++ VTG++GK++ + I + + Sbjct: 72 AGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASD 131 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + I + N L + + + G + + Sbjct: 132 NAIINDPAERVLATAGNLNN--DIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLAR 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN G HI+ + +A AK L + AI ADD Y+ + Sbjct: 190 PNIAVITNAGAAHIEGLGSVEAVARAKA-EILVGLDQSGTAIFNADDRYASLWRE--CAG 246 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ G K + + + + PG +YNAL AA + Sbjct: 247 AREIIDFGLTEKARVSAVYRLGRLVNTLQLRLPDATVEVKLQAPGVHNIYNALAAAAVAW 306 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++GI ++ LE+ V GR + I Y S+ L + G+ Sbjct: 307 SLGIKKEWIVAGLERFQSVHGRLQKKCGLHHAVLIDDTYNANPESVRAALAVLAA-AEGK 365 Query: 384 IIVVFGCGGD 393 I+V G G+ Sbjct: 366 KILVLGDMGE 375 >gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] Length = 457 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 462 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 75/427 (17%), Positives = 147/427 (34%), Gaps = 35/427 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +N V +DSR G +F + G + DGH F QA +GA AIV Sbjct: 19 QGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDLGSI-- 76 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 NTP+L VD+T K L K +L +TG++GK++ + ++ + Sbjct: 77 -----QNTPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEILAEVLKTRFT 131 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +N+L P + + K + + ++ + + + Sbjct: 132 V--------GKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINN---TTDMDELGEI--L 178 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A N+G H++ AK R L A A +KR Sbjct: 179 LPDAALILNVGPCHLEGLGDVSGVARAKAR-----LLDYLRAEHRAFINLDYPDLKREAG 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + + + + + +++ ++ F P+ G N + Sbjct: 234 ARPDLNTTWFSSRDPEADCRVSHSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVA 293 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381 + G+ + LEK + R + I Y S++ L+ R++ + Sbjct: 294 LEYGMQPDEIQAGLEKSSLPEQRMCISRSGDW-TIIDDSYNANPMSMQAALETARSLASG 352 Query: 382 GRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIP 437 G +++V G + RD+ + +G+ A T ++ E + + + G Sbjct: 353 GDLVLVLGDMAELGRDEARAHRDLGRSLCAGA----FTALFYNGDNLEHVLSGMNGEGSR 408 Query: 438 GFIEKGN 444 + + Sbjct: 409 KAHKIKD 415 >gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 459 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 138/403 (34%), Gaps = 21/403 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ L M + VS+DSR +F A+ G D H ++ +A Sbjct: 1 MITLSLSQIAAILGAELMGDGTVIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A VV N L+V ++R L A L K ++A+TG+SG Sbjct: 61 QGCVAAVVEHPTEG---------NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I Q+S + S + + P+ L + Sbjct: 112 KTTVKEMVASILQQSAVDSD------DVLFTQGNFNNDIGVPLTLL---RLTEQHKFAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + N+ H++ + A L + AI Sbjct: 163 ELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGSLDGVATA-KGEIFRGLTENGVAI 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I Y ++ + + + +++ + P Sbjct: 222 INLAHNYQQKWQADIGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSP 281 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE + NAL A L + +G +A V + LE +V GR + + Y Sbjct: 282 YLGEHNISNALAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 S++ + ++ + R+ VV G GD Q +G+ A Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNAQLCHQEVGEFA 384 >gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 78/453 (17%), Positives = 154/453 (33%), Gaps = 42/453 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ++ + ++ Q + + V DSR ++ G +F IVG K DGH F QA+ GA Sbjct: 4 TLTQIASAMASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGAC 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V S+ L + P+L+V +T L A K ++ V+G++GK++V Sbjct: 64 AVVASAPLDL---------DVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTV 114 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q+ +G ++ + + + + Sbjct: 115 KEMLAQVLSAAGRTAKNFRNLNNQIGLPLSILEMDGD-------------EDFWVLELGI 161 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S G + A N+G H++ + LL Sbjct: 162 SRPGDMDELGYILAPDAALLVNIGACHLEGLGSLAG----VAEQKAVLLDHVRKGGFACV 217 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +A E+M+ + ++++ G + + ++ + + + Sbjct: 218 NADYPELMQESTKRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSAG 277 Query: 310 FQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTS 366 V L A + + +G+ A + L V RF G +++D Y Sbjct: 278 IHVAENLAAVVAMAMELGMTFATIESALSAYSPVAQRF---VQTRVGTWLFIDDTYNANP 334 Query: 367 NSLEMILKNIRTITSGRIIVV-----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 S+ + + + G+ +V+ G D + R + G IA A Sbjct: 335 VSMARSIGEAKRLGEGKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFF--QGRY 392 Query: 422 SEDPEKIRAE---IIHGIPGFIEKGNRIEAIRT 451 +ED + + I + G E + A+R Sbjct: 393 AEDVKDGLGDYNGIFMKVSGAEEVLQALNAVRR 425 >gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] Length = 457 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 166/457 (36%), Gaps = 49/457 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +E +++ V DSR + +F A+ G + +GH F A GA A+VV Sbjct: 21 GKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVVVKREIE------ 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ + V++T K L A + +A+TG++GK++ + + + Sbjct: 75 --GADCFQIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASVLSKKYKTM 132 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG ++ TT P+ L + + V + + G + + ++ Sbjct: 133 KTIGNFNS----------TTGVPLTLF---NLEQGDEIAVVEMGMNHKGEIEKISELVEP 179 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G HI+ +++ F A + L K ++ DD K N Sbjct: 180 DLAMITNVGVTHIENLGSKENIFKA-KTEITKGLKKGGTLLVNGDDE----FFKDYTNDE 234 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V+ VG + + + GK++ F +P ++ VYNAL A Sbjct: 235 FNVVKVGINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFH 294 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSG 382 G++ + E L+ R + G + D Y +L+ L + I + Sbjct: 295 FGLNYEQIKEGLDDFMPTGNRMKIE--EVNGITLIDDTYNSNPEALKEALGLLNRIGGNN 352 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN-------PRSEDPEKIRAEI 432 R + V G G++ + + GK A + ++ + E+ + Sbjct: 353 RKVAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPGKAL 412 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 ++ + + L + D ++V A +G Sbjct: 413 YFFEKNYL--------VEEVFDFLKEGDFVLVKASRG 441 >gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 456 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 37/469 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L+ + + +++D+R + +F A+ G D H ++ +A+ Sbjct: 1 MIKLTTQQLAQILNADLTGDEQAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A+VV A + P LVV +TR L A L K +A+TG+SG Sbjct: 61 QGAAALVVQQANTEIAT--------PQLVVADTRLALGQLAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q G + + P+ L + Sbjct: 113 KTTVKEMTASILQ------QTAGNPEAVLFTNGNFNNDIGVPLTLL---RLTEQHKFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + + AK ++ L Sbjct: 164 ELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTQ-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A ++ + G+ + V N T+ + P Sbjct: 219 GVAIINSEHNYIELWQKEIGSHAIQYFNGRDYKAENVKHSPNGSTFTLVSPKGSIEINLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE V GR + N + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL+ + ++ + RI++V G+ +G+ A ++ Sbjct: 339 VDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVL----SYGI 394 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKG 468 + I ++ ++ E A+++ L + +VV KG Sbjct: 395 ESAVISEAVLG-----KHFTDKAELTAYALDIIKQKLQENQKVVVLAKG 438 >gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] Length = 461 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 152/480 (31%), Gaps = 37/480 (7%) Query: 10 DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E++ + + + DSR + FVAIVG D H +I A G Sbjct: 5 TVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGC 64 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +V+ + I+S+ I+ VD+T K L K + +TG+ GK++ Sbjct: 65 RVFIVNKGKDID-----IKSDMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTT 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + + P+ L S + + Sbjct: 120 TRDMVYAALSSERATLKNEKNFNNHFGV----------PLTLFNLDSS---YECAVIEMG 166 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G ++ + + +N+G H++ +Q+ F AKM + + + + Sbjct: 167 MSGFGEIEYLANMVNPKVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGD 226 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D S + + + + ++ + P G Sbjct: 227 DKFLSTLRDAERDYDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIF--IPTVG 284 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + +YNA+ A + GI + L R + + I Y + +S Sbjct: 285 KHNIYNAMAAIAVGTVEGISMEGIKRGLSNFEATGMR-QDIRKIGEYTVINDTYNASPDS 343 Query: 369 LEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +E L + GR I V G GD + +GK +D +D I+T E Sbjct: 344 MEASLSILGRY-EGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNSD-VIITV----GESA 397 Query: 426 EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH--ETVHIVTNGE 479 I E + N +A + E++ D ++ A +G E Sbjct: 398 VFINKEAEENGFDVKNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGMKFEKFVEYVKEV 457 >gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes J0161] Length = 457 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|330938043|gb|EGH41811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 106 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIE 454 KRP+M ++ LAD VTDDNPRSE P I +I G R +AI I Sbjct: 1 KRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIA 60 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 N DV+V+AGKGHE + NG+++ D L + Sbjct: 61 SANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 100 >gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] Length = 473 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 92/450 (20%), Positives = 154/450 (34%), Gaps = 41/450 (9%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT--- 90 + DSR I G IF A+ G DGH F+ A GA VVS+ + A ++ Sbjct: 32 AIDSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTE 91 Query: 91 -PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + L A+R K P I+ + G++GK++ +++ +G Sbjct: 92 NLFLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKE----------MTAAVLGT 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + + + P+ L + V + + HG + G Sbjct: 142 TFRVVATEGNFNNHIGVPLTLF---RLRDDTEIAVVEMGINHHGEMNELCQIAEPTHGLI 198 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G +H ++ T + A+ L+ L + ADD + + + + Sbjct: 199 TNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIE 258 Query: 270 VGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G I K+V I + + G VYNAL AA + + G Sbjct: 259 QPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQISGRHNVYNALAAAAIGLNFGAK 318 Query: 329 SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385 V LE R E + + + Y S+ L + + I G+ I Sbjct: 319 LESVKLALEHFVPKSGSKRMERI-CAAGLTILNDSYNANPESMRSALGTLASLICDGKKI 377 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS----EDPEKIRAEIIHGIPG 438 V+ G G + + +G+ N E P K G Sbjct: 378 VLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQEAPNK-----CKG--H 430 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 F K ++A++ E+ D L+ KG Sbjct: 431 FNTKSEMVQALK---EVAAPGDALLF--KG 455 >gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] Length = 467 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 163/471 (34%), Gaps = 44/471 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ + + + VS+DSR + G +FVA+ G + DGH FI A++QG Sbjct: 3 TLNEIAEATGGRMIGEGAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQGIT 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 + +++ + + ++V +T + L A+ + + VTG++GK++ Sbjct: 63 VFLAEESWAERH---ELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 119 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I ++G G + P+ + + + Sbjct: 120 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTIF---RLTGRERWAVFEIGM 166 Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + RL I + G TN H++ + + AK LF L S A+ Sbjct: 167 SEFG-EIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKPGSVAVYNV 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD + G + + T+ + + G Sbjct: 225 DDPLVSACPTHLNVTRLTFGLRG--AEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYG 282 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +YNAL AA A+G+ ++ + LE+ RF+ I Y S Sbjct: 283 RHNIYNALAAAAAAHALGVSGEVIRQGLEEFSPYDKRFQLEEVAGV-TLIDDSYNANPAS 341 Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L ++ + GR++ V G G + +GK+A D + Sbjct: 342 MAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGSVDRLCL--------- 392 Query: 425 PEKIRAE-----IIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAGKG 468 K+ E + G+P R + + + + D ++ KG Sbjct: 393 LGKLIDETAKGALEAGLPETDLVLGRDHEQLAQELLTFVQPGDCILF--KG 441 >gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] Length = 453 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 145/384 (37%), Gaps = 23/384 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +++ V +DSR Q G +FVA+ G + D H F+ + +A+GA A+V ++ Sbjct: 17 GADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVARGAAALV--RDGFELAGAS 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 I++ D+TR L A+ P + VTG++GK++V + I + + Sbjct: 75 LIQAG------DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVKEMLAAILRAHAGAD 128 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + ++ P+ L + + + + HG + + Sbjct: 129 AVLATAGNFNNDI-------GLPLTLLQ---LKPQHRYAVIEMGMNHHGELSYLTGLTRP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N R H + + + AK +FE L A++ ADDA A + Sbjct: 179 QVALVNNAMRAHFGHFGSTEDVARAKAEIFEG-LIDAGVAVVNADDANLPLFRAAAGSH- 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R LS G + + + + T+ P PGE V NAL AA +A Sbjct: 237 -RQLSFGLGLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAAAAALA 295 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + + A + E L GR + + I Y +S++ + + + R Sbjct: 296 LEVPLAAIAEGLSAFAGAKGRLQIKQSPRGLTVIDDSYNANPDSMKAGIDVLAGLPGPRC 355 Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406 V+ G G+ +G+ A Sbjct: 356 FVMGDIGELGEAAPALHAEVGEHA 379 >gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] Length = 509 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 152/471 (32%), Gaps = 46/471 (9%) Query: 10 DFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E+ + + + V+ DSR + G +FVA+VG + DGH + A +QGA Sbjct: 47 TAQEIASITGGELSCPSDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQGA 106 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTS 124 ++ P +VV +T++ L A + E ++ VTG++ Sbjct: 107 VLVLSQKNI----------KGVPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSA 156 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + Q+ G G + LT Sbjct: 157 GKTTTKDLMGQMLATYGNVVVPAGSLN----NELGLPLTVLKADET---------TDFLV 203 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + AS+ G D H L I + + + L + A Sbjct: 204 TEMGASAVG-DLHYLTSIAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQGIA 262 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ ADD + + AH SV + A + G Sbjct: 263 VLNADDHRVIAMKELAHGQVRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTL 322 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYA 363 L GE V NAL A A+G+ L P R + V I Y Sbjct: 323 TLVGEHHVTNALAALTAVTALGMPLDQAAVALSAARATSPHRMDVVDRPDGVTIIDDSYN 382 Query: 364 HTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVT 416 +S+ L+ + T+ R + V G G + + +G++ + L + + +V Sbjct: 383 ANPDSMRAALRALATVAGRQRRTVAVLGEMRELGPQSRTYHDDIGRLVVRLNISRLIVV- 441 Query: 417 DDNPRSEDPEKIRA-EIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + I + G +E + A + L DV+++ Sbjct: 442 -----GQGAQGIADGALQEGSWGDEVVEVADLNAAHAALNDYLQPNDVVLI 487 >gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes Clip81459] gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 457 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 26/374 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A + P+++V++T L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ N R L+ G + I+ + + P Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTI 379 +L+ +LK + Sbjct: 338 PTALKTVLKTFMHM 351 >gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 477 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 92/448 (20%), Positives = 151/448 (33%), Gaps = 38/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR G F AI G++ DGH + A+A GA +VVS A A R Sbjct: 26 ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG + Sbjct: 82 VPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKTTTKEMLRHVLAPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA V + G + + I+ Sbjct: 142 FNNHWGV----------PLTLA---RMPEDTDYGVFEVGMNHPGEVRPLVAMIRPDVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE L P + +D ++ + S Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGAD 308 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMIL---KNIRTITSG 382 +E L L GR + + GG + Y S+ + G Sbjct: 309 MQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALLAASEPTGRG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439 R I V G MG A D+A+ + A + +P Sbjct: 369 RRIAVLGDML--------EMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPES 420 Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464 + R E + + DVL+V Sbjct: 421 VHVEYRENTSELTDYVLNSVAPGDVLMV 448 >gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 465 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 72/409 (17%), Positives = 141/409 (34%), Gaps = 26/409 (6%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + +I L E KI V DSR + G +++ I G K +GH ++ QA Sbjct: 1 MIIRSIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 IA GA+A++ +++V++T K L A + ++ +TG+ Sbjct: 61 IANGAKAVLWERK------EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S + + Q ++ +G P+ L S + Sbjct: 115 NGKTSTKDILASLLQEHYITQKTLGN----------YNNEIGVPLTLL---SLSENVEAA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + + G ++ +N+G H++ +T + AK+ + E L Sbjct: 162 VIEMGMENLGELSFLTHMVEPDIAIISNVGTAHLENLKTMENIAKAKLEIVEGLKEHGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + V + R+ + G + + ++ ++ V+ + + Sbjct: 222 IYNGDQEILQNAVTQAQIPGHIRIRTFGVKPQNDYVISH-ITQKREGVSFCLNDDVCPYH 280 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ Q NA A A+G+ + E + + R E V + + Y Sbjct: 281 VDMIGKHQAMNATAAWIAAKALGLSVEEIREGYQNIEKTGLRNELVDFGNC-LILNDSYK 339 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409 S L + I V G GD +GK Sbjct: 340 SNPQSALAALDTMEEFDVPYKIAVLGDMLELGDTSDMIHYTLGKDLAKY 388 >gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 152/394 (38%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ Q + I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P ++V +TR+ A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + T+ + D L PLPG + N Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D A V L +L VPGR + + Y S+ ++ Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R +VV G +G+ A Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAA 379 >gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 74/410 (18%), Positives = 147/410 (35%), Gaps = 30/410 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ VS+D+R I+ +F+A+VG + D H F QAI GA+A++V A + Sbjct: 19 GADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERALDV----- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +VV NT++ L ++ + +A+TG+ GK++V V I G Sbjct: 74 ----DVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + A+ G + +K Sbjct: 130 YTAGNFN----------NDIGVPLTLL---RSSQKDDFAVIELGANHIGEIAYTTQLVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L A++ D + + + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLAPGKTALVNLDSHGGELWSQVLVDKH 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + SV Q ++ + + + + G+ V NAL A+ L + Sbjct: 236 VKTFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAM 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G V L +L V GR + I Y + +++ ++ + + + R Sbjct: 296 EMGASIEEVAVGLAQLSAVKGRVDVSQLTPMIRLIDDSYNASVPAMKAAIELLASFSGCR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +++ G +G+ A ++T ED I + Sbjct: 356 WLILGNMAELGTESLALHQQVGEHAAPFQFDYVLT----YGEDARVISQQ 401 >gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes LO28] Length = 447 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 140/363 (38%), Gaps = 24/363 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 SI +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Sbjct: 3 DSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKN 62 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++ P+++V++T L A++ + ++A+TG++GK++ + I Sbjct: 63 VPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 116 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + + G + LT P +A ++ + V + + + Sbjct: 117 VETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA- 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 TN+G HI+Y +++ AK+ + L P + + + Sbjct: 175 -----------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + N R L+ G + I+ + + P+ GE V+N + Sbjct: 219 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTM 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A IGI+ + L+ + R E++ T S + Y + +L+ +LK Sbjct: 279 AAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTF 338 Query: 377 RTI 379 + Sbjct: 339 MHM 341 >gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Planococcus donghaensis MPA1U2] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 138/401 (34%), Gaps = 29/401 (7%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ++ L I + I VS ++R ++ G +F+ G +GH ++ AI G Sbjct: 2 KKQIEQVAKWLDI-KTNLKGIDITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELG 60 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + + P+L V++ L A + ++ +TG++GK+ Sbjct: 61 ASASLWQRD------EPGAPEDLPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKT 114 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S V + + G + L P I LS V + + Sbjct: 115 STKDLVASVLKPYFKVQKTPGNFNNQ--------LGLPLTI-----LSLEEDTKVAVLEM 161 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G + + + TN+G H+ +++A AK L + Sbjct: 162 GMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAIAEAKF-EITAGLQQHGKLFYD 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ + M+ + +K + + I D F P+ Sbjct: 221 GDEPLLQPFMEAFPQGVSFGFDDNNELTVTDIKATESGSSFMVSGII----DAAFTIPVL 276 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE QV N L A + + G+ + + L+ + R + + ++ I Y + Sbjct: 277 GEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDMRMQMIQADNGAIFINDAYNAAPS 336 Query: 368 SLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGK 404 S+ L IR T + VV G GD +Q + K Sbjct: 337 SMNAALNFIRETTMKDKKWVVLGDMLELGDDEQSYHEALSK 377 >gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ Q + I+EV++D+R + AG +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P ++V++TR+ A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + T+ + D L PLPG + N Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D A V L +L VPGR + + Y S+ ++ Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R +VV G +G+ A Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAA 379 >gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ Q + I+EV++D+R + AG +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P ++V++TR+ A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + T+ + D L PLPG + N Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D A V L +L VPGR + + Y S+ ++ Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R +VV G +G+ A Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAA 379 >gi|289809140|ref|ZP_06539769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458 MG IA + ADI +VTDDNPR+E+P I +I+ G+ R EA+ AI Sbjct: 1 MGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKD 60 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 DV+++AGKGHE IV D +LG+I Sbjct: 61 NDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 97 >gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] Length = 460 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 180/474 (37%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+I+ ++ + +I+ V DS++++ G +FV I+ DGH ++ Sbjct: 10 MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPII-RMNDGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + + Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 164 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 223 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + N L ++ V + Sbjct: 224 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ + I Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 338 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + +S++ ++ ++ + + ++V G G + + +GK+ + + + T Sbjct: 339 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 398 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ K+DV+++ KG Sbjct: 399 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 446 >gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ Q + I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P ++V +TR+ A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + T+ + D L PLPG + N Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D A V L +L VPGR + + Y S+ ++ Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R +VV G +G++A Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEVA 379 >gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] Length = 452 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 73/467 (15%), Positives = 161/467 (34%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + S+ + + T+ +GR I++ G G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTNDLKAHDRVLV--KG 437 >gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] Length = 455 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 128/394 (32%), Gaps = 27/394 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + Sbjct: 20 GADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVA------ 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P L+V + R L + + ++A+TG+SGK++V + I + GL Sbjct: 74 --DVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGLVH 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + P + + AS G + G+ Sbjct: 132 ATRGNLNNDLGAPLTLLEIAPE-------------HSAAVIELGASRIG-EIRYTVGLTQ 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N E L + AI+ DD RA + Sbjct: 178 PQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARAGSHK 237 Query: 265 CRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + H + + G+ D + GE V NAL AA Sbjct: 238 VVSFARSNPKADFHATDIGRDARGCPSFKLHGAGETVDVQLNVLGEHNVSNALAAAAAAH 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G+ + L + V GR + I Y +S+ + + SGR Sbjct: 298 AVGLSLNGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDSYNANPSSMCAAIDILAGF-SGR 356 Query: 384 IIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414 ++V G G+ Q +G A D Sbjct: 357 TVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390 >gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] Length = 473 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 85/466 (18%), Positives = 172/466 (36%), Gaps = 41/466 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 LI + F + + +S DSR + G IF I G+ DGH F QA A+GA ++V Sbjct: 10 LIAAIDGFVIGCMPETFSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQAYARGAGVLIV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + + P++VV + + L A + I+A+TG+ GK++ + Sbjct: 70 ----AENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +Q+ G + + P+ LA+ + E + Sbjct: 126 KQVLATVGKVHANLASLNNCWGV----------PLTLARM-----PVESDYGIFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + + T++ H+ + + + +AK +FE L +E A++ AD+ Sbjct: 171 ADEIRPLVKLVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEG-LDEEGVALLNADNG 229 Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++++A G + + + + + + + + + G++ PG Sbjct: 230 FFSYLVRKAKQCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHT 365 V N+L C IGID A V L + + GR I Y Sbjct: 290 HIVQNSLAVIAACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNAN 349 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418 S+ L GR I + G + ++ R ++ I A+ + Sbjct: 350 PASMRAALDLLATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFL--- 406 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + + ++ + N + + ++ D+L++ Sbjct: 407 --FGEAMKFLAIDLSAYV-KVYYAENIEKILPLIFAEISNGDLLMI 449 >gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudoalteromonas atlantica T6c] gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 471 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 87/406 (21%), Positives = 152/406 (37%), Gaps = 30/406 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + E+I + + I VS+D+RHI + +F+A+ G DGH FI QA Sbjct: 9 IAQQVQGEIIRSENSI---AEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQT 65 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A+VVS ++V +T+ L L + + +A+TG+SG Sbjct: 66 SGAIAVVVSRQVETP---------LAQILVSDTKAALGLLGQAVKREVAPKTVAITGSSG 116 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I R G G + P+ L + V Sbjct: 117 KTTVKEMVAAILSRRGKVLATKGNFN----------NDIGVPLTLL---RLEAQHEFAVV 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + +K + N H++ + A + L K+ AI Sbjct: 164 ELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSLLGVARA-KSEIFKGLGKDGLAI 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 AD + + + + S + + V + + P Sbjct: 223 FNADSQFYAFWHGKYEHLRNQRFSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLP 282 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG V NALV+A L I +G + V L+ + V GR + + + + Y Sbjct: 283 LPGIHNVSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTYNAN 342 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 S+ + + + +GR I+V G G+R + +G+ A + Sbjct: 343 VASVNAAIDLLGSF-AGRKILVLGDMAELGERARFYHQQVGEYAKE 387 >gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] Length = 455 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 95/461 (20%), Positives = 161/461 (34%), Gaps = 43/461 (9%) Query: 15 INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I ++ + E + V DSR ++ G +F AI G++ DGH F +A A GA A++ Sbjct: 12 ITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLA 71 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S ++V D L A+ + ++ VTG+ GK++ + Sbjct: 72 SRPVDAPA----------VIVRDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLL 121 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + +R G + +G + + LT + + A + G Sbjct: 122 AGLTERIGPTVAPVGSHN----NEIGHPLTVLKADE---------RTRFLVLELSARNVG 168 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + G N+G HI ++A AK L E LP++ A++ ADD Y Sbjct: 169 HIAYLTRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEA-LPEDGVAVLNADDPYV 227 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +E+ R + + + + T+ L G V Sbjct: 228 REMAGRTRAR-VTWFGRSAEARIRAENETLDERGRASFTLCTPSGSAPVRLRLHGAHMVP 286 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 +AL AA + +G+ + E L + R E I Y + +S+ Sbjct: 287 DALAAAAVAYELGLPVVAIAEELSRAEPRSRWRMEVTDRADGVTVINDAYNASPDSVRAA 346 Query: 373 LKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNPRSEDPEK 427 +R + GR + G+ G+IA + IV D+ Sbjct: 347 FAALRAMGDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDD-------- 398 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+ G PG I + A R L DV++V KG Sbjct: 399 -AGPILAGAPGAIHVPDTDAAARELASRLAPGDVVLV--KG 436 >gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] Length = 486 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 153/451 (33%), Gaps = 39/451 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I+ G F AI G++ DGH + A+A GA IV+S A A R Sbjct: 26 ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLAMANGAAMIVISEA----RLPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVD+ L + I+AVTG+ GK++ +++ SG + Sbjct: 82 VPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKTTTKEMLRRTLSPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAG 207 + P+ LA+ + E + ++ R ++ Sbjct: 142 FNNHWGV----------PLTLARM-----PEDTDFGVFEIGMNHPEEIRPLAKMVEPHVA 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H+ ++ AK +F+ + P + +D + V Sbjct: 187 IITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAALAAGVEHV 246 Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S G K + L + A + +++ G+ + PG NAL G + + Sbjct: 247 HSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVLGTVMLVD 306 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL--------KN 375 D ++ L L GR + G +D Y S+ + Sbjct: 307 ADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALLATSSPDA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEII 433 +GR I V G + + + +A L A I V P + + Sbjct: 367 NVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGP----EMAALRDAL 422 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + N E + + DVL+V Sbjct: 423 PESVYVEYRENTEELAEFVLNSVAPGDVLMV 453 >gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] Length = 457 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 146/377 (38%), Gaps = 26/377 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I + D+R I++G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V+NT L A++ + ++A+TG++G Sbjct: 62 MGAVATFWQKDVPNP------PTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + + + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y +++ AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + ++ + R L+ G + I+ D + P Sbjct: 223 -----PHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWEPDLEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ T S + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTITSG 382 +L+ +LK + S Sbjct: 338 PTALKTVLKTFMHMDSK 354 >gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 155/479 (32%), Gaps = 78/479 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ + VS D+R +Q G +FVA+ + DGH F+ A+ +GA A +VS Sbjct: 20 RDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASALEKGAAAALVSR------VPEG 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +N P+L+VD+ L + I+AVTG+ GK+S ++ + +G + Sbjct: 73 LPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKTSTKEMLRTVLAAAGRTHA 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + P+ LA+ + + + S G ++ Sbjct: 133 SEASYNNHWGV----------PLTLARMPAD---TEYGVLELGMSHPGEIAPLSRMVQPH 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G T + H + + + + K +FE LLP+ + + + Sbjct: 180 VGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAKDKGAR 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + L + + F G NAL A+ Sbjct: 240 VITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVIAAADAL 299 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMI-------- 372 G+D A L L + GR + +D A+ +N M Sbjct: 300 GMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAALDVLAL 359 Query: 373 ---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + GR + V G + + + +A D A Sbjct: 360 SEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHA------------------- 400 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAI-------------------EMLNKQDVLVVAG-KG 468 + + G R++A+ A+ + + DV++V G KG Sbjct: 401 ---LTAADLIVCVGTRMKALHAALPAERAYWLATPEEILPHITRIADAGDVVLVKGSKG 456 >gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria flavescens SK114] Length = 438 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 137/399 (34%), Gaps = 26/399 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ + +DSR IQ G +F A+ G + D H F+ +A GA A+VVS A Sbjct: 4 ENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA- 62 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L V +T L A + +TG+SGK++V + + + Sbjct: 63 -------LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEA 115 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + ++ P+ L K + L R+ G Sbjct: 116 VLATAGNFNNHI-------GLPLTLLKLNEKHRYAVIEMGMNHFGELSL-LTRIAG--PN 165 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N R H+ A E L + A+I +DA Sbjct: 166 VALVNNALRAHVGCGFDGVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNA 225 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + G IH + + + + + + P+PG V+NA+ AA L +A Sbjct: 226 Q--TFGVASGDIHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAA 283 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ A V + L+ + GR I Y +S+++ + + + + R I Sbjct: 284 GLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDDTYNANPDSMKVAIDVLAAMPAPR-I 342 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 V G G+ + + M A + A DN Sbjct: 343 FVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDN 381 >gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] Length = 466 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 141/386 (36%), Gaps = 30/386 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + V SDSR ++ G +FVA+ G + D H FI +A+GA A++VS Sbjct: 27 VEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDA-------- 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +V +TR L + + +AVTG++GK++V + I + ++ Sbjct: 79 -GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEEQRL 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203 +++ P+ + + + G+ H G+ Q + Sbjct: 138 ATGGNLNNDI-------GLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTV---- 186 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHN 262 TN R+H ++ + +A + L A+ + + R Sbjct: 187 ---AVITNAQREHQEFMVSVEAVAHEHAAAIAALPANGVAVYPLDAESGGAYAPVWRNAA 243 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R LS G + V + Q + + G FD L GE V NAL A Sbjct: 244 GARRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALAAIACA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G+ + L V GR + T I Y +S+ + + + Sbjct: 304 LAAGVHVPAIQRGLAGFQAVKGRLQVKYTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406 R++V+ G GD+ +G A Sbjct: 364 RVLVLGDMGEVGDQGPAFHQEIGAYA 389 >gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus sakei subsp. sakei 23K] gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus sakei subsp. sakei 23K] Length = 458 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 161/472 (34%), Gaps = 44/472 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ + QW ++ V+ D+R ++ G +FV + GN+ DGH FI Sbjct: 3 MQLSEIAR------MTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA A + +SA Q ++ P+L+V + A R K ++A+ Sbjct: 56 NQARENGAVATLWASARDDQ------PTDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + LS ++ Sbjct: 110 TGSNGKTTTKDMTAA-------------VLGSQYNIHKTQANFNNEIGVPQTILSMEANT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G H L I + + + + + + L + Sbjct: 157 EILVIEMGMDRPG-QLHALSEIAMPDVAAITMIGEAHIEFFKTRDKIADAKMEITDFLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ ++ R ++ +V A K Q ++ D Sbjct: 216 DGLLVYDGDEP----LLNERVGDLERETFGSATTNTLYPIQVRAGETKTQFKLNA-WPDV 270 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G + V NAL A + I ++ + L V R E++ + + Sbjct: 271 AFEIPMMGAYNVNNALAAILIGQHYHIKPEVMSKALANFEVTRNRTEWLVGTAGQRMLSD 330 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIV 415 Y + +L+N T GR I V G G + + + + Sbjct: 331 VYNSNPTAAIEVLRNFSHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYL 390 Query: 416 --TDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 T+ P + I AE +H + E I E + D++V+ Sbjct: 391 FGTEIKPLFDKLATIYPAEQLHYFEKTQQP----ELITALAETIQPSDLVVL 438 >gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CNPAF512] Length = 479 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 136/388 (35%), Gaps = 34/388 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I +G F AI G++ DGH + A+A GA +VVS A A R Sbjct: 26 ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG + Sbjct: 82 VPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ V + G + + I+ Sbjct: 142 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVAMIRPDVAVI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ ++ + AK +FE L + +D ++ + S Sbjct: 189 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGIENIHS 248 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L + + +++ G+ + PG NAL A G+ +G D Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 308 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381 + L L GR + + G +D Y S+ + + Sbjct: 309 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPSG 368 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALD 408 GR I V G MG+ A Sbjct: 369 RGRRIAVLGDML--------EMGEYAEK 388 >gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] Length = 426 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 153/449 (34%), Gaps = 57/449 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+ ++ G +FVA+ G K DGH FI +A+ GA AI+ D I Sbjct: 9 FVLNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSDR---------I 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V+++ L+ A G ++ VTG+SGK++ + + + G Sbjct: 60 FLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P I L+ + + + + AS G H N+ Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ T++ + + + A+ DD ++R + L G Sbjct: 167 GSAHLEFFGTRERI-METKMEIIKHSKENATAVTLFDDPD----LRREVPCYRKTLFFGK 221 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 +G LK F +AA LC+ + + Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRALGETVD 280 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389 + L L VPGRF +G I D Y + + + ++ + R VV Sbjct: 281 IFDLASLKTVPGRFNVR--EKKGVLIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMK 338 Query: 390 CGGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAEII 433 G+R + +G+ L + I+ D DPEKI ++ Sbjct: 339 ELGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSD-----DPEKIAKDLA 393 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 + + K +R I +EM K+ Sbjct: 394 SRVTEGDVVLFKASRAVRIEKVLEMFEKE 422 >gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 156/477 (32%), Gaps = 34/477 (7%) Query: 1 MK----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 MK L D + ++N P + + + S DSR ++ G IFVA+ G + DG Sbjct: 1 MKGVLSLHD-FRRCGELVMNPGEPMPPEVADPVV---SIDSRKVEEGGIFVALPGERTDG 56 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H F+ +GA ++VS + S LVV +T L A+ Sbjct: 57 HRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGTLVVQDTVSGLQQLAAIYRESFSIP 116 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ V G++GK++ + + + + P+ L Sbjct: 117 VVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNNH----------LGVPLTLLAMRRE 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + V + + G + + G TN+G +H+++ A+ LF Sbjct: 167 ---TEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDGVARAERALFSF 223 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L + DD ++ + G + + E Sbjct: 224 LDETGGTIFVNNDDPRLRDAATDPQRHILYGMHCGDCCSCRGGALSVLPDGSLRFMLYSE 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + G V NAL AA + I GI+ V LE L G ++ G Sbjct: 284 RGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGLEGLVPREGWKRLEVVSAGGV 343 Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411 + D Y +S+ + + + + GR I V G GD G+ GK + Sbjct: 344 TLLNDTYNANPDSMRLAIDALLDMPCQGRRIAVIGDMLELGDAGPGEHEATGKYLAGSSV 403 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I E I + G +R + L + D ++ KG Sbjct: 404 DMIF----SFGELAGSICF-LNPGRCRGH-FTSREKLFDALSRELEEGDTVLF--KG 452 >gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 448 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 76/452 (16%), Positives = 159/452 (35%), Gaps = 49/452 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ ++ + + + S +S++I+ +F+ + G++ DGH F Sbjct: 1 MNL------WLSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118 I +A+ GA + + + P + V++T L A + K ++ Sbjct: 55 IKEALQNGAISFISQKDFD--------DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G + Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPED------------ 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + ++++ Q S E Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + +YN+L A + +G+D L+ E + + + RFE + S + Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILGVDRELIKEAIRQKERLKRRFEVIKKGSI-TIV 325 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ I Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384 Query: 415 VTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444 T +D I E+ G + + Sbjct: 385 CT-----GKDAFYIFDEVKKKDGTKAYFVTKD 411 >gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] Length = 426 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 81/451 (17%), Positives = 154/451 (34%), Gaps = 61/451 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+ ++ G +FVA+ G + DGH FI +A+ GA A++ D I Sbjct: 9 FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------I 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V+++ L+ A G ++ VTG+SGK++ + + + G Sbjct: 60 FLVESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P I L+ + + + + AS G H N+ Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNV 166 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGCRVLSV 270 G H+++ T++ KM + + + + D +EV ++ G Sbjct: 167 GNAHLEFFGTRERIMETKMEIIKYSKENATAVTFFDDSDLRREVPRYRKTLFFGKESGDS 226 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +G + + A + +V+ + L + A G Sbjct: 227 VLKGWWYYEGSTIAEFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGET-------- 278 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV-- 387 + + L L VPGRF G I D Y + + + ++ + + VV Sbjct: 279 VDIFDLASLKTVPGRFNVR--EKEGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGA 336 Query: 388 FGCGGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAE 431 G+R + +GK L ++ I+ D DPE I + Sbjct: 337 MKELGERSKEFHEELGKRLNVLDGVYVFLSEPEAEWIKSEKIILKSD-----DPEDIAKD 391 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 + + + K +R I +EM K+ Sbjct: 392 LAARVTEGDVVLFKASRAVRIERVLEMFEKE 422 >gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] Length = 300 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 15/290 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + E++I+++++DSR + G IFVA VG D H F QG + +VV+ Sbjct: 16 LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140 ++ +N +VV +T + S+ A L+ ++ TGT+GK+S+A+ + I ++ Sbjct: 70 -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128 Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +S +G + TTP + L K + G +++E SSHGL RL Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK E L KE ++ DD++S+ + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 R + + + + P Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPY 296 >gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] Length = 447 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 139/363 (38%), Gaps = 24/363 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 SI +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Sbjct: 3 DSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKD 62 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + P+++V++T L A++ + ++A+TG++GK++ + I Sbjct: 63 VPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 116 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + + G + LT P +A ++ + V + + + Sbjct: 117 VETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA- 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 TN+G HI+Y +++ AK+ + L P + + + Sbjct: 175 -----------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + N R L+ G + I+ + + P+ GE V+N + Sbjct: 219 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTM 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A IGI+ + L+ + R E++ T S + Y + +L+ +LK Sbjct: 279 AAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTF 338 Query: 377 RTI 379 + Sbjct: 339 MHM 341 >gi|225351404|ref|ZP_03742427.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157748|gb|EEG71031.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 422 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 72/420 (17%), Positives = 142/420 (33%), Gaps = 20/420 (4%) Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152 ++ RK +SL ++ YG + + T K + +G S + S+ Sbjct: 2 NDARKAMSLLSAAFYGYPQNQLKIIGITGTKGKTTTAYLTQAMLNGCSCGKCALFSSADN 61 Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ LTTP + + + + G+ ++ +E SS R+ G+ +F Sbjct: 62 CLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKVDRVFGLTFDVAAFL 121 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ DHI + + + A + ++ Sbjct: 122 NISPDHISPIEHPTFEDYFHCKRQIVKNCRSLVLGTACAHADLIRQDAAIADIPVTTFAL 181 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS- 329 G + + + + L G+F NA A + A+G D Sbjct: 182 GEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGDFNYANAAAAIAIAHAVGFDFH 241 Query: 330 ---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--- 383 A + + GR E VDYAH S+ +L + Sbjct: 242 ETAAKEALRNMEPVRIAGRMEHFHDTKSNTIAIVDYAHNYASVTALLDYVYQRYGKDDPE 301 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----F 439 + +V G G++ +R + + A + + I+T ++ E E + +++ + Sbjct: 302 VTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTDDEPVEHVCQDMLDSVTNPDLDA 361 Query: 440 IEKGNRIEAIRT--AIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R EA+ + AI+ N ++++ GKG+E D I+ I GL Sbjct: 362 RIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNERWFKDHGKHIPFEGDDHIVERIFGL 421 >gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 155/450 (34%), Gaps = 35/450 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 VS+DSR QAG IF+ + G + DGH FI +AI +G A +V++ Q + Sbjct: 26 NFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRAIKRGVRA-LVAAEAWWQRQNHQFPK 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + I++V T + L A + ++A+TG+ GK++ + + Sbjct: 85 DLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSCGKTTTKEMIALVLASRFRV----- 139 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + +N + P L+ + V + + G + + Sbjct: 140 ---LKNELNLNNLIGLP-----QTLLALNTGHETAVVEMGMNHFGEIRRLAQIARPDIAV 191 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ H++ + + AK + + L D Sbjct: 192 VTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIY--NADDQRLRAALHHFKGQTLSF 249 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + Q+ I +GK + LPG Q+YNAL AA + +A+G+ Sbjct: 250 GFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNALAAAAVGLALGLP 309 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387 + + + L + + R + S Y S+ M L+ + ++ GR + Sbjct: 310 AEQISQALGRFAGLKHRSQMQCHTSGIHIFNDCYNANPGSMAMALQTLASLKNQGRAVAA 369 Query: 388 FGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD---DNPRSEDPEKIRAEIIHGIP--G 438 G G +G +A L D+ +V D+ R + G+P Sbjct: 370 LGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQ-------GALAAGMPHSR 422 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E D L+V KG Sbjct: 423 IYLVASHAEGADIIRGFCRPGDTLLV--KG 450 >gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 460 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 174/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V ++ I + + G ++ P+ + + Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R AK +L + Sbjct: 165 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E+ +Y D ++ R + + L ++ V + Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ I Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFSKVPTEKIQEALQQINITQMRFQFLTAKIGFTIIND 338 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + + +GK+ + + T Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 398 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E I N+ E ++++ K+DV+++ KG Sbjct: 399 ----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 446 >gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 452 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 159/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ + IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|49185423|ref|YP_028675.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|65319895|ref|ZP_00392854.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] gi|227814595|ref|YP_002814604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685159|ref|ZP_05149019.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737610|ref|ZP_05195313.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743209|ref|ZP_05200894.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751925|ref|ZP_05203962.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760445|ref|ZP_05212469.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179350|gb|AAT54726.1| Mur ligase family, catalytic domain, C-terminal [Bacillus anthracis str. Sterne] gi|227006794|gb|ACP16537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 99 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEML 456 MG IA +D +T DNPRSEDP+ I +I G + + +R AI AI M Sbjct: 1 MGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMA 60 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D++++AGKGHET I+ + D + R+ + Sbjct: 61 SSNDIVLIAGKGHETYQILKDST-IHFDDKEKARQAI 96 >gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 462 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 39/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+Q E+ + + W + + V+ DSR +QAG +F+ ++G DGH Sbjct: 1 MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 +I AI GA A + D + + + P+++V +T L K ++ Sbjct: 54 YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + +G ++ + P+ L S Sbjct: 109 AVTGSNGKTTTKDMI----------ASVLGTQFNVTKTHANFNNQIGVPVTLL---SMEP 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V V + G ++ T +G HI++ T+ +AKM + L Sbjct: 156 NTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + +RA + G Q + Sbjct: 216 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + P+ G + V NAL A + I A + + R E++ + Sbjct: 272 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 331 Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +L + G+ I V G + + +A +L D A + Sbjct: 332 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIAS 390 Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + G + + + + I ++ D +++ KG Sbjct: 391 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 443 >gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] Length = 466 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 141/423 (33%), Gaps = 37/423 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M+L E++ I V DSR + G +FV I G + DGH Sbjct: 1 MRL------TLSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHN 54 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F +A+++GA A++ A + TP+L+V +T L A + ++ Sbjct: 55 FAVEAVSKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGKLAKAWRERAQARLV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AV+G++GK++V I + G ++ + +N++ P L Sbjct: 109 AVSGSAGKTTVKELTAAILAKVGPTA--------KNFKNFNNKIGLPLS-----MLEAGE 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + + + S+ G + N+G H++ A+ L Sbjct: 156 TDRLWVMELGISAPGEMAPLAAIAEPDVAVIHNVGPAHLEALIDVAGVA-AEKSRLFAAL 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+ D K + G + + + + ++G Sbjct: 215 RPGGVALASMDYPELWAAAKAVRPDVRGMSVKGGSAPYRAKYLGALSEGRGRFFLRLDGL 274 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + + PL G N L AA +G + LE + RF G Sbjct: 275 ELEVVTPLTGGHFAENILAAAASARLLGATEEQIATGLESAVMPEQRF---FCRRHGCYT 331 Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADI 412 +D Y S+ + G+ +V+ G + + + +G+ A Sbjct: 332 LIDDTYNANPLSMRRAIATAAEAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAK 391 Query: 413 AIV 415 A+ Sbjct: 392 AVF 394 >gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] Length = 466 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 168/486 (34%), Gaps = 52/486 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L+ D + Q + + R + VS DSR ++ G +FV + G K+DGH +I Sbjct: 1 MK--NLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRKFLSLFASRLYGKHP 114 A+ +GA + D + + V NT L A K P Sbjct: 59 RSALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFP 118 Query: 115 E-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 + +TG+SGK++ + + G ++ T P+ + + Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSE----------TGLPLSVFEV 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 V + + G + + G TN+G HI +QQA K ++ Sbjct: 169 RDE---HEVGIFELGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQI 225 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + D + ++ LK + I +K Sbjct: 226 FSFFDKDCM---GFVPDCPFTDFLQAVPLGKVVCYENTT------LKNIKKIESKGMYGS 276 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ KD + FPL G + NA L +G+ + LE + + GR +F+ + Sbjct: 277 TIFYKDEEICFPLAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQFMQGDV 336 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG----GDRDQGKRPIMGKIALD 408 Y +S+ L G+ V G + + I + A Sbjct: 337 DCLFDC--YNANPDSMSAALAVFSETKVQGKKAAVLGSMLELGKESAAAHKKICAQAAAS 394 Query: 409 LADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLV 463 D + D+ ++ + G F + ++A+ A+ E L++ D ++ Sbjct: 395 DIDFIYLFGKEIGDSGKNINWN--------GKTVFYFDESEMDALGKALDENLHRGDFVL 446 Query: 464 V-AGKG 468 + A +G Sbjct: 447 LKASRG 452 >gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate [Bacillus cereus Q1] gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus Q1] Length = 451 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 181/474 (38%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+I+ ++ + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 1 MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + + Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + N L ++ V + Sbjct: 215 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ + I Sbjct: 270 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 329 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + +S++ ++ ++ + + ++V G G + + +GK+ + + + T Sbjct: 330 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 389 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ K+DV+++ KG Sbjct: 390 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 437 >gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] Length = 452 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 86/429 (20%), Positives = 154/429 (35%), Gaps = 31/429 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L ++L + + IN VS+D+R I+ G +FVA+VG + D H F A+ Sbjct: 1 MISLMLSQLADELDA-QLVGNDAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNAVE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS A Q TP L+V +T+ L ++ +A+TG+ G Sbjct: 60 AGATALLVSRALDTQ---------TPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I G F G + +TP + Sbjct: 111 KTTVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPE-------------DDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +K N+ H++ + A + L S AI Sbjct: 158 ELGANHIGEIAYTTQLVKPDVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLAPGSAAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304 + D + + + + SV K+ ++ + + F+ Sbjct: 217 VNLDSNGGEHWQEVLADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G+ V NAL A L +G +V L L V GR E + + I Y Sbjct: 277 GIIGQHNVANALAATALAFELGASIEMVQSGLRHLAKVKGRVESIALTEKITLIDDSYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + +++ + + R +++ GD +G+ A ++T Sbjct: 337 SVPAMKAAADLLSSFKGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT----YG 392 Query: 423 EDPEKIRAE 431 D I + Sbjct: 393 ADARAISQQ 401 >gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] Length = 460 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 181/474 (38%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+I+ ++ + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + + Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 164 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 223 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + N L ++ V + Sbjct: 224 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ + I Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 338 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + +S++ ++ ++ + + ++V G G + + +GK+ + + + T Sbjct: 339 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 398 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ K+DV+++ KG Sbjct: 399 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 446 >gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella kingae ATCC 23330] Length = 454 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 77/410 (18%), Positives = 140/410 (34%), Gaps = 26/410 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I P + IN + +DSR Q+G +FVA++G D H F+ Sbjct: 1 MKTLDL------NFICTALNLPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+GA A+V + L VD+T L A + + Sbjct: 55 ADVLAKGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + + + + + ++ P+ L + S Sbjct: 106 TGSSGKTTVKEMLTTVLREKFGADAVLATAGNFNNHI-------GLPLTLL---NLRESH 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + G + N R HI + + + Sbjct: 156 RYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQ 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ DDA + G + + G+ IH + V + + + Sbjct: 216 DGLAILPIDDANLPIFQAACKDLGLQTQTFGFAQGDIHAENVKLQPLVSEFDLVQGSERV 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G+ V NA AA L +A G+ + L + GR + + Sbjct: 276 HITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLANFANIKGRLQVKHGIKNSTILDD 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 Y +S++ L + + + + V G G+ + + P M + A Sbjct: 336 TYNANPDSMKAALDVLAKMPAP-HVFVMGDMGELGENEAPKMHEEIGIYA 384 >gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] Length = 457 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 161/474 (33%), Gaps = 46/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ ++ +++ V+ DSR ++ ++FVAI G + DGH FI Sbjct: 1 MK--NMSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + GA + +S ++V + + L A ++ + Sbjct: 59 PQVMENGALCALSEKDLGDVPYS--------YILVKSCEQALKDLAEYYRLALDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + ++ G +N + P I+ + ++ Sbjct: 111 TGSVGKTSTKEMIASVLEQKYSVLKTEGN--------FNNEIGLPLTIFNIREEHEVAVL 162 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + E + HRL + + TN+G H++ + AK +F+ + Sbjct: 163 EMGINEFE------EMHRLAKVARPDICVITNIGFCHLENLIDRDGVLRAKTEMFDFMRD 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + D ++ + + + + + Sbjct: 217 GAQIIL--NGDDDKLITVQNVKGIIPVFFGLTERHDYYATDVHSLGLKGTSCILHLPNGT 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + LPG VYNAL A + ++G+ + + + +E L V GR + T+ Sbjct: 275 VNANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNNLIETDDFLIIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S++ L + GR + + G G+ ++ +G A I Sbjct: 335 C-YNANPVSMKASLDVLSN-ALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICC 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVV 464 + E ++G + + E + ++ K D ++V Sbjct: 393 --------IGTLAQEFVNGANSVTSKSETLYFATKEEFLSQMHSIVKKGDTILV 438 >gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 91/472 (19%), Positives = 156/472 (33%), Gaps = 40/472 (8%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + P+ I+ +S DSR +Q G F AI G DGH F AI Sbjct: 3 LLWTSEALVTAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +VV+ + R PI+VV++ L + I+AVTG++GK Sbjct: 63 GAGVLVVAEG----KLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ + G + P+ LA+ + Sbjct: 119 TTTKEALRHVLSAVGKVHASAQSFNNHWGV----------PLTLARM-----PVDCDYAV 163 Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 E + D+ R + ++ T + H+ + + AK +FE + P A Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDG--A 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301 I D +++ + +A G+ L K + + + G D Sbjct: 222 AILNRDDARFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMI 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV 360 PG V N L G + D V+ L L GR + G + Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLI 341 Query: 361 DYAHTSNSLEMIL-----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 D ++ +N M GR I V G + + LAD+ + Sbjct: 342 DESYNANPASMAAAMALLNTTPVAGEGRRIAVLGDMLELGDHSAKLHAA----LADLIVG 397 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVV 464 T + + +P I+ R A + L DV+++ Sbjct: 398 TGTQTVFLGGPE-MKALAEALPAEIQTEYRAGAAELKPVLLAALKPGDVVMI 448 >gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM 20098] gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM 20098] Length = 491 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 85/477 (17%), Positives = 166/477 (34%), Gaps = 43/477 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKEDG 56 K L+ + L + + I ++ D+R + G +FV G DG Sbjct: 33 KRHHLLREIITPDRWTLDVADLPGANTPIPTITYDTRKVSQGTMLFV--KGRFKPEFLDG 90 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +G A V +S + + ++V++ K +SL ++ YG P++ Sbjct: 91 ID------TKGLYAYVAEEDHSDRTHAIG-------VIVNDVHKAMSLLSASFYG-LPQH 136 Query: 117 ILAVTGTSGK------SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 L V G +G + +A + + + F ++LTTP + Sbjct: 137 ELTVVGITGTKGKTTTAFLAQAILNEYSQGRCALFSSVNLCLDGHTMLPSKLTTPESLDS 196 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228 + + G+ ++ +E SS +R+ G+ +F N+ DHI H T + Y Sbjct: 197 FRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTLEDYLY 256 Query: 229 AKMRLFEELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 K ++ + + +DA +V + G + Sbjct: 257 CKRQIIANSRTLVLGSECRHIGLLREDAAVHQVPVSEFGVLDAMPRDGADDQTCAWPADG 316 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + + +F ++ A +A + D + + VP Sbjct: 317 THRAYRMRLDGNDLGEFSLDLDGDFNYKNALAAIAIAHAAGVPADCEAL--RALEHTKVP 374 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRP 400 GR VDYAH +S+ +L + T + RI +V G G++ +R Sbjct: 375 GRMMQYRDERTSTIAIVDYAHNYDSVVKLLDYVSTRYGERNPRITLVAGSAGNKAIDRRE 434 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAI 453 + K A D + T ++ +E E I ++ + +R +AI +A+ Sbjct: 435 GIVKAAQDRISRFVFTAEDTDTEPYEDICRDMADHVTNSHVTSDTIIDRTQAIASAL 491 >gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 460 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 76/474 (16%), Positives = 171/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E++N + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVVNGEGLQESFHL-IEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + Sbjct: 117 TGSNGKTTVKDIIGSILSSTYKVHKTKGNFNSQ----------IGLPLTILEMER----- 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R AK +L + Sbjct: 162 NTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLR 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E+ +Y D ++ R + + L ++ V + Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHSKI 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + E L+++++ RF+F+ + I Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITKMRFQFLTAKTGFTIIND 338 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + ++V G G + + +GK+ + + + T Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFT 398 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ K+DV+++ KG Sbjct: 399 ----YGELAKIVAEEARKNYHTGKIKSFDNKAEIAEEVLKVITKKDVVLL--KG 446 >gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] Length = 492 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 84/487 (17%), Positives = 160/487 (32%), Gaps = 50/487 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I EL +S + + V++DSR + AG +FVA G DGH F+PQ Sbjct: 1 MIPITAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVPQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENIL 118 A A GA + + P +VV + + + AS + + HP ++ Sbjct: 61 AAAAGAVLNLTEREVLDDTGAPY-----PSVVVADVVQAMGALASHVLQRLRAAHPVTVV 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG+ GK++ + I G + + + + P ++ A+ + Sbjct: 116 AVTGSVGKTTTKDLLHGIFAAEGPTV--------APRNSYNGEVGVPLTVFTAEQDTE-- 165 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + A+ G ++ + ++ G+ +G H + A E L Sbjct: 166 ---FFVVEMGATHIGNIRYLCEMVRPDVGAVLCVGSAHAGEFGGVENIARA-KGEMVECL 221 Query: 239 PKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQV 291 E A++ DDA + + +R G R G++ + + V + Sbjct: 222 APEGTAVLNDDDARVRPMRERTTARVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSF 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--VVPGRFEFV 349 T+ + L+AA + + + R E Sbjct: 282 TLHFPDGSAFPVHSRLIGVHHVTNLLAAASVAWAAGVAPERIAAGLEGTGARSRWRMERT 341 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-------RTITSGRIIVVFGCG---GDRDQGKR 399 + + Y S++ L+ + R I V G GD Sbjct: 342 ERSDGVTVVNDAYNANPQSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAH 401 Query: 400 PIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLN 457 +G++ + L + D R P A + + + A +L Sbjct: 402 ADLGQLLVRLNISHVVAVGDLAR---PVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLR 458 Query: 458 KQDVLVV 464 D++++ Sbjct: 459 PGDIVLL 465 >gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. 1-1C] Length = 472 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 88/448 (19%), Positives = 163/448 (36%), Gaps = 41/448 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS DSR + AG IF I G+ DGH F A AQGA +VV+ + T P Sbjct: 28 GVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHAYAQGAGVLVVAQNRLDEMKKITA----P 83 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++VV + + L A + I+A+TG+ GK++ ++Q + G + + Sbjct: 84 LIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKTTTKEALKQALETVGKVHANLASLN 143 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSF 209 P+ LA+ + E + ++ R + + Sbjct: 144 NCWGV----------PLTLARM-----PIDSDYGIFEIGMNHKNEIRPLVKLVCPHVVLI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+++ + + +AK +FE L K A++ ADD + ++K+A G + + Sbjct: 189 TRIAAGHMEFFKDLEEIADAKAEIFEG-LDKNGIALLNADDHFFSYLLKKAKQCGVKEIR 247 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +K+V + N + + KD PG+ V N L C + Sbjct: 248 SFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVLAACDTVCA 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILK---NIRTIT 380 D A + L + + GR I Y S+ L Sbjct: 308 DLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDLLATGPIGV 367 Query: 381 SGRIIVVFGCG---GDRDQG-KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 G+ I + G GD + R ++ I + AD+ + ++ + ++ + Sbjct: 368 GGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLV-----GKEMGVLARDLSAYV 422 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 N E ++ D++++ Sbjct: 423 T-VYHAENIEEIFPLVFSEISNGDLIMI 449 >gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] Length = 452 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 152/394 (38%), Gaps = 25/394 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + ++ Q + I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P ++V +TR+ A+ + + P ++A+TG+SGK+SV Sbjct: 69 RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + T + + A+ G Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S V + + T+ + D L PLPG + N Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D A V L +L VPGR + + Y S+ ++ Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R +VV G +G+ A Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAA 379 >gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Mississippi] Length = 456 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 79/445 (17%), Positives = 162/445 (36%), Gaps = 38/445 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S P+ Sbjct: 20 ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 73 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A+ ++A+TG++GK++ + + G + + Sbjct: 74 VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 133 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + +S G + TN+ Sbjct: 134 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 180 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ ++ + AK+ +F + + A++ D Y ++ A + R++S G Sbjct: 181 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 238 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G ++ VT G++ + Y+ + A + A ID Sbjct: 239 VGAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLTQA 298 Query: 333 LEHLEKLHVVP-GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---RIIVV 387 +E+ + + R + D Y S+ ++N+ + R + + Sbjct: 299 RGAMEEFVPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVAI 358 Query: 388 FGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 G + G R ++ +I D+ T + + + + G Sbjct: 359 LGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HFA 412 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA+ ++ D ++V KG Sbjct: 413 DHGEALAHLERIIKPGDGVLV--KG 435 >gi|309798583|ref|ZP_07692858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] gi|308117819|gb|EFO55220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] Length = 189 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 5/191 (2%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G F NA+ A C+ +G + + + VPGR E + + G ++++DYAH Sbjct: 1 MIGHFNQENAIAAGLACLRLGASLEDIKKGIAS-TRVPGRMEVLTQKN-GAKVFIDYAHN 58 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424 +SL+ ++ + T +G+I +V G G++ + +R G + +I +T D+P ED Sbjct: 59 GDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYED 118 Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKM 482 P I EI I +E +R +AI+ A+ + +++ D +++AGKG + I+ ++ Sbjct: 119 PMAIADEISSYIHHPVEKIADREQAIKAAMSVTDQELDAVIIAGKGADCYQIIQGKKEDY 178 Query: 483 SVDCDIIREIL 493 D I L Sbjct: 179 PGDAAIAERYL 189 >gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] Length = 447 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 76/468 (16%), Positives = 164/468 (35%), Gaps = 44/468 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++I +L++ + ++N + D+R IQ G +++ +VG K DGH +I Sbjct: 1 MFIREIIEATNGKLLSG-------HLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA +GA A + + + +++V++T K L A + ++ + Sbjct: 53 PQAFNKGAAATLTNRPIEDDSHN--------VILVEDTMKALGDLARYVRVHSHAKVIGI 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G + + + + + Sbjct: 105 TGSAGKTSTKDMIASVISQQYTTLKTQGNFNNNIGLPLTILRYNGEEVMVIEMGMNHLEE 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + TN+G HI +++ AKM + + Sbjct: 165 IDYLTKIALPDIA--------------AITNIGTAHIGELGSRENILQAKMEIVHGMNHG 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + + + + + V G+D+ Sbjct: 211 TLVVNNDND-----LLSTVHPEGISLKTIGIESDADLKATDIILNEDMSSFRVKVNGQDY 265 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG ++NAL+A + + + I + +E + R + + + I Sbjct: 266 AVRVYVPGVHFIFNALIAIQIGLLLDIPMEKCIRGIETFELTKNRNDILTLDRHIRVIDG 325 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y +S++ + + T R I V G GD ++ +G L I+T Sbjct: 326 TYNANLDSMKSSIDVLSGYTD-RKIAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTV 384 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV 464 I E+ PG + ++ ++ L + DV++V Sbjct: 385 ----GPAARYISDEVNKAKPGIAYHFDDNASLSAYLQECLEENDVVLV 428 >gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum EA 2018] Length = 455 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 76/464 (16%), Positives = 174/464 (37%), Gaps = 37/464 (7%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L + + + +N + ++ N+VS D+R + G IF+AI G +G+ FI A+ Sbjct: 3 NLTFNEIAKAVNG-KVILRGSKDV-FNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAV 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA +V + +D + + + IL+V++T+K L A ++A+TG++ Sbjct: 61 QKGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGST 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + + G +N + P S V Sbjct: 118 GKTSTKDITASVLRSKFRVFKTSGN--------FNNEIGLP-----LMIFKLDKSYEVAV 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + + + + TN+G HI+ ++++ AK+ + + Sbjct: 165 LEMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLI 224 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + +D + K + + + + ++ + +C + + E + Sbjct: 225 VNGDND----LLKKHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGE----KLVL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +PG+ + NA+++ + +G+ + + L+ L + R + V + Y Sbjct: 277 NMPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV-NGENIVIVDDSYNA 335 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420 + +S+ + + + R I V G G++ +G A + D +V Sbjct: 336 SPDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVG--- 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + K + F E E ++ + K D+ ++ Sbjct: 393 ---EFSKAYLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 433 >gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] Length = 427 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 139/384 (36%), Gaps = 25/384 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R + AG +FVA+ G + DGH F V++ S + P Sbjct: 1 MTIDTRKVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGAPQ 51 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV +TR L FA+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 52 LVVKDTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNN 111 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +P + + A+ G + D + + NL Sbjct: 112 DIGVPLTLLRLSPE-------------HDFAVIELGANHVGEIAYTTDLSRPESALVNNL 158 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + AK +F L + I + + + G Sbjct: 159 AAAHLEGFGSLAGVAKAKGEIFAGLPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRGA 218 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + V T+ PLPG + NAL A L +++G D A V Sbjct: 219 EDIDFYASDVRITPQATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAV 278 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L +L VPGR + ++ + Y S+ + + + R++VV Sbjct: 279 RQGLAQLQAVPGRLFPIQLSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVLVVGDMAE 338 Query: 391 GGDRDQGKRPIMGKIALD-LADIA 413 GD +G+ A D Sbjct: 339 LGDTAVDCHRQVGEAARQAGVDKV 362 >gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 485 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 95/488 (19%), Positives = 160/488 (32%), Gaps = 64/488 (13%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + P+ I+ +S DSR +Q G F AI G DGH F AI Sbjct: 3 LLWTSEALVAAMDGRPLGPMPDGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +VV+ + R PI+VV++ L + I+AVTG++GK Sbjct: 63 GAGVLVVAEG----KLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ + Q G + P+ LA+ + Sbjct: 119 TTTKEALRHVLQAVGKVHASAQSFNNHWGV----------PLTLARMPDD-----CDYAV 163 Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 E + D+ R + ++ T + H+ + + AK +FE L P+ A Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEG--A 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301 + D +++ + +A G+ L K + +T + G + Sbjct: 222 AVLNRDDARFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVT 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----- 356 PG V N L G +G D V L L GR + GG Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSH 341 Query: 357 ----RIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMGKIAL 407 +D ++ +N M + GR I V G + + Sbjct: 342 PGGLITLIDESYNANPASMAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAA--- 398 Query: 408 DLADIAIVTDDNPRS----------ED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 LAD+ + T E P I+ E G+ + L Sbjct: 399 -LADLIVGTGTQTVFLGGPEMRALAEALPADIKTEYRAGVEELKPVL---------LAAL 448 Query: 457 NKQDVLVV 464 DV+++ Sbjct: 449 KPGDVVMI 456 >gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 468 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 78/475 (16%), Positives = 157/475 (33%), Gaps = 39/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+Q E+ + + W + + V+ DSR +QAG +F+ ++G DGH Sbjct: 7 MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 59 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 +I AI GA A + D + + + P+++V +T L K ++ Sbjct: 60 YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + T + + + Sbjct: 115 AVTGSNGKTTTKDMIASVLSTQFNVTKTHANFNNQIGVPV-----TLLSMEPNTEVVVVE 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++ S ++ T +G HI++ T+ +AKM + L Sbjct: 170 MGMDHFGELDFLSRL--------VQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 221 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + +RA + G Q + Sbjct: 222 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 277 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + P+ G + V NAL A + I A + + R E++ + Sbjct: 278 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 337 Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +L + G+ I V G + + + +A +L D A + Sbjct: 338 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGEQSDALHMSLASEL-DPATIAS 396 Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + G + + + + I ++ D +++ KG Sbjct: 397 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 449 >gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] Length = 452 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 76/409 (18%), Positives = 147/409 (35%), Gaps = 29/409 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L++L ++ + + + +VS+DSR + +F+A+ G K +GH F+ + Sbjct: 2 LKELKLSQIADICGGT----LFGEDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDK 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI QGA ++V + P +VV NT A L + ++TG Sbjct: 58 AIDQGASGVLVDVDSGVSLE--------PRIVVHNTLLAYHDIARFLRDAFQGRVFSITG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+SV ++ Q + G + + T I + + + Sbjct: 110 SNGKTSVKDWLAQSLEDFGCVLKTQSNFNNHIGVPK-----TLIQIENNHQFAVVEAGTS 164 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + S + + TN H++ + +A K L Sbjct: 165 FPGEISILSKTIHADVV--------IVTNASGSHLEGFGSTKAIAEEKGDLITYSSLYSK 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + + DD + + S+ +++ + ++ + + Sbjct: 217 VILNF-DDPFFEYWKGLTGKREFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSLV 275 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P PG+ QVYNAL G + + + L + K V GR EF T + I Y Sbjct: 276 TIPAPGKHQVYNALAVIGALMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCY 335 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALD 408 + S+E + + + +V G GD+++ +GK A + Sbjct: 336 NASPTSVEAAIDVLSMQKPIKKWLVLGALGELGDQEESIHRGLGKYAAE 384 >gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] Length = 455 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 82/413 (19%), Positives = 135/413 (32%), Gaps = 27/413 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + L + VS DSR + AG +FVA+ G + DGH ++ A Sbjct: 1 MLKPMSLSQLVPLLNGQQIGADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADVKA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A +V + + P L V + R L + + + ++A+TG+SG Sbjct: 61 KGAVAALVEREVA--------DVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + I + GL G + +P+ L + + + Sbjct: 113 KTTVKEMLASILRTRGLVHATRGNLN----------NDLGAPLTLLEIAAE---HSAAVI 159 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + AS G + G+ N E L + AI Sbjct: 160 ELGASRIG-EIRYTVGLTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAI 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD RA + H + + G+ Sbjct: 219 LNLDDKAFATWKARAGAHKVISFARSDARADFHASAIGRDARGCPSFQLHGAGEVAQVQL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + GE V NAL AA A+G+ A + L + V GR S I Y Sbjct: 279 NVLGEHNVSNALAAAAAAHAVGLSLAGIAAGLAAVQPVKGRTVAQIAPSGVRVIDDSYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414 S+ + + SGR ++V G G+ Q +G A D Sbjct: 339 NPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390 >gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 460 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 172/472 (36%), Gaps = 38/472 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L E++N + ++ V DS+ I G +FV I+ K DGH ++ + Sbjct: 7 LIQLQLNKLEEIVNGEG-LQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKE 64 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +GA A + +Y PI+ VD+T L A ++ +TG Sbjct: 65 AMEKGAAASLWKKSYGDP------PKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITG 118 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+ V + I + G ++ P+ + + Sbjct: 119 SNGKTMVKDIISTILSTTYRVHKTKGNLNSQ----------IGLPLTILEMKQD---TEF 165 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 166 LILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGL 225 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + ++ + N L ++ V + + Sbjct: 226 FLYN-----GDEPLLSQNINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQY 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G+ ++N +V + + + E L+++++ RF+F+ + I + Sbjct: 281 DVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAW 340 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 + +S++ ++ ++ + + I+V G G + + +G++ + + + T Sbjct: 341 NASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT-- 398 Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ + ++++ K+DV+++ KG Sbjct: 399 --YGELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLL--KG 446 >gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 81/484 (16%), Positives = 161/484 (33%), Gaps = 50/484 (10%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++L+ L++ ++ + +S DSR ++ +FV IVG + D H F+ QA Sbjct: 7 KELLEATGGNLLHG-------QEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNT-------------PILVVDNTRKFLSLFASRLY 110 IA GA + S + +D A +R + V +T+K L S Sbjct: 60 IASGAAVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCR 119 Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 ++ +TG+ GK++ + + G +++ PI + Sbjct: 120 KSLSLPLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGV----------PITI 169 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 A+ S + + + S G + ++ TN+G HI+ +Q+ K Sbjct: 170 AEI---PQSAEIGVIELGMSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEK 226 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + E + P E + DD V+ + + + Sbjct: 227 LHIQEGM-PPEGILFLNGDDPLLASVVPKEGRKKVLYGLGRDCD--YRAEDLHLEEGYPV 283 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T + G V NA+ A + G+ L + GR + Sbjct: 284 FTAVHGDCRVRVRLKVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIFE 343 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL 407 I Y + S++ L+ + ++ R I V + +G Sbjct: 344 WGGV-TVIDDSYNASPVSMKAGLEVLDSVKGERKIAVLADMKELGPDTERFHAEIGAYIG 402 Query: 408 DLA-DIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + D+ ++ E I + + IE + +A + E + + D ++ Sbjct: 403 EHPLDMVLL-----LGELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILF 457 Query: 465 AGKG 468 KG Sbjct: 458 --KG 459 >gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC 27064] gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 479 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 89/475 (18%), Positives = 160/475 (33%), Gaps = 42/475 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V +DSR + G +F A G + DGH F + Sbjct: 1 MIALSLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAER 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A GA A++ + P +VVD+ L A + + +A+TG Sbjct: 61 AVADGAVAVLATRPV-----------GVPAIVVDDVTAALGALARHVVERLGTTTVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +R G + + G +N + P AL S Sbjct: 110 SAGKTSTKDLIAQLLERKGPTVYPEGNL--------NNEIGLP-----LTALRADESTEH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPK 240 + + A G ++ + G N+G H+ +++ AK + E + Sbjct: 157 LVLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ ADD + + +R ++ + T+ Sbjct: 217 GGVAVLNADDPLVRAMAERTRARVVLFGEHSSADIRAANVRLTRQG-RPAFTLHTPTGCS 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGLSADEIALALSEAGTLSRWRMEVTERPDGVTIVN 335 Query: 360 VDYAHTSNSLEMILKNIR------TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ + GR V G GD + +G++A+ L Sbjct: 336 DAYNANPESMRAALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVRLN 395 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 396 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 449 >gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] Length = 493 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 93/494 (18%), Positives = 171/494 (34%), Gaps = 50/494 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +++Y P Q+ P QW+E E DSR ++ G +FVA+ G + +GH F+P Sbjct: 4 LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63 Query: 63 AIAQGAEAIVVSS---------------------AYSLQDFSATIRSNTPILVVDNTRKF 101 IA+GA +VS + + ++ VD+ Sbjct: 64 VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123 Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 L A + ++ +TG+ GK+S + + + + S + ++ Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCT--------LKSKRSFNSE 175 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 T P+ + ++ + + D R G TN+G H++ + Sbjct: 176 ATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLAR-----PQIGLVTNVGPTHLERLK 230 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 +Q+A + AK L EEL + D M+ NA + + Sbjct: 231 SQEAIWYAKAELVEELPRDGWAVL--NADDPLVWAMRDMTNARVFSYGLAPHATLWANQV 288 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + + + + PL G +Y AL A + + +G++ ++ L Sbjct: 289 ESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIAGLTD-PA 347 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGK 398 R V I Y S L + T GR + + G G ++ Sbjct: 348 AQARLRVVAGQHATTLIDDTYNAAPISTLAALDLLGA-TPGRRVAILGDMLELGSAEEEG 406 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNR--IEAIRTAIEM 455 +G+ A +AD+ + + I G+P EAI + Sbjct: 407 HRQVGQRAAQVADLLVTV-----GQRAIWIAEAARQAGMPSAHILVCMTNAEAIASVRPR 461 Query: 456 LNKQD-VLVVAGKG 468 L D +L+ A +G Sbjct: 462 LMPGDHILLKASRG 475 >gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus coahuilensis m4-4] Length = 456 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 160/472 (33%), Gaps = 38/472 (8%) Query: 6 LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + ++++ ++ V D+R + AG +FV G DGH F+ Sbjct: 1 MIKRTIGQIATIVGALNDVSLFKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDV 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A + P++VV+++ L + + ++ VTG+ Sbjct: 61 LEKGAGAAFWEKSAG------PAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + G +N + P I LS V Sbjct: 115 NGKTTTKDILFALLSTKYRVHKTEGN--------YNNHIGLPLTI-----LSLPEDSEVA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + A TN+G H+ +++ AK + E L + Sbjct: 162 VLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREGISKAKFEIVEGLKSEGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + +R G + G + T SV D +F Sbjct: 222 VYNG----DEPLLQERVKGYGGSKETFGRHSSNTMYP-TKLAPSGFGTTFSVNVSDEEFH 276 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ GE V N + A + G+ + + L L + R E I Y Sbjct: 277 LPILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLTGMRLEVSTGAKGETIINDAYN 336 Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +S + + ++TI T+G+ V G ++ +G D D + Sbjct: 337 ASPSSTKAAIDLLQTISTTGKRYFVVSDMLELGPNEEAFHHEVGTYVTDDIDCVL--TYG 394 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIEA-IRTAIEMLNKQDVLVV-AGKG 468 P S I +P + A I ++ D ++V A +G Sbjct: 395 PLS---SFIAEGAKETLPEDRVIHFDEKSALIAYLKVVVKSDDTVLVKASRG 443 >gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] Length = 477 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 88/467 (18%), Positives = 165/467 (35%), Gaps = 36/467 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ++I + P+ I +S DSR ++AG F AI G++ DGH + A+A GA Sbjct: 6 TVADMIAITAGRPVGNLPTGITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFAVANGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ A R P++VV++ L A + I+AVTG+ GK++ Sbjct: 66 LLVVAEG----KLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q SG + + P+ LA+ + + Sbjct: 122 KEMLRQALAPSGRVHAAVASFNNHWGV----------PLTLARMPAD---TEFGVFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G + + ++ T + H+ + + +AK +FE L I+ D Sbjct: 169 NHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEG-LEDGGFVILNRD 227 Query: 250 DAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +A +++ + A + G + + L + + + G+ + +P Sbjct: 228 NAQFEQLEEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIP 287 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAH 364 G NA+ G G + E L L V GR + T G + +D Y Sbjct: 288 GRHIADNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNA 347 Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGC---GGDRDQGKRPIM-GKIALDLADIAIVTD 417 S+ + + GR + V G G+ + G + + + Sbjct: 348 NPASMRAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWL-- 405 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E +R + + I E A++ + D L+V Sbjct: 406 ---AGEAMAALRDALPDSVT-VIWFPTTAELADFALQWVQPGDALMV 448 >gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] Length = 423 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 146/411 (35%), Gaps = 47/411 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P++ + ++ DSR +Q G +FVAI GN DGH F+ A GA A +V ++ Sbjct: 2 PVKLSDLFGHKFVIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN 61 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 ++V NT +FL A + K I+ +TG++GK+S V + Sbjct: 62 ----------QIIVPNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEI 111 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ++ + P I ++ + V + + G ++ Sbjct: 112 SAFKNEGNLNS--------EIGLPLSI-----INSYRGESVLILEMAQRVVGDIEYLCKI 158 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G N+G H+ + + F K ++ E A++ DD + Sbjct: 159 FPPDIGVLLNVGSAHVGVAGSVENIFKGKWQIVENSKE----ALVNFDDERMRC------ 208 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G G L K + +T EG++F + P + ++A + Sbjct: 209 ---TKCRYFGTTGGDYILSKREYNGSSTILTFEYEGEEFYYQLP---GYWTKPMALSALV 262 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 I ++ L + P + F G + D Y + S + ++ I Sbjct: 263 AFGIADMIDVLFNPLNLANYKPLKGRFNVHRFSKGYLIDDTYNASYESFKAGIEEILENF 322 Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + G G+ + ++ L D +V D + E+ + I Sbjct: 323 PKPRYAIVGAMKELGEYSTYYHKKLSELLEQL-DGVVVYD---KEEESKDI 369 >gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] Length = 456 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 138/424 (32%), Gaps = 33/424 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I P + V +DSR Q G +FVA+ G D H F+ Sbjct: 5 MKTLDL------NFICATLNLPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P +A+GA AIV S + V +T L A+ + + Sbjct: 59 PDVLAKGARAIVSRSDLAGVAG---------CFFVPDTLHALQQMAAAWRKAVNPFVFGI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++V + + + + + ++ T + + + Sbjct: 110 TGSSGKTTVKEMLAAVLRAKFGADAVLATAGNFNNHIGLPL--TLLNLRGHHRYAVIEMG 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A R+ N R HI A + LP+ Sbjct: 168 MNHFGELAA------LTRIAA--PDTALVNNAMRAHIGCGFNGVADIARAKSEIYQGLPE 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ A+DA G + L+ G + IH + + + + Sbjct: 220 NGVALLPAEDANLPVFQAA--CNGLKTLTFGAEQGDIHAENIDLQPLSSTFDLVYGTERV 277 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P G V NA AA L + G+ A + L + GR + + Sbjct: 278 RVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGLAAFGNIKGRLQQKRGIRNALILDD 337 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415 Y +S++ L + + R + V G G+ + + P M + A + A Sbjct: 338 TYNANPDSMKAALDVLAKQPAPR-VFVMGDMGELGEAEAPKMHEEIGVYARELGIEYAYF 396 Query: 416 TDDN 419 DN Sbjct: 397 VGDN 400 >gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] Length = 464 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 141/387 (36%), Gaps = 28/387 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + +L L + E +S+D+R +F + G K D H ++ +AI Sbjct: 1 MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV ++ N P ++V++TR L A L + +A+TG+SG Sbjct: 61 QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111 Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K++V +I Q+ + G + TP Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239 T V + A+ G + + + A N+ H++ + AK ++ + Sbjct: 159 FTVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGG 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K + + + KE+ + C + V N + T+ + Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGE 278 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P GE V NAL A L +A+G D V LE+ V GR + I Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV 386 Y +S++ + ++ + RI V Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFV 365 >gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 463 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 147/389 (37%), Gaps = 35/389 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFI 60 L+D+ +LI KIN +S DSR I + +F+AI G K +G FI Sbjct: 6 LKDIALILNAKLIGN---------NCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 ++I GA A++ + ++ N P L+V NT L + + I+A+ Sbjct: 57 KESIKNGAVAVINARKVNI---------NIPHLIVKNTIISLLRLSKWIRENSKAKIIAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK+SV + I S + ++ P+ L + Sbjct: 108 TGSSGKTSVKEIIFNILN----------TFSNTIATKKNFNNNIGVPLTLL---RLNKNH 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-- 238 + V + G + + IK N+ H+ ++ AK +F + Sbjct: 155 NFAIIEVGGNKFGEIKTSSNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGK 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + Y + + + K N + + K+ +LK + + + +IS + + Sbjct: 215 KNGIIVLNYNSNDWKEWKKKLKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKE 274 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + PL G ++NA+ A + +G + L+K + R + N I Sbjct: 275 ECEVSLPLIGYHNLFNAMAAIAISFLVGASMESIKYGLKKSYPFKRRLFPIFLNKNKIII 334 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387 Y S+ + + + +II++ Sbjct: 335 DDSYNANVGSMISAISVLNNMPGYKIIII 363 >gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] Length = 454 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 35/421 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L K EL N + ++ + + +S+D+R IQ +F+A+ G+ DG +I Sbjct: 1 MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA VV+ Y + + P++ VDNT++F+ A ++A+ Sbjct: 57 EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + T Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + G + + TN+G H+ +T++ AK E L + Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I+ DD +EV + + ++ + A +I+ D Sbjct: 216 DGIFILNNDDPILREVKQEYKLPEKNITFGIKPDSDYRMEMIKADETGSTFSIN----DH 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L G Q+YNA ++ + +G+D + + + L+ + + R E + + + Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330 Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y SL R I V G GD + +GK I + D + Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390 Query: 416 T 416 T Sbjct: 391 T 391 >gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 450 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 86/431 (19%), Positives = 163/431 (37%), Gaps = 40/431 (9%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E+ L +R+ I S +S+ I +F+ + GNK DGH FI +AI++GA Sbjct: 4 WLSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGA 63 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKS 127 + + + + + P L V++T K + + A + ++ +TG+ GK+ Sbjct: 64 ISFITQKDVNTE-------KSCPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + +V + S G + L P + +A + + Sbjct: 117 TTKEYVFNVLSNKFRSYKNEGNFNNHIGLPYSI-LNIPDEVKVAT------------LEM 163 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S+ G K G TN+G HI+ +T+ F AK + + + I Sbjct: 164 GMSNFGEISFLSKIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDGMPNDGILIINN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +D + H +V++VG + K + + K F F Sbjct: 224 DND----ILYSHRHELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVSNHKYFIESFN-- 277 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +YN+L A + +GI+ + + + K + RFE + + + Y +++ Sbjct: 278 -FHDIYNSLFAIAVGEILGIEKEAIEKGILKKCGLRRRFEVIKKDGL-TVVDDSYNASTH 335 Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSE 423 S+ + + SG+ I+V G G+ + + +GK I D+ I T + Sbjct: 336 SMMSAINGVCGF-SGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICT-----GK 389 Query: 424 DPEKIRAEIIH 434 D I E+ Sbjct: 390 DAFYIFDEVRK 400 >gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] Length = 459 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 138/405 (34%), Gaps = 20/405 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ I + P + IN + +DSR Q+G +FVA++G D H F+ +A Sbjct: 5 IMKTLTLNFICETLNLPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLA 64 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A+V + L VD+T L A + +TG+SG Sbjct: 65 KGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + + + + + ++ P+ L + + + Sbjct: 116 KTTVKEMLATVLREKFGADAVLATAGNFNNHI-------GLPLTLL---NLRENHRYAVI 165 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + G + N R HI + + ++ AI Sbjct: 166 EMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAI 225 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DDA N + + G+ IH + + + + + P Sbjct: 226 LPIDDANLPIFQAACKNLNLQTQTFGFAQGDIHAENLVLQPLASEFDLIQGSECVHITLP 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G V NA AA L +A G+ + L + GR + + Y Sbjct: 286 VAGRHNVSNACAAAALALAGGVKLTEIARGLANFANIKGRLQVKHGIKNSTILDDTYNAN 345 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 +S++ L + + + R + V G G+ + + P M + A Sbjct: 346 PDSMKAALDVLAKMPAPR-VFVMGDMGELGENEAPKMHEEIGIYA 389 >gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] Length = 469 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 159/471 (33%), Gaps = 44/471 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+ + + + VS+DSR + G +FV + G + DGH FI A +G Sbjct: 5 TLQEIAEATGGRLIGEAQAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAGRGVT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A +++ ++ + + + V++T + L A+ + ++AVTG++GK++ Sbjct: 65 AFLMAESWLAAHG---LPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I ++G G + P+ L + V + Sbjct: 122 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTLF---RLTGRERWAVVEIGM 168 Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + RL I G TN H++ + + AK LF L + + A+ Sbjct: 169 SEFG-EIDRLAEIADPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKEGAVAVYNV 226 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD + G + +K + + T+ + + G Sbjct: 227 DDPLVSSCPTHLNVTRLTFGLRGAEVSSASIKSLGKEG--ESFTLRLPDGEEQVTLKAYG 284 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +YNAL AA A+G+ ++ LE+ RF+ I Y S Sbjct: 285 RHNIYNALAAAAAAHALGVPGQVIRLGLEEFTPYDKRFQLEEVAGV-TLIDDSYNANPAS 343 Query: 369 LEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L ++ + G R V G G + +G A + + Sbjct: 344 MAAALATLKEVAGGARTAAVLGDMLELGLGTEEAHRELGGKAAATVERLYL--------- 394 Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E+ G + E R L D ++ KG Sbjct: 395 LGGLATEVEKGALEAGLSPERIVHAATHEELARELAAWLEPGDCVLF--KG 443 >gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] Length = 453 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 84/450 (18%), Positives = 157/450 (34%), Gaps = 45/450 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I+ +F+ I G K DGH FI A +G + + Sbjct: 26 ISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGCSTSFTETE------ALDFPEG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++V++ + + A ++ ++AVTG+SGK++ + + + + G Sbjct: 80 ISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDLIASVLSQKYKTLKTQGN 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207 + Q P +E LD R + ++ Sbjct: 140 FNNEYGIPQTLFNLQPE---------------HEIAVIEMGMDHLDDIRKSIGEVRPHIS 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +TQ AK +FE + A++ DD Y ++ + Sbjct: 185 VITNIGTAHIEILKTQDNILAAKKEIFETM-GPGDIALLNGDDVYLNKIKEDEEPFSVVR 243 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + + ++V + + E F F PG VYN L A L + Sbjct: 244 VGIKGEDLSLKAEQVDSSAQGIRFVADGE----HFHFAYPGIHNVYNCLTAIWLGRYYQM 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIV 386 + L+ R + V I Y ++++ L S R + Sbjct: 300 THEEIQRGLDAFKPSGNRMDIVRVREA-TVINDSYNANPDAMKAALDMLWDMGKSCRRLA 358 Query: 387 VFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442 V G G+ + +G A + AD+ I PE G E+ Sbjct: 359 VLGDMLEMGEMAESGHLEIGAYAAEKADVLIAVG-------PESKAYIKGAGASLADERC 411 Query: 443 ---GNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + A + +++ DV+++ A +G Sbjct: 412 FWTADAEGAGKLLRKLMAPGDVILIKASRG 441 >gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] Length = 468 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 76/410 (18%), Positives = 133/410 (32%), Gaps = 27/410 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR + G +FVA+ G + D H F+ + A+GA A +VS A Sbjct: 15 GATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEVAARGASAALVSRAGV 74 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 L P L +TR L A + ++AVTG++GK++V + + Sbjct: 75 LP--------GLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVKEMIASVFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ ++ + LA A + + E + R Sbjct: 127 AAVGQDARLSTAGNFNNDIGLPLT----LLRLAPAHRLAVIELGMNHPGETGTLA----R 178 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A A ++ D + + Sbjct: 179 IAA--PTIALVNNAQREHQEFMATVEAV--ALEHASVIHALGPDGVAVFPADDRYAGIWR 234 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A V V + I + G NAL A Sbjct: 235 VAATGNRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374 +A G++ + LE V GR + + G + D Y +S+ + Sbjct: 295 TAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421 + + R++V+ G GD +G A D T + R Sbjct: 355 VLAQCAAPRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATR 404 >gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] Length = 470 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 153/474 (32%), Gaps = 38/474 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L ++ Q + ++ V DSR G +FVA+ G++ DGH F A+ Sbjct: 4 LTLDRIAKITRSRLRGSAQPTDT-VDGPVVIDSREAAPGSLFVALRGSRVDGHDFAEAAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A++ S + + + + + + +I+ VTG+S Sbjct: 63 RAGATAVLCSRPVDAPHLLVDGGDDAVVAALAKLARAV------VAELPDADIIGVTGSS 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + Q QR G + G + P+ + + Sbjct: 117 GKTTTKDLLAQTLQRIGPTVAPPGSFNNEIGH----------PLTVL---RADQTTRFIA 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKES 242 + V A G H G N+G H+ ++ A ++ + Sbjct: 164 LEVAARGVGHIAHLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGG 223 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + R + + + T+++ Sbjct: 224 VAVLNADDDAVIGMASRTAARVVSYGLAPDADVRAEGIALDERG-RPRFTLAIGEDTAPV 282 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVD 361 L G QV+NAL A + +G + L + V R E + Sbjct: 283 SLRLVGTHQVHNALAVAAVLRELGEPVTAIAAALSEAGPVSRWRMEVTERPDGVTIVNDA 342 Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTD 417 Y S+ L+ + T+ SGR V G + R +G++ + ++T Sbjct: 343 YNANPESMSAALRTLATLASGRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITV 402 Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I + + EA+ E L +D++++ KG Sbjct: 403 ----GEQAASIADGAASVADWKGETVTVADVTEAVAVLKERLRPKDIVML--KG 450 >gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 454 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 172/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 4 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHDYV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD T L A + ++ + Sbjct: 57 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V ++ I + G ++ P+ + + Sbjct: 111 TGSNGKTTVKDIIESILSSTYRVHKTKGNFNSQ----------IGLPLTILEMKR----- 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R AK +L + Sbjct: 156 NTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E+ +Y D ++ R + + L ++ V + Sbjct: 216 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ I Sbjct: 273 QYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFLTAKKGFTIIND 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + + +GK+ + + T Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 392 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E I N+ E ++++ K+DV+++ KG Sbjct: 393 ----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 440 >gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O11] Length = 452 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ +++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQRGTPIDENVSG-----PIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437 >gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] Length = 467 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 147/384 (38%), Gaps = 20/384 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ L+ + + V++D+R +F A+ GN D H ++ QAIA Sbjct: 1 MIKLTTKQVAQILNGQLIGDEYLVVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QG A+VV + N P ++V +TR L A L K +A+TG+SG Sbjct: 61 QGCIALVVEQ---------RMLINAPQIIVADTRLALGELAKWLKAKLNPKTIAITGSSG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V +I Q+ + ++ TS + LT + Sbjct: 112 KTTVKEMAAKILQKLTACADEVLYTSGNLNNDLGVPLTLL---------RLTEQHKFAVI 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A N+ H++ + AK ++ L P+ I Sbjct: 163 ELGANHLGEIAYTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGLPPEGIAII 222 Query: 246 IYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A A+ E+ R + S ++ + V N + + + Sbjct: 223 NQASYSSAWQTEIGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEIN 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P GE V N L A+ L +A+G D A + LE+ V GR + N I Y Sbjct: 283 LPYLGEHNVSNVLAASALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINRYCLLIDDTYN 342 Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387 +S++ ++ ++ + RI V Sbjct: 343 ANVDSMKSAVQVLKNYQAFRIFAV 366 >gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 444 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 166/470 (35%), Gaps = 50/470 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ +L+++ + E S D+R I +F A+ G+K+DGH F+ + Sbjct: 4 LDDLLIATGGKLVSKGNEI--------FKEASIDTRTIGKNDLFFALKGSKKDGHEFVDE 55 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ + A VVS N +++VD+T K L A L K I+AV G Sbjct: 56 ALIK-ASGAVVSKN------EGMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVG 108 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + + G +N + P I ++ + Sbjct: 109 SNGKTTTKELIASFLSKKYKILKTEGN--------FNNNIGVPLCIS-----RIENNTEI 155 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + + G + D + TN+G +HI+ + Q E+LP Sbjct: 156 MVLELGTNRPGDIKELCDIVYPDYALITNIGYEHIEGFGSIQGVR----EGELEILPYVK 211 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 DD + + +KR + + ++ + + F Sbjct: 212 TVFANGDDKFLMDGLKRYSGQILTFGMSKECD--FRAENINFYNDHVEFDFYSDIAAFAV 269 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G + +YN A + +GI + + E V R E + N Y Sbjct: 270 KTPLVGIYNIYNLTGAIAVATFLGISKCSIQQITESFTSVKMRGEIIKINGVEIFFDA-Y 328 Query: 363 AHTSNSLE-MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 +S++ + + R R + V G G+ +GK ++ + Sbjct: 329 NANPSSMKVALQELTRRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFI--- 385 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 K + + G++ + I+A + L +++++ KG Sbjct: 386 -----GVGKFIKNALRYVNGYV-FNDPIQAAEFLKKELKGSEIVLI--KG 427 >gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] Length = 456 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 88/499 (17%), Positives = 156/499 (31%), Gaps = 76/499 (15%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M+L F E+ + L Q+ V DSR I+ G +F+ + G + DGH Sbjct: 1 MQL------TFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + + P ++VD+ L A K ++ Sbjct: 54 FIATAFENGAVATLSEKELD----------DYPSILVDDVLAALQRLAQYYLEKMKVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E + L + + AK ++ Sbjct: 156 -------VLEMGQDHMGDIHLLSTIAQPKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 KE +I D + + N G + K +T Sbjct: 209 MKEGGLLIVPADKIINDFLPSQQNVV-------RFGPDEDIFLTKLEERKDSLTFETNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA++AA + + G+ + + L + R E+ + + Sbjct: 262 DNAIDLPVTGKYNATNAMIAAYVALKEGVTQDKIQKAFATLELTRNRTEWKKAKNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + + Sbjct: 322 SDVYNANPTAMRLILETFSTIPFNEKGRKLAVLADMKELGADSKQMHGAM---------I 372 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 T NP +I +EI F+ + A E+ GK H + V Sbjct: 373 TSLNP------EILSEI------FLYGEDMAALFAYAKEIFPP-------GKAH---YFV 410 Query: 476 TNGEKKMSVD-CDIIREIL 493 N EK D ++E L Sbjct: 411 KNAEKDQFSDLVKAVKEAL 429 >gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] Length = 426 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 85/445 (19%), Positives = 153/445 (34%), Gaps = 49/445 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+ ++ G +FVA+ G + DGH FI +A+ GA AI+ D I Sbjct: 9 FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDR---------I 59 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V+++ L+ A G ++ VTG+SGK++ + + + G Sbjct: 60 FLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P I L+ + + + + AS G H N+ Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+++ T++ + + + A+ DD +++ L G Sbjct: 167 GSAHLEFFGTRERI-METKMEIIKHSKENAIAVTLFDDPD----LRKEVPRYRNTLFFGK 221 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 +G LK F +AA LC+ + + Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRTLGETVD 280 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389 + L L VPGRF +G I D Y + + + ++ + + VV Sbjct: 281 IFDLASLKTVPGRFNVR--EKKGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGAMK 338 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------------DPEKIRAEIIHGIP 437 G+R + +G+ L D V P +E DPEKI ++ + Sbjct: 339 ELGERSKEFHEELGERLNVL-DGVYVFLSEPEAEWIKSKKIILKSDDPEKIAKDLATRVK 397 Query: 438 G---FIEKGNRIEAIRTAIEMLNKQ 459 + K +R I +EM K+ Sbjct: 398 KGDVVLFKASRAVRIERVLEMFEKE 422 >gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] Length = 462 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 78/475 (16%), Positives = 156/475 (32%), Gaps = 39/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+Q E+ + + W + + V+ DSR +QAG +F+ ++G DGH Sbjct: 1 MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 +I AI GA A + D + + + P+++V +T L K ++ Sbjct: 54 YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + T + + + Sbjct: 109 AVTGSNGKTTTKDMIASVLSTQFNVTKTHANFNNQIGVPV-----TLLSMEPNTEVVVVE 163 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 ++ S ++ T +G HI++ T+ +AKM + L Sbjct: 164 MGMDHFGELDFLSRL--------VQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + +RA + G Q + Sbjct: 216 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + P+ G + V NAL A + I A + + R E++ + Sbjct: 272 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 331 Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y + +L + G+ I V G + + +A +L D A + Sbjct: 332 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIAS 390 Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + G + + + + I ++ D +++ KG Sbjct: 391 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 443 >gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] Length = 456 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 81/471 (17%), Positives = 149/471 (31%), Gaps = 42/471 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ + + + + ++ + + + VS DSR+I+ G +FVA+ G + DGH ++ Sbjct: 2 LKAMTFNELAQALSARVLS----SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLND 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+GA +V + S P L+V +TR L + + A+TG Sbjct: 58 VAAKGAVGALVQREVA--------DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V + + + G G + P Sbjct: 110 SSGKTTVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPE-------------HTA 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + + + N E L Sbjct: 157 AVIELGASRIG-EIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301 A++ DD + RA +V H + T+ Sbjct: 216 TAVLNLDDKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHSPQGSEH 275 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G V NAL AA A+G+ + L + V GR + I Sbjct: 276 VQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDT 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y +S+ + ++ + +++V+ GD + +G A D N Sbjct: 336 YNANQSSVCAAIDLLKGFDTRKVLVLGDIAELGDWAEQSHREVGAYASGKVDALYAVGPN 395 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468 + + PG + E I+ A+ +++ KG Sbjct: 396 --------MAHAVNAFGPGARHFATQAELIQ-ALTAAEHDTHTTILI--KG 435 >gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 469 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 144/407 (35%), Gaps = 26/407 (6%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + +++ + + ++ VS+D+R I++G +++A+ G +GH FI A Sbjct: 1 MITTTLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAE 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A++ S ++ P++ V++T++ L L + + +A+TG+S Sbjct: 61 NAGASAVIASENV---------TTSLPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSS 111 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V I R G G + P+ L Sbjct: 112 GKTTVKEMCAAILARRGNVLATNGNFN----------NDIGVPLTLL---RLEPHHEYAV 158 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + + +K + N H++ + AK +F+ L Sbjct: 159 MELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLEKDGVAI 218 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFL 303 + K + + + + Sbjct: 219 VNVDSQFAEFWQGKLKQTKTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQ 278 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG V NALVAA L + +G + V + L + V GR + + Y Sbjct: 279 LTIPGVHNVGNALVAAALTLQVGANLENVRDGLIAMQQVSGRLNVKQLTDQVRLLDDTYN 338 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 S+ + + + + R++V+ G++ + +G+ A Sbjct: 339 ANVASVNAAIDTLSSFSGIRVLVLGDMKELGEKARFYHEQVGEYAKQ 385 >gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] Length = 469 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 36/463 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR G +FVAIVG DGH+F+ A +G +VS+ + D Sbjct: 26 EITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGCRFFLVSNESYITDR----FK 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ ++ VDNT L L A + +TG+ GK++ V + + Sbjct: 82 DSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDMVYSVLASKFNT----- 136 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++ P+ L + + S G ++ + ++ G Sbjct: 137 -----IKNEKNYNNQFGVPLTLF---RLEPGHQCAVIEMGMSGFGEIEYLANIVRPKIGI 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII----YADDAYSKEVMKRAHNAG 264 TN+G HI++ +Q+ F AKM + S I Y + + + Sbjct: 189 ITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERYRNSQKDSYK 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + Q + +K + T S E + ++F P GE V NA+ A Sbjct: 249 VYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAILAGHI 308 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ + + L R + + T+ V Y + +S+ LK ++ R Sbjct: 309 TGMTMEEISKGLLDFVATENRQDIIKTDRFTLINDV-YNASPDSMIAALKVLKLYKDRRR 367 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIP--G 438 + + G G + +G ++D AD I+T + I + G Sbjct: 368 VAILGDCLEMGQYAEEGHRRVGYQSIDKAD-IIITA----GHAAKFIGVEAMERGFDLSR 422 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH--ETVHIVTNG 478 + E I + +++ DV+++ A +G E + V G Sbjct: 423 VFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLKG 465 >gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Calditerrivibrio nitroreducens DSM 19672] Length = 446 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 81/443 (18%), Positives = 149/443 (33%), Gaps = 41/443 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR ++ G IF A G K DGHL+I QAI++GA V++ +N P+ Sbjct: 26 ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDEN-------YYDANKPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V +T + GK + +TG+ GK+S + + + + + Sbjct: 79 VLVKDTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNN 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 A I L + +++ S L G T + Sbjct: 139 ELGVAIVTSN-----IDLGAQYAIFEIGTNNPGEIKSLSEFLQ--------PDVGIITGV 185 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G HI + + K+ + E + I D + G V G+ Sbjct: 186 GHSHIGRFGSLKEITKEKLAISEGVKKDGVLWINDGVDTSYYNFPE-----GINVKKFGF 240 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + ++ + F P NAL A L + Sbjct: 241 SKDSDIYIEELNVEKEVNFIVNFNNFRYCFRINHPFSHFAVNALPAIALAFENQFHYEEI 300 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 L+K V GR E + I Y ++ ++N+ I + + I + G Sbjct: 301 YRGLDKFVPVEGRGEIIR-TQNKIIINDTYNAGFEAVLSAVENLSKIDAPKKIAILGEMA 359 Query: 393 DRD-------------QGKRPIM--GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + D KR + + D + + + + E I A+I+ G Sbjct: 360 EIDGFEEKLYSRLKNEVEKRNDIYFYLVGESFKDFQSLENVSYFKDKSELINADILKGDG 419 Query: 438 GFIEKGNRIEAIRTAIEMLNKQD 460 ++ K +R + +E L K + Sbjct: 420 VYLVKASRSKRFEELVEYLKKGE 442 >gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium lentocellum DSM 5427] Length = 456 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 86/476 (18%), Positives = 158/476 (33%), Gaps = 53/476 (11%) Query: 1 MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL QD+I + I + ++ I +++DSR +FV + G++ DGH Sbjct: 1 MKLDIQDIISAVGGKCIQE------GLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHE 54 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI +G A + + T + V++TR+ L + ++ Sbjct: 55 FIKSVYEKGVIATLTMEDKVIDPRLWT-------IKVEDTRQALLDLGHYYRNQFTVPVV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG+ GK+S V + G + P+ L K + Sbjct: 108 GITGSVGKTSTKEMVAAVLSGKWHVHKTDGNFN----------NEIGLPLTLFKMDASHE 157 Query: 179 SQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + +H + HRL TN+G HI+ +++ AK+ + + L Sbjct: 158 AAVIEMGM----NHFDEIHRLSLAAAPEVAVITNVGTSHIENLGSREGILKAKLEILDGL 213 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +P + +D + +V + + + ++ Sbjct: 214 MPGGLLVLNGDND----LLSTVGELPFNKVTYGLNTSNDYYAEAIANEGEYTTAIVTTPQ 269 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + GE VYN L A + +G+ A + + LE R +++ Sbjct: 270 YKCNIRIKALGEHMVYNTLAAIAVAQYLGLSKAEIQKGLESYAPAKMRMHLETYDNQITV 329 Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGKIALDLA-DI 412 I Y + +S+E LK +R GR I V G G+ +G A ++ D Sbjct: 330 IDDTYNASPDSMEAALKVLRDYDTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDR 389 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----IEA-IRTAIEMLNKQDVLV 463 + I G EA I L +D ++ Sbjct: 390 VY---------AVGTLAEYIFKGAKEQEGAPTFYYPTKEAFIEVMQRELQAEDTVL 436 >gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] Length = 454 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 35/421 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L K EL N + ++ + + +S+D+R IQ +F+A+ G+ DG +I Sbjct: 1 MLTRNL--KTITELTNTI--INEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA VV+ Y + + P++ VDNT++F+ A ++A+ Sbjct: 57 EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + T Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + G + + TN+G H+ +T++ AK E L + Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I+ DD +EV + + ++ + A +I+ D Sbjct: 216 DGIFILNNDDPILREVKQEYKLPEKTITLGIKPDSDYRMEMIKADETGSTFSIN----DH 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L G Q+YNA ++ + +G+D + + + L+ + + R E + + + Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330 Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y SL R I V G GD + +GK I + D + Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390 Query: 416 T 416 T Sbjct: 391 T 391 >gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] Length = 444 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 159/446 (35%), Gaps = 48/446 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V+ DSR ++ G +FVA+V DGHL+I QA+A GA A++V ++ I Sbjct: 19 DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHA-------I 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V +T L ++A+TG++GK + + + +F+ Sbjct: 71 TPDIPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGK-TTTKDMTAAILSTKFKTFK 129 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 L+ P + V + G + Sbjct: 130 TPENYNNEIGVPMTLLSMPDDTEVL------------VVELGMDRPGQLTVLSHLVMPDI 177 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T +G HI++ QT+ AK+ + + L + + + ++ +A R Sbjct: 178 AIITMIGEAHIEFFQTRDNIARAKLEITQGLKSDGILLV-----PFDEPLLTQAAVKSDR 232 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L V + + F P+ G + V NAL A + Sbjct: 233 QYFGEKVSAIQALATVT----------TFTFEQQKFAIPVMGRYNVMNALAAISAGKLLS 282 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ID L+ + R E + T+ I Y ++ +L ++++ + R V Sbjct: 283 IDLKHAALALKNFDLTKNRTERLVTSQGVVLISDVYNANPTAVAAVLSTLKSLPARRKYV 342 Query: 387 VFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-E 441 V G G + +G KI D + + +++ G+ Sbjct: 343 VLGDMLELGTQANHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKM--GVERVHLY 400 Query: 442 KGNRIEAIRTA---IEMLNKQDVLVV 464 + ++++ + A + + DV+++ Sbjct: 401 QTDQLK--QLASDLLAISQPGDVILL 424 >gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] Length = 454 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 148/386 (38%), Gaps = 26/386 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + VS+D+R + G +FV + G + DGH FI QA +GA A ++ + Sbjct: 20 LQGINIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAALLEQRINDP-- 77 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P + V + R L A+ + I+AVTG++GK++V + Sbjct: 78 -------LPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMI--------- 121 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G I + + P+ L + +S + + A+ G ++ Sbjct: 122 -ASILGWVEPILATRGNLNNDIGVPLTLLE---LDTSHSFAVIEMGANRPGEIEYLSRLT 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN G H+D + AK +F+ + E AI+ ADD + A Sbjct: 178 RPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GSEGVAILNADDPHFSYWRDLAGG 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + + + A + T+ PLPG V+NAL A+ Sbjct: 237 LPVMGFGLSRSAEVT-ARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAA 295 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 IA+G+D + L L +PGR + + Y SL+ L+ + Sbjct: 296 IALGVDRQHLSASLAALPSIPGRLQIRRGIGGMRLLDDTYNANPASLQAALELLAKFPGE 355 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406 R +V+ F G+ MGK A Sbjct: 356 RALVLGDFAELGEEAAPLHQAMGKQA 381 >gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] Length = 455 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 129/393 (32%), Gaps = 33/393 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +L LI+ + + VS DSR I+AG +F+A+ G + DGH ++ Sbjct: 6 KLSELTNALDARLIS---------ADASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYLN 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + S P L+V +TR+ L + + + AVT Sbjct: 57 EVAAKGAVAALVEREVA--------DSTLPQLLVKDTRQALGQLGALNRAAFTKPVAAVT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G G + P Sbjct: 109 GSSGKTTVKEMLASILRTRGSVHATRGNLNNDLGVPLTLLELAPE-------------HS 155 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + G+ + N E L + Sbjct: 156 AAVIELGASRLG-EIAYTVGLTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGLAAD 214 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA ++ H + + Sbjct: 215 GVAVLNLDDKAFGIWKTRAAGRKVLTFALSNTQADFHASDLATDARGCPAFNLHSPEGVE 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NA+ AA A+G+ + L + V GR + I Sbjct: 275 RVQLNLLGTHNVANAMAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLAKNGMRVIDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 335 TYNANPTSMCAAVDILAGF-SGRTVLVLGDIGE 366 >gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] Length = 457 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 82/415 (19%), Positives = 148/415 (35%), Gaps = 26/415 (6%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ + +N I + IN VS+D+R ++ G +FVA+VG + D H F QA+ Sbjct: 3 DVSLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A++V L N +VV++T+ L ++ ++ + +A+TG+ Sbjct: 63 EANASALLVQRKLDL---------NITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSC 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V V I Q+ G F G + P+ L ++ S Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLLRSESS---DDYAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + +K N+ H++ + A + L A Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAAGDTA 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303 I+ + + S + + + D Sbjct: 220 IVNLESNGGDFWKDVLADKNVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAIDVE 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ V NAL AA L I G A + L L V GR E + I Y Sbjct: 280 LGIIGQHNVANALAAAALSIQFGATLAEIKSGLANLISVKGRVEVQQLSQNIKLIDDSYN 339 Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ K + + R +++ GD +G+ A A ++T Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394 >gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] Length = 468 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 152/475 (32%), Gaps = 55/475 (11%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L + + +++D+R +Q G +FVA+ G++ DGH F+ AIA+ Sbjct: 7 LTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFVVAAIAK 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA VV+ +++ P++ V +T + A + I+ VTG+ GK Sbjct: 67 GALCAVVNREFAVSHPE------FPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSVGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G G +N + P + ++ + + Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + G + G N+G HI ++ A AK L E+ + Sbjct: 168 MAMRGPGEIADLTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + R + + G + + TI V G + PL Sbjct: 228 HD---------NRRLMSTATQVWSGTTITYGLEGGILQGELLGHETIRVAGIELP--LPL 276 Query: 307 PGEFQVYNALVAAGLCIA---IGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYV 360 PG N L A + A + + L L + GR + + Sbjct: 277 PGSHNASNFLAALAVLRAIAGWETSAEELYAPLSTGLSLQMPQGRAKRYHLAQDILLLDE 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y S LK + R I V G G+R +G L D + Sbjct: 337 TYNAGLESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFIL 396 Query: 417 DDNPRSEDPEKIRAEIIHG--IPGFIEKGNR--IEA----IRTAIEMLNKQDVLV 463 D + G + FI+ + +A I + L D ++ Sbjct: 397 AD-------LAEAQAMAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVL 444 >gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] Length = 454 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 84/429 (19%), Positives = 160/429 (37%), Gaps = 37/429 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L K EL N + ++ + + +S+D+R I+ +F+A+ G+ DG +I Sbjct: 1 MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA VV+ Y + + P++ VDNT++F+ A ++A+ Sbjct: 57 EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + T Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + G + TN+G H+ +T++ AK E L + Sbjct: 157 EVAVLEMGTENFGEISQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I+ DD +EV + + ++ + A +I+ D Sbjct: 216 DGIFILNNDDPVLREVKQEYKLPEKTISFGIKPDSDYRMEMIKADETGSTFSIN----DH 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L G Q+YNA ++ + +G+D + V + L+K+ + R E + + + Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDVAKGLKKIELTGMRNELILLDKF-HILND 330 Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y SL R I V G GD + +GK I + D + Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390 Query: 416 TDDNPRSED 424 T P +E+ Sbjct: 391 T--GPLAEN 397 >gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria monocytogenes FSL F2-208] Length = 346 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 133/344 (38%), Gaps = 26/344 (7%) Query: 7 IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + K E++ L SI +R+ I V D+R I++G +FV VGN DGH F+ QA Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A ++ P+++V++T L A++ + ++A+TG++ Sbjct: 74 EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + I + + + G + LT P +A ++ + Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + + TN+G HI+Y +++ AK+ + L P Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + + ++ N R L+ G + I+ + + Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 P+ GE V+N + A IGI+ + L+ + R E+ Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEW 333 >gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 454 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 72/469 (15%), Positives = 171/469 (36%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L E++N + ++ V DS+ I G +FV I+ K DGH ++ +A+ Sbjct: 4 LQLNKLEEIVNGEG-LQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAME 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A + +Y PI+ VD+T L A ++ +TG++G Sbjct: 62 KGAAASLWKKSYGDP------PKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+ V + I + G ++ P+ + + + Sbjct: 116 KTMVKDIISTILSTTYRVHKTKGNLNSQ----------IGLPLTILEMKQD---TEFLIL 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 163 EMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++ + N L ++ V + + P Sbjct: 223 N-----GDEPLLSQNINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+ ++N +V + + + E L+++++ RF+F+ + I + + Sbjct: 278 LHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNAS 337 Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +S++ ++ ++ + + I+V G G + + +G++ + + + T Sbjct: 338 PSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT----Y 393 Query: 422 SEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ + ++++ K+DV+++ KG Sbjct: 394 GELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLL--KG 440 >gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] Length = 476 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 85/439 (19%), Positives = 145/439 (33%), Gaps = 28/439 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F A+ G + DGH F+ QA+ +GA +VV Y++ S R ++ V Sbjct: 36 DSRRVHPGDLFWALKGERFDGHDFVHQAVREGASGVVVQREYTI---SVENRPEIAVIAV 92 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 DNT + L A+ +H + A+TG+SGK++ I + + G Sbjct: 93 DNTLRALGDLAAWWRRQHTAKLAAITGSSGKTTAKEMTAAILEMENKTLKNPGN------ 146 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 + P+ L S V + + G + + N+G Sbjct: 147 ----HNNLIGLPVTLL---KLDESHKRAVVEMGMNHKGEIARLTEIAGPDTAAILNVGMA 199 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H++ AK L P + D + + Sbjct: 200 HLERLGDMDGVAEAKTELIAHASPDTKIIL--NGDDAVLMKHATKFDRKFVTFGMKKGNH 257 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + + + P+ G V NAL AA + +++ + Sbjct: 258 IHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNALAAAAIALSLKEPVENIARG 317 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG-- 391 L V GRF+ + I Y ++LE L + + GR+IV G Sbjct: 318 LRNFKGVKGRFQCIPLEGDIILIDDTYNANPSALETALLSALKMVDRDGRLIVGLGDMLE 377 Query: 392 -GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 G+ G +IA A + I A + E + + A Sbjct: 378 LGEAAVSAHREAGSRIAESGASRLFFMGTHGEHVRNGAIAAGMPSNHVIISETHDELTA- 436 Query: 450 RTAIEMLNKQDVLVVAGKG 468 I +DV+ + KG Sbjct: 437 -NIIRKARPKDVIFL--KG 452 >gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis] gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] Length = 472 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 93/447 (20%), Positives = 168/447 (37%), Gaps = 40/447 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS DSR + G IF I N+ DGH F QA+A+GA A+V+ + + + P Sbjct: 28 GVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQALARGAGALVI----AQNRLDDMKQLSAP 82 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++VV + K L A + I+AVTG+ GK++ ++++ Q G I + Sbjct: 83 LIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKTTTKEALKKVLQTVGKVHANIASFN 142 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSF 209 P+ LA+ + E + D+ R + + Sbjct: 143 NCWGV----------PLTLAQM-----PLDSDYGIFEIGMNHKDEIRSLVKLVCPHVALI 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T++ HI++ + + +AK +FE L K + D +S V K ++LS Sbjct: 188 THIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAEQCNVKKILS 247 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K++C + N +T+ G+D PG V N+L C A+G D Sbjct: 248 FGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVIAACDAVGAD 307 Query: 329 SALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---S 381 + + L + GR I Y S+ L + Sbjct: 308 LSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNLLSIGPVGAC 367 Query: 382 GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I V G + ++ R ++ I A+ + ++ + + ++ + Sbjct: 368 GRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFL-----FGKEMKFLAVDLSSYVE 422 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + E + ++K D+++V Sbjct: 423 -VHYAEHVEEILPLIFTEISKGDLIIV 448 >gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] Length = 477 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 71/389 (18%), Positives = 136/389 (34%), Gaps = 25/389 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85 + +S DSR I+ +F+AI G DGH FI A+ QGA I+ + + + Sbjct: 42 EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ + V NT + A + E ++ +TG+ GK++ + + Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRI-EKVIGITGSVGKTTTKEIL---------KTL 151 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + + +N + P + + + S G Sbjct: 152 LKGYQTVSTFGNFNNEIGLPLSL-----FRAKKNDKFGIFEMAMRSKGEISQLCSIAMPD 206 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G T + HI + + AK + + + E++K Sbjct: 207 IGIITRIAESHIGLLGSMENIARAKGEILDFVDSAFLNFNCKYSRKIFGEMLKDKKGKPK 266 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V+ G + +++K + ++ +S +F P Q L + + + Sbjct: 267 EVIWFGKES-DLYIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAVARFL 325 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR 383 G+D + ++L+ H + GRF + I Y T S L+ I+ + R Sbjct: 326 GLDWNEINDNLQGYHPLQGRF-LIKKLGDQIVIDDSYNATCTSFLKGLETIKSLKFGNRR 384 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL 409 I VFG GD+ + + K +L Sbjct: 385 KIFVFGDILEAGDKSRDLHKKVIKKIEEL 413 >gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis ATCC 367] gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis ATCC 367] Length = 461 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 146/422 (34%), Gaps = 37/422 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+Q E+ + + QW + V+ DSRH+Q G +F+ + G DGH Sbjct: 1 MKMQ------LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI AI GA A + + A+ ++ P++ VD++ K L A K ++ Sbjct: 54 FIQSAIDHGAVATLWARDL------ASAPADFPVIQVDDSLKALQTLAQYYLSKINPRVV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + P+ L + Sbjct: 108 AVTGSNGKTTTKDMIAAVLSTQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDR 167 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +S S T +G HI++ T+ +AKM + L Sbjct: 168 PGQLDFLSQLVS-------------PDLALITMIGEAHIEFFGTRDKIADAKMEITHGLS 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + +RA R ++ G QG + + Sbjct: 215 DDGVFVFNG----DEPLLRERATELTQRQVTFGQQGTDDLFATDVTGTPTTTSFTTNQWP 270 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + F P+ G + V NAL A + + I + L + + R E+V + S + Sbjct: 271 EVTFTIPMIGTYNVNNALAALSVAMLYRIRPESAKQALATVSLTENRAEWVTSASGAAIL 330 Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIA 413 Y + + +L +G+ VV G GD+ + I D Sbjct: 331 SDVYNSNPTAAKEVLTAFSQTPVTGQRYVVLGDMLELGDQADAMHASLASAIDATKIDHV 390 Query: 414 IV 415 + Sbjct: 391 YL 392 >gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 472 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 136/402 (33%), Gaps = 39/402 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M+L F E++ + + + V +DSR ++ G +FV I G DGH Sbjct: 1 MRLS------FEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHD 54 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117 F +AI GA A++VS P+++V++T K L A + E + Sbjct: 55 FAVKAIEAGAAALLVSRNPFDAVPP------VPLILVEDTVKALGKLAHCWRERLGETRV 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TGT+GK++V + Q+ R GL++ + T + Sbjct: 109 IGLTGTAGKTTVKELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGE--EAFWVMEAG 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S + A ++ N+G H + Sbjct: 167 ISHPNDMDELGA-----------ILEPDLALILNVGPGHAAGLGDRGTAHY--KSKLLAH 213 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L AII AD + + G Q + V A +K + ++G Sbjct: 214 LAPGGTAIISADYPDLAREARAVRQELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDG 273 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P G F N + A + +G+ + + + RF + G Sbjct: 274 VSIDVEAPFRGAFGAENVIAVAAVAHRLGLGAEEIAAGFAGAALPKQRF---ACSRAGDW 330 Query: 358 IYVDYAHTSNS------LEMILKNIRTITSGRIIVVFGCGGD 393 + +D ++ +N LE + ++ V G G+ Sbjct: 331 LVIDDSYNANPLSFSRMLEAAAEMAGDHADRPLVCVLGEMGE 372 >gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] Length = 441 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 81/448 (18%), Positives = 160/448 (35%), Gaps = 47/448 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 ++ +DSR ++ G +FVA+ G K DGH F+ +A +GA +VV +++ Sbjct: 16 GENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEGKF 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV+++ K L A ++ + G++GK++ V + G Sbjct: 76 A-------LVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVC 128 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++++ P + ++ + + AS+ G + Sbjct: 129 KTPKN--------YNSQIGVPLSV-----ANFPEDCDFWVIEMGASAKGDVAKLTQLVIP 175 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T++G +H++ + E + V+ Sbjct: 176 HVRVITSIGEEHLETFGCLDDVILGNGEILEGMR------------EDHVAVLPSYVAHC 223 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 RV G+ L + V V+GK+ P+P V N L + G+ A Sbjct: 224 YRVERAVLFGEGTPLSAQDLKLTVEGVRFVVKGKEIF--LPVPSLALVENILCSLGVMEA 281 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+D +L+ L V GRF + I Y S++ ++++ ++ G Sbjct: 282 LGVDWTTLLDKLTTFRPVEGRF-RTLSVMGATIIDDSYNANPLSVKKAIESL-SLMEGHR 339 Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G G++ + +G+ A D I R G+ I Sbjct: 340 IAVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRY----AFHEAKRLGVS-TI 394 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ E ++ + L + +++V KG Sbjct: 395 YLEDKGEVVQHLRKKLREGTIILV--KG 420 >gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 514 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 94/496 (18%), Positives = 162/496 (32%), Gaps = 58/496 (11%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +L D+ EL++ + + V DSR++ AG +F+ + G + DGH F Sbjct: 5 RLGDIAAITGGELVDGAE------PDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFA 58 Query: 61 PQAIAQGAEA-----------IVVSSAYSLQDFSATIRSNTPILVVDNT------RKFLS 103 A+ QGA A I+V ++ + + + +L DNT LS Sbjct: 59 GIAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSY---VLEADNTGEGQAVITALS 115 Query: 104 LFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159 A K + ++ VTG++GK+S + + +++G + G + Sbjct: 116 KLARAHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGS--------FN 167 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N L P AL + A + G H G+ N+G HI Sbjct: 168 NELGHP-----YTALKVGEHTTYLVSELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGE 222 Query: 220 HQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 +++ A ++ A++ ADD + R Sbjct: 223 FGSKENIAQAKGELVEALPPAADGGVAVLNADDPLVIGMRNRTSARIVTFGMDNPATVRA 282 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-L 336 ++ A+ K + G QVYNAL AA + A G+D + + Sbjct: 283 EDVELDAVARAAFTLCIEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALS 342 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391 E + R + I Y +S+ + + SGR V G Sbjct: 343 EHVSSSEYRMDVRTRADGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMG 402 Query: 392 --GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GD + + ++ D + DN + E EA Sbjct: 403 ELGDDSLTEHAALAEVLYNRHVDNLVAVGDNTAM---GALALEARRYGVNTEVVSTTQEA 459 Query: 449 IRTAIEMLNKQDVLVV 464 + L DV++V Sbjct: 460 ADIVLRHLKPGDVVLV 475 >gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] Length = 457 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 84/476 (17%), Positives = 168/476 (35%), Gaps = 49/476 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + + R++ V DSR +Q ++FVAI G + H FI Sbjct: 1 MK--NLTLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P I +GA ++ DFS ++V++T + L A ++ + Sbjct: 59 PDTIEKGALCVISHEDLGDTDFS--------YILVESTGQALLDIAKLYRDSFDVKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + IG + LT + Sbjct: 111 TGSVGKTSTKEMIASVVAQKYKVHKTIGNFN----NEWGLPLTIFELNEDHQVAILEMGV 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 SS TN+G H+++ +T++ K ++ +++ Sbjct: 167 NHFGEMRRLSSVA---------SPDICVITNIGVAHLEFFKTREGILQEKSKMIQDMKDG 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + DD S+ + L Q +++ + + + E F Sbjct: 218 GTIIFNGDDDLLSQAGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEY-SF 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + + PLPG + NAL A + + + S + +E L +PGR + T+ Sbjct: 277 ECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKTDRLIILDDC 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S++ + + + GR + V G G+ ++ +G+ A + Sbjct: 337 -YNANPVSMKAAIDVL-DMAIGRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCGI 394 Query: 418 DNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + E++ G F K + ++A++ I D ++V Sbjct: 395 GH--------LAKELVDGATNGSSSTRGLWFENKADFLDAMKDLI---KDGDNVLV 439 >gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 350 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 7/227 (3%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 SR ++ G ++VAI G + DGH FI +A+++GA +V SL D + P + V Sbjct: 6 SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVP----PDVPYVRVT 61 Query: 97 NTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + R+ S ++R+YG + + +SV + + Sbjct: 62 SARRAASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNET 121 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 LTT L +AL + G TH +E SSHG+ QHR + FTNL Sbjct: 122 GLRTVPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLT 181 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 R+H+D+H + + Y AK RLF L ++ AI+ DD Y+ + + Sbjct: 182 REHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENC 228 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%) Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----EK 442 G+RD+GKRP MG IA LAD ++T D+ SEDPE+I EI+ G Sbjct: 242 VRGRGERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCDVV 301 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 +R +AI A+ N +DV+++ G+GHE+ +V G + D D++RE Sbjct: 302 LDRAQAIERAVIEANDEDVILITGRGHESFQVVG-GLRLEQTDADMVREA 350 >gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] Length = 465 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 69/389 (17%), Positives = 135/389 (34%), Gaps = 22/389 (5%) Query: 6 LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + +W +R+I V+ D+R + +FV ++GN DGH FI +A Sbjct: 2 MISLTVKEIAMAVGAINDTSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA + S L+D + + PI+ V++T K L A K ++ +TG+ Sbjct: 61 VENGAAVSLWSKP--LKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGS 118 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + G + I L + + + Sbjct: 119 NGKTTTKDMADAVLSSQYRVHKTQGNFNNH--------------IGLPITILEMPIETEV 164 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + S + L + + + + +A L + Sbjct: 165 VILEMGMSRAGEIKVLSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGLKENGV 224 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I ++ +E + + + + L Q ++ E D Sbjct: 225 LIYPGEEPLLQERVAVLKGSQLKTFGTSPENDLYPLN--IDAQMNQTSFVTNERPDLVVS 282 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G + V NAL A + +GI L + + R E++ + + Y Sbjct: 283 LPVLGTYNVNNALAALMAGMTLGISIEKSAPKLAQFQLTKNRTEWLKGINESSILNDAYN 342 Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG 391 +++ +L N T +G+ IVV G Sbjct: 343 ANPTAMKAVLDNFSTFTNTGKKIVVLGDM 371 >gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] Length = 462 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 76/443 (17%), Positives = 156/443 (35%), Gaps = 33/443 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R + +F+ + G + DGH +I QAI QGA+A+ T Sbjct: 27 IESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVFWGR------QDQTPPEG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + VD+ + A K N++ +TG+SGK++ + G Sbjct: 80 ICAIWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKDMTAAVLASRYRVYKTQGN 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + L + + S G + K + Sbjct: 140 FNN-------------DIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVAAI 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T +G H++ ++ AK+ + + L K S + +++ + +VL Sbjct: 187 TLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEHFKVLP 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + + + V+ P+ G + V NAL A + + G+ Sbjct: 247 FGEGSSSVIQAENIQLFEDHTIFDLVKPSKQSVQLPVLGAYNVNNALAALQVGLECGVPL 306 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 +E +++ + R ++V + Y + +++ ++++ ++ T GR IVV Sbjct: 307 EQAIEAIQQFELTKNRTQWVDGIHGSKILNDAYNASPIAMKSVIQSFTSVATKGRKIVVL 366 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDD----NPRSEDPEKIRAEIIH--GIPGFIEK 442 G + + + + I+ + +D E+ + + Sbjct: 367 GDIRELGEQSKALHASISE-----VMFPEDIQEVYLYGEEMSALFEALKTRFEASHLHYV 421 Query: 443 GNRIEA-IRTAIEMLNKQDVLVV 464 N +A IR E L + D ++V Sbjct: 422 ENDKQALIRLLEEELRQNDQVLV 444 >gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 144/377 (38%), Gaps = 26/377 (6%) Query: 8 YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 K E++ L SI +R+ I V D+R I+ G +FV VGN DGH F+ QA Sbjct: 2 KKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQARE 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A ++ P+++V++T L A + + ++A+TG++G Sbjct: 62 MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + I + S + G + LT P +A ++ + V Sbjct: 116 KTTTKDIMAAIVETSYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIEV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + TN+G HI+Y ++Q AK+ + L P Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSRQEIAKAKLEITAGLNPSGILIY 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 Y + ++ + R L+ G + + ++ D + P Sbjct: 223 -----PYEETLLLSQIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWEPDLEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE V+N + A IGI+ + L+ + R E++ + + Y + Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNMERSKSRLEWLTAKNGARILNDAYNSS 337 Query: 366 SNSLEMILKNIRTITSG 382 +L+ +LK + S Sbjct: 338 PTALQTVLKTFMHMDSK 354 >gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 469 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 45/477 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E++ ++ E + DSR + G +FVA+ G + DGH + A+ Sbjct: 4 MLLSTIAEVVGG-TLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYALSAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122 GA A++ + P ++VD+ L I+A+TG Sbjct: 63 KAGAAAVLATRPV-----------GVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +G + +N + P I +A S Sbjct: 112 SAGKTSTKDLIAQLLPAAGRVVAT--------PESFNNEIGLPLTISMADP-----STDY 158 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + TN+G HI + A E LP Sbjct: 159 LVLEMGARGIGHIRDLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVA-KGEIVEALPASG 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + R V A + T++ Sbjct: 218 LAVLNADDPLVLAMAARTTARVSSFGLSDEATVRATDVTVDAFG-RATYTLTTPEGSAPV 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVD 361 L G QV N+L AA + G+ A + + L R E + Sbjct: 277 SLQLVGAPQVSNSLAAAAVAREAGLSVADIADLLSAATARSRWRMEVSARADGVTVVNDA 336 Query: 362 YAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPI---MGKIALDL-ADIAI 414 Y +S+ L+ + T+ G R I V G + R +G+IA L D + Sbjct: 337 YNANPDSMRSSLEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIV 396 Query: 415 VTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E+ +R + ++ A++ + L DV++V A +G Sbjct: 397 FV----GGEEAGWMRQAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKASRG 449 >gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] Length = 458 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 98/448 (21%), Positives = 166/448 (37%), Gaps = 40/448 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ +A QGA +VS A + Sbjct: 24 VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSEAIAQ---------- 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++ L A + ++ VTG+ GK+ + R Sbjct: 74 -PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKTGTKEALFHALDRIC-------- 124 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + P+ L++ + + + G ++ Sbjct: 125 PGEVHRSVKSYNNHVGVPLSLSRMPRESA---YGVFEMGMNHAGELAALTRQVRPHVAIV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + HI++ T++ AK +FE L A+I D + + +A R+L+ Sbjct: 182 TAIAPAHIEFFGTEEKIAEAKAEIFEG-LEPGGTAVIPYDSPHVATLYAKAEKHAARILT 240 Query: 270 VGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ + V A VT ++ G + F PGE V NAL A+G Sbjct: 241 FGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNALAVLAAVEAVGG 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384 D A L ++ +PGR E GG + Y S+ LK + +GR Sbjct: 301 DLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAATLKQLGREQAGRR 360 Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G GDR + + + + D AI+ D + AE + G+ F Sbjct: 361 IAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGD------EMQPLAEALGGVIAFD 414 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + +A + D ++V KG Sbjct: 415 HVPDAAKATDLIQGEMRAGDAILV--KG 440 >gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida F1] gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas putida F1] Length = 455 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 131/416 (31%), Gaps = 31/416 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L + I + VS DSR + AG +FVA+ G + DGH ++ Sbjct: 2 LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+GA A +V + + P L+V R L + + ++A+TG Sbjct: 58 VKAKGAVAALVEREVA--------GVDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V + I + GL G + P Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + G+ N E L + Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301 AI+ DD RA + H + T+ G+ Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVA 275 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GE V NAL AA A+G+ + + L + V GR + I Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414 Y S+ + + SGR ++V G G+ Q +G A D Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390 >gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] Length = 453 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 139/421 (33%), Gaps = 37/421 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK + KD +++N I ++ ++I ++ DSR ++ G +F+ +G DGH +I Sbjct: 1 MK---YLVKDLEQILNAKKINIVE--NKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA A + S+ I+ V+++ + A I+A+ Sbjct: 56 ESAFEKGAAASLS--------LKEDFTSDNNIIYVEDSYVAIQALAKHYLDSLNAKIIAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + G +N L P I A S + Sbjct: 108 TGSNGKTTTKDIITGLLETKFKVHKTQGN--------FNNELGVPITILAAPEDSEIL-- 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A G ++ TN+G HI++ +++ AK + + Sbjct: 158 ---VLEMGADGFGQLDFLSKLVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + + N G I L+ + +++ + F Sbjct: 215 GFFVY--NGDEVLLKDLVDKSNIGATSCGENDYNNII-LENYTITRDHIDFKLNLSDEKF 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 A + + ID + + + R E + I Sbjct: 272 TTKLKGKHNLFNIMFATAIAEKLGLSID-EIRKAIEKTSEITHMRLESIPYGKDSLIIND 330 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA---DIA 413 Y + S++ + + + G ++ +G+ + + D+ Sbjct: 331 AYNASPTSMKASVDVVSGFDDFDYKTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLV 390 Query: 414 I 414 I Sbjct: 391 I 391 >gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 455 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 141/417 (33%), Gaps = 36/417 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL +L LI + + VS DSR I G +FVA+ G + DGH ++ Sbjct: 6 KLSELTSALNARLI---------AADATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYLN 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V S P L+V++TR+ L + + + A+T Sbjct: 57 EVAAKGAVAALVEREV--------TNSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAIT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G G + P Sbjct: 109 GSSGKTTVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPE-------------HS 155 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + + K N G H+ + AK + E L + Sbjct: 156 AAVIELGASRLGEIAYTVGMTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEG-LDAD 214 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD + RA ++ + + + Sbjct: 215 GVAVLNLDDKAFEIWKTRAGERKVLTFALSNLAANFYASDLDRDARGCPAFNLHSPDGAE 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 275 RVQLNLLGTHNVANALAAAAAAHALGVSLPGIVAGLNAVQPVKGRSVAQLASNGMRVIDD 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAI 414 Y +S+ + + SGR ++V G G+ Q +G A D Sbjct: 335 TYNANPSSMCAAVDILAGF-SGRTVLVLGDIGELGEWAQQGHHDVGAYARGKVDALY 390 >gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] Length = 452 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 174/472 (36%), Gaps = 40/472 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++ ++ K++ L+ + I +K+ V+ DSR + G +F A+ GN+ GHLF+ Sbjct: 1 MVMRPILLKEWSSLLLDIDIPCSG---KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA A VV+S Y D+ +L V + R+ L ++ + Sbjct: 58 KQAAQSGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ SF QQ+ S + +++LT P I A Sbjct: 112 TGSVGKTTTKSFTQQLLSPFYKV--------FASPKSYNSQLTLPLSILTADGDEDFL-- 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S + LD I+ G T++ H + A A+ + L + Sbjct: 162 ---VLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLL--LER 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ D ++ MK+ A S+ + + + + + + V IS D Sbjct: 217 CGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISAPDGDI 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P N ++A L + + + + L + RFE N I Sbjct: 273 ELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQEHNGI-RIIND 331 Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + +++ L + G+ + + G G + + A+ A + Sbjct: 332 AYNASPDAMLAALDAVPIPSEGGKTVFILGHMAELGRYSDECHIAVARKAVTKAHVVFFV 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +R + G+ E + ++ + DV+++ KG Sbjct: 392 -----GEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLL--KG 436 >gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] Length = 466 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 146/389 (37%), Gaps = 30/389 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + V +DSR ++ G +FVA+ G + D H FI +A+GA A++VS Sbjct: 27 QAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVSRDVD--------- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P +V +TR L + + +AVTG++GK++V + I + ++ Sbjct: 78 AGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203 +++ P+ + + + G+ H G+ Q + Sbjct: 138 ATGGNLNNDI-------GLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTV---- 186 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHN 262 TN R+H ++ + +A + L +++ + + RA Sbjct: 187 ---AVVTNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAA 243 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RVLS G G+ V + Q + + G F+ L G V NAL A Sbjct: 244 GTRRVLSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALAATACA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G+ + + L V GR + T I Y +S+ + + + Sbjct: 304 LAAGVQVPAIQQGLAAFKAVKGRLQVKHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDL 409 R++V+ G GD+ +G A L Sbjct: 364 RLLVIGDMGEVGDQGPAFHTEIGGYAQAL 392 >gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 463 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 151/454 (33%), Gaps = 43/454 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + V+ DSR IQ G +F A+ G + DGH ++ A +GA VV S Sbjct: 20 ADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAAFKRGAAGAVVMSPVPY------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++VD++ + L A ++ I+ +TG+ GK+S ++ +R Sbjct: 74 -----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKV 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S + L + + + + + +H + L + Sbjct: 129 HYSLKSYNNHVGVPLSL------------ARMPEESLFGIFEMGMNHAGELSDLTKLVQP 176 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264 + + E L AII D Y + + Sbjct: 177 DVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAKVQEKKA 236 Query: 265 -CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R G V + VT S+ + F + E+ + NA+ + Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMAVLAVVD 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTI 379 A+G D L L + GR + G V Y S+ +K + Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG 435 R IV+ G + Q +A L+ D ++ ++ + + Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLV-----GQEMAALEESLAGK 411 Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I IEK ++ EA+ E+L D+L+V KG Sbjct: 412 IACDRIEKADQAEALLD--EILKADDILLV--KG 441 >gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 451 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 74/474 (15%), Positives = 178/474 (37%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E++N + +I+ V DS++++ G +FV I+ K +GH ++ Sbjct: 1 MNLKKL-----EEVVNGEGLQESFHL-IEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMERD---T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSREEIAKAKFEIIDGLNDD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + N L ++ V + Sbjct: 215 GLFLYN-----GDEPLLSQNINMLSIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKI 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ + NA+V + + + + E L+++++ RF+F+ + I Sbjct: 270 QYDIPLHGKHNILNAIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKTGFTIIND 329 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + ++V G G + + +GK+ + + + T Sbjct: 330 AWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKGETYHREIGKMLNEKSIQYVFT 389 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ + DV+++ KG Sbjct: 390 ----YGELAKIVAEEARKNYDAGKVQSFDNKAEIAEEVLKIITQNDVVLL--KG 437 >gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37] Length = 447 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 94/465 (20%), Positives = 154/465 (33%), Gaps = 40/465 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I E+ +S + D R + G +FVA G DGH + QA Sbjct: 1 MIPLSLDEIAAVVSGTVEGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA A++ S + P +VV++ R L A+ + + + ++ +TG Sbjct: 61 RAGAVAVLGSR-----------PTTLPTVVVEDARAALQALAAHVVARLRDRLTVVGLTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + +G + IG + TTP +L Sbjct: 110 SQGKTSTKDLLAAVLSHTGSTVATIGSLNNELGVPLTMLRTTPDTRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + L N+G+ HI +++A AK L + L Sbjct: 158 -VLEMGARGIGHIAELTALVALDVAVVLNVGQAHIGEFGSREAIATAKAEL-LQGLVPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ ADD + L + T+ Sbjct: 216 TAILNADDPRVLVMRALTDGPAL-TFGRAEHAHVRVLDLALDRLGRPAFTLRTADASAPV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G Q NA AA +A GI + L + R E G + + Y Sbjct: 275 ALPLVGAHQALNASAAAAAGLAAGIPLDVTAATLATASLSKWRMELRGLSGGVSLLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 +S L + I +GR I V G GD + + +G+ A AD+ + Sbjct: 335 NANPDSTRAALDALAAIEAGRRIAVLGEMRELGDDSEAEHRAIGEYAARAADLVVAV--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E I G + + A+ L DV++V Sbjct: 392 --GEAAAPIAE--GAG-DRAVALADNDAAVDWLRRALTAGDVVLV 431 >gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] Length = 511 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 90/478 (18%), Positives = 154/478 (32%), Gaps = 50/478 (10%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 DL K+ +++ S+ + + ++ V DSR + G +F+ G K DGH F +A Sbjct: 3 DLTLKEIADIVGG-SLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKA 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN-------TRKFLSLFASR-- 108 I QGA A++ + + + ++ + LS A Sbjct: 62 IEQGAVAVLAAREVGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVVRALSDLAHYVT 121 Query: 109 --LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 L +H +I+ VTG++GK+S + I + G + G + Sbjct: 122 TKLTSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHPYTALRCDVD 181 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 + A G +H D G N+G H+ +++ Sbjct: 182 -------------TKYLVAELSARGIGHIKHLTDIATPRIGVVLNVGTAHLGEFGSRENI 228 Query: 227 FNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKV 282 A ++ + + A++ ADD + + KR S G + + Sbjct: 229 AIAKGELVESLPDVSEGGVAVLNADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNI 288 Query: 283 CAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + K + G QV N+L AA I G+ V + L Sbjct: 289 TLDNVARPSFTLHAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHR 348 Query: 341 V-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG---G 392 R + I Y +S+ + + TSGR I V G G Sbjct: 349 NASAHRMDVHTRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLGEMGELG 408 Query: 393 DRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 D + +G IV + E AE GI + + EAI Sbjct: 409 DDAIEEHYSLGAELAKFDVHTLIVVGETANGEAMASAAAE--RGI-NTMVSRDIDEAI 463 >gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 446 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 79/409 (19%), Positives = 141/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ G +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ A ++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNRAV---------KTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRPLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] Length = 454 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 81/421 (19%), Positives = 157/421 (37%), Gaps = 35/421 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L K EL N + ++ + + +S+D+R IQ +F+A+ G+ DG +I Sbjct: 1 MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA VV+ Y + + P++ VDNT++F+ A ++A+ Sbjct: 57 EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYINSLKCKVIAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + T Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + G + + TN+G H+ +T++ AK E L + Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I+ DD+ +EV + + ++ + A +I+ D Sbjct: 216 DGIFILNNDDSILREVKQEYKLPEKTITFGIKPDSDYRMEMIKADETGSTFSIN----DH 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F L G Q+YNA ++ + +G+D + + + L+ + + R E + + + Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330 Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y SL R I V G GD + +GK I + D + Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390 Query: 416 T 416 T Sbjct: 391 T 391 >gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 458 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 94/452 (20%), Positives = 154/452 (34%), Gaps = 44/452 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ V+ DSR G +FVA+ G DGH F P A+ GA A++ + Sbjct: 24 TQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAAR-----------P 72 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P +VV++ L +A +++AVTG+SGK+S + Q+ R+G + F Sbjct: 73 LGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGKTSTKDLIAQVLDRAGATVFT 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + LT + V + A G + Sbjct: 133 QGSFN----NEIGLPLTALEA---------TADTRHLVVEMGARGQGHIAYLTGITPPRI 179 Query: 207 GSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G+ N+G H A ++ + A++ ADD + R Sbjct: 180 GAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMSARTKAEV 239 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + + T+ + GE QV NAL AA + A Sbjct: 240 VTFGVERAADVYATGVALDGRG-RASFTLHTPAGQAPVRLQVVGEHQVPNALAAAAVAGA 298 Query: 325 IGIDSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 G+D + L + V GR + Y ++S L+ + + Sbjct: 299 AGMDVEQIGGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSAALRALAHLGRES 358 Query: 382 -GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I + G GD + + +G +A L +V R+E + E P Sbjct: 359 GGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVG--RAE-AHALADE---YGP 412 Query: 438 GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 G +R A L DV++V KG Sbjct: 413 GGQVVADRDAAGEWLERYGLRAGDVVLV--KG 442 >gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 463 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 86/454 (18%), Positives = 151/454 (33%), Gaps = 43/454 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + V+ DSR IQ G +F A+ G + DGH ++ A +GA VV S Sbjct: 20 ADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPY------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++VD++ + L A ++ I+ +TG+ GK+S ++ +R Sbjct: 74 -----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKV 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S + L + + + + + +H + L + Sbjct: 129 HYSLKSYNNHVGVPLSL------------ARMPEESLFGIFEMGMNHAGELSDLTKLVQP 176 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264 + + E L AII D Y + +A Sbjct: 177 DVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAKAQEKKA 236 Query: 265 -CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R G V + VT S+ + F + E + NA+ + Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVD 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTI 379 A+G D L L + GR + G V Y S+ +K + Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG 435 R IV+ G + Q +A L+ D ++ ++ + + Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLV-----GQEMAALEESLAGK 411 Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I IEK ++ EA+ E+L D+L+V KG Sbjct: 412 IACDRIEKADQAEALLD--EILKADDILLV--KG 441 >gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f. nagariensis] gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f. nagariensis] Length = 696 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 121/314 (38%), Gaps = 19/314 (6%) Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G+ + G + + A + P+ +I ADD ++E+++ Sbjct: 341 VTGLSVHMGVPASEQPEDRADEVRAAAELAMITLERKLTQPEMQVLVINADDPATEELLR 400 Query: 259 R-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R + + + ++ + +V I + L G YN + Sbjct: 401 RLNNAVPVVTFGMSNSRADVFVESYKNNIWETEVIIRTPTGRLQIITNLLGRHNAYNLVA 460 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+ + + +PGR E + + + VD A + +L +L +R Sbjct: 461 AVATGVALKAPL-QSIVAGIEAVEIPGRSEVI-DEGQEFSVVVDAAQSPETLASMLDALR 518 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---------- 427 + +I VFGC G+ D RP MG +A +D IVT++NPR EDP K Sbjct: 519 RGGARQIFTVFGCSGNEDPSIRPKMGAVAHAKSDYVIVTNENPRLEDPAKDQGRTPLWFE 578 Query: 428 -IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE----KKM 482 + +I +R AIR AI +DV+++AGKGH+ + + + Sbjct: 579 PYLQKAQRDNKRYI-MEDRYSAIRAAIGTAGPEDVVLLAGKGHQDWVEHADTDGNILRGW 637 Query: 483 SVDCDIIREILGLI 496 D R L + Sbjct: 638 LDDRVEARNALSKL 651 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 13/152 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIV 72 +++ + + + + S+ + G IFV G +D I A+ QGA IV Sbjct: 68 VMDAALWLASSYPDVLVTGLQSNPHLVVPGDIFVLHPGLIPDDDLDAISVAVEQGATVIV 127 Query: 73 V----------SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT- 121 A + + P++ V+++ + A+ Y N++ + Sbjct: 128 APRVKAEDPGLDPAPDPVGLAGILPDEVPLIRVEDSLAMGARLAAAFYDLPSANMVTIGV 187 Query: 122 -GTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 G GK++ A ++ + + G + + Sbjct: 188 MGLLGKTTTAWLIRGLLEELGQTVGLVSTIEH 219 >gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] Length = 457 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 84/445 (18%), Positives = 159/445 (35%), Gaps = 41/445 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V +DSRH+ +F A+ G K DG+LF P+A ++ A A+VVS + + Sbjct: 29 GVCTDSRHLPPHAVFFALGGEKFDGNLFAPEA-SRTAAAVVVSR------VEEGMDPSCA 81 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +++V++T + L AS + ++ +TG++GK+S + + + G + Sbjct: 82 VILVEDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQGFRTIATQGNLN 141 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 TPS + + G + + G T+ Sbjct: 142 NHIGVPLSILRATPS-------------DEAAVWEMGMNHSGELAPLCEMTRPKIGIITS 188 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H++Y +++ K L L D + + G Sbjct: 189 IGTSHMEYLGSRENIAREKCTLARCLPEDGFMIFPADCDYADM----IRQSTRAACIDCG 244 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + N + +S+ + P+ G V NAL+AA A G+ Sbjct: 245 IGAGTVRAENPVSTENGTRFILSIPDFCREEVELPVHGRHMVTNALLAAAAGWAAGLAKE 304 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVF 388 + L + + GR T G + D Y +S++ L + + +GR V Sbjct: 305 QIASGLNQARLTGGRL--HCTRINGILVVDDTYNANPDSMQAALHTVAGLSCTGRRFAVL 362 Query: 389 GCGGD---RDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG 443 G G+ + ++G+ A +L D + D +I I + + G Sbjct: 363 GRMGELGAFSEEGHVLVGRTAEELRLDCVV-----SVGTDAARITDAISPNAFTQSLHFG 417 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 + EA D+++ KG Sbjct: 418 SAEEAAEWLRSHTAPGDIVLF--KG 440 >gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] Length = 446 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ G +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ +++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ + AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] Length = 452 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 75/463 (16%), Positives = 173/463 (37%), Gaps = 37/463 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + + + + +N + ++ N+VS D+R + G IF+AI G +G+ FI A+ Sbjct: 1 MTFNEIAKAVNG-KVILRGSKDV-FNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQ 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA +V + +D + + + IL+V++T+K L A ++A+TG++G Sbjct: 59 KGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+S + + G +N + P S V + Sbjct: 116 KTSTKDITASVLRSKFRVFKTSGN--------FNNEIGLP-----LMIFKLDKSYEVAVL 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + + TN+G HI+ ++++ AK+ + + + Sbjct: 163 EMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIV 222 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 +D + K + + + + ++ + +C + + E + Sbjct: 223 NGDND----LLKKHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGE----KLVLN 274 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+ + NA+++ + +G+ + + L+ L + R + V + Y + Sbjct: 275 MPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV-NGENIVIVDDSYNAS 333 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421 +S+ + + + R I V G G++ +G A + D +V Sbjct: 334 PDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVG---- 389 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + K + F E E ++ + K D+ ++ Sbjct: 390 --EFSKAYLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 430 >gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] Length = 446 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ G +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ +++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ + AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] Length = 452 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 85/432 (19%), Positives = 155/432 (35%), Gaps = 39/432 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L + ELI +R IN VS+D+R+I+ G +FVA+VG + D H F Q Sbjct: 6 LSQIAEALDAELIGN---------DRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQ 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++VS S + P LVV +T+ L + ++ +A+TG Sbjct: 57 AVDSGAGALLVSKPVSG---------DVPQLVVKDTKLALGQLGALVHQTCLTPTVAITG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++V + I ++ G F G + +TP V Sbjct: 108 SCGKTTVKEMIASIMEQKGQVLFTAGNFNNEIGVPLTLLRSTPE-------------DDV 154 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A+ G + ++ N+ H++ + A + L S Sbjct: 155 AVIELGANHIGEIAYTTRLVQPDVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLKAGS 213 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301 AI+ D + + + S+ + + + + Sbjct: 214 VAIVNLDSNGGDYWQEVLADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIK 273 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G+ V NAL A L + +G ++ L L+ V GR E + N + I Sbjct: 274 VTLGIIGQHNVANALAATALALELGASLEMIQSGLASLNKVKGRVELIELNQQIKLIDDS 333 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + +++ + R +++ GD +G+ A ++T Sbjct: 334 YNASVPAMKAAADLLAGFKGVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLT--- 390 Query: 420 PRSEDPEKIRAE 431 D + I E Sbjct: 391 -FGADAKAISEE 401 >gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli] gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli K-12] Length = 452 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 165/448 (36%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 A A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GAAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400 >gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 442 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 132/381 (34%), Gaps = 21/381 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + VS+DSR +F A+ G D H ++ +A QG A VV Sbjct: 6 VTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEG-------- 57 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N L+V ++R L A L K ++A+TG+SGK++V V I Q+S + S Sbjct: 58 -NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSD-- 114 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + P+ L + + A+ G + + Sbjct: 115 ----DVLFTQGNFNNDIGVPLTLL---RLTERHKFAVIELGANHIGEIAYTTSLAQPDVA 167 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + A L K AII Y ++ + Sbjct: 168 LVNNVMAAHLEGFGSIDGVATA-KGEIFRGLTKNGVAIINLAHNYQQKWQADIGRHAVQY 226 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + +++ + P GE + NAL A L + +G Sbjct: 227 FAYDNPRADFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGA 286 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +A V + LE +V GR + + Y S++ + ++ + R+ VV Sbjct: 287 TTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNANVGSMKSAISVLQKYPAFRVFVV 346 Query: 388 --FGCGGDRDQGKRPIMGKIA 406 G GD Q +G+ A Sbjct: 347 GDMGELGDNAQLCHQEVGEFA 367 >gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 463 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 94/478 (19%), Positives = 163/478 (34%), Gaps = 54/478 (11%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + E ++ V DSR I+ G +FVA G DGH F Sbjct: 1 MIAMSLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121 + A + + P ++VD+ + A + + PE I+ VT Sbjct: 60 ----------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVT 109 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S + ++C+ G + G + + Sbjct: 110 GSAGKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVL---------------KVDET 154 Query: 182 VTHVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 ++ +E S+ G+ L GI N+G H+ T AK L E + P Sbjct: 155 TRYLVLEYSARGIGHIDYLCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAP 214 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + ++ R V + I V + + + T+ Sbjct: 215 GGVVILNA---DDARVAAMRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGS 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V N L AA + + +G+ + + L + P R + I Sbjct: 272 APVALKLYGAHHVSNTLAAAAVAVELGMAAEAIASVVSGPLSLSPRRMDVFTRADGTTVI 331 Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414 Y +S+ + + + R I V G GD + +G++A DI I Sbjct: 332 DDSYNANPSSMAAAINALADLGKESRKIAVLGYMAELGDETEAAHLQVGELAARN-DIDI 390 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKG 468 V E++ A I G ++ EAI E+L+ DV++V KG Sbjct: 391 VIS-------VEEVAAAIAEGAGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLV--KG 439 >gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 452 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + + Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ Sbjct: 1 MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A + + + PI+ V++T L A ++AVTG++ Sbjct: 61 QDGAGAAFYQKGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + G +N + P I L + ++ Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + S + + + TN+G H+ +++ AK + L + Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + V + + + + + + Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCCVDDRDTTGISFTI-----NNKEHYDL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ G+ + NA +A + +G+ + ++L+ + + R E + I Y Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ + + T+T RI+++ G+ + +G + + T N Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + I + ++ + I L D ++V KG Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIGVLTSDLKAHDRVLV--KG 437 >gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2] gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2] Length = 486 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 103/490 (21%), Positives = 159/490 (32%), Gaps = 54/490 (11%) Query: 12 PELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 ++ L P E + VS+DSR I +FVA+ G + DGH FI + +G Sbjct: 10 ADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRGVRG 69 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 VV + VDNT L A + ++A+TG++GK+S Sbjct: 70 FVVKKGQKIPKDV----PGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTR 125 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 +I R + G + + V + + Sbjct: 126 KMTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLD-------------HEWAVVEMGMN 172 Query: 191 SHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 HG + HRL I G TN H++ T + AK L + A++ D Sbjct: 173 -HGGEIHRLGSIALPDIGVITNTSHCHLEGLGTVEGVARAKAEL-LPHVRVHGSAVLNLD 230 Query: 250 DAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 D N C + +S + Sbjct: 231 DPRFPIFSAAVRANTAIENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVF 290 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P F V NAL AAG +A GI ++ + LE PGR + I Y Sbjct: 291 LHTPARFMVSNALAAAGAALAAGISMDVIKQGLEAFEPEPGRMHLEPGFNHTTIIDDTYN 350 Query: 364 HTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL-----------D 408 S+ L+ + R +G I V G + G MG +A Sbjct: 351 ANPGSVGAALETLERVTQNGVGIAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGP 410 Query: 409 LADIAI---VTDDNPRSE----DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNK 458 +AD I V P S ++I A+++ P + KG+R + + L + Sbjct: 411 MADHVIHGAVKAGFPGSAAMTGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQLKR 470 Query: 459 QDVLVVAGKG 468 +AG G Sbjct: 471 TTT--IAGGG 478 >gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] Length = 473 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 177/466 (37%), Gaps = 41/466 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 LI+ ++ F + +S DSR + G +F I G+ DGH F A AQGA +VV Sbjct: 10 LISAMNGFTVGCLPETFPGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHAYAQGAGVLVV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + P++VV + + L A + I+A+TG+ GK++ + Sbjct: 70 ----AENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +Q + G + + P+ LA+ + E + Sbjct: 126 KQALETVGKVHANLASFNNCWGV----------PLTLARM-----PIDSDYAIFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + + T + H+++ ++ + +AK +FE L K+ A++ ADD Sbjct: 171 KDEIRPLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEG-LDKDGIALLNADDH 229 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++++A G + + Q K+V + N + + ++ KD PG+ Sbjct: 230 FFSYLLQKAKQFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQ 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHT 365 V N L C A+G D A V+ L + + GR I Y Sbjct: 290 HMVQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNAN 349 Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDD 418 S+ L GR I + G GD ++ R ++ I + + + Sbjct: 350 PTSMRAALDLLATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLV-- 407 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 ++ + + ++ + N E + ++ D++++ Sbjct: 408 ---GKEMKFLANDLSSHV-NVCHSENIEEILPLVFSEISNGDLIMI 449 >gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] Length = 456 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 83/476 (17%), Positives = 174/476 (36%), Gaps = 49/476 (10%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + + + +++ I VS+D+R IQ +F+ +VG K DGH F A Sbjct: 1 MLKATLETIAKIVGGTLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A + + A I++VDNT + AS ++ +TG+ Sbjct: 61 VKKGAVATLWDKRHPTPYLDAG------IIIVDNTLQAYQKLASSYLKATGAKVVGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+ + I + + +N + P I + V Sbjct: 115 NGKTGTKDILASILKENFRVHNTAKNL--------NNEIGVPKTI-----MEMDLDDEVV 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + G + + + TN+G H+ T++ AK E L + Sbjct: 162 VLEMGMERFGEIKTLTNIARPDIAVITNIGDSHLLELGTKENIARAKF-EILEGLKPDGV 220 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I DD +EV+K + + + ++ + + +I ++ + Sbjct: 221 FIFNNDDEVLREVIKEYTITQKVIKIGTREDSDVIIRPIRSDEEGSSFSI----GEYAYS 276 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P G+ Q+YNA VA + +G++ ++ L ++ + R E + +S Y Sbjct: 277 IPFIGKHQIYNASVAITIAGLLGMNYGDIVRGLSRVKLTGMRMELIHLSSFDVLNDC-YK 335 Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDD 418 SL ++ + T+ I++ + + +R + + + D I D Sbjct: 336 SNPQSLTSCIETVYTMKGYKNKILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGD 395 Query: 419 NPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + EI +G + E + E++++ +++V KG Sbjct: 396 ---------LAKEIYNGANRNFNVNNLFHFETNEEVVNKVRELISEDTLIMV--KG 440 >gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0031] Length = 474 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 459 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 173/472 (36%), Gaps = 41/472 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK ++ +++ I P + +I +D+R ++ ++F+ +VG + DGH Sbjct: 1 MK--NMTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGH 58 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 FI A ++GA A + P ++V++T+ L A+ + + Sbjct: 59 DFIEDAFSKGALASLSERKLENVSG--------PYIIVEDTKLALKQIATDYRMQLNIPV 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + V G+ GK+S + + G + P+ + + Sbjct: 111 IGVIGSVGKTSTKEMLSSVLATKFNVLKTEGNFN----------NEIGLPLTICRIKDE- 159 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V V + S G + HRL I K TN+G+ H+++ +++ AK +FE Sbjct: 160 --HQVAVVEMGISDFG-EMHRLGDIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEH 216 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + + + DD A G + G G+ + + A + Sbjct: 217 MPKNGTVILNGDDDKLIN-----ADTLGLNKIFYGLNGQEVSASDIVAEGMTGTRAVINL 271 Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + F+ LPG V NAL AA + +G+ + + + LEK + GR + Sbjct: 272 FGESFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTIAGRNNVIEVRDIT 331 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI 412 Y S++ ++ + GR I V G GD ++ +G+ D Sbjct: 332 IIDDC-YNANPVSMKASIEVLGK-APGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIG 389 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + T + SE+ ++ N + + ++ D ++V Sbjct: 390 YVFTVGDL-SEEINNSLSQKNSSCMAHHY-TNVEAMLEDLLPIIRGGDTILV 439 >gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia proteamaculans 568] gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia proteamaculans 568] Length = 453 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 159/454 (35%), Gaps = 43/454 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +I EV++D+R + G +FVA+ G + D H F V++ S Sbjct: 19 GADCQIVEVTTDTRQVTTGCLFVALKGERFDAHDF---------AVDAVAAGAGALLVSK 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P LVV +TR L A+ + + P ++A+TG+SGK+SV I + G Sbjct: 70 RLLVEVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECGEVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L + + A+ G + + Sbjct: 130 YTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHIGEIAYTTALTRP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 NL H++ + AK +F L + ++ + Sbjct: 177 QTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAILNADNNDWPHWQSMLDGKTV 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R +G V Q + D PLPG V NAL AA L ++ Sbjct: 237 WRFSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAAALAMS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G V + L++L VPGR + + + Y S+ + + + R+ Sbjct: 297 AGASLEAVRQGLKQLQAVPGRLFPIALSDHQLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA--------IVTDDNPRSEDPEKIRAEI 432 +VV G + +G+ A LA D ++T+ + E + A I Sbjct: 357 MVVGDMAELGAEAEECHRQVGE-AARLAGVDKVLGVGPLSQVLTEASGNGEHFQDKAAVI 415 Query: 433 I--------HGIPGFIEKGNRIEAIRTAIEMLNK 458 H + + KG+R A+ + L + Sbjct: 416 ARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449 >gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] Length = 467 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 51/473 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + L L ++ + +++D+R +Q G F+A+ G + DGH F+ QAIAQ Sbjct: 7 LTQLSQILAVSLPPQCDTPQDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQ 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +V + ++ + N P+L V ++ A + I+ VTG+ GK Sbjct: 67 GAVCAIVDADFTADN------PNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + +G + + P L + S + Sbjct: 121 TTTKELI----------AAVLGTQGNVHKTQANYNNEIGVPKTLLQLNS---HHNYAVIE 167 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G + G TN+G HI ++QA AK L E+ + Sbjct: 168 MAMRARGEIALLTQIARPTIGLITNVGTAHIGRLGSEQAIAEAKCELLAEMPQNSVAVLN 227 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 G + + + D PL Sbjct: 228 CDHHRLMDTAATVWSGETLTYGLEGGDLQGELIDAHTL-----------RVEGLDLPLPL 276 Query: 307 PGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PG N L A + + L+ + + GR + ++ + Sbjct: 277 PGYHNASNFLAALAVFKIIQGQGLSPTELYTPLQTGLSVQLPEGRAKRYELSNDIVILDE 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y S+ LK + R I V G G+R +GK+A +L D + Sbjct: 337 TYNAGLESMIAALKLLMETPGQRFIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFIL 396 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAI-----RTAIEMLNKQDVLV 463 D E I +E G E I IE + D ++ Sbjct: 397 AD-----AEEAIAMATGAKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRIL 444 >gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] Length = 463 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 80/472 (16%), Positives = 155/472 (32%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ K+ ++ + V+ DSR +Q +FVAI G + DGH FI Sbjct: 1 MK--NMSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + QGA + + P + V + + L A ++ + Sbjct: 59 PQVMDQGAICSLSEQDLGDVTY--------PYIQVASCTEALKDLAEHYRRSLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + + G + P+ + Sbjct: 111 SGSVGKTSTKEMIASVLSEKYCVLKTEGNFN----------NEIGLPLTVFNLRKE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G + + TN+G H++ T+ K +F+ + P Sbjct: 158 EVAVLEMGISHFGDMEPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPD 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + DD +R L ++K+ T F Sbjct: 218 GTVILNGDDDKLRGYTSERGIQPVYFGLDPACPFHAEQIQKMGLKGTV--ATFVTPSSSF 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG+ + NAL + A+G+ ++ +EKL + GR + Sbjct: 276 SAHVSIPGDHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNNLIEAEHYTIIDDC 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTD 417 Y S++ L + R + + G G+ ++ +G A+ ++ Sbjct: 336 -YNANPASMKSSLDVL-AFADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICI 393 Query: 418 DNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV 464 +E R + + EA R ++L +QD ++V Sbjct: 394 GTLSAEMANAARTASEASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLV 445 >gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] Length = 477 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 84/415 (20%), Positives = 150/415 (36%), Gaps = 33/415 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + +L+ ++ P+ I +S DSR IQ G F AI G++ DGH + A+A Sbjct: 3 LLWTIEDLVAAMTGRPVGTMPPGITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIAVAN 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +VV+ A A R P++VVD+ + L A + I+AVTG+ GK Sbjct: 63 GAALMVVNEA----KLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++Q+ SG + + P+ LA+ + + Sbjct: 119 TTTKEMLRQVLAPSGEVHAAVASFNNHWGV----------PLTLARMPA---TAQYGVFE 165 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G + ++ T + H+ + +AK +F + + Sbjct: 166 IGMNHSGEITPLVQMVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLN 225 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + K + S G K L + ++G+ + + Sbjct: 226 HDNPYFEYLEHKAQEAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIA 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--Y 362 PG NA+ A G +G D ++ L +L V GR E G +D Y Sbjct: 286 APGRHIAENAMAALGAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESY 345 Query: 363 AHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALD-LADIA 413 S+ + + G I V G MG+ + + AD+A Sbjct: 346 NANPASMRAAIAVLAAAQPRGEGHRIAVLGDML--------EMGEFSEELHADLA 392 >gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] Length = 452 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 173/474 (36%), Gaps = 34/474 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ + VS+D+R IQ G +FV ++G + DGH ++ QA+++GA+A + Sbjct: 6 QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +++ + ++++ +L V++T L A + ++AVTG++GK++V Sbjct: 66 WATSVPV---PESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDL 122 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + G G P+ + + + + + S Sbjct: 123 LYATLAPLGSIYKTQGN----------YNNHIGLPLTVLSMPA---NCQTLILEMGMSGL 169 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + TN+G H++ +++ A L + D+ Sbjct: 170 GEIELLSKLATPDIAVVTNIGESHLEQLGSRENIAKA-KMEIALGLKPTGVLFLDGDEPL 228 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +K I + + A + TI + + L GE V Sbjct: 229 LSHYVKEGVQTVGF-----SSENKIVIHDLEAREDGYSFTID----EHSYDIKLIGEHNV 279 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA A + + +G+ V LE++ + R E + + Y + S++ Sbjct: 280 KNAAYAVSVALHLGLSPEQVARSLERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAA 339 Query: 373 LKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +K ++ + + V G + + + +A ++ + T E + I E Sbjct: 340 IKTLKAYPNYEKKVAVLGDIYELGIDEEALHRSVADEITEPI--TTAVLVGEKGQWIADE 397 Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV--AGKGHETVHIVTNGEKK 481 + F+ + EA IE L +V+ A +G E IV +++ Sbjct: 398 MKRRGSNIPFVSFVEKEEATDY-IEGLLDGKTVVLFKASRGLELESIVDKLKRE 450 >gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] Length = 456 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 93/467 (19%), Positives = 158/467 (33%), Gaps = 36/467 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ I + + + V +DSR I G +FVA+ G + DGH ++ + A Sbjct: 1 MLKPWLLSEIAADLSARLIGDDVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A +V + + P L+V +TR L + + AVTG+SG Sbjct: 61 KGAVAALVEREVA--------NAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV + I + G + + + +P+ L + + Sbjct: 113 KTSVKEMLAAILRA--------GLNGAVLATRGNLNNDLGAPLTLLELAPEHR---AGVI 161 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + TN G H+ + AK + E L + Sbjct: 162 ELGANHVGEIAYTVSLTRPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGLAQDGVAVL 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D A+S + A + + F Q T+ Sbjct: 222 NLDDKAFSTWQRRAAGHQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLN 281 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L GE V NAL A A+G+ + + LE L V GR + I Y Sbjct: 282 LLGEHNVANALAACAAAHALGLPLVAMAKGLENLQPVKGRAVAQLAPNGMRVIDDSYNAN 341 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPR 421 S+ + + SGR ++V G G+ +QG R +G+ A D R Sbjct: 342 PVSMCAAVDILAGF-SGRTVLVLGDMGELGEWAEQGHR-DVGRHAAGKVDALYAVGPLMR 399 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E I A+ L++ KG Sbjct: 400 F--------AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLI--KG 435 >gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806] Length = 454 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 86/463 (18%), Positives = 159/463 (34%), Gaps = 40/463 (8%) Query: 6 LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L +L++ + + + ++ +++DSR I++G F+A+ G+ +GH FI AI Sbjct: 5 LSLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA A++V S+ SN P+ +V NT K A + ++A+TG+ Sbjct: 65 ARGAAALIVDQPVSVN-----YSSNIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSV 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G + +N + P + + Sbjct: 120 GKTTTKELIASVLATRGKVHKTLAN--------YNNEIGVPKTLLELDETHDSA-----V 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G + TN+G HI + ++ P S A Sbjct: 167 IEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGRLGS-ESAIAEAKCELLSESPSSSIA 225 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ D E KR L + ++ DF Sbjct: 226 VLNYDHPLLTETAKRVWQGETITYGFFGGDIVGELLDLT----------TLRVNGLDFNL 275 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G N + A + +GID L+ K+++ GR + + Y Sbjct: 276 PLSGRHHALNFMAALAVAKILGIDW-TSLQQGIKVNLPSGRAKRYQLEPDILLLDETYNA 334 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420 S+ L ++ R + V G G + +G+ L D V D+P Sbjct: 335 GLESMLAALDLLKATPGQRHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDP 394 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 K AE G+ + I E+++ D ++ Sbjct: 395 ----EAKFIAEAATGVA-CECFQTHADLINRLKEVIDSGDRIL 432 >gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 455 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 131/389 (33%), Gaps = 28/389 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + + VS DSR IQAG +F+A+ G + DGH ++ + A+GA A +V Sbjct: 22 DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 S P L+V +TR L + + AVTG+SGK++V + I + G Sbjct: 74 DSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRGPVHAT 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P + + AS G + + + Sbjct: 134 RGNLNNDLGAPLTLLELAPE-------------HTAAVIELGASRIGEIAYTVAMTRPHV 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N G H+ + A E L A++ DD RA Sbjct: 181 AIINNAGTAHVGEFGGPEKIVEA-KGEILEGLDSAGIAVLNLDDKAFPIWKARAAGRQVL 239 Query: 267 VLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ + + L G V NAL AA A+ Sbjct: 240 SFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALAAAAAAHAM 299 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ ++ L + V GR + I Y S+ + + SGR + Sbjct: 300 GVSLFGIVTGLNAVQPVKGRTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGF-SGRTV 358 Query: 386 VVFGCGGD----RDQGKRPIMGKIALDLA 410 +V G G+ +QG R + A ++ Sbjct: 359 LVLGDIGELGEWAEQGHREVGAYAAGKVS 387 >gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus torques L2-14] Length = 461 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/420 (17%), Positives = 139/420 (33%), Gaps = 33/420 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK + + + + + +R+++ V+ DSR + +FVAI G + DGH FI Sbjct: 1 MK--HMTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + GA + D+ P + V + + L A ++ + Sbjct: 59 PQVMEAGALCSLSEQDLGDVDY--------PYIRVSSCTEALKDLAEHYRRSLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + G + P+ + Sbjct: 111 TGSVGKTSTKEMIASVLSEKYNVLKTEGNFN----------NEIGLPLTVFNIREE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G + + TN+G H++ T+ K + + + PK Sbjct: 158 EVAVLEMGISHFGDMKPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPK 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKD 299 S DD + + V H++ + K Sbjct: 218 GSVIFNGDDDKLKSY---TSRDGRTPVYFGLTSSCPFHVENIERKGLKGTYAEFVTPTSR 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F +PG+ +YNAL + A+G+D+ + +EKL + GR + Sbjct: 275 FHAHISIPGDHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAGRNNLIEAKHYTIIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV 415 Y S++ L + R + + G G+ R + A D+ + Sbjct: 335 C-YNANPASMKSSLDVL-AYADTRKVAILGDMGELGADELAMHREVGAYAAFKNTDVLVC 392 >gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 464 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 69/420 (16%), Positives = 140/420 (33%), Gaps = 30/420 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + + P I+ VS DSR I +F+ I GN DGH F+ Sbjct: 1 MRLS---LDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ +GA AI+ S + P+++V +T L + A ++ + Sbjct: 58 LKAVEEGASAILASHNPFEGEVP------VPVILVPDTLNGLKVLAQAARKMTKAKVIGI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK++V V Q+ G + +T + + Sbjct: 112 TGTAGKTTVKELVAQLLTSKGKVAKNYLNFNTQIGMSFSILAAQGD-------------E 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V S+ + + N+G H+ Q ++ L Sbjct: 159 DFWVMEVGISNPQDMEELGTILTPDIALIINVGPGHLSGLNKQGVAYHKAQLLRYMKDEG 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + +K + + Q ++ + + ++ Sbjct: 219 LGIVSLDYPDLVKE--VKELRSGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIV 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P G F + + L +A + +G+ S + + L + + RF + I Sbjct: 277 DVTSPFLGNFGMESVLASATIAHKLGVSSDSIKQQLFQAILPQNRFSCFTHGNW-LCIDD 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG-----CGGDRDQGKRPIMGKIALDLADIAIV 415 Y S+ ++++ ++ + +V+ GD + + +GK I Sbjct: 336 SYNANPLSMNAVIESTYKLSDEKKPLVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIF 395 >gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] Length = 474 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 84/474 (17%), Positives = 163/474 (34%), Gaps = 33/474 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK + L L+ L R + +S D+R + G +F AI G DGH F+ Sbjct: 1 MKAESLWSGLG--LVGALRARVSGGLPRDASGISIDTRTLAPGDLFFAIKGEARDGHDFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA VV A++ + P+ VV + ++ L +R + ++ V Sbjct: 59 AAAFERGAAGAVVDEAHA-----GALAGRAPLYVVKDVQESLERLGARARERSAAYVVGV 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + R G + + P+ LA+ + Sbjct: 114 TGSVGKTSTKEMAAAVLSRFGAAHASAASYNNQWGV----------PLSLARMPAATRFG 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 A + + T + H+++ +A +AK +F + Sbjct: 164 VFEIGMNHAGEIAALAPLV---EPHVALVTRVAPVHLEHFACLEAIADAKSEIFSG-VVD 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ DD + +++ A + + + + + + V + G+ Sbjct: 220 GGVAILNRDDETFERMLEAAAASRAAHVFGFGVSEGAQARLLSYDPRENSVEADIFGRRL 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PG N+L + + +D A L + GR + + + Sbjct: 280 RYRIGAPGRHFALNSLAVLTIAHVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTL 339 Query: 361 ---DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAI 414 Y S+ L+ + GR + V G + + ++A DL A + + Sbjct: 340 IDESYNANPTSMRAALELLGAERPIGRRVAVLGDMLELGPSAAELHAELASDLEAAGVDL 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + P E + G + EA+ ++ L DV+++ KG Sbjct: 400 LFTAGPLMARLYYAAPERMRGAHRATARE-LEEAV---LDSLGAGDVVMI--KG 447 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 79/417 (18%), Positives = 147/417 (35%), Gaps = 36/417 (8%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 DL+ + + I P + +N +S DSR I F AI G DGH FI A Sbjct: 8 HDLLQAIQG---HSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA +VV++ ++ + P+ VD+ L+ A + I+A+TG+ Sbjct: 61 VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + + IG P+ LA Sbjct: 117 VGKTTTKEMLTIALSSIKKTYACIGS----------YNNHIGVPLTLA---RMPVDVDFG 163 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + S G + ++ T + H+ + +AK +FE L K Sbjct: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGT 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + DD++ + + ++H G + + L+K + + + ++GK + Sbjct: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYV 360 + G N L+ G+ + D ++ L H GR + ++G + Sbjct: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 Query: 361 D--YAHTSNSLEMIL---KNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409 D Y S++ + I GR I V G G+ Q + ++ Sbjct: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 >gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis CPHL_A] gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis CPHL_A] Length = 404 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 6/248 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 39 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 99 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK LF+ + Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275 Query: 244 AIIYADDA 251 + D Sbjct: 276 TAVVCIDD 283 >gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 481 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 77/449 (17%), Positives = 149/449 (33%), Gaps = 31/449 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--- 88 V +DSR ++ G IFV + G DGH ++ QA GA I+V+ A + Sbjct: 33 NVVTDSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAIDDARAM 92 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 NT ++ V + A + +TG+ GK++V V + + + G Sbjct: 93 NTSVISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLPSAMNTYKTKG 152 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +++ ALS + + + G + I Sbjct: 153 NFNSLIGLP-------------LTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAI 199 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266 T +G H++ +++ F AK + + P + + +D + N Sbjct: 200 ITKIGVSHVERLGSRENIFRAKSEIVNHIKPGGTLILGVDEDEQYLKKENFTGNFNVIEV 259 Query: 267 --VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G ++ V + S + G NA +A + Sbjct: 260 TAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVTINTHGIHNALNAGLAIACGL 319 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ID + E L+ ++ R E I Y + S+ L+ + I+ GR Sbjct: 320 QFDIDLESIKEGLKNVNFTAKRLEI-KEKGGITFIDDSYNASPESMSSALRVLSQISKGR 378 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRS--EDPEKIRAEIIHGIP 437 ++ V G G + +G++ DL + I + R E + AEI Sbjct: 379 MVAVLGDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGEKGRGYIEGFSE-AAEIEGKKN 437 Query: 438 GFIE--KGNRIEAIRTAIEMLNKQDVLVV 464 + + + +++ D +++ Sbjct: 438 DVQIVWIEDSKKCRDACFKHISEGDWVLL 466 >gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] Length = 476 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 166/476 (34%), Gaps = 55/476 (11%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + I + P + I +S DSR I+ G F AI G++ DGH F+ A+A GA V Sbjct: 10 DFIAGANGTPKGELGQDITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGTALANGASVAV 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS+ D ++ S L+VD+ + A + I+AVTG+ GK+ Sbjct: 70 VSA-----DKLDSLPSTGRYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGKTGTKEA 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ RSG + + P+ LA+ + + S+ Sbjct: 125 LRLALGRSGKVHASVASFNNHWGV----------PLTLARMPAD---VDFGVFEIGMSAP 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ T + H+++ + + AK +F+ L P + ++ + Sbjct: 172 GEITPLVRMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQF 231 Query: 253 S-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +A + Q + V V+ + G+ + G Sbjct: 232 DLLMFLAKADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHH 291 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNS 368 V+N+L + +G + AL E L + GR E G +D Y S Sbjct: 292 VHNSLAVLTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPAS 351 Query: 369 LEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L + GR I V G + + + +++ +P +E Sbjct: 352 MRAALSVLGEAEITPPGRRIAVLGDMRELGEDGPKLHAELS------------DPVNE-- 397 Query: 426 EKIRAEIIHGIPGFIEKGNR----------IEAI---RTAIEMLNKQDVLVVAGKG 468 + P + +R +A ++ + DV++V KG Sbjct: 398 -AGVEALFCVGPQMKQLWDRVPQGLRVMYAEQAADLQDHLLQEIRSGDVVMV--KG 450 >gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola F0289] Length = 437 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 119/364 (32%), Gaps = 23/364 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR G IF+A+ G DG+ F A+ +G VV + + Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + P ++ +TGT+GK++ + + + Sbjct: 70 ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + + + AS G + + ++ G TN+ Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + +A E+ + + Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNADLMEMAAQREFSRIITYGQDE 236 Query: 273 QGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 CA K + ++ L G + + N L A + + G+ Sbjct: 237 TADVQGNVVSCAPFLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTP 296 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V LE R + + I Y +S+ ++N R + + + G Sbjct: 297 QQVCHALENYIPHNNRSQLT-ETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAILG 355 Query: 390 CGGD 393 + Sbjct: 356 DMRE 359 >gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T17] gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T17] Length = 276 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 6/228 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 39 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 99 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKA 263 >gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T17] Length = 262 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 6/228 (2%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + + + +R + V+ ++ + G +F A+ G+ G + AIA+ Sbjct: 25 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 GA A++ A + R+ P+LV R L A+ +YG E ++ +TGTS Sbjct: 85 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V+ + +G + IG + LTTP L L+ + +GV Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKA 249 >gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] Length = 452 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 160/447 (35%), Gaps = 30/447 (6%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + VS+D+R +Q G +FVA++G++ DGH ++ QAI +GA A+++S + Sbjct: 17 KHRGANIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRMEVT- 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P L V +T + L + ++A+TG+SGK++V + + ++ Sbjct: 76 --------VPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMMATLLRQQN 127 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + +P+ L S + + AS G + + Sbjct: 128 EVLVTRGNLNNH----------IGAPLTLL---RLSDSDDYAVIELGASGLGEIAYTAEL 174 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + TN G H++ + + + L + A++ AD Y +E KRA Sbjct: 175 ARPTVSILTNAGNAHLEGFGSVEGIVKT-KGEIIDALADDGVAVLNADSPYFEEWQKRAG 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + + T+ + + + G+ V+NAL A Sbjct: 234 SRRVISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALACAAA 293 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 C+A+ + L++ L+ V GR + I Y S+ + + + S Sbjct: 294 CVALDMPPKLIVSGLQLFEGVEGRLLEKQGLNGSRIIDDSYNANPASVRAAVDVLAS-RS 352 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 I V G + ++ A A + + E K F Sbjct: 353 SHTIFVLGDMAELGVETHLAHAEVGA-YAREAGIDEFFALGEFSRKAADAFGDNAHWFAS 411 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 N IR + LNK ++V KG Sbjct: 412 HDNL---IRFLTKKLNKDVTVLV--KG 433 >gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster bacterium] Length = 419 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 138/404 (34%), Gaps = 48/404 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ E+ + + + IN V +D+R G +FVA++G D H +I A Sbjct: 1 MLQTKLKEIAKIFNSQALLGSDIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEK 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA AI+ S +++N P++ VD+T LS A+ ++A+TG++G Sbjct: 61 MGAVAIIASK---------QVKTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + I + G + + P + Sbjct: 112 KTTTKNMLANILNLKAPTLKTQGNLNNHLGVPMTLLMLEP-------------KHQFAVI 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G +H D TN HI AK ++ Sbjct: 159 EMGANHLGEIKHLRDITHPHIAVVTNTLDAHIGEFGGFNNLVKAKGEIYHT--------- 209 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + G + N Q ++++ + Sbjct: 210 ------------NSQNIVNTNTTFTGDISFGKDGDVFASNINSHQFDLNIKNEKIAVSLQ 257 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 L G+ + N+L A+ A+ ID + + LEK GR + +G I D Y Sbjct: 258 LLGQHNIENSLAASACAYALDIDINTIKKGLEKTQAEKGRLTIIH--RQGLTIIDDTYNA 315 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + S+ + + + +I V+ G+ + +GK+A Sbjct: 316 SPQSMRAAIDALLSFDGEKIAVLGSMAELGNDSKTFHQQIGKLA 359 >gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] Length = 478 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 34/445 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR I G IFVA+ G + DGH F+ QA +GA +VS + + S+ + Sbjct: 38 VVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARY 97 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV +T + + A+ K ++ + G++GK++ + + G + Sbjct: 98 LVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLRARYSVHMSEGNFNN 157 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L V V + + G + + G TN+ Sbjct: 158 H----------LGVPLTLFG---LREKHEVAVVEMGINHPGEMELLAEIAAPTHGMLTNI 204 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G +H+++ + NA+ L+ + + +D+ E + Sbjct: 205 GHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNREDSRLTEAAA--GIPSTVGYGIAL 262 Query: 273 QGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 +G+ + + + + T+ + G V NA+ AA + G+ Sbjct: 263 EGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVGFHFGLTQEE 322 Query: 332 VLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388 + LE+L R EF + Y +S+ L + + +G+ + V Sbjct: 323 IAGGLERLKPEEGWKRLEFQRAGGI-TIVNDTYNANPDSVRNALDLLCELPVTGKRVAVI 381 Query: 389 GCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 G G + +G+ A L D E G+ Sbjct: 382 GDMLELGGVSSPEHEEIGRYAASLDGLDAFY-----TFGEQAALCCR--TAGMKCAGHFM 434 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 + E E L+ DVL++ KG Sbjct: 435 DHGELQHLLHESLSPGDVLLL--KG 457 >gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894] Length = 452 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 95/440 (21%), Positives = 155/440 (35%), Gaps = 50/440 (11%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + + + I+ V++D+R + G +FVA+ G + D H F QA A GA A++VS Sbjct: 9 LAAILNGELHGADADIDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P LVV +TR A+ + + P ++A+TG+SGK+SV Sbjct: 69 RKLDI---------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + + G + TP + + A+ G Sbjct: 120 AILGECGNTLYTAGNLNNDIGVPMTLLRLTPE-------------HEYAVIELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + A NL H++ + AK +F LP AI+ AD+ Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPANGIAILNADNNDWL 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + S + + + T+ D D L PLPG + N Sbjct: 226 NWQSVIGDRKVWRFSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ L +A+G + L KL VPGR V + Y S+ + Sbjct: 286 ALAASALAMAVGAPLQAIKAGLAKLKAVPGRLFPVHLGENQLLLDDSYNANVGSMTAAAQ 345 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + R++VV GD + +G+ A Sbjct: 346 VLSEMPGYRVMVVGDMAELGDEAEACHQQVGEAAK------------------------- 380 Query: 433 IHGIPGFIEKGNRIEAIRTA 452 GI + G E I A Sbjct: 381 AAGIDKVLSVGTLSEGISRA 400 >gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Weissella cibaria KACC 11862] Length = 454 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 84/478 (17%), Positives = 167/478 (34%), Gaps = 48/478 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E+ ++ + + + + DSR +AG +FV +V DGH ++ Sbjct: 1 MKL------TLQEMATAINAEIINAADVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA + + + + ++ P LVV +T A + ++A+ Sbjct: 54 ASAVANGATVTLWQADHP------NVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G++GK++ FV I + + +N + P+ I LS + Sbjct: 108 SGSNGKTTTKDFVAAIGASTFKTVKTPAN--------FNNEIGVPTTI-----LSMPADT 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + G + + T +G HI++ +T++ A ++ + Sbjct: 155 ELLVIEFGMDRPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERI--ADGKMEIIAGLQ 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++Y D + +RA + L N T + Sbjct: 213 PNGVLVYNGDE--PLLRERAGQHAFLHTATFGLNPDNDLYASTIAMNPVGATFQTDKSAM 270 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G + V NAL A + I +GI + + L + + R E++ N G + Sbjct: 271 TYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALAEAPITENRTEWLAGNFGGKILSD 330 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIV 415 Y + + +L +GR I V G + + + +A L + Sbjct: 331 VYNSNPTAAKEVLHFFAETPVTGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVYL 390 Query: 416 TDDNPRSEDPEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D +++ G K ++ I L D +++ KG Sbjct: 391 VGD------IMASLEDVLSVNYPAGTVKRYSKDDKATLIADLQADLTADDAVLL--KG 440 >gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] Length = 459 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 96/483 (19%), Positives = 173/483 (35%), Gaps = 63/483 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + QW++ ++ VS DSRH++ G +FV + G DGH ++ Sbjct: 3 MKLAEIAKAINAQ------NEIEQWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A + +S + L + S+ P+LVV + K L K ++AV Sbjct: 56 ETAFTNGAAATLWASDHELTN------SDHPVLVVTDPLKALQELGKYYLRKINPIVVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + P+ L + + Sbjct: 110 TGSNGKTTTKDMIASILSTQLNVTKTYANFN----------NEIGVPVTLLNMEA---NT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G + T +G HI++ T+ +AKM + L Sbjct: 157 EVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKED 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + +RA N + G Q ++ E D Sbjct: 217 GLFVY----DGDEPLLNERAANITQQTTRFGRQLTDDLYATSVNAGSRSIEFKVNEWPDE 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ GE+ V NAL A + + I + L + + R E+ + + + Sbjct: 273 QFTIPMVGEYNVNNALAAMAVAKRLHISPNHIKTALANVELTENRAEWFKSKNGAQILSD 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK + + GR I V G + + + +A + Sbjct: 333 VYNSNPTAAKQVLKTLAEMPVQGRRIAVLGDMLELGEAAPRLHASLAEQI---------- 382 Query: 420 PRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRT-----------AIE-MLNKQDV 461 +P +I+ AE+ H E+G AI A+E L+ D+ Sbjct: 383 ----NPAQIQEVYLVGAEMAHLQAKLQEQGYPAAAIHYYQADQLDQLTAALEADLHPADM 438 Query: 462 LVV 464 +++ Sbjct: 439 VLL 441 >gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] Length = 470 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 147/402 (36%), Gaps = 27/402 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + VS+DSR G +F+AI G++ D H F+PQ + A++V+ Sbjct: 24 VRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLVAR--------TPEN 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P + V +TR+ L A + ++AVTG++GK++V + I + + ++ Sbjct: 76 WSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ P+ L + + + V + + G + + Sbjct: 136 ATAGNFNNDI-------GLPLTLFRLHAAHR---LAVVELGMNHPGETEQLAKLAEPTVA 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N R+H ++ T +A L E A+ ADDAY+ A Sbjct: 186 VVNNAQREHQEFMATVEAVALEHA-SVIHALSPEGTAVFPADDAYASIWRVAATGNRIID 244 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + V + ++++I D + G +NAL A +A G+ Sbjct: 245 FALNNAERTTEA-AVQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNALAATSAALAAGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 + LE V GR + + G + D Y +S+ + + + S R Sbjct: 304 SLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDVLASRESPR 363 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 ++V+ G GD +G A D D R Sbjct: 364 VLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDASRD 405 >gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex degensii KC4] Length = 464 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 86/467 (18%), Positives = 155/467 (33%), Gaps = 36/467 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAI 64 L E++ + +R + V +D+R I G +F A+ G + +GH F+ +A Sbjct: 4 LEAGRLAEIME--ARLIRGSPDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAEAG 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA VVS + + IL V + L A + ++ VTG++ Sbjct: 62 AKGALGAVVSR-----LPEQPLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGST 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G + P Sbjct: 117 GKTTTKDLLAAVLAVRHRVLATRGNRNNEIGVPLTLLELGPE-------------HEFAV 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + G + A TN+G H++ + +A A + +P E A Sbjct: 164 VEMAMRGEGEIAALSALAEPNAAVITNIGEAHLERLGSVRAIARA-KGEILDYIPPEGFA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ A+ + +E R + + L + + ++ Sbjct: 223 VLPAESPFIEE-EARRCRGKVIYFGESDKAQVRLLSYTSLGEKGCVFRVRTATGEEEYQL 281 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG N + +G V E ++ R E I Y Sbjct: 282 PLPGYHNALNCTAVIAIARQLGFSPEEVQEGFRRVQTSGMRLEIEHWRGF-TVINDAYNA 340 Query: 365 TSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ L+ + + GR + V G G+R +G+ A +AD+ +V Sbjct: 341 NPASMAGALEVLAELGKGRRKVAVLGDMLELGERTVAAHREVGEKAAAVADLLVVV---- 396 Query: 421 RSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + A + G+P + EAIR + L +VL+V Sbjct: 397 -GERARDLAAGALSAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLV 442 >gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 93/451 (20%), Positives = 162/451 (35%), Gaps = 45/451 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R +Q G +FVA+ + DGH F A+ +GA A++VS+ + Sbjct: 27 SGVSIDTRTLQPGDLFVALT-AQRDGHDFAQAALDKGAAAVLVSNPEACSG--------- 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P LVV+N L + + VTG+ GK+SV + + ++G + + Sbjct: 77 PRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSVKEALAAVFIKAGPAHWSEKSY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + G ++ T Sbjct: 137 NNHWGV----------PLTLARMPEATR---HAVFEMGMNHKGEISELTRMVRPHVAMIT 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H++ + +A +AK +FE L + A+I ADD ++ +M+ +G + Sbjct: 184 KIAPAHLENLGSMEAIADAKAEIFEG-LEADGVAVIPADDEFAPRLMQAVQGSGAGFMLD 242 Query: 271 G--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + + + V GK DF LPG Q NA + G+D Sbjct: 243 FGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAAALGAGVD 302 Query: 329 SALVLEHLEKLHVVPGR----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITS 381 L L+ L +L GR + + + Y S+ + + Sbjct: 303 PDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLKLRKPSGQ 362 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R I V G + R + +A L D I + R+ + + Sbjct: 363 DRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARA------LMDALPAEH 416 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 AI T E+ DV++V KG Sbjct: 417 RAAWCETAESAIETLSELARDGDVVLV--KG 445 >gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 451 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 171/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+++ + +I+ V DS+ I+ G +FV I+ K DGH ++ Sbjct: 1 MNLKKL-----EEVVDGEG-LQESFHYIEIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + Sbjct: 108 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R I H AK +L K Sbjct: 156 ---FLILEMGMSEKGQIRNLSIIAQPDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGLK 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +Y D ++ + N + L ++ V + Sbjct: 213 DEGLCLYNGDE---PLLLKNKNLSSITCKAFGEKYTNDLFPTNVQLDEYGVHFKLNDSKI 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ + NA+V + + + + + L ++++ RF+F+ + I Sbjct: 270 QYDVPLHGKHNILNAIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIIND 329 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++T+ + ++V G G + +GK+ + + T Sbjct: 330 AWNASPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT 389 Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E E + E I ++ + ++++ K+D++++ KG Sbjct: 390 ----YGELAEIVAEEARKKYDIGKVQSFNSKAKIAEEVLKVITKKDIILL--KG 437 >gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] Length = 478 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 81/411 (19%), Positives = 146/411 (35%), Gaps = 24/411 (5%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 VS+DSR G +FVAI G++ D H F+ + A+ A +V+ Sbjct: 20 GATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVAARNVSAALVARVPD 79 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 D SA P++ V +TR L A K ++AVTG++GK++V + I Sbjct: 80 GWDVSA-----VPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 134 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ ++ ++ P+ L + + + V + + G Sbjct: 135 AAVGANERLATVGNFNNDI-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 184 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L E A+ A+DAY+ Sbjct: 185 AKIAEPTVALVNNAQREHQEFMATVEAVALEHA-SVIHALNPEGVAVFPANDAYASIWRV 243 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ + V + ++++I F+ + G+ +NAL A Sbjct: 244 AATGNRIVDFALNTAERTTAA-AVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALAA 302 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEMILK 374 +A G+ + LE V GR + I Y +S+ + Sbjct: 303 TSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAID 362 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + S R++V+ G GD +G A D D R Sbjct: 363 VLASHASPRVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRD 413 >gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 69/417 (16%), Positives = 144/417 (34%), Gaps = 36/417 (8%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 DL++ + + ++ E + +S DSR I F AI G+ DGH F+ A Sbjct: 8 HDLLHAIQGKALGEV-------PEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + + A +V+++ ++ + P+ VV++ L+ AS + I+A+TG+ Sbjct: 61 VQKSACLVVINAEM----MASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ ++ +G P+ LA+ + Sbjct: 117 VGKTTAKEMLKLALSSAGKIHVS----------IASYNNHIGVPLTLAQMPAD---AEFG 163 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + S G + ++ T + H+ + +A E L K Sbjct: 164 IFELGMSHLGEIRFLTHLVRPHIAMITTIAPAHLGNFSGIEEIASA-KSEIFEGLEKTGT 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 ++ DD++ + + +++H G L + + ++ + ++GK + Sbjct: 223 VLLNRDDSFFEFLKEKSHLLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAE 282 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYV 360 + G N L G+ + ++ + + GR + G + Sbjct: 283 VVHHAVGRHMAQNILATLGIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLI 342 Query: 361 D--YAHTSNSLEMIL---KNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409 D Y S+ + I GR I V G G+R + + +I Sbjct: 343 DESYNANPTSMRAAISVLSQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSY 399 >gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] Length = 478 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 134/384 (34%), Gaps = 33/384 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + K++ +S DSR + G +FVA+ + DGH ++ AI +GA ++SS Sbjct: 22 DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSSAIEKGAAGALISSDCG-------- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P + VDNT L + A+TG+ GK+SV + QI + G + + Sbjct: 73 --DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVKEMIAQIFRSKGKAHWN 130 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + P+ LA+ + ++ G R ++ Sbjct: 131 VKSFNNHFGV----------PLTLARMPRDTK---RAIFEIGMNTPGEIAPRSRMVRPQI 177 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T + H++ T +A + L AI+ +D + + R + Sbjct: 178 ALVTKIAGAHLEGMGTIEAVADE-KSDIFCGLEPNGVAILPREDDFFDYMKARVFDCQPT 236 Query: 267 VLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + G L N Q T + G+ F G+ NA++A + Sbjct: 237 ASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAVLAILVG 296 Query: 323 IAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 G+ + + L+ GR E + + D Y S+ L + Sbjct: 297 RLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGLAALGQ- 355 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMG 403 SGR I + G + + Sbjct: 356 RSGRKIAILGEMRELGPDADKLHA 379 >gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963] gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963] Length = 870 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 84/477 (17%), Positives = 167/477 (35%), Gaps = 38/477 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L ++ + S D+R I G +FVA+ G + DGH ++ AI +GA ++V Sbjct: 8 LAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLLV 67 Query: 74 S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 S+ + ++V++TR+ L +AS + + I+AV G GK+S+ Sbjct: 68 ETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMKE 127 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + R+ + S ++ L P + + + + + Sbjct: 128 AIASVLSRNYAT--------FRSWKNYNDLLGIPLSLGRLEPQHEYA-----VLELGCDH 174 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD- 250 G +K G TN+ + Y + + L L P+ + +D Sbjct: 175 PGELHKLCQMVKPHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDAR 234 Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 ++ +A + +G + +V + E L G Sbjct: 235 LVEIVAHYQQQRGSAVPDIRPLGIREINETQIRVGWEGLSFTLEQEGEMGTLTLASRLLG 294 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + L A + A G+ + V E LE+L + GR + + + + S Sbjct: 295 RQHISTMLAAYRIGRACGMSAEEVSEALEQLGPIEGRLNPLPGVYESRLLDDTHNASPGS 354 Query: 369 LEMILKNIRTITS--GRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSE 423 + L+ + +T+ G+ I + G + + +G+ A D I+ R E Sbjct: 355 VLAGLQALDELTNEGGKRIAILGEMLNLGYYQDDWYEQIGEQAASKVDYLIL-----RGE 409 Query: 424 DPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNKQ-----DVLVVAGKGHETV 472 I G+ +A + A L ++ +V+++ KG E Sbjct: 410 RTALIAESARQAGLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLL--KGSEAT 464 >gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Candidatus Regiella insecticola LSR1] Length = 521 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 151/455 (33%), Gaps = 59/455 (12%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ L ELI + +V DSR + G +FVA+ G + DGH F + Sbjct: 6 LRQLAQVLNAELIGIEHASDHAL----VTQVVIDSRKLSTGCLFVALKGARFDGHDFAEE 61 Query: 63 AIAQGAEAIVVSS--------------------------------------AYSLQDFSA 84 AI GA A++V+ A + + +A Sbjct: 62 AITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNATA 121 Query: 85 TIRSN---------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + P LVV +TR L AS L + ++AVTG+SGK+SV Sbjct: 122 SKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMTAA 181 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 I ++ + + S + + + P+ L + + + + A+ G Sbjct: 182 ILRQCKTPTKK---NSHVLYTSGNQNNDIGVPLTLLRLTAE---HDFVVIELGANHLGEI 235 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + + + NL H++ + A AK +F L P+ I + Sbjct: 236 AYSAGLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWPHW 295 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + R G + + + + L G V NA Sbjct: 296 QGMLSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANA 355 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L AA L +++G D + + L + H PGR + + Y S+ + Sbjct: 356 LAAAALAMSVGADLEAIAKGLAQSHATPGRLFPILLAEGKLLLDDSYNANVGSMIAAAQL 415 Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + + R++ V G G+ +G A Sbjct: 416 LAEMPGYRVMAVGDMGELGETAVDCHRQVGSAARQ 450 >gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 491 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 80/471 (16%), Positives = 159/471 (33%), Gaps = 20/471 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E++ + + I+ + DSR++ + +FVA G + DG+L+ AI Sbjct: 10 MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 69 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHP-ENILAVT 121 GA +V++ S + N +L D+ ++FL AS K+P ++ VT Sbjct: 70 GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 129 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + + + + T + ++ Sbjct: 130 GSCGKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVI-------VAEM 182 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + E S L + G+ +A A M + K Sbjct: 183 GMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKP 242 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGK 298 + +DD + A A V VG + + + + + +G Sbjct: 243 ELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGL 302 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 G+ V +A A +C +G+ L + V R E + I Sbjct: 303 MRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLPLII 362 Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413 Y S+ L+ ++ +GR I + G G+ + G I A D+ Sbjct: 363 DDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMV 422 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + E E + + + + + EA++ +L DV++V Sbjct: 423 VFVGSDHAQEMMEA-ASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILV 472 >gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 452 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 84/476 (17%), Positives = 152/476 (31%), Gaps = 54/476 (11%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +QD++ L+ KI+ +S++S I +FV I+G + D H+FIP Sbjct: 6 IQDILEATDGTLL-------CGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +G A + N P + V +T + A+ K I+ VTG Sbjct: 59 ALKEG-GACLTQEHTEASG-------NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 + GK++ + + + IG S + + LT+ I + Sbjct: 111 SVGKTTTREMIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGV----------- 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + I G TN+G HI+ ++ K+ + L Sbjct: 160 ---LEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDG 216 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + +D K + + + +K+ + Sbjct: 217 VLFLNGDNDMIRKHI---DYVKKPYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEP 273 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G+ V NAL A + + + + + L + I +D Sbjct: 274 ITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG-----QRQNIIHVNDYILID 328 Query: 362 YAHT--SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 A+ +S++ L + GR I V G +G+ IA Sbjct: 329 DAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLF 388 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T E E P + E I L K DV+++ KG Sbjct: 389 IT-----GELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLI--KG 437 >gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] Length = 446 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ G +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ +++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ + AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 453 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 160/476 (33%), Gaps = 54/476 (11%) Query: 1 MK-----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 MK L+ ++ + + +I ++ DSR ++ G +F+ +G D Sbjct: 1 MKYLVTDLEKILNAKKANITS----------NVEITGIAIDSRKVKQGDLFIPFLGENVD 50 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH FI A +GA A + + + + I+ V+++ + + A Sbjct: 51 GHNFIESAFEKGAAASLSLKDDFVSENN--------IIYVNDSYEAIQTLAKHYLESLNA 102 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +A+TG++GK++ + + G +N L P I A S Sbjct: 103 KTIAITGSNGKTTTKDIITSVLSTKYKVHKTQGN--------FNNELGVPITILAAPEDS 154 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + + A G ++ TN+G HI++ ++++ AK + Sbjct: 155 EIL-----VLEMGADDFGQLDFLSKLVEPDYTVITNIGESHIEFFKSREGIAKAKFEITN 209 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + ++K ++ + + + + + ++ + Sbjct: 210 GMKKDGYFVYN-----GDEVLIKTLVDSSEINATSCGENSYNDIILESYTITRDKIDFKL 264 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSR 354 D + L G+ +YN + A + IG+ + + + + + + R + + Sbjct: 265 NISDEQYFTKLKGKHNLYNIMFATAIASKIGLTNEEIHKAIENTVEITGMRLQSIPYKED 324 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA 410 I Y + S++ + + + + G + +G+ + Sbjct: 325 SLIINDAYNASPTSMKAGVDVVSSYDDFDYKTLVLGSMFELGPNEVNYHGEVGEYISENT 384 Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D+ I D E I +I + + E +K +V++ Sbjct: 385 NDIDLVISVGDL-----AENITKQIKNDKIKTLHFPTTAEVSEYLKNNKHKNEVIL 435 >gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 452 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 84/476 (17%), Positives = 151/476 (31%), Gaps = 54/476 (11%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +QD++ L+ KI+ +S++S I +FV I+G + D H+FIP Sbjct: 6 IQDILEATDGTLL-------CGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +G A + N P + V +T + A+ K I+ VTG Sbjct: 59 ALKEG-GACLTQEHTEASG-------NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 + GK++ + + + IG S + + LT+ I + Sbjct: 111 SVGKTTTREMIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGV----------- 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + I G TN+G HI+ ++ K+ + L Sbjct: 160 ---LEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDG 216 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + +D K + + +K+ + Sbjct: 217 VLFLNGDNDMIRKHI---DYVKKPYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEP 273 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G+ V NAL A + + + + + L + I +D Sbjct: 274 ITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG-----QRQNIIHVNDYILID 328 Query: 362 YAHT--SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 A+ +S++ L + GR I V G +G+ IA Sbjct: 329 DAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLF 388 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T E E P + E I L K DV+++ KG Sbjct: 389 IT-----GELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLI--KG 437 >gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae DSM 15829] Length = 482 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 80/471 (16%), Positives = 159/471 (33%), Gaps = 20/471 (4%) Query: 6 LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E++ + + I+ + DSR++ + +FVA G + DG+L+ AI Sbjct: 1 MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHP-ENILAVT 121 GA +V++ S + N +L D+ ++FL AS K+P ++ VT Sbjct: 61 GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 120 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ + + + + + T + ++ Sbjct: 121 GSCGKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVI-------VAEM 173 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + E S L + G+ +A A M + K Sbjct: 174 GMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKP 233 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGK 298 + +DD + A A V VG + + + + + +G Sbjct: 234 ELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGL 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 G+ V +A A +C +G+ L + V R E + I Sbjct: 294 MRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLPLII 353 Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413 Y S+ L+ ++ +GR I + G G+ + G I A D+ Sbjct: 354 DDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMV 413 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + E E + + + + + EA++ +L DV++V Sbjct: 414 VFVGSDHAQEMMEA-ASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILV 463 >gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] Length = 456 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 83/480 (17%), Positives = 166/480 (34%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E N LS ++ + +N++ DSR I G +F+ + G + DGH FI Sbjct: 1 MKLSLYEVAKVVEAQNSLS----EFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V + K + A K +++AV Sbjct: 56 DMAFENGAVATFSEKEI----------PGKPYLLVKDCLKAFQMLAQYYIEKMRLDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S ++ + + + G L P Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + + L G H+++ +++ A+ ++ Sbjct: 165 GDIHLLSEIAKPHIAVVTLIG------------EAHLEFFGSREKI--AEGKMQIIDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + K +T + D Sbjct: 211 SHGILIAPGDPIIDPYLPENQMLI-------RFGDNQEIYVKDIQERKNSLTFTTNVLDR 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G++ NA++AA + + ++ ++E LE + + R E+ + + Sbjct: 264 AITLPLSGKYNASNAMIAAYVGKLLAVEDDDIIEALENIQLTKNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL++ ++ G+ I V + + +I L+ D Sbjct: 324 VYNANPTAMRLILESFSSLTPENQGKKIAVLADMKELGPKSVELHQQIITALSPDKIDHL 383 Query: 414 IVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468 + ++ E ++ +++ E ++ +A+ E+L D L++ KG Sbjct: 384 VFYGNDI--ESLAQLASQMYPIGKVYFFKKTEDQDQFDAMANHVKEILEANDYLLL--KG 439 >gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2] Length = 471 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 61/412 (14%), Positives = 140/412 (33%), Gaps = 25/412 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + +Q+ + ++ +++ VS+D+R I +G +++A+ G +GH F A Sbjct: 1 MITTTLSWIASQIDG-KLDGQDCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAEN 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA AI+ S ++ + P++ V++T+ L L + + + +A+TG+SG Sbjct: 60 AGASAIIASEPVNV---------SIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I +R G G + P+ L + + + Sbjct: 111 KTTVKEMCAAILERRGSVLATNGNFN----------NDIGVPLTLLRLEHHHEYAVMELG 160 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + + + + + + + + Sbjct: 161 ANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGDSGTAIVNVD 220 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + ++ ++ + + + + + + Sbjct: 221 SQFADFWQGKLKQKRVLTFSPMQKNEADFTAEDI--IVGLDGCAAFQLCSNEGEAAIQLI 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG V N LVAA L + +G V + L + V GR S+ + Y Sbjct: 279 IPGIHNVGNVLVAAALTMQLGATLENVRDGLLAMKQVKGRLNVKTLGSQVRLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI 414 S+ + + T + ++++ G++ + +G A D Sbjct: 339 VASVNAAIDTLSTFSGINVLILGDMKELGEKARFYHEQVGNYALSKGIDYLY 390 >gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1346] Length = 474 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 167/475 (35%), Gaps = 41/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK L + + + + I V+ +S+ I+ G +F+ + + DGH FI Sbjct: 1 MK--ALAINEIVKAVGAVDYDSTAAHNL-ITSVAFNSKEIKPGGLFIPLKAAR-DGHDFI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA+A + ++ A S P++ V++T A G ++AV Sbjct: 57 QDAIDHGAQATLWAND------PADAPSEIPVIQVEDTFTAFVDLAKYYLGLIGPKVIAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + G +N+L P I LS Sbjct: 111 TGSAGKTTTKDMTAATLSTTFNVYKTQGN--------YNNQLGVPFTI-----LSMPEDT 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + S G + + T +G HI++ +++ AK+ + E L Sbjct: 158 EVLVVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKED 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + + V+ RV + + H +S + Sbjct: 218 GTFIYPGDEPLVDQAVVDMPEIKKIRVGLDDSEDVYAENIVNEREHTHFYTNLSPNVE-- 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ V NAL+A + + G+ + L + + R E++ + Sbjct: 276 -LSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMGKDDIQILND 334 Query: 361 DYAHTSNSLEMILKNI----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD----LADI 412 Y +++ +++N R + ++V G + + + IA + D Sbjct: 335 TYNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEIDSPHIDG 394 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + E RA G P ++ I+ ++ + QD ++V Sbjct: 395 VYL----YGKEMQALARALQEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILV 445 >gi|315931390|gb|EFV10359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 327] Length = 98 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458 MG I A IAI+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ Sbjct: 1 MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKEN 60 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 61 DDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 94 >gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halorhodospira halophila SL1] gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Halorhodospira halophila SL1] Length = 450 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 141/391 (36%), Gaps = 40/391 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ + ELI + V+ DSR +G +FVA+ G + DGH F Sbjct: 6 LEQIAALTGAELIGNGGGA--------VTGVALDSRRATSGSLFVALPGARCDGHDFADD 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A A+GA A++ + P LVV++ L++ + + ++AVTG Sbjct: 58 AAARGAVAVLGTRPVGA----------LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++V + + SG + G ++N L P + Sbjct: 108 SNGKTTVKELLAAMLAESGPTLATEGN--------RNNLLGVPE-----MLCRLGAGHRF 154 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A++ G + G TN G H++ + AK LF+ LP++ Sbjct: 155 AVIEMGANAPGEIAQLTAWAQPDVGVVTNAGPAHLEGFGSLDGVARAKGELFQG-LPRQG 213 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + A C + + G Sbjct: 214 VAVLNADDDFCGLWREMAGARRCLTFGADAGQFRHRGHGSRL-------ELDLGGGWMAA 266 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G N AA A+ + + +L+ + VPGR E + G + Y Sbjct: 267 PTPLLGGHNAQNIAAAAACAAALEVPARTILDRISSAAAVPGRLELRRGDHGGWLVDDTY 326 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 SL+ + + + ++ G G+ Sbjct: 327 NANPASLQAAIDTVTGFQAA-PWLLLGAMGE 356 >gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces flavogriseus ATCC 33331] Length = 472 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 156/473 (32%), Gaps = 41/473 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + + V DSR ++ G +F A G + DGH + + Sbjct: 1 MIALSLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAER 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++ + P +VVD+ L A + ++A+TG Sbjct: 61 AVEAGAVAVLAARPV-----------GVPAIVVDDVVAALGALARAAVERLGTTVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + QI +R + + G + T Sbjct: 110 SAGKTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAE-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G ++ G N+G HI +++A AK L E LP++ Sbjct: 157 LVLEMGARGIGHIEYLAGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVEV-LPEDG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R ++ + + D Sbjct: 216 AAVLNADDPLVRAMASRTKARVILFGEAPDADVRGENVRLTDDG-RPAFALHTPTGCSDV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + +G+ + + L R E + Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMSVTEIADALSGAGTLSRWRMEVTERPDGVTVVNDA 334 Query: 362 YAHTSNSLEMILKNI------RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411 Y S++ L+ + R GR V G GD + +G++A+ L Sbjct: 335 YNANPESMKAALRALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 395 KLVAVGGQEASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446 >gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 90/462 (19%), Positives = 157/462 (33%), Gaps = 36/462 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + + L P + + V++D+RH+ G +FVA+VG + DGH F+ QA A GA Sbjct: 5 NVQTIATWLGAPPPDV-DAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAV 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A VVS + + V +TR L + A ++AVTG SGK++V Sbjct: 64 AAVVSRRVASP---------LAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTV 114 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + I R + G + L+ S+ + + A Sbjct: 115 KEMLAAILSRVHPTLATRGNLNN-------------DIGAPQTLLALSSAHRRAVIELGA 161 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G TN+ H+ AK L A++ D Sbjct: 162 NHLGEIAWTTSLAIPDVAVITNVTGAHVGEFGGIGRIAQAKA-EILLGLSASGTAVLNRD 220 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308 D + + A +A + + C + T+ V+G L G Sbjct: 221 DRFYPMWRELAGDAEVLDFGLDPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLG 280 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + V NAL +A A+ + + ++ LE +PGR V + Y + Sbjct: 281 RYNVRNALASAAAAWALRVPAEDIVAGLEACRTMPGRMMNVPGIRGTRLLDDTYNANPGA 340 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + L + + + R + G G + +G++A +L + T Sbjct: 341 VRAALAVLAEMPAPRWCFLGALGELGAESERLHADLGRVARELKIDFLGTFG-------A 393 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R + + +R A + L ++V KG Sbjct: 394 DARPAVAAFGDRGCHFDDWAALVRYAHDHLPPGASVLV--KG 433 >gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor bescii DSM 6725] Length = 448 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 157/454 (34%), Gaps = 53/454 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ ++ + + + S +S+ I +F+ + G++ DGH F Sbjct: 1 MNL------WLSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENIL 118 + +A+ GA + + + P + V +T L A + ++ Sbjct: 55 VKEALQNGAISFISQKDFD--------DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G + Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPED------------ 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + +++K Q S E Sbjct: 214 ESGILIINNDNDILNLHKKEFKRKVVTIGIENESNFRAQNVQK-------HQNGFSFEVD 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 ++ + +YN+L A + + ID L+ E + + + RFE ++G Sbjct: 267 NYTYFIKSFNFHDIYNSLFAIAVGTILEIDRELIKEAIRQKERLKRRFEV---INKGSIT 323 Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADI 412 VD Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ Sbjct: 324 VVDDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDV 382 Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444 I T +D I E G+ + + Sbjct: 383 VICT-----GKDAFYIFDEAKKKDGVKAYFVSKD 411 >gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 453 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 149/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F+ QA+A GA A++V + Sbjct: 19 GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 458 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 158/451 (35%), Gaps = 41/451 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 V +DSR ++ G +FVA+ G + D H FI +A+GA A++VS Sbjct: 19 VPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSREVDAA------- 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +V +TR L + + +AVTG++GK++V + I + ++ Sbjct: 72 --VPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 129 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203 +++ P+ + + + G+ H G+ Q + Sbjct: 130 ATGGNLNNDI-------GLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTV---- 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHN 262 TN R+H ++ + +A + L A+ + + RA Sbjct: 179 ---AVITNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAA 235 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RVLS G + V + Q + + G F+ L GE V NAL A Sbjct: 236 GTRRVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACA 295 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G+ + L + V GR + T + I Y +S+ + + + Sbjct: 296 LAAGVHVPAIQAGLAEFKPVKGRLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFAAP 355 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 R++V+ G GD+ +G A ++ T E F Sbjct: 356 RVLVLGDMGEVGDQGPAFHDEIGAYAQARGIEVLWAT-----GELAVHAVQAFGANGRHF 410 Query: 440 IEKGNRIEAIRT--AIEMLNKQDVLVVAGKG 468 + +A+ + ++V KG Sbjct: 411 GSAEDLAKALEEDSGGMVAQAG-AVLV--KG 438 >gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + L+ + P+ I+ +S DSR +Q G F AI G DGH F AI Sbjct: 3 LLWTSDALVAAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +VV+ + R PI+VV++ L + I+AVTG++GK Sbjct: 63 GAGVLVVAEG----KLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ + G + P+ LA+ + Sbjct: 119 TTTKEALRHVLSAVGKVHASAQSFNNHWGV----------PLTLARMPD-----NCDYAV 163 Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 E + D+ R + ++ T + H+ + + AK +FE L P+ A Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEG--A 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301 + D +++ + +A G+ L K + + + G D Sbjct: 222 AVLNRDDGRFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMI 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV 360 PG V N L G +G D V L L GR + G + Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLI 341 Query: 361 DYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIALDLADI 412 D ++ +N M + GR I V G GD K+ LAD+ Sbjct: 342 DESYNANPASMAAAMALLNATPVTGEGRRIAVLGDMLELGDHS-------AKLHAALADL 394 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDVLVV 464 + T + + +PG I+ R + + L DV+++ Sbjct: 395 IVGTGTQTVFLGGPE-MRALAEALPGDIKMEYRA-GVEQLKPVLLAALKPGDVVMI 448 >gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 446 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ G +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ +++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ + AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVSVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. 1501(2011)] Length = 507 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 149/399 (37%), Gaps = 34/399 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +D+R IQAG F+AIVG DGH F+ AI +GA A++VS Sbjct: 47 TRIITDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVSQPIEALA--------V 98 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L VD+TR A+ +H + ++A+TG+SGK++V ++ I + ++ Sbjct: 99 PQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQS 158 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T+ ++ +N P L + + A+ G + +K Sbjct: 159 TTLVTRGNLNNDFGVP-----MMLLELEQQHRYAVLELGANHVGEIAYTTAMVKPDVACI 213 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H+ + K + L + S A++ DD Y++++ A V+ Sbjct: 214 LNIGTAHLGEFGGRDNIAKTKA-EIYQSLTESSTAVVPFDDDYTQQLTAVAKQHTPHVIH 272 Query: 270 VGYQGKFIHLKKVC----------------AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G+Q + K K + + D P+ GE V Sbjct: 273 YGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFDLDSQTSVVDITLPMSGEHNVS 332 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA A GI ++ L + GR I Y NS+ Sbjct: 333 NALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTLGMH-HIIDDTYNANPNSMRAAA 391 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA 410 + +++V+ G GD + +G+ + A Sbjct: 392 DVLAAQAGYKVLVLGDIGELGDASSEEHYKLGQAIANKA 430 >gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] Length = 470 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 145/402 (36%), Gaps = 27/402 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + VS+DSR G +F+AI G++ D H F+PQ + A++V+ Sbjct: 24 VRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLVAR--------TPEN 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N P + V +TR L A + ++AVTG++GK++V + I + + ++ Sbjct: 76 WNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ P+ L + + + V + + G + + Sbjct: 136 ATAGNFNNDI-------GLPLTLFRLHAAHR---LAVVELGMNHPGETELLAKLAEPTVA 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N R+H ++ T +A L + A+ ADDAY+ A Sbjct: 186 VVNNAQREHQEFMATVEAVALEHA-SVIHALSPQGTAVFPADDAYASIWRVAATGNRIID 244 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + V + ++++I D + G +NAL A +A G+ Sbjct: 245 FALNSAERTTEA-AVKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNALAATSAALAAGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 + LE V GR + G + D Y +S+ + + + S R Sbjct: 304 SLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAIDVLASRASPR 363 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 ++V+ G GD +G A D D R Sbjct: 364 VLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRD 405 >gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 442 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 82/439 (18%), Positives = 142/439 (32%), Gaps = 42/439 (9%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S D+R AG ++ A+ G DGH FI A+ + A A+VV AY + L Sbjct: 27 SVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPGE----------L 76 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 VV +T + L + ++ VTG++GK++ + + +G + Sbjct: 77 VVPDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLASEMPVGKTVGNFNNH 136 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + L + + S E G G+ TN+G Sbjct: 137 VGVPLSL-------LRLPDGCRAGVIEMGMNHSGEIRELGAIARPEIGV------VTNVG 183 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 H+++ + + AK L E L + A++ ADD + Sbjct: 184 YAHVEFFDSIEGIALAKRELIEG-LTPDGVAVLNADDPRVAGFSAVHPGRSITFGLSEHA 242 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 A + + +F L G V N L A + GI A + Sbjct: 243 EIRAEDVAAHAGGTRFRAL------GMEFETGLSGRHAVMNLLAAIAVATVFGIAPARMR 296 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-- 391 + + R E N Y + + ++ +R + R I V G Sbjct: 297 DAVASFAAGKMRGERTEHNGIVIWNDC-YNSNPEAAQSMIDVLRETPARRRIAVLGEMLE 355 Query: 392 -GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 G +G+ A + D+ I R + + G+ + EA Sbjct: 356 LGHAADELHRQVGRYAAEHGVDLLI----GVRGAARAMVESAARAGLD-ARFFEDPAEAG 410 Query: 450 RTAIEMLNKQDVLVVAGKG 468 A E+ + D ++ KG Sbjct: 411 DRARELAHAGDAVLF--KG 427 >gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] Length = 453 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 149/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F+ QA+A GA A++V + Sbjct: 19 GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] Length = 467 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 71/405 (17%), Positives = 141/405 (34%), Gaps = 25/405 (6%) Query: 11 FPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +++ ++R+I V D+R + G +FV +VG DGH +I QA+ GA Sbjct: 6 LMDVVKYTKAIDYTAKDRQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + S+ D + + ++ VD+T + L A+ ++ VTG++GK++ Sbjct: 66 VATLWSA-----DPAQAPSDDLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + Q G P L + V + + Sbjct: 121 TKDMTAMVLQAKYRVHKTQGN----------YNNEIGLPYTLLQM---PEDTQVAVIEMG 167 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + + + + T +G H+++ ++ AK+ + L P Sbjct: 168 MSDFGEIKQLSEIAQPDIAAITLIGESHLEFLGSRAGIAQAKLEILYGLKPNGVLLYPAN 227 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + E+ + R V + T + P+ G Sbjct: 228 EPLIESEMPEIDQPIYLRSFGFTDHADAFAYDMVEEVDRTYFKTNLEP--NVTCTIPVLG 285 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + V NAL+A + + + + L + R E++ T+ + Y + S Sbjct: 286 AYNVSNALIALSVAELLDVPLEQAIFQLANFQLTANRLEWLTTHQGARLLNDAYNASPTS 345 Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + +LK++ + R I V G + + + +A LA Sbjct: 346 VLAVLKSLAALNLAPGQRRIAVLGDVRELGEASAQLHRSLAQGLA 390 >gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] Length = 453 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R I+ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 19 GADRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEHE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G Sbjct: 71 -LDADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHIGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + + A + L + + AI+ D + + Sbjct: 177 DVALVNNVAAAHLEGFGSIEGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKTVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + D + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + L L V GR + I Y + +++ + + + ++ R Sbjct: 296 EMGASLAEIAHGLAHLSKVKGRVDLTHLRDDITLIDDSYNASVPAMKAAVDLLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A + ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT 390 >gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 76/496 (15%), Positives = 157/496 (31%), Gaps = 55/496 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+++ L+ + DSR I G +F+AI G + DGH ++ Sbjct: 4 MSLEEIAQAVQGRLVAGTAAANTPVATSAFT----DSRQIVEGSVFIAIAGERVDGHDYV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 P AQGA A +V + ++ P +VV++T L L A + P Sbjct: 60 PHVGAQGAVAAIVDHEIA--------DADVPQIVVEDTVLALGLLAKHNIERRRALGTPF 111 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ ++ + G + +G + P+ K + Sbjct: 112 TVVGITGSVGKTTTKDLMKALLSHMGSTVAPVGSFN----------NEIGLPLTSLKVNA 161 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G + + +G H+ + + AK + Sbjct: 162 ETR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIH 218 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L+P + D+ + + L G G + + ++ Sbjct: 219 GLVPGGLSVLNANDEHVAAMSAFAPGDVMWFGLPNGDGGNPAITAQHVRCDELDHPSFTL 278 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---EF 348 + D + G +N + A + + + P R Sbjct: 279 KNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTV 338 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRP 400 + I + +S++ L + +G I V G G ++ Sbjct: 339 NKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHV 398 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIE 454 +G+ AL+ A++T + + + + G + EA R Sbjct: 399 GIGRYALEGGVDALLTVGSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTR 458 Query: 455 ML--NKQDVLVVAGKG 468 + + V+++ KG Sbjct: 459 LAVEHPGAVVLL--KG 472 >gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 453 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 149/457 (32%), Gaps = 38/457 (8%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ L++ I+ V +DSR ++ G +FV G + DGH F A GA I Sbjct: 7 NELLAGLTLAEP----VSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYI 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + + T +VV ++ + AS I+ VTG+ GK++ Sbjct: 63 IANHPVDGVPADRT-------VVVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKE 115 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 F + G + G Q+N + P S+ V + Sbjct: 116 FCYAVLSAFGNTLKTEGN--------QNNEIGVP-----NTLFRLESATEYAVVEMGMDH 162 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + ++ AG T +G H++ T++ AKM + L + D Sbjct: 163 AGEIERLTRCVRPSAGIITMIGVSHLENLGTRENILKAKMEICAGLPDGAPLVL--NADN 220 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + + E F P G Sbjct: 221 DLLPTAQVPGRLRAVWFGIEQEADVRAENIQTGAQGTTFTLVDREYGRFPVSIPTAGLHT 280 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VY+AL A +G+D A + L + R V Y + +S++ Sbjct: 281 VYDALSAYAAATRLGLDPANCAKALSRYQTTGMRQHIVERGGVTVIEDC-YNASPDSMKA 339 Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEK 427 + ++ + + R I + G GD + G+ +A D I PRS Sbjct: 340 AISVLKALPNKRKIALLGDMLELGDASEEGHRHTGEWVAEAGVDTLI--AYGPRS----A 393 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLV 463 + AE + + + ++ + D L+ Sbjct: 394 VMAEAAQARGVTTVHCQKAQEVLQCLQQFVQPGDALL 430 >gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] Length = 457 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 184/466 (39%), Gaps = 36/466 (7%) Query: 5 DLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ F E++ + + K N +S+D+R I IFVA+ G+ + + +I A Sbjct: 2 ELLK--FEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +G+ +V ++ + + NT I++V+NTRK L A K ++ +TG+ Sbjct: 60 SVKGSNLCIVD---EIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S G + + L + L + Sbjct: 117 TGKTSTKDLTAAALSSKYKVFKTQGNFNNE--------------VGLPLMIFSLDNSYDV 162 Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V S+ + HRL + K TN+G HI+ +T++ AKM + + Sbjct: 163 AVLEMGMSNFDEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSV 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFD 301 + +D ++K + +++S+G++ + + + N + T+ + + Sbjct: 223 LIVNKEND-----LLKTVKSNDYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKER 277 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F P+PG+ + N+++A +GI+ + + ++ L V R + V + + Sbjct: 278 FNIPVPGKHNILNSMLAIVAGRTLGIEYDKLKQGIKNLSVTSMRLDIVKKDGF-TIVDDS 336 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + +S+ + I TI R I + G G + + A + ++T Sbjct: 337 YNASPDSMRAAIDVINTIKGNRKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVG 396 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E +I F+ +A LNK+D+++V Sbjct: 397 EFNEAYKEGYNNDI-----NFMAFDTIEDASDFITNNLNKEDIILV 437 >gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] Length = 454 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 90/457 (19%), Positives = 155/457 (33%), Gaps = 41/457 (8%) Query: 11 FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E+++ S+ K++ + +D+R +Q G +FVA+ G K DGH F+ AI +GA Sbjct: 10 LVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAI 69 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A +V AY F P+L V +T K + ++ VTG+ GK++ Sbjct: 70 AAIVDYAYENPVF--------PVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + G G + P L + + + + Sbjct: 122 KELIAAVLATKGQVHKTYGNFN----------NEIGVPKTLLELGAE---HDFAVIEMAM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + G TN+G HI+ +++A A +P +S AI+ D Sbjct: 169 RGRGQIAELTQIARPTIGVITNVGTAHIELLSSEEAIAEA-KCELLAEMPNDSVAILNYD 227 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 E K+ L + PLPG Sbjct: 228 SPLLMETAKKFWQGKVISYGFSGGDIQGKLIDNETVEVAG----------IGLPLPLPGR 277 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 N L A + + ID L+ +++ GR + + + Y ++ Sbjct: 278 HNATNFLAALAVAKVLEIDW-QSLQAGVIVNMPNGRSQRFTLPNDVIILDETYNAAPEAM 336 Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L+ + I R I V G G+R Q +G++ L ++ + S+D E Sbjct: 337 LAALQLLADIPGKRKIAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVD--SKDAE 394 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I GIP + I + D L+ Sbjct: 395 FIANS-AKGIP-CECFATHADLIARLKTFMQAGDRLL 429 >gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Kitasatospora setae KM-6054] Length = 467 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 93/473 (19%), Positives = 163/473 (34%), Gaps = 42/473 (8%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E + + I V +D+R I+ G +FV + G + DGH + +A Sbjct: 1 MIALTLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTG 122 +A GA A++ + P ++VD+ L A + + + + +TG Sbjct: 61 VADGAVAVLATRPV-----------GVPAILVDDVVVALGRLARAVVARAADVRIVGLTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK+S + Q+ G + F G + PS Sbjct: 110 SSGKTSTKDLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPS-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G ++ G N+G H+ +++ A E L E Sbjct: 157 LVMEMGARHKGDIEYLTGITPPTVGLVLNIGTAHLGEFGSREGIAEA-KGEMVEALSPEG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R ++ A + Q T+S Sbjct: 216 VAVLNADDPLVRAMSSRTRARVVLFGESPDAHVRATDVRLDATG-RPQFTLSTPAGSAPV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + + +G+ V E L + R E V + Sbjct: 275 RLRLYGEHHVSNALAAAAVAVELGMPVDRVAEALSEAGALSRWRMEVVDRADGLTVVNDA 334 Query: 362 YAHTSNSLEMILKNIRTI-----TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 Y S+ L+ + T+ R V G G+ + +G++A+ L DI Sbjct: 335 YNANPESMRAALRALATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRL-DIT 393 Query: 414 IVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + R ++ R E G + + AI + DV++V Sbjct: 394 KLVAVGGREAARMELGARNEGSWGEESVL-VSDADAAIELLRSQVRPGDVVLV 445 >gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter arilaitensis Re117] Length = 485 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 158/483 (32%), Gaps = 51/483 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ I + I V++DSR + G ++VA G DGH FI Sbjct: 6 LTDLLE------ITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENIL 118 A A GA + ++ P ++V++ + A+ + + ++ Sbjct: 60 ARAAGAVLSLAERITHDEERREH-----PAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVV 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG++GK++ + I ++ + IG + LT S Sbjct: 115 GITGSAGKTTTKDLLAGILSQAAPTVSPIGS----YNGEVGVPLTVFSATE--------- 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + + A+ G + D + G +G H + AK L E L Sbjct: 162 ETKYFVIEMGATGIGHLNYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEA-L 220 Query: 239 PKESPAIIYADDAYSKEV----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E AI+ A+D + + G + G + V A + Sbjct: 221 DTEGIAILNAEDPRVARMESRARSQVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLEF 280 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-KLHVVPGRFEFVGTNS 353 G L G V N L AA +A+ ID L+ LE + R E + Sbjct: 281 PNGYSKRITSGLLGRHHVSNILAAANAALALDIDPELIAAGLEGRAAGSRWRMERLERAD 340 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-------RIIVVFGCG---GDRDQGKRPIMG 403 I Y S+ L + + G R V G GD + ++G Sbjct: 341 GVSIINDAYNANPESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLG 400 Query: 404 KIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQD 460 ++A+ + +V R P + ++ G + EA E L D Sbjct: 401 RMAVRMNIKKLVVVG---RGAKPAY-NSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGD 456 Query: 461 VLV 463 + + Sbjct: 457 IAL 459 >gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] Length = 489 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 82/498 (16%), Positives = 161/498 (32%), Gaps = 58/498 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I+ + DSR I G +FVAI G + DGH F+ Sbjct: 4 MSLTEIAQAVDGRLMPTTVPTDEP---VAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 P+ AQGA A +V + + P +VV+NT K L A + P Sbjct: 60 PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ ++ + + G + +G +N + P +L Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGS--------FNNEIGLP-----LTSLK 158 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V + A+ G + + +G H+ + + A Sbjct: 159 VNAGTRFLVVEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQA-KSEIV 217 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTIS 294 L I+ A+D + + A + + + + + Sbjct: 218 RGLVPGGLTILNANDEHVAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFV 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---E 347 +E K G +N + A A+ + + P R Sbjct: 278 LEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVST 337 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKR 399 + I + +S++ L + +G I V G G + Sbjct: 338 VTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLH 397 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-------KGNRIEAIRTA 452 +G+ A++ A+VT + E + + + G + +A R Sbjct: 398 EDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMV 457 Query: 453 IEML--NKQDVLVVAGKG 468 + ++ V+++ KG Sbjct: 458 TRLATDHEGTVVLL--KG 473 >gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dyadobacter fermentans DSM 18053] Length = 434 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 144/416 (34%), Gaps = 40/416 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G IF A+ G+K DG+ + +A+ +GA VV T+ + Sbjct: 18 VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDP--------TVANGDRF 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+ ++ L A ++A+TG++GK++ + ++ + G + Sbjct: 70 LLFEDGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLN- 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + + P A+ + + +++ +S G TN+ Sbjct: 129 -NHIGVPLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQ----------PTHGLITNI 177 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ K LF+ L K+ + + +++ + G V Sbjct: 178 GKAHLEGFGGVSGIIKGKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFYCSE 237 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + ++ + LPG + N A + G++ A Sbjct: 238 NSP------INPTLIEENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADA 291 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391 E + R + V I Y +S+ + N + + R I++ G Sbjct: 292 YEAVATYEPDNNRSQIVKKG-TNTVIMDAYNANPSSMAAAVANFGRMEAARKILILGDMF 350 Query: 392 --GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 GD + +GK IA + D+ I+ K+ + +P + Sbjct: 351 ELGDAAPEEHLALGKQIAGEKFDVVIL---------AGKLMQHALPALPKAYYFPD 397 >gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 462 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 64/388 (16%), Positives = 129/388 (33%), Gaps = 25/388 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + +I L ++ + + I V DSR + G +++ I G +GH ++ QA Sbjct: 4 MIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQA 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA A++ A +++VD+T L A + ++ VTG+ Sbjct: 64 IDNGARAVLWER------REANPPKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGS 117 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S + + + ++ +G P+ L S + Sbjct: 118 NGKTSTKDILASVLAKHFITQKTLGN----------YNNEIGVPLTLL---SLSENCEAA 164 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + + ++ +N+G H++ T + AKM + E L Sbjct: 165 VVEMGMENLQELSFLTQIVRPDIAIISNVGTAHLENLGTMENIARAKMEITEGLGEHGLL 224 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +++ ++ + G + + + KD + Sbjct: 225 IYNGDQQLLRNAAIEKQIPGCIKIRTFGKDEQNDVVVHQVRQLPDG---LCFSIKDQVYH 281 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G+ Q NA A A+G+D + + + R E V N + Y Sbjct: 282 LDMIGKHQAMNATAAWIAARALGLDEEEIAQGFASVEKTGLRNELVRVNQC-LILNDSYK 340 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG 391 S + + + V G Sbjct: 341 SNPQSALAAVDTMEEFDIPYKLAVLGDM 368 >gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 489 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 160/498 (32%), Gaps = 58/498 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I+ + DSR I G +FVAI G + DGH F+ Sbjct: 4 MSLTEIAQAVDGRLMPTTVPTDEP---VAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 P+ AQGA A +V + + P +VV+NT K L A + P Sbjct: 60 PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ ++ + + G + +G +N + P +L Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGS--------FNNEIGLP-----LTSLK 158 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + A+ G + + +G H+ + + A Sbjct: 159 VNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQA-KSEIV 217 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTIS 294 L I+ A+D + + A + + + + + Sbjct: 218 RGLVPGGLTILNANDEHVAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFV 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---E 347 +E K G +N + A A+ + + P R Sbjct: 278 LEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVST 337 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKR 399 + I + +S++ L + +G I V G G + Sbjct: 338 VTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLH 397 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-------KGNRIEAIRTA 452 +G+ A++ A+VT + E + + + G + +A R Sbjct: 398 EDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMV 457 Query: 453 IEML--NKQDVLVVAGKG 468 + ++ V+++ KG Sbjct: 458 TRLATDHEGTVVLL--KG 473 >gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 459 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 128/367 (34%), Gaps = 27/367 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87 + VS DSR + +F+ + G DGH F+ +A+ +GA A ++ ++ + + R Sbjct: 26 FDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWCTR 85 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V +T + L AS K P + +TG+SGK++V + + Sbjct: 86 FGAACIAVHDTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEMARAVFSERYRVVAT 145 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G ++ + P + + V + + G + + Sbjct: 146 PGNLNS--------EIGLPQSL-----FFVRAEHEVGIFELGMNRRGEMRTLAQILVPHY 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G H+ TQQA K +F + + + D + + Sbjct: 193 AIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHS---VGFVPDDAYRVFLSNIPYGRVV 249 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V G +G + ++ + PLPG NAL L +G Sbjct: 250 VYDQGGRGLATEVIDEGLRGSRVL------YQGRWIRVPLPGVHNAKNALAVIALAAQVG 303 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + + +E++ GR V + Y +S+ L I++ + Sbjct: 304 LPAEEIQRGMERVKPPFGRSHVVCASLTFLLDC--YNANPDSMAAALHLCAHISAVSKVY 361 Query: 387 VFGCGGD 393 V G G+ Sbjct: 362 VLGDMGE 368 >gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris StLB046] Length = 456 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 143/402 (35%), Gaps = 31/402 (7%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ++ L+I + E + VS D+R I G +F+ G +GH F+ QA +G Sbjct: 2 KKSLQQIAEWLTIENQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + ++ P++ V++ L A +H + +TG++GK+ Sbjct: 62 AAASLW------MIDEPNPPAHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + IG + PI + + V+ + + Sbjct: 116 SSKDILAGALSPYFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVSVLEM 162 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G + + + TN+G H+ +++ AK + L +E Sbjct: 163 GMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAKF-EIVKGLSEEGILFYD 221 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ + ++ + + + + G+ + + DF + Sbjct: 222 GDEPLLQNLVAKTPH--LKTQAFGFSQELNLAASQIKATAQGSSFHVEGLIQGDFFISVL 279 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE QV N L A + ++G+ + E L+K+ + R + V G ++++ A+ + Sbjct: 280 GEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQLVP---VGDLLFINDAYNAA 336 Query: 368 SL---EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403 I +T +V G G+ ++ + Sbjct: 337 PTSMHAAIQFVEQTTIRNEKWLVLGDMLELGNEEKKMHEGIA 378 >gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella disiens FB035-09AN] Length = 433 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 61/438 (13%), Positives = 143/438 (32%), Gaps = 35/438 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR G IF+A+ G +G+ F A+ +G ++ ++ N + Sbjct: 16 ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEG------NDRL 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V + A + ++ +TGT+GK++ + + G + Sbjct: 70 ILVKDALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + L + + + AS G + ++ ++ G TN+ Sbjct: 130 DVGVPK-------------TLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H++ + + K L++ L + + + E+ + + Sbjct: 177 GRAHLEGFGSFEGVKLTKGELYDYLKANDCLLFLNESNPDLSEMAAQRNFERIISYGQND 236 Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + + E K+ G + + N L A L + + Sbjct: 237 MVNVQGEIIDCAPFLHFRWREVGSEWKEVMTHL--VGAYNLDNMLAAIALGLHFSVAPQQ 294 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + LE R + + Y +S+ ++N R + + + G Sbjct: 295 ICHALETYVPSNNRSQLT-ETVHNKLVVDAYNANPSSMVAAIENFRLMNVENKMAILGDM 353 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 + + K+ L A +T+ E+ K + F + + E ++ Sbjct: 354 RELGEVTDVEHQKVVEQL-KAAGLTNVWLVGENFGKTNTD-------FKKFHDVEE-VKA 404 Query: 452 AIEMLNK-QDVLVVAGKG 468 I +++ KG Sbjct: 405 EIAKAQPQGHYILI--KG 420 >gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum Nigg] Length = 450 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 89/467 (19%), Positives = 171/467 (36%), Gaps = 40/467 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ K++ L+ + I +K+ V+ DSR + G +F A+ GN+ GHLF+ QA Sbjct: 4 ILLKEWSSLLLDIDIPCSG---KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQ 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A VV+S Y D+ +L V + R+ L ++ +TG+ G Sbjct: 61 SGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ SF QQ+ S + +++LT P I A + Sbjct: 115 KTTTKSFTQQLLSPFYKV--------FASPKSYNSQLTLPLSILTADGDEDFL-----VL 161 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S + LD I+ G T++ H + A A+ + L + + Sbjct: 162 EMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLL--LERCGIHL 219 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D ++ MK+ A S+ + + + + + + V IS D + Sbjct: 220 LPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISAPDGDIELPVV 275 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 P N ++A L + + + + L + RFE N I Y + Sbjct: 276 FPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQEHNGI-RIINDAYNAS 334 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +++ L + G+ + + G G + + A+ A + Sbjct: 335 PDAMLAALDAVPIPSEGGKTVFILGHMAELGRYSDECHIAVARKAVTKAHVVFFV----- 389 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +R + G+ E + ++ + DV+++ KG Sbjct: 390 GEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLL--KG 434 >gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] Length = 457 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 169/474 (35%), Gaps = 39/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y ++ ++L + + G+ I V G + + ++A LA AI ++ Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAI--EEV 389 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468 A+ + + E I ++L +D++V+ KG Sbjct: 390 FLYGSEMAYLADKLQETYAPTNIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 68/398 (17%), Positives = 141/398 (35%), Gaps = 25/398 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + Q + + +++D+R + G +F+A+ G DGH FI +A +GA ++ Sbjct: 7 DWLANVLTTDYQGDNQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQKGAIGVI 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P +V +TR L + + + +A+TG+ GK++V Sbjct: 67 VQHKVDV---------DIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I G G + P+ L + + A+ Sbjct: 118 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + K N+ H++ + A + L + AI+ D + Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA-KGEIFDGLKDDGVAIVNCDSEF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 S+ + + + S + + + T+ + K LPG+ + Sbjct: 224 SQYWLDKLEGRNVKCFSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTLALPGKHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+AA L + + L + V GR + + + Y S++ Sbjct: 284 SNALIAAALTSEFDVTLEEIANALATMGDVKGRVNLIEVSDLLTVVDDTYNANVKSVKAA 343 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + + + RI+ + G G+ + +G+ AL+ Sbjct: 344 IDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALE 381 >gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii] gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii] Length = 513 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 99/258 (38%), Gaps = 42/258 (16%) Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + + + + ++ + G + L G V N L A +A+ + + Sbjct: 211 AESIKSNIWETELIVRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPL-ASIVAGIE 269 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 +PGR E + + + VD A T +L +L +R + +I VFGC G+ D Sbjct: 270 AVEIPGRSEVI-DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNEDASI 328 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------------- 437 RP MG +A +D I+T++NPR EDP K+ A+I+ G P Sbjct: 329 RPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAYAYFPFQDQGRT 388 Query: 438 ---------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE--- 479 +R AIR AI +DV+++AGKG E + + Sbjct: 389 PLWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV 448 Query: 480 -KKMSVDCDIIREILGLI 496 D R L + Sbjct: 449 LTGWLDDRVEARNALSKL 466 >gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter cryohalolentis K5] gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 482 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 138/381 (36%), Gaps = 27/381 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++D+R I+ G IF+A+ G+ DGH ++ AIAQGA A +V+ + D ++ Sbjct: 49 TRIATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIVARPIATAD-----ANSI 103 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR L A+ +H ++A+TG+SGK++ + I R + G Sbjct: 104 PQLVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 163 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + L+ + + A+ G + + ++ Sbjct: 164 LNNDLGVPMML-------LELSDHHR------YAILELGANHIGEIAYTTEIVQPDVACI 210 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H+ +++ K L AI+ D ++ ++ + A V+ Sbjct: 211 LNIGTAHLGEFGSREGICQTKA-EIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG 269 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G V ++ + + LP + A A ++ Sbjct: 270 FGSTDVSASHLDVE----PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNI 325 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV- 387 + + + P + R+ D Y +S+ K + T +++V+ Sbjct: 326 EVSDIVVGLENARPAKGRLNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQTGTQVMVLG 385 Query: 388 -FGCGGDRDQGKRPIMGKIAL 407 G+ + +G+ Sbjct: 386 DIAELGEAAVSEHQSLGRTIA 406 >gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa DSM 4126] gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa DSM 4126] Length = 436 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 142/383 (37%), Gaps = 34/383 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + +DSR ++ G +F A+ G +G+ F +A+ +GA A+V+ QD T Sbjct: 15 SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT----- 69 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V++ + L L A+ K IL +TG++GK++ + + G Sbjct: 70 --ILVEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P + LS + + + A+ G + G T Sbjct: 128 --------NNHIGVPLSL-----LSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ HI + K LF+ L + I DA K + KR Sbjct: 175 NIGKAHIGEFGGFENIIIGKSELFDFLKKNDGVPFINTQDAVLKNMEKR---------FS 225 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDS 329 + K + + F + Y N A + + Sbjct: 226 NAITFPNEGDDLQLKPEKGTAFLRYSTEGFSHIDTHLVGQFNYLNVAAALCIGKYFEVTM 285 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 +E ++ R + + T++ + Y +S+E+ +K++ I + +V+ G Sbjct: 286 EKAIEATQEYMPENMRSQMIKTDNY-TILLDAYNANPDSMELAMKSLSAIENTESVVILG 344 Query: 390 CG---GDRDQGKRPIMGKIALDL 409 GD + + +G++A+DL Sbjct: 345 DMLELGDTAELEHEKLGELAVDL 367 >gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 454 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 83/428 (19%), Positives = 162/428 (37%), Gaps = 35/428 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I +++ + + I+ VS+D+R I G +FVA+VG + D H F QA GA A++V Sbjct: 9 IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + N P +VV +T+ L AS ++ +A+TG+ GK++V V Sbjct: 69 KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + P+ L + + A+ G Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252 + +K + N+ H++ + + AK +++ L + DA Sbjct: 167 IAYTTQLVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDAL 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V+ + ++ + IS + ++ + + G+ V Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A+ + + +G + L L+ V GR + +S I Y + +++ Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428 + + R +++ G+ +G+ A ++T D KI Sbjct: 347 VDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399 Query: 429 RAEIIHGI 436 +E+ HGI Sbjct: 400 ISELCHGI 407 >gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] Length = 465 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 91/461 (19%), Positives = 166/461 (36%), Gaps = 50/461 (10%) Query: 25 WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + V +DSR QAG ++VA G DGH F+ A +GA A++V Sbjct: 18 GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEA--- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139 P +VV+++ + L A K +++A+TG+ GK++ + QI Sbjct: 75 ------VPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + +N + P + LA + + + AS G + Sbjct: 129 DGPTV--------APKLSFNNEVGLPLTVLLA-----DETTRHLVLEMGASGPGHITYLT 175 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + +G H+ + AK L + P I+ DD + + Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKG-TRPGGPVILNTDDPNVEAMAPL 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A R + G + + + V ++ T+ + + G V NAL A Sbjct: 235 ATGRVIRFSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374 A + +G+ V L + P R + G I Y +S+ + Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354 Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +I + I V G + + + + ++ +AD + T + A+ Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDT--------LIGLGADAH 406 Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468 + + G E NR +A R A+E V++V KG Sbjct: 407 YYLEGAPEVPNREVAADPQDAARLALEHAEDGAVVLV--KG 445 >gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] Length = 483 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 97/480 (20%), Positives = 156/480 (32%), Gaps = 49/480 (10%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I Q P W +I V +DSR + G +FVA+ G + DGH F+ + +GA A +VS Sbjct: 2 IRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVS 61 Query: 75 SA---------------------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 Q + ++ VD+ L A Sbjct: 62 PEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMF 121 Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++ +TG+ GK+S V +C R + S + ++ +T P+ + Sbjct: 122 TPTVIGITGSVGKTSTKEVVAAVCSRRLRT--------LKSQRSFNSEVTLPATL----- 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + +E + R + G TN+G H++ + +A NAK Sbjct: 169 --LGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA 226 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L E L + D + M A L V ++ Sbjct: 227 ELPESLPADGWCIL--NADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIEL 284 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T+ EG+ PL G Y AL A + +G+D + E L + R V Sbjct: 285 TVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE-PGEQLRLRIVPG 343 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 I Y S L+ + T GR I V G G +G A Sbjct: 344 QHGTTIIDDTYNAAPLSTIAALQVLAE-TKGRRIAVLGEMLELGAASVEGHQQVGAAAAT 402 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +AD+ + + A + + N AI + D L++ KG Sbjct: 403 MADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLNRYIQPGDHLLI--KG 458 >gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402] Length = 303 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 24/246 (9%) Query: 9 KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56 K E I + + ++ IN V DSR + + G F A+ G DG Sbjct: 26 KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 85 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 FI AI GA I + + V++ RK +S ++ LY + Sbjct: 86 KKFINSAIENGAVCIFYEGDLNNHSC-----DEICFVQVNDVRKTMSKVSALLYDEPSRT 140 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLA 171 ++ VTGT GKSS SF+ Q+ G + + TTP + Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L+ + G + VEASSHGL RL+ + AG F N+ ++H+++H T + Y Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260 Query: 230 KMRLFE 235 K LF Sbjct: 261 KANLFR 266 >gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 528 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 154/473 (32%), Gaps = 37/473 (7%) Query: 14 LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L + + V DSR AG +FVA G DGH F+ A+ +GA A++ Sbjct: 18 LSGPPGATQEELAALAVTGPVVFDSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVL 77 Query: 73 VSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSV 129 + + + T R + P + V + + LS A+ + P + +TG++GK++ Sbjct: 78 AAPDDAYRK-PWTARGSVPTVTVGDGDLLRALSALATAHLARLPRTTVIGLTGSAGKTTT 136 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + ++ + G + G + F T + A Sbjct: 137 KDLIGRLTRELGPTVAPKGSFNNELGFPITVLRTDED-------------TRYLVAEMGA 183 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-------RLFEELLPKES 242 G +H G N+G H+ + +A AK ++ Sbjct: 184 RGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDG 243 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---D 299 AI+ ADDA + + R +V + + +G+ Sbjct: 244 VAILNADDARVRGMAARTKGRVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHR 303 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRI 358 + L GE QV NAL AA + +G+ V E L R + + Sbjct: 304 YPVALRLVGEHQVSNALAAAATGLELGLAGEKVAEVLSAAEPDSKWRMAIGESADGVTVL 363 Query: 359 YVDYAHTSNSLEMILKNI----RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411 Y S+ LK + R R V G GD + +G++A+ L + Sbjct: 364 NDAYNANPESMRAALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRL-N 422 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 IA + + + + A+ DV++V Sbjct: 423 IAQTVAVGAGAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVLV 475 >gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] Length = 462 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 25/396 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + Q RK+ +++D+R + G +F+A+ G DGH FI QA +GA ++ Sbjct: 7 DWLANVLATDYQGDNRKVININTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQKGAIGVI 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V A ++ VV +TR L + + + +A+TG+ GK++V Sbjct: 67 VDHAVD---------TDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKTTVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I G G + P+ L + + A+ Sbjct: 118 CAAILSSKGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHI 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + K N+ H++ + Q AK +++ L ++ AI+ D + Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDG-LKEDGIAIVNCDSDF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 S+ + + + S + + T+ + LPG+ + Sbjct: 224 SQYWLDKLATRNIKCFSSSEKLDIWAEDISLDAQARASFTLCTKQHSVPVKLALPGKHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+AA L + + L + V GR + + I Y S++ Sbjct: 284 SNALIAAALTSEFDVSLEDIASALATMGEVKGRVNLIEASDSLTIIDDTYNANVKSVKAA 343 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + I RI+ + G G+ + +G+ A Sbjct: 344 IDLLSDIQGHRILALGDMGELGEDARKYHQEVGEYA 379 >gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] Length = 455 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 165/474 (34%), Gaps = 41/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E Q+ + I VS DSR ++ G +FV ++ DGH F+ Sbjct: 3 MQLSEVARALGIE-------SEDQYDQITITSVSFDSRSLEQGALFVPLI-ASNDGHEFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A + + + P+L+VD+T + L K ++A+ Sbjct: 55 EAAKQNGACAALWQKDHENR------PQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAI 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + P + Sbjct: 109 TGSNGKTTTKDMIAAVLSTQFNVAKTHDNFNNHIGVPMTVLSMEP-------------NT 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V + G H + + T +G HI++ +T+ +AKM + L Sbjct: 156 EILVVEIGMDHFGELDHLVHLLDPDVAVITMIGEAHIEFFKTRDRIADAKMEITHALKED 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +++RA + G + ++ + + Sbjct: 216 GLLVYNG----DEPLLIERAEKLDFETKTFGTGANVDLQAQNIVSDAEKTSFRVKQWPEL 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ G + V NAL A + ID +++ LE + R E+V ++ + Sbjct: 272 NFTIPMIGAYNVKNALAALCVGSEFQIDPRSMVKALEHFDLTRNRTEWVKASNGADILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415 Y + +L + T+GR V G G++ + KI D + Sbjct: 332 VYNSNPTACAEVLTAFQNAETTGRRYAVLGDMLELGEQGPKMHAGLADKIDPKKVDEVFL 391 Query: 416 TDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 P ++ + + G G + + + E L +D++++ KG Sbjct: 392 C--GPLMKNLAEALTDKFDQGKIHHYATGEKEQLVSDLKERLRSEDMVML--KG 441 >gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum CECT 5716] Length = 459 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+ E+ + +W + ++ V+ DSR+++AG +FV + G + DGH Sbjct: 1 MKMS------LAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ +A GA+A + + D P LVVD+ K L K ++ Sbjct: 54 YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLKALQQLGKYYLNKINPVVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ V I + P+ L + Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V L RL T +G HI++ ++ +AKM + L Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + +RA + + G Q + Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D F PL GE+ V NAL A + + + A + + L+ + + R E+V + + Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331 Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413 Y +++ +L + TI G+ + V G + + + I D Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464 + E A + G P + + R A+ A++ L DV+++ Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442 >gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 505 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 95/501 (18%), Positives = 161/501 (32%), Gaps = 59/501 (11%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I ++ + + P E + V DSR I G +FVA+ G DGH F Sbjct: 1 MIEITLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQS 60 Query: 63 AIAQGAEAIVVSSAYSLQ---------------DFSATIRSNTPILVVDNTRKFLSLFAS 107 AI +GA +V+ + D +A + VV K + A+ Sbjct: 61 AIDRGAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVAT 120 Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 L KH I +TG++GK+S + + +G + G + T Sbjct: 121 TLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTEDT 180 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 +L + A G G N+G H+ +++ Sbjct: 181 DFL-------------VAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIA 227 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 AK L E LP + AI+ ADD + R + + + Sbjct: 228 QAKGELVEA-LPADGIAILNADDELVAGMASRTKARVVCFSTDPRSNAEYVAEGITLDDV 286 Query: 288 KQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-G 344 + S + + G QV NAL A + + G+D+A V L H + Sbjct: 287 ARASFTMHSPNSEPQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVN 346 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRP 400 R + I Y +S+ + + +GR I V G G+ + Sbjct: 347 RMDVNTRADGVTVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVE 406 Query: 401 IMGKIALDLAD----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 + +LA +V ++ +E + GI + +A E+L Sbjct: 407 AHTALGNELARYRVTHLVVVGES--AETAALLSRAAERGIESV-SALDIEDATERVSEIL 463 Query: 457 ------------NKQ-DVLVV 464 DV++V Sbjct: 464 RTVPLGEENWRDRPDRDVVLV 484 >gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] Length = 444 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 142/416 (34%), Gaps = 39/416 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R I IF A+ G K +G+LF +A+ +GA +VV +LQD I Sbjct: 31 VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQDD--------RI 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V N + L A ++ +TG++GK++ + + Q + G + Sbjct: 83 ILVKNGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNN 142 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 L+ P +A + + + + + +S D + TN Sbjct: 143 H-IGVPLTLLSIPENAQIAVI--EMGANHLKEIELLSSIAQPDLGYV----------TNF 189 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H++ + K L+ L +I ADD + K + + Sbjct: 190 GHAHLEGFGGFEGVVKGKSELYNFLHEHHKTVLINADDPLQLQQAKAVESQISFSKNEST 249 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 Q + K I V +D L G + N A G+ + Sbjct: 250 QATYCIELKENV-----NNKIQVVVEDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEI 304 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391 +E + R + + + + Y +S+E L N T + +++ Sbjct: 305 KNGIENYYPANHRSQLIQKDKY-TLLMDAYNANPSSMEASLNNFSTFDGSKTVILGDMFE 363 Query: 392 -GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 G+ + + ++ DL + + +N ++I +R Sbjct: 364 LGESSKVNHQKIAQLTKDLGFEKIYLVGNN---------FSKIEGDFSDIQFFEDR 410 >gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Enterococcus sp. 7L76] Length = 457 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 78/474 (16%), Positives = 169/474 (35%), Gaps = 39/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y ++ ++L + + G+ I V G + + ++A LA AI ++ Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAI--EEV 389 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468 A+ + + E I ++L +D++V+ KG Sbjct: 390 FLYGSEMAYLADKLQETYAPTNIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 87/474 (18%), Positives = 160/474 (33%), Gaps = 46/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ K+ + + ++++ V DSR ++ +F+AI G + DGH+FI Sbjct: 1 MK--NMTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ I GA + ++ P ++V + + L A ++ V Sbjct: 59 PQTIRDGALCALSEKRIE--------NASYPYILVTSCEQALKDIAEHYRKSLNLKVVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + G + P+ + Sbjct: 111 TGSVGKTSTKEMIASVLGEKYNVLKTAGNFN----------NEIGLPLTIFNIREE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S+ G + RL I + TN+G H+++ +++ AK +F + P Sbjct: 158 EVAVLELGISNFG-EMERLAKIARPDICVITNIGVAHLEHLKSRDGILKAKTEIFLYMNP 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 S + DD S L ++ Sbjct: 217 NGSIILNGDDDKLSTVHPANGIQPVFFGLDDSRDFYADQVESCGLRG--TNAVFHTPNST 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F +PGE V NAL A+G++ + +E L + GR + T+S Sbjct: 275 FSAHISIPGEHMVLNALAGIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDSLTIIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S + L + + R I V G G ++ +GK A L +V Sbjct: 335 C-YNANPASTKASLDVLAKADT-RQIAVLGDMFELGPTEKQMHYEVGKYAAGLGIDILVC 392 Query: 417 DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 ++ + G + + A +LN +D ++V Sbjct: 393 --------IGQLSEHMATGASEQCSKTQVFYFETKDDFFEQADRILNPKDTVLV 438 >gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 460 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 69/398 (17%), Positives = 139/398 (34%), Gaps = 25/398 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + Q + + +++D+R I +G +F+A+ G DGH FI QA GA ++ Sbjct: 7 DWLANVLATDYQGDNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFIAQAKQNGAIGVI 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + P +V +TR L + + + +A+TG+ GK++V Sbjct: 67 VQHKVDV---------DIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSVGKTTVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I G G + P+ L + + A+ Sbjct: 118 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + K N+ H++ + A + L + AI+ D + Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA-KGEIFDGLKDDGVAIVNCDSEF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 S+ + + S + + + T+ + LPG+ + Sbjct: 224 SQYWLDKLDGRKVTRFSSSEKLDIWAENISLDENARASFTLCTKNAQIPVKLALPGKHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+AA L + + L + V GR + + + Y S++ Sbjct: 284 SNALIAAALTSEFDVTLEDIANALATMGDVKGRVNLINVSDLLTVVDDTYNANVKSVKAA 343 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + + + RI+ + G G+ + +G+ AL+ Sbjct: 344 IDLLSDMQGHRILALGDMGELGEEARQYHQEVGEYALE 381 >gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 459 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+ E+ + QW + ++ V+ DSR+++AG +FV + G + DGH Sbjct: 1 MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ +A GA+A + + D P LVVD+ + L K ++ Sbjct: 54 YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ V I + P+ L + Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V L RL T +G HI++ ++ +AKM + L Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + +RA + + G Q + Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D F PL GE+ V NAL A + + + A + + L+ + + R E+V + + Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331 Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413 Y +++ +L + TI G+ + V G + + + I D Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464 + E A + G P + + R A+ A++ L DV+++ Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442 >gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 448 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 77/454 (16%), Positives = 156/454 (34%), Gaps = 53/454 (11%) Query: 1 MKLQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ ++ + + + S +S+ I +F+ + G++ DGH F Sbjct: 1 MNL------WLSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENIL 118 + +A+ GA + + + P + V +T L A + ++ Sbjct: 55 VKEALQNGAISFISQKDFD--------DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + + G + Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPED------------ 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + +++K Q S E Sbjct: 214 ESGILIINNDNDILNLHKKEFKRKVVTIGIENESNFRAQNVQK-------HQNGFSFEVG 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + +YN+L A + + ID L+ E + + + RFE ++G Sbjct: 267 GYTYFIKSFNFHDIYNSLFAIAVGTILEIDRELIKEAILQKERLKRRFEV---INKGSIT 323 Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADI 412 VD Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ Sbjct: 324 VVDDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDV 382 Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444 I T +D I E G+ + + Sbjct: 383 VICT-----GKDAFYIFDEAKKKDGVKAYFVSKD 411 >gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 458 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + + INE+ D++ I G +F+A++G K D H+FI A+ + A V Sbjct: 9 IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 I+ + P ++V+NT L A + K ILA+TG+ GK+SV Sbjct: 69 K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I +++G + I + P+ L + + + AS G Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + + N+ H+ ++ AK +F L P + I +S+ Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ + + + T+ + P G + N Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNISN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ A+ I + L +V R E + I Y +S+ +K Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + + +I+V G+ ++G A A I + + SE Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397 >gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 459 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+ E+ + QW + ++ V+ DSR+++AG +FV + G + DGH Sbjct: 1 MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ +A GA+A + + D P LVVD+ + L K ++ Sbjct: 54 YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPIVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ V I + P+ L + Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V L RL T +G HI++ ++ +AKM + L Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D + +RA + + G Q + Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D F PL GE+ V NAL A + + + A + + L+ + + R E+V + + Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331 Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413 Y +++ +L + TI G+ + V G + + + I D Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464 + E A + G P + + R A+ A++ L DV+++ Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442 >gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] Length = 448 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 138/388 (35%), Gaps = 25/388 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I + I + + V++DSR +G +FVA+ G++ DGH +I A++ Sbjct: 1 MIGDWLTDDIAKAVGGAAEGDSVAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAAVS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++ + ++ ++V ++ L + + + AVTG++G Sbjct: 61 QGAVAVMAQAKA---------NADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + I + G G + T Sbjct: 112 KTTVKELLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEE-------------HRSAVF 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + AS+ G + + + N H++ + A LP++ A+ Sbjct: 159 ELGASAVGEIAYTVALARPQVAILNNAAAVHVEGFGDLASIVKA-KGEIVCGLPEDGVAV 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DDA ++ A + + + + N +S D P Sbjct: 218 LNKDDANFSAWVEMAGARKVISFGLDD-SAMVRAQNIHLELNGSTFRLSAPEGGIDATLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG V NAL AA +A+G V + L V GR + + + Y + Sbjct: 277 LPGAHNVRNALAAAAAALALGWTLEEVRDGLASAAPVKGRMNKLLGINGSVILDDTYNAS 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393 S++ + + GR IV G G+ Sbjct: 337 PTSMKAAIDVLARY-PGRRIVALGHMGE 363 >gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 77/421 (18%), Positives = 142/421 (33%), Gaps = 36/421 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL D + ++ ++ IN V +DSR ++ G +F I G DGH F Sbjct: 1 MKLT---LGDVQHCLTGMAEECREFA--VINAVRTDSRAVEPGDLFFCIEGWNFDGHEFA 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA +GA A+V S P+++V +T + L AS ++AV Sbjct: 56 AQAETRGAVAVVASR--------MPEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAV 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK++V + + R + + S Q Sbjct: 108 TGTAGKTTVKEMLAAVVSRKFTVAKNYRNLNNQIGLPVSML-------------KADSGQ 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G + TN+G H++ AK L + + + Sbjct: 155 EVWIMELGISVKGDMEELAVIASPDVAVITNVGPGHLEGLGDVAGVARAKSSLLKYM-RQ 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+ D + + + + + + Sbjct: 214 DGTAIVSKDYPELWAAATELTGSPVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQG 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P G+ N A A+G+ ++ ++ + RF G + + Sbjct: 274 EFTAPFCGDHYAENVACVAAAANALGLPFDDIVAGVQAVEADCQRF---CCRPMGDALVI 330 Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAI 414 D Y S+ ++ + R +V+ GD Q + +G++ D+A A+ Sbjct: 331 DDTYNANPLSMGRSIRTAVAMAKDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAV 390 Query: 415 V 415 Sbjct: 391 F 391 >gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] Length = 456 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 137/422 (32%), Gaps = 33/422 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ + + + + ++ + + + + VS DSR I+ G +FVA+ G + DGH ++ Sbjct: 2 LKAMTFSELSQALSARVLS----SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLND 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+GA +V S P L+V +TR L + + + AVTG Sbjct: 58 VAAKGAVGALVQCEVP--------ESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++V + + + G G + P Sbjct: 110 SSGKTTVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPE-------------HTA 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + + + N E L Sbjct: 157 AVIELGASRVG-EIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301 A++ DD + RA +V H + T+ Sbjct: 216 TAVLNLDDKAFETWRARAAGRKVLTFAVLNAAADFHASDITVDARGCPSFTLHTPQGREP 275 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G V NAL AA A+G+ + L + V GR + I Sbjct: 276 VQLNLLGNHNVANALAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDT 335 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTD 417 Y +S+ + ++ GR ++V G G+ +QG R +G A D Sbjct: 336 YNANPSSINAAVDLLKGF-DGRKVLVLGDIGELGEWAEQGHR-EVGAYAAGKVDALYAVG 393 Query: 418 DN 419 N Sbjct: 394 PN 395 >gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 458 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + + INE+ D++ I G +F+A++G K D H+FI A+ + A V Sbjct: 9 IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 I+ + P ++V+NT L A + K ILA+TG+ GK+SV Sbjct: 69 K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I +++G + I + P+ L + + + AS G Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + + N+ H+ ++ AK +F L P + I +S+ Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ + + + T+ + P G + N Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ A+ I + L +V R E + I Y +S+ +K Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + + +I+V G+ ++G A A I + + SE Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397 >gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella denticola CRIS 18C-A] Length = 437 Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 56/364 (15%), Positives = 116/364 (31%), Gaps = 23/364 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR G IF+A+ G DG+ F A+ +G VV + + Sbjct: 16 VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + P ++ +TGT+GK++ + + + Sbjct: 70 ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + + + AS G + + ++ G TN+ Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + + E+ + + Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNVDLMEMAAQREFSRIITYGQDE 236 Query: 273 QGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 Q ++ + L G + + N L A + + G+ Sbjct: 237 TADVQGNVVSCAPFLKFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTP 296 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V LE R + + I Y +S+ ++N R + + + G Sbjct: 297 QQVCHALENYIPHNNRSQLT-ETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAILG 355 Query: 390 CGGD 393 + Sbjct: 356 DMRE 359 >gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella melaninogenica D18] Length = 440 Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 118/367 (32%), Gaps = 26/367 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IFVA+ G DG+ F A+ +G ++ + + Sbjct: 16 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAG------DERY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + ++ +TGT+GK++ + + + Sbjct: 70 ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + + + AS G + + ++ G TN+ Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + E+ ++ Sbjct: 177 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQRAFDRIITYGQDE 236 Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 CA K + T ++ L G + + N L A + + G Sbjct: 237 TADVQGYVVSCAPCLKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFG 296 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + LE R + + I Y +S+ ++N + + + Sbjct: 297 VTPQQINYALENYVPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFQLMEVENKMA 355 Query: 387 VFGCGGD 393 + G + Sbjct: 356 ILGDMRE 362 >gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 472 Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 85/463 (18%), Positives = 156/463 (33%), Gaps = 28/463 (6%) Query: 10 DFPELINQLSIFPMQWRERK--INE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + EL + + + + + + V DSR + G IFVA+ G DGH +I + A Sbjct: 6 NIEELSLKFPVTVAGNGDVRGIVTDPVVVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFA 65 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA +V A+ + + LVV++ L A+ ++AV G++G Sbjct: 66 KGAHWAMVKKAWYESEGAPAAPEGCGFLVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNG 125 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ V + G +N L P + + + ++ + Sbjct: 126 KTTTKEMVAAVLGTGFTVQTSKGNL--------NNHLGVPLTLLQLRRQTGIAVVEMGIN 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 L+ R G TN+G +H+++ + + RLF L Sbjct: 178 HPGEMELLLELAR-----PTHGLLTNIGHEHLEFLLNLEGVAAEETRLFRYLQQHGGTCF 232 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ADD + KE + + + Q + G Sbjct: 233 VNADDLWLKEAAEGLTGSFTYGTADDSQIACQARHIAVDRSGRVSFEFVSGGLSERIALH 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 G+ V NAL AA + G+ + + LE L PG ++ G + D Y Sbjct: 293 FIGKHNVINALAAAAVGTYFGLSLEQIKKGLEALRPSPGWKRLEVQDAGGVVLINDTYNA 352 Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+S+ + + + I G+ I V G G+ + G+ + T Sbjct: 353 NSDSMRLAIDALVDIPCSGKKIAVLGDMLELGEAGIVEHEKTGRYIQQSPIDLLFTYGRH 412 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I G NR + + ++ D ++ Sbjct: 413 AR------LYGIEAGARCHGHYENRQKLLDELKMVVQPGDAVL 449 >gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) [imported] - Buchnera sp. (strain APS) gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 455 Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + + INE+ D++ I G +F+A++G K D H+FI A+ + A V Sbjct: 9 IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 I+ + P ++V+NT L A + K ILA+TG+ GK+SV Sbjct: 69 K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I +++G + I + P+ L + + + AS G Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + + N+ H+ ++ AK +F L P + I +S+ Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ + + + T+ + P G + N Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A+ A+ I + L +V R E + I Y +S+ +K Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + + +I+V G+ ++G A A I + + SE Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397 >gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] Length = 460 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ I + + + + + ++N V D+R + G +F+ + G DGH FI Sbjct: 1 MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + D + + P LVVD+ + K ++AV Sbjct: 58 ENAIKGGAVATLW-----ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + SG + + + + Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G ++ T +G HI++ T+ +AKM + L Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D +++RA ++ G + D Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ V NAL A + I +++ L + R E++ N + Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403 Y + +L GR IVV G GD+ + Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLA 382 >gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0012] Length = 474 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVESSNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2141] gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0645] Length = 474 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] Length = 454 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 89/469 (18%), Positives = 172/469 (36%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + ++ E I+ VS+D+R I+ G +FVA+VG + D H F QA+ Sbjct: 1 MIKVTLSQIAD-ITRGERFGDELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + N P +VV +T+ L FAS ++ +A+TG+ G Sbjct: 60 AGAGALLVEKRLDV---------NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I Q G F G + P+ L + Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +K N+ H++ + A + L AI Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLSAGGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302 + D + + + S + + I+ ++ + Sbjct: 217 VNLDSNGEAKWDEVLADKKVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIEL 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + G+ V NA+ A+ + + +G V L+ L+ V GR E + + I Y Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 + +++ + + R +++ G+ +G+ A ++T Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT---- 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468 D + I +++ GI F IE I+ ++ ++V KG Sbjct: 393 YGADAKVI-SDLCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437 >gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 467 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 74/412 (17%), Positives = 146/412 (35%), Gaps = 32/412 (7%) Query: 1 MKLQDL--IYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M L DL I K E+ + ++ I ++ KI VS+DSR I G +++ +VG DG Sbjct: 2 MALGDLKMIEKTLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDG 61 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +FI + +GAEA ++ + + P + V +T+K L A+ + Sbjct: 62 RIFIKECEDKGAEAFIIDDPTKINKTVS-----IPYVRVADTKKALQDLATAYRKELSCK 116 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ + +I + G + + P Sbjct: 117 VIGITGSNGKTTTKDLLYKILSEKYKTQKTCGNLNNEIGVPKTVLSLDPD---------- 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V + + + G +K TN+G H+ +T+ AK+ + E Sbjct: 167 ---TEVAIIELGTDNFGDISLTSRMVKPHIAMITNIGDAHLHNLKTRSGILKAKLEILEG 223 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + + + + + + K+ + I Sbjct: 224 MEDDGIFIYNI----DDPTMKEEIPTYDIKQKVLSFGRSDKADFKIVFEKSPTS-IIRFS 278 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 ++ F PL GE +YNA + +G++ ++ ++ R E + + Sbjct: 279 HENDHFEVPLMGEHNIYNAAAVVMISEMLGLNKEMIDAGFMEVKSSQNRTELLECDGFD- 337 Query: 357 RIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK 404 + Y SL L+ + R IV G+ + +GK Sbjct: 338 ILDDSYKSNPQSLLAGLETTYMLEGYKRKIVCLADMLELGENEVDLHREVGK 389 >gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47_FAA] gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47FAA] Length = 487 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 159/481 (33%), Gaps = 53/481 (11%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ + + I +S DSR ++ +FV I+G D H F+ QAI GA A+ Sbjct: 12 VLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNGAAAVFT 71 Query: 74 SSAYSLQDFSATI----RSNTP---------ILVVDNTRKFLSLFASRLYGKHPENILAV 120 S ++ A I + P + V +T+K L F + ++ + Sbjct: 72 SRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQKLPLVGI 131 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + G +++ PI +A + Sbjct: 132 TGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQ----------VGVPITIA---AIPKQA 178 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S G ++ TN+G HI+ +Q K+ + + + Sbjct: 179 QIGVIELGMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAEN 238 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S + D + + ++L + + ++ + E K Sbjct: 239 GSLILNGDDRLLRSVIPE---GNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRV 295 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + G V NAL A + GI LE+ GR + I Sbjct: 296 TVRLRVMGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTLKGGITVIDD 355 Query: 361 DYAHTSNSLEMILK---NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIA 413 Y + S++ L+ ++ +GR I V G +G+ IA+ D Sbjct: 356 SYNASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQV 415 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ++ + AEI HG+ + + + L + D ++ K Sbjct: 416 VL---------LGGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLF--K 464 Query: 468 G 468 G Sbjct: 465 G 465 >gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] Length = 454 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 84/474 (17%), Positives = 149/474 (31%), Gaps = 55/474 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ L + L + +IN + +D+R + +G +F+A+ G DGH FI Sbjct: 1 MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+ GA A+V + +V++T A+ + I+ V Sbjct: 61 PQALTAGAIAVVTDRPVE------GLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGV 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + G + + +P Sbjct: 115 TGSVGKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPD-------------- 160 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 VE + G Q L TN+G HI + + Sbjct: 161 -HDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGS-ELAIAEAKCELLAHQ 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P ES AI+ D+A E +R + + I + + + Sbjct: 219 PPESTAILNRDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPL----- 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G N L A + +G+D + + + GR + Sbjct: 274 ------PLAGVHNASNYLAAIAVAQCLGLDWQQLQ-SGLTVELPKGRARRYQWGQDVVLL 326 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414 Y S+ L + R + V G GD +G L D Sbjct: 327 DETYNAGLESMLASLDLLANTPGKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLF 386 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLV 463 + ++P + I G G + + + A++T L D L+ Sbjct: 387 LLANDPNT-------DAIAAGANGVETQSFSDGPSLVAALKT---TLQPGDRLL 430 >gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella melaninogenica ATCC 25845] Length = 469 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 118/367 (32%), Gaps = 26/367 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IFVA+ G DG+ F A+ +G ++ + + Sbjct: 45 VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAG------DERY 98 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + ++ +TGT+GK++ + + + Sbjct: 99 ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNN 158 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + + + AS G + + ++ G TN+ Sbjct: 159 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 205 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + E+ ++ Sbjct: 206 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQRAFDRIITYGQDE 265 Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 CA K + T ++ L G + + N L A + + G Sbjct: 266 TADVQGYVVSCAPCLKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFG 325 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + LE R + + I Y +S+ ++N + + + Sbjct: 326 VTPQQINYALENYVPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFQLMEVENKMA 384 Query: 387 VFGCGGD 393 + G + Sbjct: 385 ILGDMRE 391 >gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 460 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ I + + + + + ++N V D+R + G +F+ + G DGH FI Sbjct: 1 MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + D + + P LVVD+ + K ++AV Sbjct: 58 ENAIKGGAVATLW-----ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + SG + + + + Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G ++ T +G HI++ T+ +AKM + L Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D +++RA ++ G + D Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ V NAL A + I +++ L + R E++ N + Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403 Y + +L GR IVV G GD+ + Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLA 382 >gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] Length = 488 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 98/480 (20%), Positives = 167/480 (34%), Gaps = 43/480 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L +++ E + + ER V++DSR + G +FV +VG +DGH +I QA+ Sbjct: 17 LSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQAL 76 Query: 65 AQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118 QGA + L + +VV NT L A+ K P+ + Sbjct: 77 EQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTALQCAAAAYVKKFPDLIKI 136 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG+SGK++ + + R G ++ T P+ + K + Sbjct: 137 GITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSE----------TGLPLSVFKIRAE-- 184 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + + G + + TN+G HI ++ A K ++F Sbjct: 185 -HEVGIFEMGMNRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFT 243 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A I A D Y+ + + R I + + Sbjct: 244 -ADCVAFIPAADPYADFLAENCGGTVVRYGVNTDPVSRIKNAGLAGTEFL--------YR 294 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L PLPG +AL AA L +G + + LE + + GR + +G + Sbjct: 295 QVPILLPLPGAGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQIIGGPVSVVQD 354 Query: 359 YVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 Y +S+E I GR I V G G + + A + Sbjct: 355 C--YNANPDSMEQALDFFASLDIEPGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVL 412 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEM----LNKQDVLVVAGKG 468 +V S E++ E G + +A I A + L + DV+++ KG Sbjct: 413 LVCIGRAVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLL--KG 470 >gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] Length = 453 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V Sbjct: 19 GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G Sbjct: 71 -LEADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + G + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + + AI+ D + + Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + D + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + L L V GR + I Y + +++ + + + ++ R Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] Length = 465 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 163/479 (34%), Gaps = 45/479 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ +KD +L L + I +S+DSR I+ G FV +VGN DGH ++ A Sbjct: 2 DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAF 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 G +A VVS Y+ + + P VV +T A ++AVTG+ Sbjct: 62 DLGIQAAVVSEKYN-----GLVPTGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSV 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ I G G + + + + Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRGNENNDVGVPKTLLSGS-------------ETDAAFV 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G + TN+G+ HI +++ AK + L P Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301 I + D K ++++ RV G+ ++ + + + Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNFI 283 Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F PL G N L+A + +G+ + + + + R G Sbjct: 284 LFEGRKFKLPLEGRHNAMNFLLALTVATELGLSIKKLDQLKINMPIGRNRL-----VDCG 338 Query: 356 GRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410 + +D Y + S+ L+ + + GR V G G + K A++L Sbjct: 339 QYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIELG 397 Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E+ I+ I +P +A + + L+ D +++ KG Sbjct: 398 LTGIVFVSC---GEESNIIKKTIKE-LPNHDVVSTPKDAAMSLLPWLSPGDNILI--KG 450 >gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] Length = 474 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKNTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis 62] Length = 457 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 169/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A + P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDVPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. [Bacillus cereus E33L] gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus E33L] Length = 454 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 77/474 (16%), Positives = 173/474 (36%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 4 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA + + +Y PI+ VD+T L A + ++ + Sbjct: 57 KEAMDNGAISSLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V ++ I + + G ++ P+ + + Sbjct: 111 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E Q R AK +L + Sbjct: 159 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E+ +Y D + R + + L ++ V + Sbjct: 216 ENGLFLYNGDE---PLFSRNNKTSGVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ ++N +V + + + + E L+++++ RF+F+ I Sbjct: 273 QYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIIND 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + + +GK+ + + + T Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFT 392 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + + E N+ E ++++ K+DV+++ KG Sbjct: 393 ----YGELAKIVAEEASKKYDTGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 440 >gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 460 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 90/452 (19%), Positives = 158/452 (34%), Gaps = 48/452 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ E QW++ +I V+ DSR + +G +F+ + G + DGH ++ Sbjct: 3 MKLAEIAKAIGAE------NNIEQWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A + D T + PILVVD+ + L + K ++AV Sbjct: 56 ESAFANGAVATLW-----ASDHDVTTTEDQPILVVDDPLESLQQLSKYYLHKINPIVVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ I + + P+ L S Sbjct: 111 TGSNGKTTTKDMTASILSTQLNVTKTHANFN----------NEIGVPVTLLNMESS---T 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G L + + + + + L + Sbjct: 158 EVVVVEMGMDRPG-QLDFLSKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ + +RA N R ++ G Q H E D Sbjct: 217 DGTFIFNGDEP---LLQERAANVEQRKVTFGRQLTDDFYATSVNQHETSIDFKVNEWPDE 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ GE+ V NAL A + + I A + + L+ + + R E+V + Sbjct: 274 EFTIPMVGEYNVNNALAAIAVGKQLHITPAHIKKALKNVELTENRAEWVNGAQGERILSD 333 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK I + +G+ I V G + + +A ++ Sbjct: 334 VYNSNPTAAKQVLKTIEELPTTGKRIAVLGDMLELGDASARLHASLAANI---------- 383 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 DP+KI + G E N +A+ Sbjct: 384 ----DPKKIEEVYLVG----SEMENLQDALEK 407 >gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 454 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 76/474 (16%), Positives = 178/474 (37%), Gaps = 43/474 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+++ + + +I+ V DS++I+ G +FV I+ K DGH ++ Sbjct: 4 MNLKKL-----EEVVDGVG-LQESFHHIEIHGVCIDSKNIKEGNLFVPIIRVK-DGHGYV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A ++ + Sbjct: 57 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + Sbjct: 111 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRD---T 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK+ + + L + Sbjct: 158 EFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEE 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ R +N + L ++ V + Sbjct: 218 GLLLYN-----GDETLLSRKNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKI 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ + N +V + + + + + L ++++ RF+F+ + I Sbjct: 273 QYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIIND 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + +GK+ + T Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKEAETYHREIGKMLNQENISYVFT 392 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E E + E N+ + ++++ K+DV+++ KG Sbjct: 393 ----YGEMAEIVAEEARKKYDTGKVQSYNNKAKIAEEVLKIITKKDVVLL--KG 440 >gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-63q42] gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile ATCC 43255] Length = 457 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + + ++++ DSR A FVAIVG DGH F+ A G + + Sbjct: 11 LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + S+ ++ V +T L + K + VTG+ GK++ + Sbjct: 69 ---KNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + P+ L + + S Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ +D + +N+G H++ +Q+ A + + I+ DD + Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ H + ++ + + + GK + P GE +Y Sbjct: 232 STLKEKEHAYKLKTFGFNK-NNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A + + + I + + L+ R + + I Y + +S++ L Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349 Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 K + R+ + + G + G R ++GK +++ DI I +N E Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ NR + E++ D ++V KG Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442 >gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] Length = 485 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 150/382 (39%), Gaps = 33/382 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++D+R I+ G IF+A+ G+ DGH +I A++QGA A +VS S ++ Sbjct: 56 TRIATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPIS---------TDI 106 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV++TR L AS +H + ++A+TG+SGK++ + I R + G Sbjct: 107 PQLVVNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 166 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + L+ + + A+ G + + ++ Sbjct: 167 LNNDLGVPMML-------LELSDHHR------YAILELGANHIGEIAYTTEIVQPDVACI 213 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H+ +++ K L AI+ D ++ ++ + A V+ Sbjct: 214 LNIGTAHLGEFGSREGICQTKA-EIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG 272 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G V + + + + + D PL GE V NAL AA A+ ID Sbjct: 273 FGNTDVSASHLDVE--PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDI 330 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVV 387 ++ LE GR + G +D Y +S+ K + T +++V+ Sbjct: 331 NDIVVGLENARPAKGRLN---SQLLGMHRLIDDTYNANPHSVRAAAKVLAAQTGTQVMVL 387 Query: 388 --FGCGGDRDQGKRPIMGKIAL 407 GD + +G+ Sbjct: 388 GDIAELGDAAVSEHQSLGRTIA 409 >gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] Length = 454 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 82/428 (19%), Positives = 160/428 (37%), Gaps = 35/428 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I +++ + + I+ VS+D+R I G +FVA+VG + D H F QA GA A++V Sbjct: 9 IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + N P +VV +T+ L AS ++ +A+TG+ GK++V V Sbjct: 69 KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + P+ L + + A+ G Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252 + +K N+ H++ + + AK +++ L + D Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDTL 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V+ + ++ + IS + ++ + + G+ V Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A+ + + +G + L L+ V GR + +S I Y + +++ Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428 + + R +++ G+ +G+ A ++T D KI Sbjct: 347 VDLLGAFRGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399 Query: 429 RAEIIHGI 436 +E+ HGI Sbjct: 400 ISELCHGI 407 >gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2137] Length = 474 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] Length = 476 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 68/444 (15%), Positives = 143/444 (32%), Gaps = 39/444 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IF+A+ G +G+ F A+ +G +V A + N Sbjct: 51 VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAG------NNRF 104 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN A ++ +TGT+GK++ + + +G + Sbjct: 105 ILVDNALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNN 164 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + + AS + + ++ G TN+ Sbjct: 165 DIGVPRTLLEMTSD-------------DEIAVIEMGASHPKDIEKLVTYVEPTCGLITNV 211 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + N K L++ L + + + E+ ++ Sbjct: 212 GRAHLQGFGSFEGVKNTKGELYDYLKAHNALLFLNESNPDLVEMAEQREFERVITYGQDN 271 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAI 325 CA K + ++ L G + + N L A + + Sbjct: 272 TADVKGEVVSCAPLLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHF 331 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G++ + LE R + I Y +S++ ++N R + + Sbjct: 332 GVEPQKICHALESYVPSNNRSQLT-ETKDNKLIVDAYNANPSSMKAAIENFRLMDIKNKM 390 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 + G +G + + + E+ + E F + + Sbjct: 391 AILGDM--------RELGDVTAEEHQRVVDELIASGLENVWLVGEEFGKTNCSFRKFADI 442 Query: 446 IEAIRTAIEMLNKQD-VLVVAGKG 468 E ++ AI D +++ KG Sbjct: 443 EE-VKAAIAAQKPIDHYILI--KG 463 >gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 457 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0043] gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF] Length = 474 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4000] gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0017] gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0027] gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4244] gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0312] gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1302] gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1341] gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309B] gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309A] gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1467] Length = 474 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] Length = 457 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Asticcacaulis excentricus CB 48] gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Asticcacaulis excentricus CB 48] Length = 462 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 101/480 (21%), Positives = 166/480 (34%), Gaps = 55/480 (11%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ ++ DSR +Q G IF+A+ G + DGH F+ QA Sbjct: 8 TELLKATGGTFAGLSGDASALHA----TGITFDSRQVQPGDIFLALSGVR-DGHDFVGQA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 AQGA + P L+V + K L + + P AVTG+ Sbjct: 63 FAQGAVCALTRKPVD----------GGPCLMVPDVLKALEKLGAYARDRAPAMRGAVTGS 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+SV V R+G + + + P+ LA+ + Sbjct: 113 VGKTSVTQMVMAALSRAGRAHSAVKSFNNH----------IGVPLTLARMPADTERAVFE 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNAKMRLFEELLPKES 242 +H + L + H + + + L Sbjct: 163 IGM----NHANEITPLSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGG 218 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI+ AD+ + E+ +RA G +V G +G L + + QV ++ G+D Sbjct: 219 LAILNADNHWFAELNERASEMGAKVQCFGEAEGADACLISHEVVDGRAQVCATLHGRDIA 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYV 360 F G+ Q NAL +C A+ +D+A L L + GR E + G + Sbjct: 279 FTLAHTGKHQALNALSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLI 338 Query: 361 D--YAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDR--DQGKR--PIMGKIALDLAD 411 D Y S+ L + R +T GR I V + D+ KR + + D Sbjct: 339 DESYNANPISMVATLNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVD 398 Query: 412 IAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 V R PE +R +E ++TA+ D++++ KG Sbjct: 399 QVFVAGPLMRALWDVLPEALRGAYAATAAELLEP------LKTAL---RPNDIVMI--KG 447 >gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] Length = 472 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 41/473 (8%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E++ + + ++ DSR + +F+AIVG + DGH F+ QAI G Sbjct: 8 TLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGGV 67 Query: 69 EAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 IV+ ++ ++ + +VV +T + L A++ +I A+TG++GK+ Sbjct: 68 RGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGKT 127 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + G +N++ P + + V + Sbjct: 128 TTKELTAAVLAAKYRVHKSTGN--------HNNQIGLPFTLLGLGPAHQWA-----VVEL 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + G + G TN+G H++ + + AK L E + A++ Sbjct: 175 GMNHFGEIARLTQICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMA--NKTAVLN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + G VL + K + + + T+ ++ ++ L Sbjct: 233 LDDKLVSTLADK--YQGETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLH 290 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ V+NAL AA + ++ G+ + + LE ++ V GR V + I Y Sbjct: 291 GDCMVHNALAAAAVGVSAGVSPKEIRDALETVNPVKGRQNVVSLGNDVQLIDDAYNANPA 350 Query: 368 SLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 S + ++ + + GR+I+ GD +G++A + Sbjct: 351 SFAAAVMTLQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYA 410 Query: 422 SEDPEKIRAEIIHGIPGFIE-----KGNR-IEAIRTAIEMLNKQDVLVVAGKG 468 K E GI R EA+ +D ++V KG Sbjct: 411 GWT-AKGAREAGMGIDQVFIDEKPNIVTRLAEAV-------QAKDRILV--KG 453 >gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] Length = 453 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 152/393 (38%), Gaps = 26/393 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQRE---------L 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P+ L ++ + G + + A+ G + +K Sbjct: 132 QGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKPDV 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + A + L + + AI+ D + + + Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKTVK 237 Query: 267 VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S + + V T+ + D + G+ V NAL AA L + + Sbjct: 238 TFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSLEM 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G A + L L V GR + I Y + +++ + + + ++ R + Sbjct: 298 GASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVRWL 357 Query: 386 VV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++ GD +G+ A ++T Sbjct: 358 ILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1] Length = 445 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 82/463 (17%), Positives = 161/463 (34%), Gaps = 50/463 (10%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL L + ++ S DSR + G +F A+ G + DGH F+ A+ +GA V Sbjct: 5 ELAKVLRGELRGDPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGCV 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V + + V +T++ L A G ++ V G+ GK++ Sbjct: 65 VERDVEHAGKFS--------IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKTTTKEL 116 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + S G ++ + P + + + + AS+ Sbjct: 117 IHHLLSNAAASFRSEGNLNSQ--------IGLPLVV-----CNMPLEVDYAVLELGASAV 163 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ + T LG +H++ T + +F I + Y Sbjct: 164 GDVERLVEVAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHYALEY 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +R G +G ++ KV + E F PL V Sbjct: 224 YDLPRERVTTFG--------EGGDLNAGKVRLSLKGTEFEFWGE----GFSVPLLSRGVV 271 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLE 370 N L A G+ ++G D E L+ GR + + G VD Y S+ Sbjct: 272 QNVLAAFGVLTSLGYDPRDFREALKSFTPPQGRMNLL---NFGNFFVVDDTYNANPPSVR 328 Query: 371 MILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALDLA-DIAIVTDDNPRSEDP 425 L + ++ + + + V G + +GK+ +L D+ I E+ Sbjct: 329 NALTTLASLQTTSKKVAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIF-----HGEES 383 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ E I + + + + ++ + +++++V KG Sbjct: 384 KRSYEECIKHGGNALFCDKKEDIVDELLKYMRDKNIILV--KG 424 >gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] Length = 450 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 41/445 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NE+ +S+ I+ G +F+A+ GNK DGH +I AI QGA A++VS + D + Sbjct: 23 NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIADKNK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ K L A +A+TG+ GK+S ++ + Q L+ G Sbjct: 76 -IILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNHLGL-------------LINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A E K+ A+I +D ++ + Sbjct: 182 NISEAHLEFFNSLEDIAEA-KCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHN 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + L + + + + P + N + + D Sbjct: 241 FGKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLN 300 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 +L+ + + GR + I Y + S++ L+ ++ + + + G Sbjct: 301 KAAGYLKNIPMTKGR-GKIINIGNSRIICDYYNASPTSMKAALEYLKQMPATNKTAIIGE 359 Query: 391 G----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKG 443 + ++ + ++ I + N + PEKI I I Sbjct: 360 MLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIAST 419 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 N ++ +++++ KG Sbjct: 420 N---------DLFKNDELILI--KG 433 >gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] Length = 454 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 171/469 (36%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + ++ + I+ VS+D+R I G +FVA+VG + D H F QA+ Sbjct: 1 MIKVTLSQIAD-ITRGERFGDDLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + N P +VV +T+ L FAS ++ +A+TG+ G Sbjct: 60 AGAGALLVEKRLDV---------NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I Q G F G + P+ L + Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +K N+ H++ + A + L AI Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLSAGGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302 + D + + + S + + I+ ++ + Sbjct: 217 VNLDSNGEAKWDEVLADKKVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIEL 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + G+ V NA+ A+ + + +G V L+ L+ V GR E + + I Y Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 + +++ + + R +++ G+ +G+ A ++T Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT---- 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468 D + I +++ GI F IE I+ ++ ++V KG Sbjct: 393 YGADAKVI-SDLCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437 >gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] Length = 431 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 139/391 (35%), Gaps = 32/391 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS+D+R I G +F A+ G D + F P+A+ QGA +V+ D I + Sbjct: 14 TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVID------DPKYFIEDDE 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + + K L A+ + I+ +TG++GK++ + + Q + +G Sbjct: 68 RYFLAKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L S + V + A+ G + + + G T Sbjct: 128 NNH----------IGVPLTLL---SIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+GR H++ K LF+ L + I + D + KR Sbjct: 175 NIGRAHLEGMGGPAGVLKTKTELFQFLRANKGTVFINSQDPVLSNMAKRFDKPVLYPAKG 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + +V + V +VEG + +L L G + N A + ++ Sbjct: 235 DF-------CEVGFVEANPFVKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMK 287 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 +E + R + + I Y +S+E+ ++ +T + ++ Sbjct: 288 GAIEAIVNYQPSNMRSQLL-EKRSNLIILDAYNANPSSMEVAIRTFGEMTGKKHKMIILG 346 Query: 391 G----GDRDQGKRPIMGKIALDL-ADIAIVT 416 G+ + + +G+I + + T Sbjct: 347 DMFELGEHAEEEHAKLGEIISEYEIEKVCFT 377 >gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter sp. PRwf-1] gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 505 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 93/421 (22%), Positives = 163/421 (38%), Gaps = 31/421 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ + + + + +D+R I+AG IF+AIVG DGH F+ A+ Sbjct: 18 LLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSFVASAVE 77 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTS 124 +GA A +VS S N P L VD+TR A+ +HP ++A+TG+S Sbjct: 78 KGAIATIVSQPLS--------EVNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTGSS 129 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V ++ I + +S + T+ ++ +N P L Sbjct: 130 GKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVP-----MMLLELEQQHRYAV 184 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + +K N+G H+ + K + L + S A Sbjct: 185 LELGANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKA-EIYQPLTQASTA 243 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ DD YS ++M A ++ G+ K+ A++ + T +++ + Sbjct: 244 VVPCDDDYSDQLMSTAKQHTDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFA 303 Query: 305 -------------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 P+ GE V NAL AA A G+ + L+ + L + GR Sbjct: 304 IEGKAPAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRL 363 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDL 409 I Y NS+ + RI+V+ G GD + +G+ + Sbjct: 364 GQH-HIIDDTYNANPNSMRAAADVLAAQEGTRILVLGDIGELGDDAVSEHYKLGEAIANK 422 Query: 410 A 410 A Sbjct: 423 A 423 >gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] Length = 464 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 84/451 (18%), Positives = 166/451 (36%), Gaps = 52/451 (11%) Query: 28 RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 IN + DSR+I G IFVA G K DGH F+ QA GA +V+ + Sbjct: 26 LPINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIVTRVQEI------- 78 Query: 87 RSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P L+V N + + A + ++ +TG++GK++ S + + + G + Sbjct: 79 --DLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTTTKSVLAYVLSKFGNTV 136 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + ++ P+ L Y + + ++ + Sbjct: 137 ATHGN--QNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKIA-----------VP 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + G H++ + ++ + LP+ S ++ DD + + G Sbjct: 184 DIAVLLSAGHAHVEKSGSLESV-CSMKAELARDLPEGSKVLLNYDDPRIARL-----SVG 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R + V K + ++ + + L G+ QV N L A + Sbjct: 238 NRYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALSTLVL 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--G 382 +G D+ + ++ +++ + GR +++ I+ Y + S++ L ++ + S Sbjct: 298 LGFDAEVCARYISEVNPIDGRMQYIPLGDF-SIIHDAYNASFESVKCALDSLVVLGSLAK 356 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNP---RSEDPE-KIRAEIIH 434 R I V G D MG++A L + TD N SE I E+ Sbjct: 357 RRIAVLGRIHD--------MGELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAK 408 Query: 435 GIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463 G+P + A ++ + D+++ Sbjct: 409 GVPNKEIVWFEDLETAKHEIFDLFSPGDIVL 439 >gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] Length = 475 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 152/415 (36%), Gaps = 31/415 (7%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 E + P+ R+ + + V+ D+R +Q G +FVA+ G + DGH ++ QA+ GA A Sbjct: 9 AEAVVATGGTPLG-RDWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQTGASAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS A + ++ P+L+V + L+ + I AVTG+ GK+ Sbjct: 68 LVSR------RPADLAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKTGSKE 121 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G + G + +P+ LA+ + + + Sbjct: 122 MLAAALAAYGTTHASKGNLNNH----------IGAPLSLARFSRDAAFAVFE-LGMNHPE 170 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 RL ++ A TN+ H + + +AK +F+ L P + + + Sbjct: 171 EIRPLSRL--VRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQ 228 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A R++ G L + H +V + G+ + G Sbjct: 229 FGRLAGHAGRLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRH 288 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNS- 368 N+L A +A+G+D A+ + L ++ + GR + + G +D ++ ++ Sbjct: 289 WAINSLGVAATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPP 348 Query: 369 ----LEMILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV 415 + R R I V G + R + + D + Sbjct: 349 AVRAALAVFAETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFL 403 >gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] Length = 453 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 148/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R I+ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 19 GADRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVERE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G Sbjct: 71 -LDADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHIGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ + + Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLRAGAVAIVNLESHGGDLWKTDLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + D + G+ V NAL AA L + Sbjct: 236 VKTFSTTDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + L L V GR + I Y + +++ + + ++ R Sbjct: 296 EMGASLAEIRHGLAHLAKVKGRVDLTHLRQDITLIDDSYNASVPAMKAAVDLLGGFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A + ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT 390 >gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 465 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 168/479 (35%), Gaps = 45/479 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ +KD +L L + I +S+DSR I+ G FV +VGNK D H ++ A Sbjct: 2 DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAF 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 G +A VVS Y+ + P VV +T A ++AVTG+ Sbjct: 62 DLGIQAAVVSEKYN-----GLVPIGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSV 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ I G G ++N + P + LS + Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRGN--------ENNDIGVPKTL-----LSGSETDAAFV 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G + TN+G+ HI +++ AK + L P Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301 I + D K ++++ RV G+ ++ + + + Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNFI 283 Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F PL G N L+A + +G+ + + + + R G Sbjct: 284 LFEGRKFKLPLEGRHNAMNFLLALTVATELGLSIKKLDQLKINMPIGRNRL-----VDCG 338 Query: 356 GRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410 + +D Y + S+ L+ + + GR V G G + K A++L Sbjct: 339 QYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIELG 397 Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E+ I+ I +P N +A + + L+ D +++ KG Sbjct: 398 LTGIVFVSC---GEESNIIKKTIKE-LPNHDVVSNPKDAAMSLLPWLSPGDNILI--KG 450 >gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter atlanticus HTCC2559] Length = 422 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 144/393 (36%), Gaps = 36/393 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +S+D+R I+ IF A+ G+ +G+ + AI QGA +V+ + + Sbjct: 11 TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEE--------QFKKDD 62 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VD+ + L AS I+++TG++GK++ + + + + +G Sbjct: 63 RYILVDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNL 122 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L S + V + A+ G + + + G T Sbjct: 123 NNH----------IGVPLTLL---SMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYIT 169 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ +++ K L++ L + + ++DA ++ K + Sbjct: 170 NFGKAHLEGFGSEEGVVIGKSELYKHLKSHDKIVFVNSNDAKQVDLTK----------GM 219 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + V + + + L G + N A + I Sbjct: 220 KTFTFGLKQSDVWVSFKNVNPLVEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDK 279 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 ++E +E R + + ++ + Y +S+++ L+N++ + + G Sbjct: 280 HIVEAVENYVPSNNRSQIIKKDNL-TILLDAYNANPSSMKVALENLQALNDTPKYAILGD 338 Query: 391 G---GDRDQGKRPIMGKIALD-LADIAIVTDDN 419 G + + + K+A D ++ +N Sbjct: 339 MFELGASAKKEHMSIAKLAASIHLDGVLLVGEN 371 >gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 446 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 77/409 (18%), Positives = 141/409 (34%), Gaps = 36/409 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++ + + VS+D+R IQ +F+A+ G D + FI Sbjct: 2 MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A QGA VV+ +++ P++ V +T + L A + P + V Sbjct: 53 AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + ++ G + P Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + K TN G H++ + + AK +FE L Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A+I DD +++ + AH+ + + + + + Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G V NAL AA A + + + LE + V GR I Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y S+ + + G ++V G G + +GK A Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377 >gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 69/473 (14%), Positives = 150/473 (31%), Gaps = 44/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E +W + I V DSR I++G +F+ +V DGH ++ Sbjct: 3 MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + +D S I + +L V +T L K ++A+ Sbjct: 55 EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + + P Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + +G L + + + + + + L + Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ K + + + K ++ + Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DF + G + V+NAL A + I + + L + R E++ + + Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415 Y +++ +L + + G+ I+V G G++ + + D D + Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIDSVYL 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464 E + ++ + + + T L D++++ Sbjct: 393 C-----GELMGYLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMPDDIVLL 440 >gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis Bt4] Length = 468 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS +T N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A L + A+ ADDAY+ A + Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDFA 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + G+ V + + ++ I D GE NAL A +A G+ Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A V LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1342] Length = 474 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 169/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVINEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ + +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYVPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arcanobacterium haemolyticum DSM 20595] Length = 470 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 154/460 (33%), Gaps = 32/460 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + + + +++D+R I G +FVAI G + DG+ F A+ GA A++ + + Sbjct: 15 GTISTEPADSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGAVAVLTADPAA 74 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQ 135 A ++ VD+ L A + + K V G +G + Sbjct: 75 ACATGAAPE---RVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDL 131 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G I P + ++ P+ + S + + A G Sbjct: 132 LAHLLGQRGPIIAPPGSFNNELGM-------PLTVL---RADESTSTLVLEMGADHIGNL 181 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + + + R H+ + AK L E + ++ DD ++ Sbjct: 182 AYLTGIVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEG-TREGGVVVLNYDDERVRD 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYN 314 + K A + G + V + + + L G V N Sbjct: 241 MAKLAPGKVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGAHHVAN 300 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 AL AA + + GI+ L + + P R + N I Y +S++ L Sbjct: 301 ALAAATVALVCGIELDDCARLLTEANAGSPHRMDVWERNGT-TIIDDSYNANPDSMKAGL 359 Query: 374 KNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKI 428 + + T R I V G G+ + + +G++ L D I P + Sbjct: 360 TALAHLGTHRRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGP---GLSPTIL 416 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 A G E N EA + +L + DV+++ KG Sbjct: 417 TA--RQGGVEVHETLNVAEATQLLTGLLAEGDVVLL--KG 452 >gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] Length = 448 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 74/440 (16%), Positives = 153/440 (34%), Gaps = 47/440 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ ++ + + + S +S++I +F+ + G++ DGH F Sbjct: 1 MNL------WLSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENIL 118 + +A+ GA + + + P + V ++ L A K + ++ Sbjct: 55 VKEALQNGAISFISQKDFEDI--------KVPYIKVQDSLLALQSLACYARRKLNDLKVV 106 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 VTG+ GK+S ++ + R + G + Sbjct: 107 GVTGSVGKTSTKEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDD------------ 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + S+ G K G TN+G HI+ +++ F AK + + + Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I +D + + + + ++++ Q S E Sbjct: 214 ESGILIINSDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + +YN+L A + + +D LV E + + + RFE + S + Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILEVDRQLVKEAIRQKERLKRRFEVIKKGSI-TVV 325 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 Y +++S+ + +I G+ I+V G G+ + + +G+ I D+ I Sbjct: 326 DDTYNASTHSMLSAIDSICEF-EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384 Query: 415 VTDDNPRSEDPEKIRAEIIH 434 T +D I E Sbjct: 385 CT-----GKDAIYIFDEAKK 399 >gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 452 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 144/398 (36%), Gaps = 29/398 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +L Q + I VS +S + +FVAIV DGH FIP AIA GA Sbjct: 3 KSLKQLATQAG-LEYIGEDVSIQTVSINSNEVNQDALFVAIV-ANRDGHEFIPSAIANGA 60 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A++VS + N P +V +NT K L A I+++TG+ GK++ Sbjct: 61 KALLVSKKQDI---------NIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + + G L TP + A + Sbjct: 112 VKEMIVTL--LGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFA------------VIETG 157 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + + I+ TN+G H++ +T K L + L I Sbjct: 158 TSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDG--VCIVN 215 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D + S+ Q I + V I + K++ + P G Sbjct: 216 LDDERIPAYADKLDCKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSYQLPNIG 275 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + + N+++A +A G++ L++ + + GRF N + + Y ++ + Sbjct: 276 KHNLSNSMLAIASVVAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGA 335 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK 404 ++ + ++ ++I + GD + MG+ Sbjct: 336 VQAAIADLAEFDGKKVIAITSMRELGDEGENYHRKMGQ 373 >gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 460 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ I + + + + + ++N V D+R + G +F+ + G DGH FI Sbjct: 1 MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + D + + P LVVD+ + K ++AV Sbjct: 58 ENAIKGGAVATLW-----ASDHTNRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + SG + + + + Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G ++ T +G HI++ T+ +AKM + L Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D +++RA ++ G + D Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ V NAL A + I +++ L + R E++ N + Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403 Y + +L GR IVV G GD+ + Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSSQMHASLA 382 >gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 464 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 64/419 (15%), Positives = 142/419 (33%), Gaps = 26/419 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 + +I + +I L ++ + + I V DSR + G +++ I G +GH ++ Sbjct: 1 MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA+A++ +++V++T L A + ++ + Sbjct: 61 QQAIEHGAKAVLWERK------EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + ++ +G + P+ L S + Sbjct: 115 TGSNGKTSTKDILASVLAKHFITQKTLGNFN----------NEIGVPLTLL---SLSENC 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + + ++ +N+G H++ T + AK+ + E L Sbjct: 162 EAAVVEMGMENLNELSFLTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGLNEH 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +++ ++ + G + + + + S+ D+ Sbjct: 222 GLLIYNGDQQLLRDAAVEKQIPGYIKIRTFGKEAHNDVIVSH-VHQLEDGLRFSINEDDW 280 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + + G+ Q NA A A+G+ + E + R E V N + Sbjct: 281 VYHLDMIGKHQAMNATAAWIAAKALGLSEEEIAEGFASVEKTGLRNELVKVNQC-LILND 339 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S + + + V G G+ +GK ++T Sbjct: 340 SYKSNPQSALAAVDTMEEFDIPYKLAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLT 398 >gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 442 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 152/405 (37%), Gaps = 40/405 (9%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I Q+ Q + + VS DSR +++G +FVA+V DGH ++ QA+ +GA A++V Sbjct: 8 IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + I S P ++V +T L + ++A+TG++GK++ Sbjct: 67 DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA- 118 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 S +G ++ P+ L V V + G Sbjct: 119 ---------SAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDD---TEVLVVELGMDRPGQ 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + T +G HI++ +T++ AK+ + + L + + + Y + + Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLLTN 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +K+ + + I++ TI ++ F PL G + + N Sbjct: 227 AQVKQ--------------NVQTFGQDIKDINSSSSKTI-FTYQNTRFAIPLLGRYNIMN 271 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A I + I+ E L+ + R E + T+ I Y ++ +L Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331 Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 ++ I + VV G G++ + + + D + Sbjct: 332 TLKIIPATHKYVVLGDMLELGEQAASLHACLAETVINANVDGVYL 376 >gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 74/436 (16%), Positives = 148/436 (33%), Gaps = 39/436 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + DSR + AG +F+ + G K DG+ F+ +A+++GA + A+ + Sbjct: 17 RNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFD----------DQ 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L VD+T + L A + K N + +TG++GK++ + G G Sbjct: 67 RVLRVDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGN 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +T P+ L + L S S+ G + + ++ Sbjct: 127 LNTE----------IGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVL 176 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H+ + K+ +F+ + S A++ D + + + VL Sbjct: 177 LNVGSAHVGNFKDIDELLQEKLSIFKS--KRLSRAVLGGCDE---RLREFSKGLPVEVLL 231 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + + +G F L + Q+ + A + +G++ Sbjct: 232 FGKEDVDFSIVDFAYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLVGVEE 291 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387 V + KL RF Y + S E + +I + S R I V Sbjct: 292 PSVFLNDYKLPFS-DRFTVSILKGITVISDF-YNSSLESWESAILSIEKLRSSRKIAVAG 349 Query: 388 -FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G ++ +G++ + + T D I A + + + Sbjct: 350 SILEQGREEKRTHERLGELLSKFDETVLFTRD-------MAINAA-SKNVKPALVSDSEE 401 Query: 447 EAIRTAIEMLNKQDVL 462 E + D++ Sbjct: 402 EIAAWLHRNVRSGDLV 417 >gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0630] Length = 474 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 457 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 459 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 141/405 (34%), Gaps = 32/405 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I ++ E+ L I ++ + KI +S DSR I+ +++ IVG K DG +FI + Sbjct: 1 MIERNLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 GA A ++ +++ + P + V +T+K L A + I+A+TG+ Sbjct: 61 ENSGAVAFLID-----ENYKIPKSISIPFVKVSDTKKALQDLARAYRDELDIKIIAITGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + + G + P+ L V Sbjct: 116 NGKTTSKNLIHSVLSEKYKVEKTQGNLN----------NEIGVPLTLLDFSDKTQIGVVE 165 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + L + K TN+G H+ ++++ AK+ + E L + Sbjct: 166 MGTEDFGEISLLTNIA---KPDMAMITNIGDAHLLKLKSREGIAKAKLEILEGLKADGTF 222 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 E++K+ + GK + ++ D+ Sbjct: 223 IYN-----GDDEILKKVLPSYTIKQKTISYGKEDGVNFKVYPKEFSSTYTKFSYENEDYK 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL G QVYN +A + + + L K+ R E G I D Sbjct: 278 VPLLGTHQVYNGALAVLIGKLFNLSYEEIDNGLAKVSNNANRNEL--IERNGFDILDDAY 335 Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIMG 403 ++ + G IVV G GD ++ G Sbjct: 336 KSNPQSLKQGLELAGFLDGYLNKIVVLGDMLELGDGEKNLHYKSG 380 >gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] Length = 453 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 152/414 (36%), Gaps = 31/414 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMTQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +++ GD +G+ A ++T K+ +++ G Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKYAKVISDLCQG 404 >gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile 630] gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Clostridium difficile] Length = 457 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 75/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + + ++++ DSR A FVAIVG DGH F+ A G + + Sbjct: 11 LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + S+ ++ V +T L + K + VTG+ GK++ + Sbjct: 69 ---KNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + P+ L + + S Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ +D + +N+G H++ +Q+ A + + I+ DD + Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ H + ++ + + + GK + P GE +Y Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A + + + I + + L+ R + + I Y + +S++ L Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349 Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 K + R+ + + G + G R ++GK +++ DI I +N E Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ NR + E++ D ++V KG Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442 >gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] Length = 450 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 41/445 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NE+ +S+ I+ G +F+A+ GNK DGH +I AI QGA A++VS + D + Sbjct: 23 NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIADKNK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ K L A +A+TG+ GK+S ++ + Q L+ G Sbjct: 76 -IILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNHLGL-------------LINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A E K+ A+I +D ++ + Sbjct: 182 NISEAHLEFFNSLEDIAEA-KCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHN 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + L + + + + P + N + + D Sbjct: 241 FDKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLN 300 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 +L+ + + GR + I Y + S++ L+ ++ + + + G Sbjct: 301 KAAGYLKNIPMTKGR-GKIINIGNSRIICDYYNASPTSMKAALEYLKQMPATNKTAIIGE 359 Query: 391 G----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKG 443 + ++ + ++ I + N + PEKI I I Sbjct: 360 MLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIAST 419 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 N ++ +++++ KG Sbjct: 420 N---------DLFKNDELILI--KG 433 >gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 156/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+A+GA ++V + P +VVDNT L+ A+ + +LA+ Sbjct: 55 AEAVARGASGVLVER--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T + ++N + P + A + ++ Sbjct: 107 TGSNGKTSVKALLLSILTEAG---RVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + + + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 A+I ADDA+ ++ + + V G I +++ Q T+ Sbjct: 218 GGVAVINADDAFGMWFEQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + V GR + T G Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARAVAGR-QIAQTLPNGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAQGEGWLVLGDMRE 373 >gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophobacter fumaroxidans MPOB] gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 463 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 76/441 (17%), Positives = 148/441 (33%), Gaps = 38/441 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +S+D+R ++ F+A+ G + DGH FI A+ +GA +VV S + A Sbjct: 23 LPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKGAAVVVV---ASGRGEGAVRA 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + ++ VD+T L A ++ + +TG++GK+S + I + Sbjct: 80 GSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTKELLAAILEHRHGILKNR 139 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + + L T P + + + + G ++ G Sbjct: 140 GNLN--NQIGVPLTLLTMDP-----------THEAAVIEMGINVPGEMARLVEIAGPTLG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+ H++ + K RL++ L E A++ DD + KR Sbjct: 187 LITNIQPAHLEGLGSLDGILKEKGRLWDA-LDAEGIAVVNLDDQRLRAYSKRLAARTVTC 245 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + ++ + + + + + + + G V NAL AA A+G Sbjct: 246 SVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAAAWAMGE 305 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIV 386 + L V R + I Y S+ ++ + G+ I Sbjct: 306 PGEAISAGLAAYRPVGQRMQIRHMEDGRVLIDDTYNANPESMLAAVRAALAVCRGKPCIA 365 Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEK 442 V G G +G+ + ++T E +I + G+ Sbjct: 366 VLGEMRELGADSAALHRELGRRIGAMGLSGLITL----GELAARIGEGAVEAGMKPA--- 418 Query: 443 GNRIEAIRTAIEMLNKQDVLV 463 A D +V Sbjct: 419 ---------ACRHAKSHDQVV 430 >gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 146 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 25/158 (15%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + + +I + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + + +TGT+GK++ + +++I G + +G Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNG 140 >gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 470 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 145/393 (36%), Gaps = 20/393 (5%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 I+ V +D+R I+ G +FVA+ G + D + + +A A+GA A++ + + Sbjct: 16 GATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEAFAKGAAAVLCHAGLT 75 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + A P + V+N++ L+ A+ + ++AVTG++GK++V + I Sbjct: 76 ASAYPA----GLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKTTVTQMIASILH 131 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ P+ L + + + V + + G Sbjct: 132 AHAPDGAALATVGNFNNDI-------GVPLTLLRMRAQHR---IAVVELGMNHPGEIAVL 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H+++ T +A LP+ A+ ADD Y+ + Sbjct: 182 AAMAQPTVALVNNAQREHLEFMHTIEAVARENG-SVLSSLPETGTAVFPADDDYAPLWRE 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + G G ++ QV + + + G V N+L A Sbjct: 241 LSAGRVVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSLAA 300 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A +A G+ + V LE V GR + + Y +S+ + Sbjct: 301 AACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAAIDV 360 Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + + R++V+ G G++ G+ A Sbjct: 361 LADLPGPRLLVMGDMGEVGEQGPAFHAEAGRYA 393 >gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] Length = 353 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 20/277 (7%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A G ++ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT GK++ F I + + T+ + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 TH+ +E SS HR+ G+ G F N+ DHI + + LL Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGP---IEHPSFEDYFYHKRLLM 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 + S A+I D V+K Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQ 270 >gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] Length = 457 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 83/467 (17%), Positives = 164/467 (35%), Gaps = 32/467 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L ++ + + + R+ V DSR ++ ++FVAI G + H FI Sbjct: 1 MK--NLTLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P I +GA +V ++ P ++V++T + L A ++ + Sbjct: 59 PDTIEKGALCVVSHEDLG--------DTDFPYILVESTGQALLDIAKLYRDSFDVTVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + +G + +T + + Sbjct: 111 TGSVGKTSTKEMIASVVSQKYKVHKTLGNFN----NEWGLPITIFEMDESHEVVILEMGV 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 SS TN+G H+++ +T++ K ++ +++ Sbjct: 167 NHFGEMRRLSSVA---------SPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNG 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S + DD SK + + Q + + + + +G+ F Sbjct: 218 GSIILNGDDDLLSKMGPVKGVTPVLFGTNEDCQCYASGIVPMGLKGTACTIHL-PDGEAF 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D L P PG V NAL A + A+G+ + + +E +PGR + T S Sbjct: 277 DCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIISTGSLMILDDC 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S + + + + GR + V G G+ ++ +G+ A + Sbjct: 337 -YNANPVSTKAAIDVL-DMAIGRKVAVLGNMGELGNNEKELHREVGEYAAKHGIDVVCGI 394 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + E E F K + + + I + D ++V Sbjct: 395 GDLAKEITESAAKGASTETHWFAAKQDFLAEMHHII---KEGDNVLV 438 >gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL N1-067] Length = 316 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ + + L SI +R+ I V D+R I+ G +FV VGN DGH F+ Sbjct: 1 MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA A ++ P+++V++T L A + + ++A+ Sbjct: 59 GQAREMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + S + G + LT P +A ++ + Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHR 171 Query: 181 G 181 Sbjct: 172 H 172 >gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] Length = 474 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 171/481 (35%), Gaps = 53/481 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--------- 410 Y ++ ++L + + G+ I V G + + +A LA Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ++A + D + P I EK IEA++ + +D++V+ K Sbjct: 409 YGSEMAYLADKLQETYTPANI------HSFKKEEKNELIEAVKKVL---QPEDMVVL--K 457 Query: 468 G 468 G Sbjct: 458 G 458 >gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 457 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 81/481 (16%), Positives = 171/481 (35%), Gaps = 53/481 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--------- 410 Y ++ ++L + + G+ I V G + + +A LA Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 ++A + D + P I EK IEA++ + +D++V+ K Sbjct: 392 YGSEMAYLADKLQETYTPANI------HSFKKEEKNELIEAVKKVL---QPEDMVVL--K 440 Query: 468 G 468 G Sbjct: 441 G 441 >gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL S4-171] Length = 309 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ + + L SI +R+ I V D+R I+ G +FV VGN DGH F+ Sbjct: 1 MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA GA A ++ P+++V++T L A + + ++A+ Sbjct: 59 GQAREMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + S + G + LT P +A ++ + Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHR 171 Query: 181 G 181 Sbjct: 172 H 172 >gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis TXDOH] Length = 468 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS +T N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGERARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A L + A+ ADDAY+ A + Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRLVDFA 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + G+ V + + ++ I D GE NAL A +A G+ Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A V LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] Length = 452 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 148/466 (31%), Gaps = 43/466 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+++ + E ++ VS+D+R + G +FVA+ G + DGH +I Sbjct: 1 MTLKEIAAAIGAD----------GTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA V P++ V NT++ L A + + + + Sbjct: 51 TAALRGGAACAVAHERRDYGAG--------PVMYVKNTQRALMDLARAYRARFDIHCVGI 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + G + + T Sbjct: 103 TGSVGKTTTKDMIAAAVSAGFQTLKTEGNLNNEIGLPKTLLGLT-------------RGH 149 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G D + G TN+G HI+ +++ AK+ L + L Sbjct: 150 EAAVVEMGMQGFGEIAALADVARPTLGVITNIGVSHIEQLGSRENIMKAKLELADALPDG 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + DD K + R R V +H + + T+ G Sbjct: 210 APLFLCGDDDLLKKVSIPR---LDVRFYGVENPACALHAADIREADAQTAFTLQYPGGQV 266 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P G V NA+ A G+ +A+GI + L R V S Sbjct: 267 GATIPCIGLHNVRNAVAACGVGMALGIPAEKCAAALAAYVPSGMRQRVVHWGSVTVVEDC 326 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + +S+ L + + GR I V G G Q +G+ A ++ Sbjct: 327 -YNASPDSMRAALTTLSAMRCAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLLL- 384 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 D G ++ + + L D++ Sbjct: 385 ---AYGGDACYYSQGAKEGGVESETFSDKADLLARLRGALGPGDIV 427 >gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arsenophonus nasoniae] Length = 452 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 169/450 (37%), Gaps = 46/450 (10%) Query: 31 NEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 N V+++SR I+ +F+A+ G DGH F QA GA A++V ++ Sbjct: 23 NAVTTNSRQRPIK--GLFIALKGKHFDGHHFAEQATIAGASALLVERPLTI--------- 71 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V++TR + A+ + + ++ +TG+SGK+SV V I +SG++ F G Sbjct: 72 HCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEG 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + P+ L + + + + A+ G + + ++ + Sbjct: 132 NFN----------NDIGVPLTLFRLTAE---HEYAVIEMGANHIGEIAYTTNMVRPDSVL 178 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRV 267 NL H++ + AK +F+ L + + I A D + + + R Sbjct: 179 VNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQTLWRF 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 Q + + + + + LPG+ + NAL A+ L +++G Sbjct: 239 SLTKQQQADFYAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMSVGA 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V L + V GR + + Y + S+ + + RI+VV Sbjct: 299 TLEQVSLGLAHVQPVSGRLYPIYLAPGKLILDDTYNANTGSMIAAADVLSQMPGYRILVV 358 Query: 388 --FGCGGDRDQGKRPIMG---------KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 G GD+ + +G ++ I++ + E + I I Sbjct: 359 GDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQQSGCGEHFASKKELIAKLI 418 Query: 437 P--------GFIEKGNRIEAIRTAIEMLNK 458 P + KG+R A+ + L + Sbjct: 419 PLIKEHETVSVLVKGSRSTAMEEVVHALQE 448 >gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] Length = 427 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 144/384 (37%), Gaps = 25/384 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R + G +FVA+ G + DGH F AIA GA A++VS ++ P Sbjct: 1 MTIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVEA---------PQ 51 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 52 LVVKDTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNN 111 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + A+ G + D + + NL Sbjct: 112 DIGVPLTLLRLTPE-------------YDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + AK +F L + I + + + R G Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWRFSPHGA 218 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + V T+ PLPG + NAL AA L +++G A V Sbjct: 219 EDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390 + L +L VPGR + ++ + Y S+ + + + R++VV G Sbjct: 279 RQGLTQLQAVPGRLFPIELSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMGE 338 Query: 391 GGDRDQGKRPIMGKIALD-LADIA 413 G+ +G A D Sbjct: 339 LGETAVDCHRQVGDAAKQAGVDKV 362 >gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] Length = 457 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 76/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + + ++++ DSR A FVAIVG DGH F+ A G + + Sbjct: 11 LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + S+ ++ V +T L + K + VTG+ GK++ + Sbjct: 69 ---KNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + P+ L + + S Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLSKE---HECAVIEMGMSGFN 172 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ +D + +N+G H++ +Q+ A + + I+ DD + Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDEANTLIVNGDDKFL 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ H + I+ + + + GK + P GE +Y Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A + + + I + + L+ R + + I Y + +S++ L Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349 Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 K + R+ + + G + G R ++GK +++ DI I +N E Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ NR + E++ D ++V KG Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442 >gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 149/405 (36%), Gaps = 32/405 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I ++ ++ L + +++ KI+ VS+DSR IQ +++ +VG DG LF+ + Sbjct: 1 MIERNLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA A ++ Y +++ + P + VD+T K L A + ++ +TG+ Sbjct: 61 EDKGASAFLIDRDYEIKN-----NISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + ++ + IG +N + P I LS + Sbjct: 116 NGKTTTKDLLYEVLSTKYKTQKTIGNL--------NNEIGVPKTI-----LSLNEDTEIA 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + G + TN+G H+ ++++ A E L + Sbjct: 163 VVELGTDKFGDISLTSNIALPDIAIITNIGDSHLHNLKSKEGILKA-KMEIVEGLSDDGI 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I DD K+ + + +K++ + +S + Sbjct: 222 FIYNGDDETMKKEIDSYKVDQKIISFGLEDDNDFVVKEIPSTP----AKVSFSHDGETYD 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 PL G +YN + +G+D+ V L K+ R G + D Y Sbjct: 278 IPLLGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANNRS--SMIELDGFDVLDDSY 335 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403 SL L + + IVV G GD++ +G Sbjct: 336 KSNPQSLRSGLATCKLLDGYNNKIVVLGDMLELGDKEDELHYEVG 380 >gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 460 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 78/478 (16%), Positives = 173/478 (36%), Gaps = 51/478 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L K E+++ + ++ V DS+ I+ G +FV I+ K DGH ++ + Sbjct: 7 LIQLHLKKLEEVVDGEG-LQESFHHLEMQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKE 64 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AI GA A + +Y PI+ VD+T L A ++ +TG Sbjct: 65 AIDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITG 118 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++V + I + G ++ P+ + + Sbjct: 119 SNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRD---TEF 165 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G ++ + T +G+ H++ +++ AK+ + + L + Sbjct: 166 LILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGL 225 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + ++ R +N + L ++ V + + Sbjct: 226 LLYN-----GDETLLSRKNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQY 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G+ + N +V + + + + + L ++++ RF+F+ + I + Sbjct: 281 DVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIINDAW 340 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGD---------RDQGKRP------------ 400 + +S++ ++ ++ + + I+V G + R+ GK Sbjct: 341 NASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYG 400 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455 M +I + A T + KI E++ I + KG+R A+ ++ Sbjct: 401 EMAEIVAEEAMKTYATGQVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQN 458 >gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 455 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 33/408 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + + + +R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 Y A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G + + P + + G Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPD------------HHWAAVLEMGMRGRGQ 177 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + TN+G HI + + L AI+ AD+ Sbjct: 178 IAELARIAQPNIAVITNVGTAHIGLLGS-EQAIAEAKCELLAQLSGTGLAILNADNHRLI 236 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +R + CR + L + + + F PLPG N Sbjct: 237 ATAQRLNLPRCRTYGLQNGDLQGQLIDLETLV----------VEGQRFRLPLPGAHNALN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L + +G+D + L R + + + Y S+ L+ Sbjct: 287 FLAGLAIAQELGLDWEAFRDLSVTLPQGRAR--RIELSPDIVLLDETYNAGLESMLAALQ 344 Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418 + R I V G GD + +G+ A L D ++ D Sbjct: 345 LLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392 >gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 440 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 113/348 (32%), Gaps = 39/348 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL + + Q + V DSR ++AG +FV + G + DGH +I Sbjct: 1 MK--DLKTDIIANWVKGSVLGSTQ-----VQGVKVDSRAVEAGDLFVCLKGARVDGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 I +GA A++V + ++VD+T L LFA + + Sbjct: 54 EDVIGKGAVAVLVDHKID--------NLDVCQIIVDDTMAALQLFAKAYRDTLNATFIGI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + I R G S +T Sbjct: 106 TGSNGKTSTKDILFSILSRVGNSIATYKNQNT-------------EIGTYLNLFRMNDDT 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + G + I+ AG +L H+ + + + KMR+F+ + K Sbjct: 153 EFGIFEMGLDYVGDVAVMAECIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHK 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + G + V + + IS + Sbjct: 213 DLSFYQG-----------DFEQYRSISHGEHTFGFNEDNEWVVSDVSSNNHGISFKLDGV 261 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + L G Q N L +GID A++ E L + + R E Sbjct: 262 AYSSNLLGNHQASNCAGVIALLSKLGIDDAVIREGLNHVALTSLRTEL 309 >gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] Length = 474 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 18 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 73 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458 >gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 457 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + + + + + + QW + + + DSR I G +FV + G DGH FI Sbjct: 1 MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A G +A P+L V + + A+ K N++AV Sbjct: 56 ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + ++ G + I L + ++ + Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + H + L + + + + + +A + L K Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + +D+ + ++++ + L+ + K+Q + + Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+PG + V NAL+A G+ + + + + L + R E++ + + Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + + G+ I V G G M + A + Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + +K++ +K + E I ++L +D++V+ KG Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441 >gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] Length = 510 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 84/495 (16%), Positives = 167/495 (33%), Gaps = 55/495 (11%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L +++ ++ + + + V DSR I +G +F+A+ G + DGH F A Sbjct: 3 ELTLAQIADIVGG-TLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAATA 61 Query: 64 IAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDN--------TRKFLSLFASRLYGKH 113 I +GA A++ + + + ++ ++ +++ L A+ Sbjct: 62 IEKGAVAVLGARPVGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYCTKSL 121 Query: 114 PE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 ++ VTG++GK+S + + + G + G + T Sbjct: 122 AADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRAT------ 175 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 +S + + A G G N+G H+ +++ A Sbjct: 176 -------ASTKFLVLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSRE----AI 224 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQ 289 R EL+ + +A V A RV+ G + V + + Sbjct: 225 ARAKGELVEALPVDGVAVLNADDAAVAAMASRTAARVVFYGTAEAQVRATDVVLDAHARA 284 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEF 348 T+ G + GE QV+NAL +A + + G +A V E L P R + Sbjct: 285 AFTLHTAGGTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGAASPRRMDV 344 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 T+ + Y +++ L+++ ++ RD+ + + + Sbjct: 345 FTTDGGVTVVNDTYNANPDAMRAALRSLVLMSEHDEAG--ERLPGRDRRRTFAVLGEMGE 402 Query: 409 LADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------------------FIEKGNRIEAI 449 L + +I+ D R I + I G I R EA+ Sbjct: 403 LGEESILEHDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAEAV 462 Query: 450 RTAIEMLNKQDVLVV 464 L D+++V Sbjct: 463 ERLRAELRPGDLVLV 477 >gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] Length = 453 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + +T + + A+ G + +K Sbjct: 130 YTQGNFNNDIGVPLTLLRSTTE-------------DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 478 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 162/484 (33%), Gaps = 48/484 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 L D++ + + Q+ + + E DSR ++ G +F+AI G K DGH FI Sbjct: 4 LADILQQS-QDAQAQVQLVSTTTPDPVMTFTEAHHDSRQVKPGDLFIAIKGAKVDGHAFI 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119 +A GA A + + + +VV + L A + PE + Sbjct: 63 HKAAQAGASAALCTHPVE------DVPEGFLQIVVPDVVAALHATARARTRRQPETTYIG 116 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK+S + + +R + + ++ ++ T + + L Sbjct: 117 ITGSNGKTSTKEAIAAVLERH---APTLKTLASYNTEIGYPL--TLLRLEPQHRYAVLEM 171 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 ++ S TN+G H+ Y +Q+ A ++L Sbjct: 172 GAQWVGELKMLSGI--------TCPDWSVITNVGASHLGYFGSQEQVVIA-KSELVQVLS 222 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A++ DD + + + G K + +S + ++ Sbjct: 223 PDGIALLNYDDPNVRAMNTKTSAR-VIYYGQGEGADVRASKPGGDQLFGRSFVLSYQDQE 281 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +PGE + AL AA + A G+ ++ + LE L R E + I Sbjct: 282 VPVQLHIPGEHGIAIALAAAAVGCAAGLPLDVIRQALEDLKPAKRRGEIKPGPNGSTLID 341 Query: 360 VDYAHTSNSLEMILKNIRT---ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 Y S+ I + + G+ V G G + + G L D Sbjct: 342 DSYNANRQSILAIAQAMHGSTLAPHGKRWAVLGDILELGQYAREEHRTCGAALASLVDYI 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRIEAIRTAIEMLNKQD 460 + + R I I G+P + ++ A E + D Sbjct: 402 VAIGEQARF----FIEGAIEAGLPQDHAYFYSADLENSAEVEASKRAAADLLKEQVRGDD 457 Query: 461 VLVV 464 ++++ Sbjct: 458 LVLI 461 >gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter lovleyi SZ] Length = 462 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 87/464 (18%), Positives = 161/464 (34%), Gaps = 33/464 (7%) Query: 12 PELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 PE + ++ + E ++ +S+DSR I+ G +F+ + G++ DGH ++ + + Sbjct: 4 PEQLTTITHGRLIGPETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTERRIQV 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 + + ++ S + V +T + L A+ + ++ VTG++GK++ Sbjct: 64 SLCNESWLQHQQPPATLS---CIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTTK 120 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + I + G + I L + L L + V Sbjct: 121 EMLAAILDQVDQGLKTSGNLNNQ--------------IGLPQMLFQLKPEHCWAVLEMGM 166 Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S + RL I G N H+ + +A AK L + + A++ AD Sbjct: 167 SEPGEIDRLAEIACPSIGIVLNAFPAHLQSMGSVEAVAQAKGEL-LQRIQDGGLAVVNAD 225 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPG 308 D + N R S G + + + V AI + Q + + G Sbjct: 226 DP---RIASLHQNPSARRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALG 282 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + +YNAL AA + + + E LE GRF ++ I Y S Sbjct: 283 QHNIYNALAAAAGLLELVG-LETIAEGLEAFVPYTGRFHLETLSNNRLLIDDSYNANPAS 341 Query: 369 LEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 L ++ I R V G + +G A +AD + +++ Sbjct: 342 CAAALATLQGIKGNRRAFVALGDMLELGRDELELHRQLGIQAASVADRLYL--LGSLTKE 399 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 AE I + E R D++++ KG Sbjct: 400 TAGAAAEAGLASEAIISATSHEEIARDIHTHAGNGDLILL--KG 441 >gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychromonas ingrahamii 37] gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychromonas ingrahamii 37] Length = 489 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 80/423 (18%), Positives = 159/423 (37%), Gaps = 29/423 (6%) Query: 5 DLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++I E+ + I + E N +S+D+R I++G +F+A+ G + D H F+ + Sbjct: 13 NMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121 A+ QGA A+++ RS+ P ++V +TR L L AS + + A+T Sbjct: 73 AVQQGAGALLIDQK---------KRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAIT 123 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I G + + A + P+ L Sbjct: 124 GSNGKTTTKELLSAIL------CCHTGNNENVLATAGNFNNDIGLPLTLL---RLTEKTR 174 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V + A+ G + K N+ H++ + Q AK ++ L Sbjct: 175 YAVVELGANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTG 234 Query: 242 SPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + D S+ + + + I + + V ++ Sbjct: 235 IAVVNLDSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNR 294 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + L G V NAL AA + +A+G + + L + V GR + N Sbjct: 295 DPQAISIQLNLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLV 354 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413 I Y S+++ + ++ S ++V+ GD + + ++G+ A Sbjct: 355 TLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQT 414 Query: 414 IVT 416 ++T Sbjct: 415 LIT 417 >gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 423 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 125/363 (34%), Gaps = 27/363 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++D+R +F + G + +G+ F+P AI +GA +V + A Sbjct: 12 KGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA------ 65 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V++T K L A I+A+TG++GK++ + + +S + G Sbjct: 66 --ILVEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNF 123 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + TP + V + A+ G + G T Sbjct: 124 NNHLGVPLTLLRLTPE-------------TDIAIVEMGANHPGEIAQLCRIAEPDFGYIT 170 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N GR H++ + + AK L+ L D+ ++ N + Sbjct: 171 NFGRAHLEGFGSFEGVIQAKSELYNYLKKDNKRIFFCQDNEIQVRLLNGYSNTYSFSMEG 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + K+ + + + ++ + L G++ N A + + Sbjct: 231 NKKA------NLQLSLYKESLLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKE 284 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 ++ +E R +FV + Y +S+ ++ + I S I++ G Sbjct: 285 AIIHGIEGYIPTNNRSQFVEKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANKILILGD 344 Query: 391 GGD 393 + Sbjct: 345 MKE 347 >gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 475 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 147/442 (33%), Gaps = 33/442 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R + AG IFVA+VG DGH I +A+ GA ++ ++ + Sbjct: 37 TGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVE--------DA 88 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 IL+VD+T L+ A+ + ++AVTG+ GK++ ++ G + + + Sbjct: 89 RILLVDDTLSALNAMAAFARTRFAGRMIAVTGSVGKTTTKDMLRHALGACGPTHWAVASY 148 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA +S V ++ G ++ T Sbjct: 149 NNHWGV----------PLTLA---RLPASAMFCVCEVGMNNPGEIAPLAQMVRPDVAVIT 195 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H+ + + +A K L L + + + ++ + Sbjct: 196 TITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTGMAIFATQARNHGARLWTAG 255 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + G ++ + ++G PG NALVA A+G D A Sbjct: 256 THPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNALVALTAAYAVGADMA 315 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389 + L GR + + Y + S+ L + + + R I V G Sbjct: 316 CAVRGLADFRPGAGRGAITPILHGQASLLDESYNASVASIRATLDVLGQVPARRRIAVLG 375 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G + + + + AD+ N K +++ + Sbjct: 376 DMLELGAFARDQHESLLPDVREHADLVFCCGPN------MKYLFDLLPPSRRGAWAPDAA 429 Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468 + D ++V KG Sbjct: 430 TLAPQVRAAMRAGDAILV--KG 449 >gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] Length = 453 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida 3523] Length = 453 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 75/398 (18%), Positives = 141/398 (35%), Gaps = 29/398 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + I V+ +S ++ +FVAI+ DGH FIP AIA GA+A++VS L Sbjct: 14 LEYSGEDVSIQTVAINSNEVRQDCLFVAII-ANRDGHEFIPSAIANGAKAVLVSKKQDL- 71 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + P +V NT K L A I+++TG+ GK++V + + Sbjct: 72 --------DIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTL--LG 121 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L TP + A + + G + + Sbjct: 122 SKKVHFTQGNFNNYLGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADI----------- 170 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 I+ TN+G H++ +T K L + L + D Sbjct: 171 -IQPNIAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIV--NLDDERIPAYADK 227 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + S+ Q I + V I + K++ + P G+ + N+++A Sbjct: 228 LDCKKITCSMSNQDADILILDYQVTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIA 287 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A G + L++ + + GRF N + + Y ++ +++ ++++ Sbjct: 288 SVVAAGFEPNSFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEFD 347 Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 R+I + GD + MG+ D + Sbjct: 348 GKRVIAITSMRELGDEAENYHRKMGQWLNKANLDKIFL 385 >gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHTLGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 442 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 79/404 (19%), Positives = 150/404 (37%), Gaps = 48/404 (11%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I Q+ Q + + VS DSR +++G +FVA+V DGH ++ QA+ +GA A++V Sbjct: 8 IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + I S P ++V +T L + ++A+TG++GK++ Sbjct: 67 DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA- 118 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 S +G ++ P+ L V V + G Sbjct: 119 ---------SAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDD---TEVLVVELGMDRLGQ 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + + T +G HI++ +T++ AK+ + + L + + Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGT------------ 214 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + ++ + Q + + I++ TI ++ F PL G + + N Sbjct: 215 --LLIPYDEPLLTNAQVKQNVQTFGQDIKDINSSSSKTI-FTYQNTRFAIPLLGRYNIMN 271 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A I + I+ E L+ + R E + T+ I Y ++ +L Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD----LADIAI 414 ++ I + VV G +G+ A LA+ I Sbjct: 332 TLKIIPATHKYVVLGDML--------ELGEQAARLHACLAETVI 367 >gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] Length = 455 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 69/383 (18%), Positives = 134/383 (34%), Gaps = 29/383 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ E + + E+ VS+D+R I G +FV + G + +GH ++ AI Sbjct: 1 MLTSSLLESLTIS--TRLNETEQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIK 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA+A + Q A + + + VV +T L AS K ++ +TG++G Sbjct: 59 SGAQAALWE---EGQPVPAALPDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + G + G P+ + S + Sbjct: 116 KTTTKDILASLLSLEGETYKTQGN----------YNNHIGLPLTILAMPSTCK---YLIL 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S +G + RL I + + +A +E L Sbjct: 163 EMGMSGYG-EIERLSEIAKPDLAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSPAGFLF 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 I +D+ + ++ VG+ I ++ V A + Q I + F Sbjct: 222 IDSDEPLLDGWKQ------SSIMRVGFNHADILVENVAATVDGYQFDI----EGHHFELS 271 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+ V NA + G+ ++ + L ++ + R E + N + Y + Sbjct: 272 LLGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQISLTSMRLEKLTGNKGELIVNDAYNAS 331 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 S+ + ++ I S VV Sbjct: 332 PTSMIAAIDALKAIPSYEKRVVV 354 >gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] Length = 454 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 83/450 (18%), Positives = 164/450 (36%), Gaps = 34/450 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + + I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V Sbjct: 9 IADITGGELVGNDLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 T+ N P +VV +++ L A+ ++ +A+TG+ GK++V V Sbjct: 69 K---------TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q G F G + P+ L + + A+ G Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHVGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++ +K N+ H++ + A + L AI+ D Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGEA 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + S + + + I+ ++ + + G+ Sbjct: 226 KWDQVLADKKVITFSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHN 285 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA+ A+ + + G V L+ L+ V GR E + I Y + +++ Sbjct: 286 VANAIAASIIALQFGATLEEVRTGLKHLNKVKGRVEVEELSDNIKLIDDSYNASVPAMKA 345 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + R +++ G+ +G+ A ++T D + I Sbjct: 346 AVDLLSAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT----YGADAKVI- 400 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 +E+ GI F I+ I+ ++ + Sbjct: 401 SELCDGI-HFETHQEMIDYIKQHLDQAGPE 429 >gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] Length = 455 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 33/408 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + + + +R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 Y A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G + + P + + G Sbjct: 130 AMLAVRGPVLKPEANYNNEIGVPKTVLQIDPD------------HHWAAVLEMGMRGRGQ 177 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + TN+G HI + + L AI+ AD+ Sbjct: 178 IAELARIAQPNIAVITNVGTAHIGLLGS-EQAIAEAKCELLAQLSGTGLAILNADNHRLI 236 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +R + CR + L + + + F PLPG N Sbjct: 237 ATAQRLNLPRCRTYGLQNGDLQGQLIDLETLV----------VEGQRFRLPLPGAHNALN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L + +G+D + L R + + + Y S+ L+ Sbjct: 287 FLAGLAIAQELGLDWEAFRDLSVTLPQGRAR--RIELSPDIVLLDETYNAGLESMLAALQ 344 Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418 + R I V G GD + +G+ A L D ++ D Sbjct: 345 LLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392 >gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum MopnTet14] Length = 450 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 162/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G IF A+ GN+ GHLF+ QA GA A VV+ Y + Sbjct: 23 KKVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V + R+ L ++ +TG+ GK++ SF QQ+ Sbjct: 78 -GLQLFHVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 S + +++LT P I +A + + S G ++ L+ I+ G Sbjct: 133 ----FASPKSYNSQLTLPLSILMADGDEDFLL-----LEMGVSEPGNMKNLLEVIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + A + + L + ++ D ++ MK+ A Sbjct: 184 VITHIDVQHAMNFLDKGAKGIVEEKSLL--LERCGLQLLPKDSSWFPFFMKKNSTAEQFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + V IS D + P N LVA L + Sbjct: 242 FSMNNETSDFYYRAI----HSDGVLISAPDGDIELPVVFPYSPAYMNFLVAVALAWLTNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + L + RFE G R+ D Y + +S+ L + G+ + Sbjct: 298 PMDRLEQVSPSLILPSMRFEQQ--EYNGIRVINDAYNASPDSMLAALDAVPVPPEGGKRV 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + + A+ A + + E +R + Sbjct: 356 FILGHMAELGKYSNECHVAVARKAVTKAHVVVFI-----GEKWFPVRDVVRDANCQIEFY 410 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+ E + ++ + DV+++ KG Sbjct: 411 GSVNEIMHVVKSLVRQGDVVLL--KG 434 >gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 456 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 143/381 (37%), Gaps = 25/381 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ ++ DSR ++ G +FVAI G K DGH ++ A+ +GA A +V S Sbjct: 26 LEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVSSA------- 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L+V ++ L F + + ++ +TG++GK++ + + +I R+G Sbjct: 79 --LPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAGSVVATK 136 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + P+ LA + + + A G + + Sbjct: 137 GNQN----------NELGVPLTLADLNND---TEYAVLELGAGKPGDIARLCEMARPNIA 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H+ + A + LP + A+I ADD + RA C Sbjct: 184 ILLNVAPAHLANFGSLDAISKT-KGALLDDLPADGLAVINADDPRVFDWHVRASPTRCLT 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + + + + +D + +PG +YNAL AA + A+GI Sbjct: 243 FGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGI 302 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + E L + PGR + I Y ++ + + + R +V+ Sbjct: 303 SAITIREGLAAVKPAPGRGGVAVLSPDASLIDDTYNANPVAVRAAIDVLASEPGRRRLVL 362 Query: 388 FGC--GGDRDQGKRPIMGKIA 406 G ++ +G A Sbjct: 363 GAMLELGLDEEKLHAELGVYA 383 >gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] Length = 476 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 79/443 (17%), Positives = 135/443 (30%), Gaps = 29/443 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA+ G + DGH F+ + A GA VVS + ++ + + Sbjct: 34 VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV D+ K A+ + ++ + G++GK++ + + S G Sbjct: 94 LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGN--- 150 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + + + G + K G TN+ Sbjct: 151 -------YNNHLGVPLTLLQMRRD---TEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNI 200 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G +H+++ + +A+ LF L A + DD G Sbjct: 201 GHEHLEFFGSLDGVADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGA 260 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG---IDS 329 + + + T+ E + VAA A Sbjct: 261 GRAWWAEQIGADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAH 320 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 R E + Y +S+ + L + I GR I V Sbjct: 321 IAEGLGTLLPAKGWKRMELFEDGGI-VVLNDTYNANPDSVRLALDTLAAIECRGRRIAVL 379 Query: 389 GCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 G GD + +G+ L A +T + + I + G G Sbjct: 380 GDMLELGDNSAIEHESIGRYIRQLPLDACLTLGD----AAQLICEQ--AGGRCLRHFGTM 433 Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468 E E + D L+ KG Sbjct: 434 DELRGFLSEYVQPGDALLF--KG 454 >gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 453 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + +T + + A+ G + +K Sbjct: 130 YTQGNFNNDIGVPLTLLRSTTE-------------DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio parahaemolyticus 10329] Length = 454 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 83/428 (19%), Positives = 161/428 (37%), Gaps = 35/428 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I +++ + + I+ VS+D+R I G +FVA+VG + D H F QA GA A++V Sbjct: 9 IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + N P +VV +T+ L AS ++ +A+TG+ GK++V V Sbjct: 69 KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + P+ L + + A+ G Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252 + +K N+ H++ + + AK +++ L + DA Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDAL 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + V+ + ++ + IS + ++ + + G+ V Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A+ + + +G + L L+ V GR + +S I Y + +++ Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428 + + R +++ G+ +G+ A ++T D KI Sbjct: 347 VDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399 Query: 429 RAEIIHGI 436 +E+ HGI Sbjct: 400 ISELCHGI 407 >gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] Length = 453 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V Sbjct: 19 GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G Sbjct: 71 -LEADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + G + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + + AI+ D + + Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVSLDSNGGEHWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + D + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + L L V GR + I Y + +++ + + + ++ R Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 503 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 158/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+A+GA ++V + P +VVDNT L+ A+ + +LA+ Sbjct: 55 TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + + + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + V G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ + L + V GR + T G Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 465 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 80/455 (17%), Positives = 143/455 (31%), Gaps = 38/455 (8%) Query: 25 WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + V +DSR AG ++VA G DGH F+ AI +GA A++ Sbjct: 18 GPDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAVIAERELEEA--- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQR 139 ++V+++ + L A ++A+TG+ GK++ + QI Sbjct: 75 ------VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKDLLLQILSE 128 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + LT + + AS G L Sbjct: 129 DGPTVAPKLSFN----NEVGLPLTALQADET---------TRHLVLEMGASGPG-HISYL 174 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I + A P I+ DD + + Sbjct: 175 TDIVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAMAPM 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A R ++G + ++V ++ T+ L G V NAL A Sbjct: 235 ATGPIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374 A + +G+D V L P R + + G I Y +S+ + Sbjct: 295 AAGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAGIA 354 Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +I I V G + + R + ++ +AD + T + + E Sbjct: 355 ALASIGRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYL--EGA 412 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G+ + +A R + V++V KG Sbjct: 413 SGVANRTVASDPSDAARLVARFAEEGAVVLV--KG 445 >gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 134/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + V + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechocystis sp.] Length = 454 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 149/474 (31%), Gaps = 55/474 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ L + L + +IN + +D+R + +G +F+A+ G DGH FI Sbjct: 1 MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+ GA A+V + +V++T A+ + I+ V Sbjct: 61 PQALTAGAIAVVTDRPVE------GLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGV 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + + G + + +P Sbjct: 115 TGSVGKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPD-------------- 160 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 VE + G Q L TN+G HI + + Sbjct: 161 -HDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGS-ELAIAEAKCELLAHQ 218 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P ES AI+ D+A E +R + + I + + + Sbjct: 219 PPESTAILNRDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPL----- 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G N L A L +G+D + + + GR + Sbjct: 274 ------PLAGVHNASNYLAAIALAQCLGLDWQQLQ-SGLTVELPKGRARRYQWGQDVVLL 326 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414 Y S+ L + R + V G GD +G L D Sbjct: 327 DETYNDGLESMLASLDLLANTPGKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLF 386 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLV 463 + ++P + I G G + + + A++T L D L+ Sbjct: 387 LLANDPNT-------DAIAAGANGVETQSFSDGPSLVAALKT---TLQPGDRLL 430 >gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] Length = 353 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 138/358 (38%), Gaps = 28/358 (7%) Query: 2 KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +L D++ K +F E+++ + ++ +S DSR + +F A G + Sbjct: 6 QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 63 LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA TGT GK++ A F + + S + T+ ++LTTP + L ++ Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ G+ G F N+ DHI + + Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGP---IEHPTFEDYFYHKR 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ + + L ++ + Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F NA+ A C+ +G A + + + K VPGR E + + Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH 340 >gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] Length = 503 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 158/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+A+GA ++V + P +VVDNT L+ A+ + +LA+ Sbjct: 55 TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + + + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + V G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ + L + V GR + T G Sbjct: 278 QGEAPIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70] gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70s] gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis Sweden2] gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/150] Length = 450 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 163/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] Length = 457 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 15 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 66 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 67 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 127 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 176 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 177 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 234 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 235 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 294 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 295 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 354 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 355 VIGEMGEVGDEGPAFHREIGAYA 377 >gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei NCTC 13177] gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] Length = 468 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] Length = 468 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G + Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A A ++ D + + A V Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + V + + I G D GE NAL A +A G+ Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A + LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 509 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 89/521 (17%), Positives = 159/521 (30%), Gaps = 78/521 (14%) Query: 5 DLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 D+ E++ I P Q + V DSR + G +F+A+ G + DGH F Sbjct: 3 DMTIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHDFAA 62 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL------------------S 103 A+ GA A++ + + VD+ L + Sbjct: 63 AAVQSGAVAVLAARPVGVPAIVVRPDGG-----VDSASGALEHDTDGSGAAVLAALARLA 117 Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 + I+ VTG+SGK+S + + G G + Sbjct: 118 AAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 T +L + + A G N+G H+ ++ Sbjct: 178 TRDTDFL-------------VLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFGSR 224 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 +A K L + + I+ ADD + ++ R+ + V Sbjct: 225 EAIAKTKAEL-PQAVGPSGVVILNADDIAVAAMAEQTDARVVRISRDPGSDIDVWAGPVT 283 Query: 284 AIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + + T+ + D + G+ QV NAL AA + + G V + L Sbjct: 284 LDELARPRFTLHTRDGEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAAAGPA 343 Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----------GRIIVVFGCG 391 R + I Y +S+ LK + + R V G Sbjct: 344 SRHRMQVSTRADGVTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLGEM 403 Query: 392 ---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGN 444 GD + +G+ A+ L + + +V R+ + ++ G + Sbjct: 404 AELGDDAITEHDAIGRFAVRLDVSRLLVVGSG--RAMNAMH-HGAVMEGSWGSESTMVAD 460 Query: 445 RIEAIRTAIEMLNKQDVL----------------VVAGKGH 469 A+ + L DV+ +VAG+GH Sbjct: 461 ADAALTVLRDELQPGDVVLVKASNSVGLGALAEALVAGEGH 501 >gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Oceanobacillus iheyensis HTE831] gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15) [Oceanobacillus iheyensis HTE831] Length = 455 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 74/443 (16%), Positives = 152/443 (34%), Gaps = 33/443 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I EV+ D+R + +++ IVG + DGH FI AI GA A + + + Sbjct: 22 DITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKNGAIATLWDKSIP---LPSEW 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ P+ V++T + A+ ++ VTG++GK++ + + + S ++ Sbjct: 79 DNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTTKDLITSVVKTSYKTTAT 138 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P L + + S G + + Sbjct: 139 QGNLNNHIGLPLTILSMQPDTEVL-------------VLEMGMSQFGEIELLSKIAEPDY 185 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G HI+ +++ AK+ + + + + ++ + + Sbjct: 186 TVITNIGESHIENLGSRKGIAKAKLE-----IIEGIKSNGNLFIDDDEPLLAKENIDMDD 240 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +G + + T + E D + L GE NA A + A+ Sbjct: 241 SQIIGIGFTKESDINISNVKVHPDRT-TFEVTDKPYHVNLLGEHHAKNAAFAISIGKALN 299 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRII 385 I + KL V RFE + I Y ++ S++ ++ ++ + + Sbjct: 300 ISHENIQLAFNKLEVTGMRFELETGINGVHIINDAYNASATSMKASIQVVKEMEGFQNKV 359 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440 +V G G + + ++ E I EI P Sbjct: 360 LVLGDILELGTYSEHYHRSIAEVIDSRISEIY-----TYGEQAFYIYDEITKQHPKVNVH 414 Query: 441 EKGNRIEAIRTAIEMLNKQDVLV 463 R + + + E LN Q +++ Sbjct: 415 YIKQREDVVPSLKEHLNNQTLIL 437 >gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] Length = 454 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 173/469 (36%), Gaps = 38/469 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ N ++ + + I+ VS+D+R I G +FVA+VG + D H F QA+ Sbjct: 1 MIKVTLSQIAN-ITRGELFGDDLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++V + N P +VV +T+ L AS ++ +A+TG+ G Sbjct: 60 AGAGALLVQK---------HLDVNVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I Q G F G + P+ L + Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + +K N+ H++ + A + L S AI Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGSIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302 + D + + + S + + + I+ ++ + Sbjct: 217 VNLDSSGETKWESVLADKEVITFSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIEL 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + G+ V NA+ A+ + + +G V L+ L+ V GR E + + I Y Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 + +++ + + R +++ G+ +G+ A ++T Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLT---- 392 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468 D + I +E+ GI F IE I+ ++ ++V KG Sbjct: 393 YGADAKVI-SELCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437 >gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] Length = 454 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 137/383 (35%), Gaps = 24/383 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +S+DSRH+Q G +F+A+ G D H F+ + + A++V Sbjct: 19 ADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKVAAVLVER--------VP 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V +TR + A + ++ VTG++GK++V + I + + + Sbjct: 71 ENYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTAWGENC 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + L + + + E + G+ Sbjct: 131 LATSGNFNNDVGVPLT-----VFRLNEMHRAAVIELGMNHIGEMAYLASIAQPTVGL--- 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N R+H ++ Q+ +A + LP+ A+ ADDAYS A Sbjct: 183 ---VNNAQREHQEFMQSVEAVARENGTVIRM-LPENGIAVFPADDAYSSLWAGYAGGRQT 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ + ++++ E + G V NA+ AA C+A Sbjct: 239 MTFGFSKDADVSAAYRIEKGKTRLVMSLAGEQVE--MSLSTSGRHNVRNAMAAAACCLAA 296 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI + E LEK V GR E + I Y +S+ + + + S I Sbjct: 297 GIGKLEIAEGLEKFVPVRGRLERKTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDGIF 356 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G G+ + +G A Sbjct: 357 VLGDMGEVGEEGERFHAEVGAYA 379 >gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] Length = 464 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 170/472 (36%), Gaps = 49/472 (10%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 EL++ + P E ++++V++DSR G +F A+ G D H F+ Q QGA+ Sbjct: 9 LSELLSAKEVNPPS-AELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAKI 67 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +VV A + P LVV NT+K L A + + + A+TG+SGK++V Sbjct: 68 LVVEHADPA--------VSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVK 119 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I Q++ ++ ++ T+ + LT + + A+ Sbjct: 120 EMTAAILQQTAKNADEVLFTAGNFNNDIGVPLTLL---------RLTDQHRFAVIELGAN 170 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G + + N+ H+ + Q A + L + A+I D Sbjct: 171 HAGEIAYTTQLARPDVALVNNVAPAHLAGFGSLQGVAKA-KGEIYQGLTENGIAVINQDC 229 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 Y + + S+ + I+ + + + + + + P G Sbjct: 230 NYLPMWQQNIAQHPIKRFSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLH 289 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL AA L IA+G V + L V GR + NS+ + Y +SL+ Sbjct: 290 NVSNALAAASLAIALGATLDDVKKGLALGKRVKGRLFPIEVNSQLTLLDDTYNANVDSLK 349 Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-----------LDLADIAIVT 416 + + + ++V G G+ + + + A + + T Sbjct: 350 AAISVLYSAPQQVKVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSRVISQT 409 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +D ++ A++ + A + + +++ KG Sbjct: 410 CGGKHYQDKAELIADLQ----------------QYAAQQMKAGKTILILVKG 445 >gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis EO147] Length = 468 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 139/394 (35%), Gaps = 26/394 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR G +FVA+ G D H F+ A+GA A +VS Sbjct: 15 GATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR--- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + N P L V +TR L A + ++AVTG++GK++V + I Sbjct: 72 -----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + ++ ++ P+ L + + V + + R Sbjct: 127 AAAGADARLATAGNFNNDI-------GLPLTLLRLTAAHRLAVVE-LGMNHPGETETLAR 178 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L + A+ ADDAY+ Sbjct: 179 IAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYASIWRV 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ G V + + ++ I D GE NAL + Sbjct: 236 AATGNRIVDFALHGAGHDTPA-AVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNALAS 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374 +A G+ A + + LE V GR + G + D Y +S+ + Sbjct: 295 TAAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + ++ R++V+ G GD +G A Sbjct: 355 VLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYA 388 >gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] Length = 456 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 93/468 (19%), Positives = 163/468 (34%), Gaps = 38/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + + + + V +DSR I A +FVA+ G + DGH ++ + A Sbjct: 1 MLKPWLLSEVAANLNARVIGADVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAEVAA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A +V + + P L+V +TR L + ++ AVTG+SG Sbjct: 61 KGAVAALVEREVA--------NAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV + I + G + + + +P+ L + + + Sbjct: 113 KTSVKEMLASILRA--------GLNGAVLATRGNLNNDLGAPLTLLELVPEHR---AGVI 161 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + TN G H+ + A E LP + A+ Sbjct: 162 ELGANHVGEIAYTVSLTQPQVAIITNAGNAHVGEFGGPEKIVEA-KGEILEGLPSDGVAV 220 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304 + DD +RA ++ H + Q T+ Sbjct: 221 LNLDDKAFVTWQRRAAGRKVLSFALRDTRADFHGSDLARDERGCQGFTLRSPIGSARIQL 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L GE V NAL A A+G+ +++ LE L V GR + I Y Sbjct: 281 NLLGEHNVANALAACAAAHALGMPLVAMVQGLESLQPVKGRAVAQLAPNGVRVIDDSYNA 340 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ + + SGR ++V G G+ +QG R +G+ A D Sbjct: 341 NPVSMCAAVDILAGF-SGRTVLVLGDMGELGEWAEQGHR-DVGRHAAGKVDALYAVGPLM 398 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R + ++ E I A+ L++ KG Sbjct: 399 RF--------AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLI--KG 435 >gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis C6786] Length = 468 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 137/394 (34%), Gaps = 26/394 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR G +FVA+ G D H F+ A+GA A +VS Sbjct: 15 GATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR--- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + N P L V +TR L A + ++AVTG++GK++V + I Sbjct: 72 -----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + ++ ++ P+ L + + V + + R Sbjct: 127 AAAGADARLATAGNFNNDI-------GLPLTLLRLTAAHRLAVVE-LGMNHPGETETLAR 178 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L + A+ ADDAY+ Sbjct: 179 IAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYASIWRV 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ G V + ++ I D GE NAL + Sbjct: 236 AATGNRIVDFALHGAGHDTPA-AVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNALAS 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374 A G+ A + + LE V GR + G + D Y +S+ + Sbjct: 295 TAAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + ++ R++V+ G GD +G A Sbjct: 355 VLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYA 388 >gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] Length = 453 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 151/395 (38%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V Sbjct: 19 GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ LVV +T++ + + ++ + +A+TG+ GK++V V I + G Sbjct: 71 -LEADCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + G + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + + AI+ D + + Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V + + D + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A V L L V GR + I Y + +++ + + + ++ R Sbjct: 296 EMGASLAEVRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] Length = 462 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 139/410 (33%), Gaps = 24/410 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ I + + F + + V DSR IQAG +FV +V DGH +I Sbjct: 1 MKMT--IGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A + +S ++ + + P LVVD+ + K ++AV Sbjct: 58 DNAIAGGASATLWASDHADR-----LPLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + + P + + S + Sbjct: 113 TGSNGKTTTKDMIAAILSSTFNVTKTQDNFN----------NEIGLPYTILQMES---NT 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + G L + + + + + L Sbjct: 160 EFLVAEMGMDRPG-QLDFLSKLARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKA 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ E ++ + + + + Q +++ + Sbjct: 219 DGFFVYDGDEPLLTERAQQVDESVIKATFGRKDSNDVFAIDSKDGQYQTQFHVNL-WPEI 277 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DF P+ G++ V NAL A + I ++ + L K + R +++ + + Sbjct: 278 DFTIPMIGDYNVNNALAAISVGRIFRIHPQMMADKLAKFDLTKNRTQWLSGSKGERILSD 337 Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 Y + + +L + T GR I V G + + + +A L Sbjct: 338 VYNSNPTAAKEVLTAFKNTTTKGRRIAVLGDMLELGTQSKAMHASLADAL 387 >gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] Length = 468 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 82/458 (17%), Positives = 148/458 (32%), Gaps = 40/458 (8%) Query: 13 ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 E+ + + + ++ D R G +FVA G DGH + PQA GA A+ Sbjct: 3 EIASLVGGKVIGDGSVTVSAPAVIDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVAV 62 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSV 129 + S + P +VVD+ + L A+ + + ++A+TG+ GK+S Sbjct: 63 LGSR-----------PTTLPTVVVDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTST 111 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + + + G +N L P L ++ + + A Sbjct: 112 KDMIEAVLSSAAPTVATSGS--------FNNELGVP-----LTMLRADATTRFLVLEMGA 158 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 G + TN+G+ H+ +++A A L A+++AD Sbjct: 159 RHIGDIAELTGLVAPDIAVVTNVGQAHLGEFGSREAIAVA-KSELVRGLAGGGTAVLHAD 217 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D + + G + + + + + + P G Sbjct: 218 DPRVLAMSDLTDGPVLTFGAGERAGVRVRDLALDRLG-RPSFALRHDDATAVVTLPFVGA 276 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 NA AA +A G+ L + R E + + Y S Sbjct: 277 HWALNAAAAAAAGLAAGVGLGQAATALNTASISKWRMELRALSGGATLLNDSYNANPEST 336 Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L + I + R I V G G+ + +G A AD+ +T E Sbjct: 337 RAGLDALAAIEARRRIAVLGEMLELGETSRDAHHEIGTYAATRADLV-LTV----GEAAA 391 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 I + + AI L DV++V Sbjct: 392 VIADGAGA---KAVALPDNAAAIDWLRSHLAPGDVVLV 426 >gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] Length = 457 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 78/483 (16%), Positives = 161/483 (33%), Gaps = 58/483 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + IN++ DSR I AG +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++V++ + A+ K +++ Sbjct: 54 FIQTAFENGALATFTEKD---------LPADQAHILVEDALEAFQKLAAYYLEKTGVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G+ L K +T S Sbjct: 210 MPDGSLLLVPSDPIVDPFLPSNLEVV-------RFGEGSDLTVSELTEYKDHLTFSTNFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + G+ + L L + R E+ + + Sbjct: 263 DGQITLPVTGKYNATNAMVAAYVAKHWGVTEENIFSALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + + ++ L LA D Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEA-IRTAIEMLNKQDVLVVA 465 I ++ D ++ +++ I ++ +A ++ E L + D +++ Sbjct: 383 TVIFYGEDIA--DLSQLASQMFP-IGHVYYFKKTADEDQFDAMVKRIKESLGEHDQILL- 438 Query: 466 GKG 468 KG Sbjct: 439 -KG 440 >gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] Length = 462 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 80/412 (19%), Positives = 151/412 (36%), Gaps = 34/412 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + +F E++ I K + VS DSR ++ +F AI G + DGH F+ Sbjct: 1 MNEALMTIGEFAEML-GSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + + + + + P ++V +TR+ L A + K ++AV Sbjct: 59 QA---------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 G++GK++ V I + +G +++ + L Sbjct: 110 AGSNGKTTTTQMVLSIIKERFQKGAWVGTEGNLNNELG---------VSLMLW---KLRP 157 Query: 181 GVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 E + + + R + I G+ TN RDH ++ + + +F + L Sbjct: 158 EHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQ-L 216 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P++ A+I A D ++ E K RV++ G ++ +V + Sbjct: 217 PRQGVAVINAADPFAVEWRK--MAGNNRVVTFGTPDSDVYACEVEGTA----FRLVTPIG 270 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D +PG+ + NA+ AA + A+G D + + LE V R E V + I Sbjct: 271 QIDIELKVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVI 330 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 Y +S+ + + +I V G G + +G+ Sbjct: 331 DDSYNANPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRR 382 >gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] Length = 457 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 72/413 (17%), Positives = 143/413 (34%), Gaps = 28/413 (6%) Query: 9 KDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + +I L ++ + + + V DSR + G +++ I G +GH F+ QAI Sbjct: 3 RSIDSVIRMLDADYIENSDIEEMLMGVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDN 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA+A++ +++V++T K L A + ++ +TG++GK Sbjct: 63 GAKAVLWER------REPNPPKEVTVILVEDTTKALQDLARAYRNQLDMKVIGITGSNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +S V + ++ +G + P+ L S+ + V V Sbjct: 117 TSTKDIVASFMAQHYITQKTMGNFN----------NEIGVPLTLL---SFSQNVEVGVVE 163 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G + ++ TN+G H++ + + AK+ + E L Sbjct: 164 MGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIARAKVEIAEGLRDGGMLIYN 223 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + G + S G Q + + +Q+ +S D + Sbjct: 224 GDQPLLKDALRAAQLSGGIALRSFGTQQGNDY---IVHEVCQQKEGLSFYINDVACHLDM 280 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+ Q NA A A+ + A L+ E + R E V + + Y Sbjct: 281 IGKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGLRNELVSFDQA-LILNDSYKSNP 339 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 S L + + V G G+ +GK + ++T Sbjct: 340 QSALAALDTLEEFDIPYKLAVLGDMLELGETSDQIHYQLGKDLKNYHLQEVLT 392 >gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] Length = 468 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS +T N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLAT 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L + + + V + + G Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A L + A+ ADDAY+ A + Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDFA 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + G+ V + + ++ I D GE NAL A +A G+ Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 A V LE V GR + + G + D Y +S+ + + ++ R++ Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G GD +G A Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388 >gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 153 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 8/150 (5%) Query: 6 LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ ++ Q+ I VS D+R I+ G ++V I G + DGH F+ +A Sbjct: 1 MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + N P++ V++T L + A + ++ VTG+ Sbjct: 61 VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +GK+S V + G + Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144 >gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga algicola DSM 14237] gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga algicola DSM 14237] Length = 436 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 128/365 (35%), Gaps = 32/365 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 K + +S+D+R + IF A+ G DG+ + +A+ GA+ V+ + Sbjct: 23 LKFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDAT--- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V + L A+ + ++A+TG++GK++ + + + + + Sbjct: 80 -----ILVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATV 134 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206 G + P+ L + + + + A+ H + L I + Sbjct: 135 GNLNNH----------IGVPLTLL---AIKEDTEIAIIEMGAN-HQKEIEFLCNIAEPDF 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN G+ H++ + + K L++ L E P ADD + Sbjct: 181 GYITNFGKAHLEGFGSFEGVIKGKSELYDYLQKDEKPIFFNADDELQANKLSNY------ 234 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + G+ H + V I E ++ L G + N A + Sbjct: 235 INKFGFSETDSHYYNIQLKEADPFVQIIFENQEIV--SNLIGAYNFINCCAAIIMGKYFN 292 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + +E+ R + + N I Y +S++ L N + + + IV Sbjct: 293 VSIDQIKNGIERYIPSNNRSQVLTQN-TNEIILDAYNANPSSMKAALDNFSKLKTTKKIV 351 Query: 387 VFGCG 391 G Sbjct: 352 FLGDM 356 >gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] Length = 452 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 168/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ + D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] Length = 455 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 141/386 (36%), Gaps = 25/386 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + VS+D+R + AG +FVA+ G D H F+ + +G A+V Sbjct: 19 ADASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAER--------IP 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L+V +TR L A ++ VTG++GK++V + I + + Sbjct: 71 ENYPLPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFKTAFGEDG 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ + ++ P+ + + + + + Sbjct: 131 RLATSGNFNNDI-------GVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIA---QPT 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G N R+H ++ QT A + LP+ A+ AD+ YS + A Sbjct: 181 VGLVNNAQREHQEFMQTVLAVAEENGTVIRS-LPENGTAVFPADEPYSDLWTRYAGARQI 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R +G K K V I EGK + G+ V NAL AA + Sbjct: 240 RTFGLGKDAKVSGQYKNE--DGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSA 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GID +++ LE V GR E + I Y +S+ + + + SG+ I Sbjct: 298 GIDWQTIVKGLEAFSPVHGRLEKKNAFNGALLIDDTYNANPDSVRAAIDVLAEL-SGKGI 356 Query: 386 VVFGCGGDRDQG---KRPIMGKIALD 408 V G G+ +G+ A + Sbjct: 357 FVLGDMGEVGNDGERFHVEVGEYAKE 382 >gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] Length = 466 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ + I V DSR + G +FV + G + DGH F Sbjct: 3 MTLSDILAAT------GAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFA 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ +GA A++ A + TP+L+V +T L A + ++AV Sbjct: 57 AEAVEKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGRLARAWRERVGARLVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +G++GK++V I + G ++ + Sbjct: 111 SGSAGKTTVKELTAAILGKVGPTAKNYKNFNN 142 >gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 451 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 162/420 (38%), Gaps = 43/420 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL LI + + +I VS+D+R + G +FVA+ G + D H F Sbjct: 5 RLADLAQVLDARLIGE---------DGEITTVSTDTRTLGKGALFVALRGERFDAHDFCD 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA+A GA A++V SL P LVV ++ K L + + +LA+T Sbjct: 56 QAVAAGASALLVERELSLA---------IPQLVVTDSLKGLGHIGKLVRERINPKVLAIT 106 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++V I + G G + P+ L Sbjct: 107 GSCGKTTVKEMTTAILRHEGEVLATAGNFN----------NEVGVPLTLL---RLEPQHQ 153 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A+ G + A N+ H++ + + F+A E L ++ Sbjct: 154 FAVMELGANHPGEIAWTTSLARPDAALINNVAAAHLEGFGSLEGVFHA-KSEIFEGLSEQ 212 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 AI+ AD A+ + + S+ Q + H + + + + + Sbjct: 213 GTAIVNADSAFWPKWQAAGIHCA---FSIEDQNQPFHARGIALNGQGCAEFVMVTPNGEL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG V NAL AA C+A+G A V LE++ V GRF G + Sbjct: 270 SLTLAIPGRHNVANALAAAAGCLALGASLASVKAGLEQMAPVKGRFCVQRWG--GLTLVD 327 Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 D Y + S+ + + + G ++VFG G+ + +G+ A + A++T Sbjct: 328 DTYNASVESVLAGIDALTAM-GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAVLT 386 >gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxidans DMS010] gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxydans DMS010] Length = 451 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 144/408 (35%), Gaps = 31/408 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L E++ +I + + K++ D+R IQAG +F+A+ G DGH ++ Sbjct: 1 MGL-NLTLNQVAEIVACDAI----YADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Q + + S P LVV + RK + A + ++A+ Sbjct: 56 AQ---------AREAGAAAALVSEIQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV V + ++ G + G +N L P + + Sbjct: 107 TGSNGKTSVKEMVTTMLKQVGSVTATQGNL--------NNELGVPLTLSCLNQDDDFA-- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + HG ++ + N+ H+ + + K +++ L Sbjct: 157 ---VIEMGTNHHGEIAELVNIVVPDIAVINNIAAAHLAGFGSLEGVAKEKGAIYDGLAAN 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + + + + I + ++++ Sbjct: 214 GIAVV--NADMPYQRLWQPLIGDRKTISFSLESEADIKADYIQLDPASSHFLVNIDDVSH 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PLPG V NAL A + +A+ I +++ L + VP R + + I Sbjct: 272 HFNLPLPGMHNVNNALAAIAVAVALDIPVDAMVKGLSLMRSVPHRLQVRQGVNDSRLIDD 331 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 Y S L + +V+ FG G + MG+ A Sbjct: 332 TYNANPGSYLQALNTLTAFQGEHWLVLGDFGELGIDNDNIHQQMGQQA 379 >gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-66c26] gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-76w55] gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-97b34] gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-37x79] gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile QCD-32g58] gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] Length = 457 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 76/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + + + ++++ DSR A FVAIVG DGH F+ A G + + Sbjct: 11 LATNGKLIYGDYNDC-VSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSGCKTFI- 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + S+ ++ V +T L + K + VTG+ GK++ + Sbjct: 69 ---KNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + P+ L + + S Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ +D + +N+G H++ +Q+ A + + I+ DD + Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ H + I+ + + + GK + P GE +Y Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A + + + I + + L+ R + + I Y + +S++ L Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349 Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 K + R+ + + G + G R ++GK +++ DI I +N E Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406 Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ NR + E++ D ++V KG Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442 >gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 509 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 72/447 (16%), Positives = 137/447 (30%), Gaps = 47/447 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L D E+ ++ + ++++ + DSR + G +F+A+ G + DGH + +AI Sbjct: 4 LSIADIAEITGG-NLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYG 111 QGA A++ + + + + + + LS A + Sbjct: 63 EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122 Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 + + VTG++GK+S + I + G + G + Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPY--------- 173 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 AL + A G +H G N+G H+ +++ Sbjct: 174 ----TALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229 Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVC 283 A ++ + A++ ADD + + R + + Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQ 289 Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + + G+ QV NAL AA I G+D +V L Sbjct: 290 LDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQN 349 Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD--- 393 R + I Y +S+ + R I V G G+ Sbjct: 350 ASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGG 409 Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDN 419 +G++ D + DN Sbjct: 410 EAVAAHRALGEVLSKYHVDHLVAVGDN 436 >gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli WV_060327] gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli RN587/1] Length = 452 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L+ +Q + ++ V++D+R + G +FVA+ G + D H F QA A Sbjct: 1 MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P L+V +TR A+ + + P ++A+TG+SG Sbjct: 60 GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + + G + TP + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + A NL H++ + AK +F LP+ AI Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + AD+ + S + + + T+ D L P Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G + L L VPGR + + Y Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424 S+ ++ + + R++VV GD M ++ A A V E Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 A GI + G + AI TA Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400 >gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] Length = 851 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 92/461 (19%), Positives = 159/461 (34%), Gaps = 28/461 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +LI + + + + DSR Q G +F+A+ + DGH FI AIA GA + Sbjct: 5 ADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 V Q + I ++ +++ ++ L +A + KH +A+TG+ GK+S Sbjct: 65 VC------QYAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKR 118 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q+ + + L+ ++ L++Q + A Sbjct: 119 AIAQVLASRYSVLRSPRSFNAD--------------LGLSVTMAELAAQQWAVLEFGADH 164 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G G TN+G H+ +Q A + K + LP AI+ DD Sbjct: 165 PGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKA-AIIQQLPAHGYAILNGDDP 223 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + +R H RV + + I + G Sbjct: 224 LVAAMAERTHARLLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPE-CIQLLASGVPS 282 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V A A + G+ A + E L L GRF + + I + S+ Sbjct: 283 VQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPLVGRNGATIIDDTFNAAPESVYA 342 Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ + ++ + R I + G G G+IA AD+ I D Sbjct: 343 ALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATSAR 402 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468 A +G + A+ A+ L D+++V KG Sbjct: 403 EASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLV--KG 441 >gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] Length = 426 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 79/411 (19%), Positives = 139/411 (33%), Gaps = 39/411 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + L I K V +D+R G +F+A+VG+ D H +I QA Sbjct: 1 MLQTTTNTIAKVLKIDYS--VNVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQ 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA AI+ + + Q PILVV++T+ LS AS ++A+TG++G Sbjct: 59 MGAVAIIANKSVDSQ---------LPILVVNDTQTALSTIASWHLQNIKPIVIAITGSNG 109 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + I + G + + L T + Sbjct: 110 KTTTKNMLANILSLQAPTLKTQGNLN--NHLGVPMTLLTLE-----------KQHQYAVI 156 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G H + TN HI AK ++ Sbjct: 157 EMGANHLGEISHLRKIVNPDIAIVTNTLDAHIGTFGGFDNLVKAKGEIYS---------- 206 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + + + + +++ + Sbjct: 207 --KNSKNIINTQSIFTGDVSFTPHGNTKVSGNNGDIFASNIVNNKFDLNIHQQKISITLN 264 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G + NAL A+ +GID L+ + LE PGR E + T I Y Sbjct: 265 LIGIHNIDNALAASACVYPLGIDINLIKQGLEATKAEPGRLEIIHTKQF-RIIDDTYNAN 323 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414 S + LK ++ + +IIV+ G+ + +G++A AD Sbjct: 324 PYSTIIALKTLQNFSGEKIIVLGTMEELGNYSKMFHFKIGQLAKKSADTFY 374 >gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 475 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 81/478 (16%), Positives = 150/478 (31%), Gaps = 44/478 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIP 61 L ++ L+ + + + ++ +S+ DSR + G IF A G DGHLF+P Sbjct: 6 LSEIAAATRGRLLLEGTDATPR---TVVDGLSTTDSREVVPGSIFFAKPGETTDGHLFVP 62 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NI 117 QA+ GA +VV + P LVV++T L A+ + + I Sbjct: 63 QALDSGAALVVVDRELDVAG---------PQLVVEDTVVALGELAADVIARVRALGNLRI 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TG++GK++ + ++ I ++SG + + +T Sbjct: 114 VGITGSNGKTTTKNLLRAILEQSGPTIAPRASFN----NEVGAPVTMLEVSE-------- 161 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + AS G + RL G+ A Sbjct: 162 -RTQYLVAEMSASGIG-EIARLVGMARPDIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSD 219 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + A++ DD + + + + + + Sbjct: 220 LLESDVAVLNLDDPRVASMADKTAAHVLWFGLDDRAAVRASDIRSTSRGTSFVLRLPGAD 279 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-----KLHVVPGRFEFVGTN 352 P+ + ++ A A + ++ + R E +G Sbjct: 280 GGDAASRPVRFHVLGEHHVMNALAAAAAAHTLGIGIDRIVGGLEAVQRAERWRMEVLGGA 339 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIAL 407 I Y + +S+ LK + I R I V G G+ + +G +A+ Sbjct: 340 GGVTVINDAYNASPDSMSAALKTLAQIAGPGERTIAVLGEMSELGEFSGEEHDRVGLLAV 399 Query: 408 DLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 L D +V R I G + E + A E L D ++V Sbjct: 400 RLGIDQLVVVGPPARRMHITAINEGSWDGESLYFESQD--AAYDHLKETLRAGDTVLV 455 >gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 468 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 154/456 (33%), Gaps = 48/456 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + +DSR I+ G IF+A+ GN+ DGH FI AI +GA+ +++ + + Sbjct: 32 SIKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVIL--KDEEMSKFTSFNKDIS 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V + + + R I+AVTG+ GK++ + ++ +R+ G Sbjct: 90 FFGVPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGN 149 Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + R T + + A++ G + + Sbjct: 150 YNTLLGCCLTILVAPRNTEFLVLE-----------------MGANAKGEIGEIANRFRPS 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + T++ H++ AK+ E + + D + + + Sbjct: 193 SSVITSVDPVHLEGFGGIDGVLGAKL---EIVTADCKLLFVNGDSPILNSGIDKLKHRPS 249 Query: 266 RVLSVGYQGKFIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +++SVG I+ ++ H +++TI L G+ +A Sbjct: 250 KIISVGTSTSCIYRITDSSLRLDGNHYFRKITIDSPFGLKTVESKLWGKQHTLIISLAFA 309 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + G+ + + L + + GR + + I Y + S++ + N+ I Sbjct: 310 VGCEYGVAPDDIAQGLFVMSLPRGRGAILQSEEGVLFIDESYNASPVSVKAAIDNLCLIP 369 Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR I V G G + A AD ++ SE I Sbjct: 370 SRGRKIAVLGGMKELGSYANRFHDEILDYAAKAADQVLI----HGSE-----WKGINKNY 420 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 + + + + +L DV++V KG Sbjct: 421 KNVLCLQDMEDIVNHLKAILRTGDVVLV--KGSRAY 454 >gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] Length = 470 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 93/451 (20%), Positives = 148/451 (32%), Gaps = 49/451 (10%) Query: 30 INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + V+ DSR + AG +FVA+ G + DGH ++P GA + + Sbjct: 26 VTGAVAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGATVSLTTRPVD---------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VV +T+ L A + + PE ++ +TG+ GK+S + Q+ G + Sbjct: 76 GCPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQGKTSTKDLIAQLVAPYGPTVAPT 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + + LT + A G + G Sbjct: 136 GSFN----NEIGHPLTALQA---------DRDTRYLVAEMGARHLGDIAYLCRITPPKVG 182 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G HI ++ A A + A++ ADD + R Sbjct: 183 LVLNVGYSHIGEFGSRDAIAQA-KGEMIANVAPGGTAVLNADDPRVAAMASRTEQTIRTF 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +V + T+ +G+ F L GE V NAL AA +A+G+ Sbjct: 242 GEAPEADVRATDLEVDGEG-RPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALAVGL 300 Query: 328 DSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGR 383 V + L V R E V I Y +S+ LK + I R Sbjct: 301 TPEQVADGLNAAARVSQARMEVVERPDGVTVINDAYNANPDSVRAALKALVAIGRAREAR 360 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 V G GD + +G++A+ L D R + I G Sbjct: 361 TWAVLGEMLELGDSSATEHDAVGRLAVRL--------DVNRLLAVGEGAKPIHLGASLEG 412 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 EA+ L DV++V Sbjct: 413 SWGNESAYVATIAEALELLRGELRSGDVVLV 443 >gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] Length = 499 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 77/500 (15%), Positives = 160/500 (32%), Gaps = 61/500 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I SDSR ++ G +FVAI G + DGH F+ Sbjct: 10 MGLAEIEQAVHGRLVTAEGISSNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 66 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 + AQGA A +V + + P +VVD+T + L A + P Sbjct: 67 SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 118 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ + + G + +G + P+ K + Sbjct: 119 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 168 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G + + +G H+ + + AK + + Sbjct: 169 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 225 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L+P + D+ + L + + + + Sbjct: 226 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 285 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVV-PGRF---EF 348 + + G ++N + A +G+ + L + + P R Sbjct: 286 RDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAI 345 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI-- 401 V +R I + +S++ L + + I V G + +R + Sbjct: 346 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 405 Query: 402 -MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN- 457 +G A+ A++ + + + + + G G+ A+ A I+ + Sbjct: 406 QVGSYAVQGGVNALIAVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQADA 462 Query: 458 ---------KQDVLVVAGKG 468 V+++ KG Sbjct: 463 LVSRLATEHAGTVVLL--KG 480 >gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 451 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 80/467 (17%), Positives = 147/467 (31%), Gaps = 34/467 (7%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ + ++ + I VS DSR I +F+ G DGH ++ QA+ Sbjct: 1 MIEVTLEQIKTWIPCEIENEFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA A L + + PI+ VD+T + L A ++AVTG++ Sbjct: 61 KDGAGAAFYQKGEPLDE-----NIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ + + G +N + P I Sbjct: 116 GKTTTKDMIESVLKPQFKVKKTQGN--------YNNEIGMPLTI-------LQLDIDTEI 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E G + L AK + L K Sbjct: 161 SILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLGSREGIAKAKSEITLGLKPGGL 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 IY D E V + + TI+ + + Sbjct: 221 FIYDGDEPLLEPYANEIQNADLVSFGKNSDNTLVSTIETIKDHGIAFTINHDE---HYEL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P+ GE + NA +A + + + + +L+ + + R E T I Y Sbjct: 278 PILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNVVLTGMRMEQHHTKDEILVINDAYNA 337 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPR 421 + S++ + + + GR I+V G + + + + L D I T N Sbjct: 338 SPTSMKAAIDTLSGM-EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGN-- 394 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + + + IR+ + D ++V KG Sbjct: 395 --EAAHISHTGKAFVKKSEAFKEKADLIRSLKGYVQANDKVLV--KG 437 >gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 509 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 73/447 (16%), Positives = 137/447 (30%), Gaps = 47/447 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L D E+ S+ + ++++ + DSR + G +F+A+ G + DGH + +AI Sbjct: 4 LSIADIAEITGG-SLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYG 111 QGA A++ + + + + + + LS A + Sbjct: 63 EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122 Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 + + VTG++GK+S + I + G + G + Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPY--------- 173 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 AL + A G +H G N+G H+ +++ Sbjct: 174 ----TALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229 Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVC 283 A ++ + A++ ADD + + R + + Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQ 289 Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + + G+ QV NAL AA I G+D +V L Sbjct: 290 LDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQN 349 Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD--- 393 R + I Y +S+ + R I V G G+ Sbjct: 350 ASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGG 409 Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDN 419 +G++ D + DN Sbjct: 410 EAVAAHRALGEVLSKYHVDHLVAVGDN 436 >gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 481 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 135/381 (35%), Gaps = 20/381 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR I AG +FVA+ G + D H F+ + GA A ++S+ N Sbjct: 32 ITRVGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISNKDKC-------PKN 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + +++TR L A + VTG++GK++V + I + + S + Sbjct: 85 LPAVCIEDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAAVGESHTLVT 144 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ A+ L ++ A Sbjct: 145 KGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQ----------ANIALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T A + LP++ A+ D ++ K A + Sbjct: 195 NNAQREHQEFMATVAAVAQEHADVIRA-LPQDGIAVFPGDSEFTDLWRKAAADRKVLDFV 253 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + N ++ ++ E G V NAL A+ + IA GI Sbjct: 254 LSSTQTNASSAVGGKLLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIAAGISL 313 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387 + E LE V GR + ++ I Y +S+ + ++ + IV+ Sbjct: 314 KKIQEGLESFQPVNGRMQAKTIDANHTLIDDSYNANPDSVRAAIDALKQSGNNAWIVLGD 373 Query: 388 FGCGGDRDQGKRPIMGKIALD 408 G GD+ +G A + Sbjct: 374 MGEVGDQGPEFHQEVGAYAAE 394 >gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Anaerostipes sp. 3_2_56FAA] Length = 451 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 160/473 (33%), Gaps = 50/473 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +QD++ L+ + P IN +S+DSR + +FV IVG + + H F+ Sbjct: 4 MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ G A + + PI+ V +T K + AS K I+ + Sbjct: 57 ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TG+ GK++ + + + +G S + +RLT+ I + Sbjct: 109 TGSVGKTTTREMIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGV--------- 159 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + S G + I+ A TN+G HI+ ++ K+ + L Sbjct: 160 -----LEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPE 214 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +D K + + + + IH + T E Sbjct: 215 NGVLYLNGDNDMIRKHI---GYVTHPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMK 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + + G+ V NAL A L +A + + L + G Sbjct: 272 EPVILNVLGDHNVSNALAAIALGLAYEVPMETIKRQLATFSG-----QRQNILKIHGYTV 326 Query: 360 VDYAHT--SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 +D A+ +S++ LK + GR I V G +G+ AD Sbjct: 327 IDDAYNASPDSMKAGLKILSDYKDSGRKIAVLSDMLELGPDSPDYHREVGEFLGT-AD-- 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVV 464 +TD +K K + E I + L + DV+++ Sbjct: 384 -ITDLYITGTLSKKYAEAAQKKNLSLKTKWFSSNDELISYLKDYLKENDVVLI 435 >gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] Length = 453 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] Length = 493 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 77/500 (15%), Positives = 160/500 (32%), Gaps = 61/500 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I SDSR ++ G +FVAI G + DGH F+ Sbjct: 4 MGLAEIEQAVHGRLVTAEGISSNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 + AQGA A +V + + P +VVD+T + L A + P Sbjct: 61 SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ + + G + +G + P+ K + Sbjct: 113 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 162 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G + + +G H+ + + AK + + Sbjct: 163 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 219 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L+P + D+ + L + + + + Sbjct: 220 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 279 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVV-PGRF---EF 348 + + G ++N + A +G+ + L + + P R Sbjct: 280 RDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAI 339 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI-- 401 V +R I + +S++ L + + I V G + +R + Sbjct: 340 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 399 Query: 402 -MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN- 457 +G A+ A++ + + + + + G G+ A+ A I+ + Sbjct: 400 QVGSYAVQGGVNALIAVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQADA 456 Query: 458 ---------KQDVLVVAGKG 468 V+++ KG Sbjct: 457 LVSRLATEHAGTVVLL--KG 474 >gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 459 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 142/420 (33%), Gaps = 35/420 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + ++ + QW E +++ V+ DSR ++ G +FV + G + DGH F+ Sbjct: 3 MNIAEIARAVDAQ------NDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A + ++ S +D P +VVD+ L K ++AV Sbjct: 56 ATAFQNGASATLWAADRSYED------DGYPRIVVDDPLAALQQLGKYYLHKINPLVVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G++GK++ + I + + I + L + S Sbjct: 110 SGSNGKTTTKDMIASILSTQMNVTKTYANFNN--------------AIGVPVTLLNMESN 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V SH + L + + + + + L + Sbjct: 156 TEAVVVEMGMSHFGELDELSKLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLRE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ +E K + + + +V + + + Sbjct: 216 DGTFVYNGDEPLLRERAKDLKQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNLWPDEE-- 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ GE+ V NA+ A + + + + + L + + R E++ + Sbjct: 274 -FTIPMIGEYNVNNAMAAMMVGHLLHVTPSHLKIGLANVELTENRAEWLTGQQGEKILSD 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415 Y +++ +L+ + + +GR ++V G GD + +I + Sbjct: 333 VYNSNPTAVKEVLETLNELPETGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFL 392 >gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] Length = 465 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 163/458 (35%), Gaps = 44/458 (9%) Query: 25 WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + V +DSR QAG ++VA G DGH F+ A +GA A++V Sbjct: 18 GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEA--- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139 +VV+++ + L A K +++A+TG+ GK++ + QI Sbjct: 75 ------VTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + +N + P + LA + + + AS G + Sbjct: 129 DGPTV--------APKLSFNNEVGLPLTVLLA-----DETTRHLVLEMGASGPGHITYLT 175 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + +G H+ + AK L + P I+ DD + + Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKG-TRPGGPVILNTDDPNVEAMAPL 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A R + G + + ++ V ++ T+ + + G V NAL A Sbjct: 235 ATGRVIRFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374 A + +G+ V L + P R + G I Y +S+ + Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354 Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +I + I V G + + + + ++ +AD + T ++ + Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGAD-----AHYYL 409 Query: 434 HGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 G P + +A R A+E V++V KG Sbjct: 410 EGAPEVPHREVAADPQDAARLALEHAEDGAVVLV--KG 445 >gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] Length = 453 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc fallax KCTC 3537] Length = 451 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 150/387 (38%), Gaps = 38/387 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ + E++N P Q ++ I+ V+ DSRH++ G +F+A+V DGH +I A Sbjct: 2 NITLEKLAEVLNA----PFQGKDSVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENA 56 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +A GA A++V S + L++ + P ++VD+T + + ++A+TG+ Sbjct: 57 LANGAHAVLVDSQHQLKE-------DWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGS 109 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ +I + + L+ P + Sbjct: 110 NGKTTTKDMAAEIANQQYRTFKTPEN-YNNEIGVPMTLLSMPESTEVLI----------- 157 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + G ++ T +G HI++ +T++ AK+ + Sbjct: 158 -VELGMDRPGQLTVLSHLVEPDIAIITMIGEAHIEFFKTRRNIAKAKLE-----IINGLK 211 Query: 244 AIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A + ++ + + V + G ++ + +N+ Q I+ + F Sbjct: 212 AEGTLIIPNDEPLLTQEISHIEQHVKTFGTIDADVNATDISVENNQSQFNINQQ----KF 267 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G + + NAL A + ID + L + R E + T I Y Sbjct: 268 AIPMLGRYNIMNALAAITAGNLLHIDLKNAQKALLDFDLTKNRTEILHTTHGVTIISDVY 327 Query: 363 AHTSNSLEMILKNI--RTITSGRIIVV 387 +++ +L + R + R +V+ Sbjct: 328 NSNPTAVKAVLATLVSREVQGKRYVVL 354 >gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 453 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 149/485 (30%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + +I + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K N+ Sbjct: 54 FIETAFENGAVVTLTEKEVA----------NHPYILVDDVLSAFQALAAYYLEKTAVNVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + + AK ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D + + G+ L+ I K +T + Sbjct: 209 MASGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLIERKDSLTFNANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + D P+ G++ NA++AA + + G+ + + L + R E+ + + Sbjct: 262 EQDLDLPVTGKYNATNAMIAAYVALQEGVSEEQIRLAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] Length = 453 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKN 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] Length = 481 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 162/447 (36%), Gaps = 35/447 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ Y + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGYFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + + +P I Sbjct: 374 RGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSE-----MSVLKNALPVEI 428 Query: 441 EKGNRI---EAIRTAIEMLNKQDVLVV 464 + R E + ++ + DV++V Sbjct: 429 QIEYRQSTDELLPLVVKAVRPGDVVMV 455 >gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 453 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Paenibacillus polymyxa SC2] gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus polymyxa SC2] Length = 467 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 78/479 (16%), Positives = 161/479 (33%), Gaps = 48/479 (10%) Query: 8 YKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI- 64 + ++ + + + + V +DSR Q+ +FV +VG + DGH ++ Q + Sbjct: 2 KRTIGQIASMCGGTLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVS 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A + + + V++T + L A+ + +++ +TG++ Sbjct: 62 ERGATAYLWQKDHGA-------PPTVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ V + +G T + + P+ + Q Sbjct: 115 GKTTTKDIV----------NALLGTTFKVHKTEGNYNNHIGLPLTVLSM-----PQDTDI 159 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + +E G + RL Q A+ +L K Sbjct: 160 LVLEMGMSGRGEIRLLANIAQPDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKPGGL 219 Query: 245 IIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +IY D + + G + + G + + I+ + Sbjct: 220 LIYNGDEPLLPQVLAEPETVKPEGLELFTFGLAADNDDYPTEITSDGEGSLFITAQSGQE 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PL G+ V N L A + +D+ + + L L + R E V + + Sbjct: 280 AFRLPLLGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVKCSDGLTVLND 339 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + S++ ++ + + GR I V G G ++ +G+ A A+ T Sbjct: 340 AYNASPASMKAAIQTLSAYKTGGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFT 399 Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + A I G ++ + I+ L+ D+++V A +G Sbjct: 400 --------YGALGASIAQGAQGTMPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRG 450 >gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] Length = 456 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 70/473 (14%), Positives = 151/473 (31%), Gaps = 44/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E +W + I V DSR I++G +F+ +V DGH ++ Sbjct: 3 MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + +D S I + +L V +T L K ++A+ Sbjct: 55 EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + + P Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + +G L + + + + + + L + Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ K S+ + + K ++ + Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVLTFGSLDNNDMC--AMDIVSDATKTSFKVAT-WPEV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DF + G + V+NAL A + I + + L + R E++ + + Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415 Y +++ +L + + G+ I+V G G++ + + D D + Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYL 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464 E + ++ + + + T L D++++ Sbjct: 393 C-----GELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMSDDIVLL 440 >gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] Length = 463 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 138/391 (35%), Gaps = 29/391 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++N +S D+R I+ G +FVA+ + DGH F+ QA+ +GA A +VS Sbjct: 19 SDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVS------HIPEG 71 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + P+L+V++ + L + ++AVTG+ GK+S + + G + Sbjct: 72 VAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHA 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + P+ LA+ + + + + G + Sbjct: 132 AVASYNNHWGV----------PLTLARMPAD---TEYAVIEIGMNHPGEIAPLSRQARPH 178 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T + H++ + K E L A++ AD + + A +AG Sbjct: 179 VALVTTVAAVHLEAFEDVAGIAREKA-AIIEGLEPGGIAVLNADLEETPVLRDVAQDAGV 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G L++ + + I ++F G NA A A+ Sbjct: 238 ATRWFGQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAIEAL 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSL---EMILKNIRTITS 381 G D L L L+ V GR G +D A+ +N + T T Sbjct: 298 GADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAATPTE 357 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 GR I + P ++ LAD Sbjct: 358 GRRIAYLADM----KELGPEEARLHAGLADH 384 >gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 146/416 (35%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR IQ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + TP Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELTPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ +H + TI+ Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + SGR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388 >gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 144 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 1 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 60 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST 152 K+SV I + G + + + Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFNN 137 >gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 83/445 (18%), Positives = 154/445 (34%), Gaps = 29/445 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 IN I ++ V D+R + G +FVA+ G DGH F+ QA QGA A +V Sbjct: 10 AINAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S + + + ++ +++V++T + A+ +A+TG+ GK++V V Sbjct: 70 S---NQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGKTTVKDIV 126 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + S + ++ P+ L + + + A Sbjct: 127 ----------AHVLASRSPVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEID 176 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L + + T +G HI+Y T++ AK L + D+ Sbjct: 177 LLASLV---QPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLL--NKDSEY 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + SV + + + G+ F+ PL G V Sbjct: 232 LRLIAHLYPGELMYYSVNEKADIWAEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSVL 291 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A + +G+D+ + L + + RFE + I Y + S+E + Sbjct: 292 NALPAVAIAKRLGMDTEQIAYALSTVQLSAMRFEQINGKHATVYISDAYNASPVSMEAAV 351 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + IVV G + R + + + DIA R E I + Sbjct: 352 RTFAELYPECARIVVLGDMYELGPDSRAMHAGVGASIQDIA------ERFELLVTIGEDS 405 Query: 433 I----HGIPGFIEKGNRIEAIRTAI 453 + + EA+ + Sbjct: 406 RHLHDAYAGKKLHFATKAEAMAALL 430 >gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] Length = 462 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 80/412 (19%), Positives = 151/412 (36%), Gaps = 34/412 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + +F E++ I K + VS DSR ++ +F AI G + DGH F+ Sbjct: 1 MNEALMTIGEFAEML-GSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + + + + + P ++V +TR+ L A + K ++AV Sbjct: 59 QA---------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 G++GK++ V I + +G +++ + L Sbjct: 110 AGSNGKTTTTQMVLSIIKERFQEGAWVGTEGNLNNELG---------VSLMLW---KLRP 157 Query: 181 GVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 E + + + R + I G+ TN RDH ++ + + +F + L Sbjct: 158 EHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQ-L 216 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P++ A+I A D ++ E K RV++ G ++ +V + Sbjct: 217 PRQGVAVINAADPFAVEWRK--MAGNNRVVTFGTPDSDVYACEVEGTA----FRLVTPIG 270 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D +PG+ + NA+ AA + A+G D + + LE V R E V + I Sbjct: 271 QIDIELKVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVI 330 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 Y +S+ + + +I V G G + +G+ Sbjct: 331 DDSYNANPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRR 382 >gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] Length = 493 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 78/502 (15%), Positives = 159/502 (31%), Gaps = 65/502 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I SDSR ++ G +FVAI G + DGH F+ Sbjct: 4 MGLAEIEQAVHGRLVAAEGIASNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 + AQGA A +V + + P +VVD+T + L A + P Sbjct: 61 SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ + + G + +G + P+ K + Sbjct: 113 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 162 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G + + +G H+ + + AK + + Sbjct: 163 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 219 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L+P + D+ + L + + + + Sbjct: 220 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 279 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAG---LCIAIGIDSALVLEHLEKLHVV-PGRF---EF 348 + + G ++N + A + +G+ + L + + P R Sbjct: 280 RDAEGECAKVNLGICGMHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAI 339 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPIMG 403 V +R I + +S++ L + + I V G + +R + Sbjct: 340 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 399 Query: 404 KI----ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTA--IEML 456 ++ D I R +D + + + G G+ A+ A I+ Sbjct: 400 QVGSYAVQGGVDALI--AVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQA 454 Query: 457 N----------KQDVLVVAGKG 468 + V+++ KG Sbjct: 455 DALVSRLATEHAGTVVLL--KG 474 >gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 450 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 92/473 (19%), Positives = 162/473 (34%), Gaps = 51/473 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E+ ++ P + I V++DSR + +G FVA+ G + +G F+P AIAQGA Sbjct: 7 KEIAEITGG-ALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 ++V I + P ++V +T L + + +LAVTG+ GK++ Sbjct: 66 GGVLVD-----------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTT 114 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + I +SG G + P + + Sbjct: 115 VKEVLTAILNQSGPVLATRGNQNNHVGVPLTLARLGPE-------------HRYAVLEMG 161 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + G + L G+ + N A A L I+ Sbjct: 162 MNHPG-ELTLLSGLARPTLALINNAAPAHLEGLGSVAAIAAAKGEILSGLDNRGLTILNG 220 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD ++ +RA R + + + F PLPG Sbjct: 221 DDPFADFWAERAPGEVWRFSLEHRPTRVRGHWRAHEQGGGHL-EVRAPQGQFTLEIPLPG 279 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A +A+ I + + L +PGR ++ + Y S Sbjct: 280 QHNGRNVLAATTAALALDIPIPQIQRAVAGLQTIPGRLQWRSGPHGSRMLDDTYNANPAS 339 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQ------------------GKRPIMGKIALDLA 410 LE L+ + G+ I+V G G+ + +G +A + A Sbjct: 340 LEAALRVLAA-QPGQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEEAA 398 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQD 460 + A T+ SE P + A + + + KG+R + ++ L + D Sbjct: 399 N-AFGTNAEAFSELPP-LLAALHRRLDEETVVLIKGSRAARMERVVQALGEGD 449 >gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] Length = 457 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 81/408 (19%), Positives = 141/408 (34%), Gaps = 32/408 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L EL+ + + V +DSR+I G +F+A+ G + DGH ++ Sbjct: 2 MRLSELAAAVGGELVGE---------DVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ G + + +VV NTR L A+ + + A+ Sbjct: 53 LQALQSG---------AAAALVAEAQPGMAAGVVVKNTRLALGQLAAVWRNRFSIPVAAI 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V V I + ++ L S Sbjct: 104 TGSNGKTTVKEMVASILRAEA---------GDSNAVLATRGNLNNDIGLPLTLLRLRPSH 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 T + + G ++ + N H+ + + AK +FE L Sbjct: 155 KYTVAEMGMNHFGEIRYLSQMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEG-LAL 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E A+I ADD Y+ + A L+ G + V + Sbjct: 214 EGMAVINADDLYAPLWTELAGEHDI--LTFGLAKMADVTANYELRADTSYVYMKSPIGGI 271 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F + G V NAL A+ + IA+G + + LE V GR + + I Sbjct: 272 AFNLQVAGLHNVRNALAASTVAIAMGARPESIAKGLEAFDGVDGRLQHRAGIGQALVIDD 331 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 Y S+ + + R++V+ G G+ +G+ A Sbjct: 332 TYNANPASMRAAIDVLAARPGKRLLVLGDMGELGETAAAMHTEIGQYA 379 >gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 829 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 157/453 (34%), Gaps = 44/453 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+ + V+ DSR + G +FVA+ G DGH F+ QA GA +V+ + + Sbjct: 22 PEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASLVVLRRD---RCPDSG 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V + L A+ H ++AVTG++GK+ V + + + + Sbjct: 79 PGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVVKTALTALLAGRFRVAS 138 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 G ++++ P + A + + S+ G + RL+ I + Sbjct: 139 SPGS--------WNSQVGVPLAVLTAPPGTE-----LGVFEAGISAPG-EMERLEAILQP 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G N+G ++ ++ K+RLF+ + DD + Sbjct: 185 DHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWVIAP--DDPLVNAL-------P 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + L + N + + + G V + L+A Sbjct: 236 LPCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPLVDDLLIALTAAHH 295 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITS 381 +G+ +A + E L+ P R E T I D + + + Sbjct: 296 LGVPAAEMAEVLQDYTFGPTRMETWRTPEGITIINDTASDDPLSVQTALATVAAFPE--G 353 Query: 382 GRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 GR + VFG GD +Q + ++G++A + ++ +P A +G Sbjct: 354 GRRLFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHP----ARSHTAAAWNGCHP 409 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + +M D +++ KG Sbjct: 410 AQAAQELADTAALRERIRQMAEPGDTVLL--KG 440 >gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/11023] Length = 450 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 163/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 452 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 144/398 (36%), Gaps = 29/398 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +L Q + I VS +S I+ +FVAIV DGH FIP A++ GA Sbjct: 3 KSLKQLATQAG-LEYIGEDVSIQTVSINSNEIKQDALFVAIV-ANRDGHDFIPSALSYGA 60 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A++VS + N P +V NT K L A I+++TG+ GK++ Sbjct: 61 KALLVSKKQDI---------NIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + + G L TP + A + Sbjct: 112 VKEMIVTL--LGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFA------------VIETG 157 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + + I+ TN+G H++ +T K L + L + Sbjct: 158 TSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIV--N 215 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D + S+ Q I + I V I + K++ + P G Sbjct: 216 LDDERIPAYADKLDCNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIG 275 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + + N+++A +A ++ L++ + + GRF N + + Y ++ + Sbjct: 276 KHNLSNSMLAIASVVAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGA 335 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK 404 ++ + ++ ++I + GD Q MG+ Sbjct: 336 VQAAIADLAEFDGKKVIAITSMRELGDEGQNYHRKMGQ 373 >gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 417 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 76/411 (18%), Positives = 137/411 (33%), Gaps = 48/411 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + L + +V +D+R G +F+A+ G+ D H +I QA Sbjct: 1 MLQTTTSTIAKILKTDCT--TNVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQ 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA AIV + + Q P LVVD+T+ L+ AS ++A+TG++G Sbjct: 59 MGAVAIVANKPVNNQ---------LPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNG 109 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + I + G + + L T + Sbjct: 110 KTTTKNMLANILNLQAPTLKTQGNLN--NHLGVPMTLLTLE-----------EQHQYAVI 156 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G H + TN HI AK ++ Sbjct: 157 EMGANHLGEIAHLCSLVNPNIAIVTNTLDAHIGEFGGFDNLVKAKGEIYSN--------- 207 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + G + + +++ + Sbjct: 208 ------------NSHNIVNTQDTFTGDVSFGKGGDIFASKLVNNKFDLNIYKQKISVTLN 255 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G + NAL A+ A+GID L+ + LE GR E + T I Y Sbjct: 256 LIGTHNIENALAASTCAYALGIDINLIKQGLEVTKAEHGRLEVINTKKF-RIIDDTYNAN 314 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414 +S LK ++ + +I+V+ G+ + +G++A AD Sbjct: 315 PHSTTTALKALQDFSGEKIVVLGAMRELGNDSEELHLKIGQLAKKSADTFY 365 >gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] Length = 481 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 84/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ I + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTIPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida U112] gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112] gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] Length = 452 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + N V I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF N + + Y ++ +++ ++++ R+ Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEFDGKRV 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 I + GD + MG+ D + Sbjct: 352 IAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385 >gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 479 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 155/485 (31%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + IN++ DSR I AG +F+ + G + DGH Sbjct: 23 MKL------TLHEIAKIVGSKNDVAAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHD 75 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+ + A+ K +++ Sbjct: 76 FIQTAFENGALATFTEKD---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVI 126 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 127 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 172 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 231 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G L K +T S Sbjct: 232 MPDGSLLLVPSDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEFKDHLTFSTNFL 284 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 285 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 344 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y ++++IL+ I G+ I V G++ M A D Sbjct: 345 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 404 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED ++ P ++ +A ++ E L + D ++ Sbjct: 405 TVIF-----YGEDIAELSQLASQIFPLGHVYYFKKTADEDQFDAMVKHIKESLGEHDQIL 459 Query: 464 VAGKG 468 + KG Sbjct: 460 L--KG 462 >gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] Length = 463 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 86/471 (18%), Positives = 158/471 (33%), Gaps = 39/471 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + + S DSR I AG +F A+ G + DGH ++ Sbjct: 1 MKL------TLGQIADWIHAEGDFDSTALAQGYSIDSRTIGAGELFFAVRGERVDGHDYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPE 115 A+A GA A VVS ++ +L V + + + A+R+ + + Sbjct: 55 ETALADGAVAAVVS----MRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGK 110 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 I+ VTG++GK++ + Q+ G + P Sbjct: 111 RIIGVTGSAGKTTTKECIAQVLSAKFHVLKSEGNLNNGFGMPLQLLKLEPE--------- 161 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 V + + + G + + +N+ H+++ Sbjct: 162 ----HEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELV 217 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTIS 294 E LP + AI+ DD K G VL G + ++ + + + Sbjct: 218 EALPADGIAILNGDDERVAAFGK--GMRGRTVLYGTLPGLTVRAVEIEEAGLDGTRFRVG 275 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + G+ L G V NAL A + + GID LE++ R E + + Sbjct: 276 IVGRVQKIHLRLMGRHNVLNALAAVAVGLQSGIDLKDCCLALEQMRPTEKRGEVIERHGA 335 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADI 412 Y +LE +++ +R + R IV+ G + + + IA+ D+ Sbjct: 336 KIINDC-YNSNPRALEAMVEALRKTKATRRIVMAGEMLELGPEGAALHRECGIAMAGMDV 394 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + R + G+ A E L + DV++ Sbjct: 395 VV----GVRGLAASLVEGAESEGVE-ANFVETPEAAGEWLRENLREGDVVL 440 >gi|289612968|emb|CBI59981.1| unnamed protein product [Sordaria macrospora] Length = 88 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 36/76 (47%), Positives = 50/76 (65%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 MG++ AD+AIVTDDN R+ED IRA+++ G P E G+R AIR A +M D+ Sbjct: 1 MGEVVATHADVAIVTDDNSRTEDAATIRAQVLEGAPNATEIGDRRAAIRAACDMAQAGDI 60 Query: 462 LVVAGKGHETVHIVTN 477 +++AGKGHE IV + Sbjct: 61 VLIAGKGHEQGQIVGD 76 >gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Colwellia psychrerythraea 34H] Length = 513 Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats. Identities = 83/407 (20%), Positives = 143/407 (35%), Gaps = 31/407 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW----IFVAIVGNKEDGHL 58 L L+ ELI + E I+++ DSR I+ F+A+ G DGH Sbjct: 6 LTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHR 65 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F Q I QG + ++V S ++T L+V +TR L A+ + + + Sbjct: 66 FAEQVIKQGCQLLIVDHHLSAV-------TDTAQLIVSDTRIALGKIAAFVKKEVAPKTV 118 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG+SGK++V V I R G G + P+ L + Sbjct: 119 GITGSSGKTTVKEMVAAILSRLGKVLATNGNFN----------NDIGVPLTLL---RLDN 165 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S + + A+ G + + N+ H++ AK +F L Sbjct: 166 SHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSG-L 224 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A+ D Y+ + R + R S + K + T+ E Sbjct: 225 GENGVALYNKDTKYTSKWQWRLTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQG 284 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNS 353 +PG+ V NA+ AA + + G + L ++ V GR E T Sbjct: 285 SCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGC 344 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 I Y S + + + + G+ +++ G G+ R Sbjct: 345 NVKLIDDSYNANLESAKAAAQLLSSY-PGKQLLILGDMGELGSEARS 390 >gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta thermophila DSM 6578] Length = 470 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 42/477 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L ++ + P R I V+ DSR + G +FV + G DGHL++ + Sbjct: 6 LPALSLDQLASIVGARLVAPSGER-PPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGE 64 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP-ENI 117 A +GA A +V + SA ++ +LVV +T + L Sbjct: 65 AFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIR 124 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + VTG+SGK+S ++ + + + L + + Sbjct: 125 IGVTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGI 184 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +K T +G H++ T++ K ++F Sbjct: 185 DHVGEMDVLARI------------VKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS- 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + +D V+ F + + + Sbjct: 232 -FDDRSVGFIPEDEEFFHVLVEGWRGTFLPYGPATVEGFEGWESRGLEG------VILLW 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K GE V NAL L +G+ ++V E L+ + GR E G Sbjct: 285 KGLRIPLQGYGEHMVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELK--EIGGVW 342 Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411 VD Y S+ L+ +R + R IVV G GD + +G AD Sbjct: 343 FLVDCYNANPESMRASLEGVRGLKGVRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPAD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E+ E A ++ G G EA + ++ + D++++ KG Sbjct: 403 VVLLV-----GEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLL--KG 451 >gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 450 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 83/464 (17%), Positives = 157/464 (33%), Gaps = 42/464 (9%) Query: 6 LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 L +L++ + + + ++ +++DSR I++G F+A+ G+ +GH FI AI Sbjct: 5 LSLNQLAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA ++V S+ SN P+ +V NT + A + ++A+TG+ Sbjct: 65 EKGAATLIVDQPVSVN-----SSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSV 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G + +N + P + + Sbjct: 120 GKTTTKELIASVLATQGKVHKTLAN--------YNNEIGVPKTLLELDETHNSA-----V 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + G + TN+G HI + +A P S A Sbjct: 167 IEMGMRGRGEIALLAQITRPTIAVITNVGTAHIGRLGS-EAAIAEAKCELLAESPSSSIA 225 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ D E KR L + ++ DF Sbjct: 226 VLNYDHPLLTETAKRVWQGETITYGFSGGDIVGELLDLT----------TLRVNGLDFNL 275 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G N + A + +GID L+ K+++ GR + + + Y Sbjct: 276 PLSGRHHALNFMAALAVAKILGIDW-TSLQEGIKVNLPSGRAKRYQLATDILLLDETYNA 334 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420 S+ L ++ R I V G G + +G+ L D V D+P Sbjct: 335 GLESMLAALDLLKATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDP 394 Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + I F + I ++ I+ D ++ Sbjct: 395 ---EAKFIAEAATAVDCECFQTHADLINRLKEVIDF---GDRIL 432 >gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] Length = 455 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 129/373 (34%), Gaps = 29/373 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + + VS +SR+I G +FVA++G + DGH F+ V A L SA Sbjct: 21 PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLAD---------VTDRASGLVVSSAD 71 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P VV++T L A ++AVTG++GK+SV + I G Sbjct: 72 TDLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAILGGFGTVHA 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +N + P + + S + + +S G + L I Sbjct: 132 TKGNL--------NNHIGVPLTLLDMQQDSDFAVIEMG------ASAGSEISYLCSIAKP 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 S N + A L + AI+ D + E M + C Sbjct: 178 QISLINNVQSAHLEGFGSVEGIAAAKGEIYSGLDTDGTAILNLDQPWQAEWMALIGDREC 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHN-KQQVTIS----VEGKDFDFLFPLPGEFQVYNALVAAG 320 SV I + + + + T+ + + +PG V NAL AA Sbjct: 238 ITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVSNALAAAA 297 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A G ++ LE R + G I Y + S+ + + + Sbjct: 298 CAVAAGASIEQIVSGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVRAAIDVLAS-R 356 Query: 381 SGRIIVVFGCGGD 393 GR ++V G + Sbjct: 357 PGRRVMVLGDMAE 369 >gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] Length = 476 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 137/393 (34%), Gaps = 25/393 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S DSR ++ G FVAI G++ DGH ++ A+ GA +V +D + + Sbjct: 26 EITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAMEAGASVALV-----GEDRLPDLPA 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + +VVD+ + L + I+AVTG+ GK+ ++ SG + Sbjct: 81 DGRYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTGTKEALRLTLAESGKVHASVA 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + P+ LA+ + + + G + ++ Sbjct: 141 SFNNHWGV----------PLTLARMPAD---ADFGVFEIGMNHAGEISPLVKMVRPHVVI 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H+ + + + AK +F+ L P + + + A Sbjct: 188 ITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLAAAAGVSKIH 247 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 HL+K + V + G++ + G+ V N+L + +G Sbjct: 248 TFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLTAVVDLGA 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIRT---ITS 381 D A L+ + GR E + G +D Y S++ L + Sbjct: 308 DLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLGEAPVTRP 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 GR I V G + + ++ + D I Sbjct: 368 GRRIAVIGDMRELGSDADRLHAELLQPITDANI 400 >gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216] Length = 447 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 67/389 (17%), Positives = 121/389 (31%), Gaps = 49/389 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+ +F A+ G DG+ F A+ +GA VV + Sbjct: 42 ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKAD---RL 98 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+ + L A + ILA+TG++GK++ V ++ G + Sbjct: 99 IVVDDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNN 158 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + AS+ G + G TN+ Sbjct: 159 H----------IGVPLTLL---AMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNI 205 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H++ + K L++ L + A+D + Sbjct: 206 GRAHLEGFGGPEGVRRGKGELYDWLARTGGRVFVPANDPVLMSMAAERETLAAECYPTTL 265 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 H + N A + G+D + Sbjct: 266 ADGVEHHLEGDYNRF--------------------------NVAAAVAVGRYFGVDDERI 299 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFG 389 + R + + T + Y +S++ L N R R I++ G Sbjct: 300 RYAVGSYRPDNHRSQKIRTGQNTLILDC-YNANPSSMQASLVNFRQEPLEGCTRKILILG 358 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIV 415 GD + + +A ++ D I+ Sbjct: 359 DMLELGDWSDAEHRHIISLAAEIPDARIL 387 >gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9768] gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/11074] gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9301] Length = 450 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 79/446 (17%), Positives = 161/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ + Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADQFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] Length = 450 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] Length = 457 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + IN++ DSR I G +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+ + A+ K +++ Sbjct: 54 FIQTAFDNGALATFTEKE---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + + G L K +T S Sbjct: 210 MPDGSLLLVPSDPIVDPFLPSNLDVV-------RFGDGAELTVSELTEFKDHLTFSTNFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILTALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y ++++IL+ I G+ I V G++ M A D Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED ++ P I ++ +A ++ E L + D ++ Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKIADEDQFDAMVKHIKESLGEHDQIL 437 Query: 464 VAGKG 468 + KG Sbjct: 438 L--KG 440 >gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 63/412 (15%), Positives = 133/412 (32%), Gaps = 34/412 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E +W + I V DSR I++G +F+ +V DGH ++ Sbjct: 3 MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + +D S I + +L V +T L K ++A+ Sbjct: 55 EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + + P Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + +G L + + + + + + L + Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ K + + + K ++ + Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DF + G + V+NAL A + I + + L + R E++ + + Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALD 408 Y +++ +L + + G+ I+V G G++ + + Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQAINP 384 >gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] Length = 448 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 142/408 (34%), Gaps = 31/408 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ++I+ + ++ S DSR ++ IF+AI G DG +I AI +G+ Sbjct: 7 SKLIQVIDGKIKQKQLEEDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGS 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 I+ SS + + V NT++ L AS L G+ I+A+TG++GK++ Sbjct: 67 SWIITSSKNHKSNR---------CIYVKNTKETLCKIASYLVGEVSPKIIAITGSNGKTT 117 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V I + + + +++ I L L L V Sbjct: 118 TKEMVANILYQHYPKNEILVTKGNLNND-----------IGLPLTLFNLKKNHTIVVLEM 166 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 +H + +L I + + + + + + K AI+ Sbjct: 167 GMNHQDEITKLCKIAPPDIAVITNIGEAHLENFSSKNGIAKAKKEILLGAKKNGIAILPR 226 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD Y + C + + ++V+ + + L G Sbjct: 227 DDVYFNYLKSDCLYLRCISFGINK--------NSNIRLDLSSKVLTVDEEKINIESSLLG 278 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + + N A + A+ + + +++ ++ + + GR E T S I Y +S Sbjct: 279 KENLMNMAAAVSVANALELPTETIIKGMKTIDSIEGRLEVKITASNIKIIDDTYNSNPSS 338 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIA 413 + M + + +I++V G + +G I D+ Sbjct: 339 MMMAIDVLDQFKQKKILIVGDMAELGPLSKKYHTDIGHYILEKNIDLV 386 >gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] Length = 465 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 98/477 (20%), Positives = 178/477 (37%), Gaps = 40/477 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + D I + LI+ + +I ++S DSR I +G +F AI G++ DGH F+ Sbjct: 4 MTVDDFISEIDGRLISG-------NLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ A VV + + + S+ I+ V++T + L A ++ + Sbjct: 57 MDALRAEAVGAVVDNE--QVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + G P+ L + S + Sbjct: 115 TGSTGKTTTKDLVASVLETKFKTLKTEGN----------YNNEFGLPLTLFRLDS---TY 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G + + G TN+G H++ +Q+ AK L E LP Sbjct: 162 EAVVVELAMRGLGDIKTLCQIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVEN-LPP 220 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ DD Y +++ + +S + ++F Sbjct: 221 TGTAILNGDDKYVRQMADETKAEILYYGRESGNNLQASRVD-NLGEAGLKFRVSRQLEEF 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL GE+ VYNAL A G+ + +G++ + + L + + R E I Sbjct: 280 TIDLPLAGEYNVYNALAAVGVGLKLGLNINEIQQGLAEPDLTGMRGEIKELKDDITLIND 339 Query: 361 DYAHTSNSLEMILKNIRTITSGR--IIVVFGCG---GDRDQGKRPIMG-KIALDLADIAI 414 Y S+E L + I + + +I V G G + +G K+ D Sbjct: 340 AYNANPTSMEAGLDLLVDIGTDKGGLIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYL- 398 Query: 415 VTDDNPRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T + S I E G+ + E R ++++ D +++ KG Sbjct: 399 LTVGDLAS----LIGQEAKKLGMDSSRIFICDDNQEINRQLLQLIKPDDTILL--KG 449 >gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 135/370 (36%), Gaps = 20/370 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + VS+DSR I G +F+A+ G + DGH ++ + A+GA A++V + Sbjct: 11 GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVEREVA------ 64 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P L+V +TR L + K + A+TG+SGK++V + I + Sbjct: 65 --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQ---- 118 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G ++ + + P+ L + + + AS G + ++ + Sbjct: 119 --AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHRSAVIELGASRIGEIAYTVELTRP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN G H+ + A E L + A++ DD RA Sbjct: 174 HVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAADGTAVLNLDDKAFDTWKARASGRP 232 Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ + + + L G V NAL AA Sbjct: 233 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 292 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G+ ++ L+ L V GR T S I Y S+ + + SGR Sbjct: 293 ALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGF-SGR 351 Query: 384 IIVVFGCGGD 393 ++V G G+ Sbjct: 352 TVLVLGDMGE 361 >gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 456 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 69/473 (14%), Positives = 150/473 (31%), Gaps = 44/473 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L ++ E +W + I V DSR I++G +F+ +V DGH ++ Sbjct: 3 MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI GA A + +D S I + +L V +T L K ++A+ Sbjct: 55 EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + + P Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + +G L + + + + + + L + Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ K + + + K ++ + Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DF + G + V+NAL A + I + + L + R E++ + + Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415 Y +++ +L + + G+ I+V G G++ + + D D + Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHNNLAQAINPDRIDSVYL 392 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464 E + ++ + + + T L D++++ Sbjct: 393 C-----GELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMSDDIVLL 440 >gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] Length = 481 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 159/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE + A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 VGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] Length = 462 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 85/458 (18%), Positives = 165/458 (36%), Gaps = 40/458 (8%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I E+ L+ + IN +S++S I+ +F+A++G + DGH FI QA+ Sbjct: 1 MILLSVSEISLILNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAV 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA+A++V+ + N P ++V +T L AS L + ++A+TG+S Sbjct: 61 MAGAQAVLVNR---------YVSVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSS 111 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+SV + I + G G + PI L + Sbjct: 112 GKTSVKNMTVSILKNCGTVVSTQGNQN----------NLIGVPITL-----LNLTYQSDF 156 Query: 185 VSVEASSHGL-DQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E S+ L + ++L I N+ H+ ++ ++ K +F L Sbjct: 157 AVIELGSNQLGELNKLSKIVAADVALVNNIFISHLSGFRSLKSIQQEKGEIFSGLACNGQ 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I +A + +C + + +S Sbjct: 217 VVINGDSNAVFMWNSMLQLKKRWWFSIYVKKEMDFFANNICIYPHGVRFILSSPYGVAPV 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD 361 + G V NAL A+ L ++G + + ++ L+ + +PGR + + + + Sbjct: 277 FLSILGRHSVSNALAASALAFSVGANLSEIVYGLQNIQPLPGRLYPILLNDGKLLLLDDT 336 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDR--DQGKRPIMGKIALDLADIAIVTD 417 Y S+ + + + RI+V+ G+R + ++ + I+T Sbjct: 337 YNSNVGSMIEAINVLSVMPGYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILTI 396 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 N I I N+ + IR + Sbjct: 397 GN--------ISYLISKNCKEGKHFHNKNKLIRYLLNN 426 >gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 481 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 157/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + + Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVCPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M644/93/1] gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M13/05/1] gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M490/95/1] gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti B1/94] gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella sp. F5/99] gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] Length = 481 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLSHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. 83/13] gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] Length = 481 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella neotomae 5K33] gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] Length = 481 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli OP50] Length = 262 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 93/262 (35%), Positives = 132/262 (50%), Gaps = 7/262 (2%) Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 TT S + + L+ L QG T ++E SSHGL QHR+ +K A FTNL RD Sbjct: 4 KVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRD 63 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVG 271 H+DYH + Y AK L+ E AII ADD + + + +A ++ Sbjct: 64 HLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPN 121 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G+++ V + + S D + L G F V N L+A +A+G A Sbjct: 122 CHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAD 181 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L+ +L V GR E T + VDYAHT ++LE L+ R +G++ VFGCG Sbjct: 182 LLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCG 240 Query: 392 GDRDQGKRPIMGKIALDLADIA 413 GDRD+GKRP+MG IA + AD+A Sbjct: 241 GDRDKGKRPLMGAIAEEFADVA 262 >gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 455 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 163/477 (34%), Gaps = 46/477 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL E+ L+ + + + DSR ++ G +F+ +V + DGH ++ Sbjct: 1 MKL------TLREMATILNAPIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A + GA + + + + S+ P+++V +T AS + ++AV Sbjct: 54 DAAESNGATVALWQADH------QNVPSHLPVIIVPDTLAAYQQLASHYLSQVDPLVVAV 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G++GK++ F+ I Q S + + L+ P+ L + Sbjct: 108 SGSNGKTTTKDFIAAIGQTSYKTVKTPENFNN-EIGVPQTILSMPTDTELLVIEIGMDHP 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G + +K T +G HI++ +T++ A ++ K Sbjct: 167 GDLTFLSKL------------VKPDIALLTMIGEAHIEFFKTRERI--ADGKMEIINGLK 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 E +++ D +++R + L Q + Sbjct: 213 EHGHLVFNGDE--PLLLERVGQHAHLLHDSFGLNSTNDLFASEIDMTPVQASFKTNQSAQ 270 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G + V NAL A + + I + + L + + R E++ G + Sbjct: 271 RFTIPMTGRYNVTNALSAITVGHLLHISDKKIAQALAEAPITENRTEWLDGQFGGKILSD 330 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRP-IMGKIALDLADIAIV 415 Y + + +L G+ I V G GD +M + D + Sbjct: 331 VYNSNPTAAKEVLHFFADTPTQGKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVYL 390 Query: 416 TDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E+ + + ++ G + ++ + L D +++ KG Sbjct: 391 V-----GEEIKSLEEALLPIYPAGTVKRYAIDDPESLLKDLLADLTSDDTIML--KG 440 >gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] Length = 476 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 88/484 (18%), Positives = 174/484 (35%), Gaps = 56/484 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ L+ + + + V DSR+++ +F+ + G +DGH++I Sbjct: 15 MNLDELLTSTGAWLVYESNSSKA------FSSVVMDSRNVKNNSLFIPLRGENQDGHVYI 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPE- 115 A+ GA+ VV Y ++ +A + + + V N K L A K P Sbjct: 69 EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + +TG+SGK++ + I + + G ++ T P+ + + Sbjct: 129 YKIGITGSSGKTTTKEILASIYSKKYNTVSTKGNLNSE----------TGLPLSVFEVRP 178 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + G + A TN+G HI T+QA K +F Sbjct: 179 E---HEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + + + +K + +S ++ + + + Sbjct: 236 FFKDDS---LGFIPECEFTDFLKDIPHGSVFTVSDNDSSLVQKVEDAGVLGS------KI 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 K + LFPLPG + V NAL+ L G + + LE + + GR + + Sbjct: 287 FYKGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLHGFVTY 346 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLA 410 Y +S++ ++ +I + V+ G + D + I+ A Sbjct: 347 FLDC--YNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAESDYEHKKIIEDALKSNA 404 Query: 411 DIAIVTDDNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464 D D+ I + + + K N+ +A++ E L+K D +++ Sbjct: 405 DNLYFFGDD--------ICSAFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFVLL 456 Query: 465 AGKG 468 KG Sbjct: 457 --KG 458 >gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] Length = 465 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 76/409 (18%), Positives = 138/409 (33%), Gaps = 30/409 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR + G +FV + G + DGH F +A+ QGA A++ S Sbjct: 2 VTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRPLPDVA-------- 53 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+L+V++T + L A+ GK ++ VTGT+GK+S+ + Q+ G ++ Sbjct: 54 APVLLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALN 113 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + T + + S G I+ G Sbjct: 114 HNNQIGMPCTVLNTDGD-------------EDFWVIEAGISHAGDMDELAPVIRPDLGLI 160 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGC 265 N+G H + + ++ L D A + R +AG Sbjct: 161 LNVGPGHTEGLGDRGVAWHKARLLAHLAQGGLGLVSADYPDLVREAGATGAKLRFFSAGA 220 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + + + ++G D + P G + N++ A + Sbjct: 221 HEVEYRADYVGPATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLL 280 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ A + E L + + P RF + Y S+ +L+ GR Sbjct: 281 GLSPAEIAEGLGRAQLPPQRFNRERVGAWEIIDDT-YNANPLSMRRMLETAAGQARGRAF 339 Query: 386 V-VFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 V V G G+ + +G++ DL A+ E + Sbjct: 340 VPVLGEMGELGAVAEALHEELGRLLADLGPSAVFWKGGHADEVRAGLAR 388 >gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] Length = 421 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 61/363 (16%), Positives = 128/363 (35%), Gaps = 27/363 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++D+R +F + G DG+ F+P A+ +GA+ +V S + A Sbjct: 10 KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA------ 63 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV +T L A+ K I+A+TG++GK++ + + +S + G Sbjct: 64 --IVVKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNL 121 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + T + V + A+ G G T Sbjct: 122 NNHLGVPLTLLRLTFE-------------TDIAIVEMGANHPGEIARLCQIADPDFGYIT 168 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N GR H++ + + AK L++ L D++ +E+++ + Sbjct: 169 NFGRAHLEGFGSFEGVIRAKSELYQYLKKDNKCIFFSEDNSLQRELLE------GYEPTY 222 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + K T+++E +F L G + N A + + + Sbjct: 223 SFSLEGREGANLQLSLLKSIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAE 282 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + +E R +FV + Y +S+ ++ + + S +++ G Sbjct: 283 AIRRGVEGYIPTNNRSQFVEKTRGNRVLMDAYNANPSSMHAAIEAFQALPSAHKVLILGD 342 Query: 391 GGD 393 + Sbjct: 343 MKE 345 >gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar Abortus 2308] gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin Cpn60:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus 2308] gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis M5-90] Length = 481 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] Length = 450 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 161/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + H + + A + + + + + K+ A Sbjct: 184 VITYIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276] gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276s] Length = 450 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 77/498 (15%), Positives = 154/498 (30%), Gaps = 59/498 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+++ LI + DSR I G +FVAI G + DGH ++ Sbjct: 4 MSLEEIAQAVQGRLIAGTAAIDTPVATSTFT----DSRQIVEGSVFVAIAGERVDGHDYV 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 + AQGA A +V + P +VV++T L A + P Sbjct: 60 SKVGAQGAVAAIVDHEID--------GAGVPQIVVEDTVLALGALAKHNIERRRALETPF 111 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG+ GK++ ++ + G + +G + P+ K + Sbjct: 112 TVIGITGSVGKTTTKDLMKALLAHIGPTIAPVGSFN----------NEIGLPLTSLKVHA 161 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G + + +G H+ + + AK + Sbjct: 162 ETR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIR 218 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L+P + D+ + + L GK + + + Sbjct: 219 GLVPGGLSVLNANDEHVAAMSAIAPGDVMWFGLPQNNDGKPAISAQHVHCDELDHPSFIL 278 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + D + G +N + A + + + P R Sbjct: 279 DNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMAVSIV 338 Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRP 400 N + + +S++ L + +G + V G G ++ Sbjct: 339 NKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHV 398 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEA----IR 450 +G+ AL+ A++T + + + + G + EA R Sbjct: 399 GIGRYALEGGVDALLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTR 458 Query: 451 TAIEMLNKQDVLVVAGKG 468 A+E V+++ KG Sbjct: 459 LAVEH--PGAVVLL--KG 472 >gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] Length = 473 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 83/451 (18%), Positives = 139/451 (30%), Gaps = 39/451 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R I+ G +FVA+ + DGH F+ QA +GA A +V+ D + Sbjct: 24 TGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQKGASAALVNHVPDGMDAAK------ 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LVVD+ L + + ++A+TG+ GK++V ++Q G + Sbjct: 77 -CLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVKDMLKQALSGQGKIHAAVASY 135 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + S+ G + T Sbjct: 136 NNHWGV----------PLTL---SRMPVDTDYAVIEIGMSAPGEIAPLSRMARPHVAMIT 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H++ + K +FE L P + + +A V Sbjct: 183 TIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAAVAHAAEVVTFG 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +G + L V + + I+ + + G NA+ A G D+ Sbjct: 243 EAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAVAASGADTT 302 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIY----VDYAHTSNSLE-----MILKNIRTITS 381 L V GR + +D A +N +L I Sbjct: 303 QAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVLAAITPERG 362 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 GR I V G GD + + A + T + G Sbjct: 363 GRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCG-----PLMVHLDAALPGAKR 417 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468 + R L DV++V G KG Sbjct: 418 GEHTETAQDLCRAVPRTLRPGDVVLVKGSKG 448 >gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 465 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 85/471 (18%), Positives = 154/471 (32%), Gaps = 33/471 (7%) Query: 6 LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ E+ + + + +S+DSR IQ G FVA+ G + DGH FI A+ Sbjct: 1 MLTATVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGT 123 + A +R ++ VD+T L A+ K ++ VTG+ Sbjct: 61 SG--GAAAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGS 118 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK++ + + + G + P + + + Sbjct: 119 SGKTTTKNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAP------WHQAAVVEMAMR 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 AS + + G TN+G H+ + A LP E Sbjct: 173 GKGEIASLAAIA-------RPTIGVITNIGTTHLGLLGSIANIA-AAKGELLAALPAEGL 224 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ D+ + + + + G + + T GK+ Sbjct: 225 AVLNGDNEWCRRLAATCPCRVVFFSTRGQGEIYARDIGDRGLEGTF-FTAVFPGKEVRVQ 283 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+PG V +AL A + ++G++ + L R + Y Sbjct: 284 LPVPGRHNVEDALAALAVGFSLGVEPETMARSLADWPAEDLRQDLRPGPGGSLVFNDAYN 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+E L+ + + GR + V G G + +G+ A ++T Sbjct: 344 ANPESMEAALQALGAL-PGRRVAVLGAMLELGPAEVELHRRVGRFAAARGLYRLITV--- 399 Query: 421 RSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +I A + G+P EA + L DV++ KG Sbjct: 400 -GELAGEIAAGALEAGMPADQVFACLTHEEAAGH-LRGLGHGDVVLF--KG 446 >gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] Length = 458 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 83/393 (21%), Positives = 141/393 (35%), Gaps = 29/393 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + + + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVGLTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA+ S+ H + + + Sbjct: 219 GTAVLNLDDKAFATWKARANGRPLLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 339 SYNANPASMLAAIDILGGF-SGRTVLVLGDMGE 370 >gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] Length = 471 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 86/482 (17%), Positives = 156/482 (32%), Gaps = 45/482 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + + ++ S DSR + AG +F A++G + DGH F+ Sbjct: 1 MKL------TLGQVADWIHAEGEFVSTDEVVGYSIDSRTVGAGELFFAVMGERFDGHEFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPEN 116 A+ GA A VVS ++ + +L V + L A + Sbjct: 55 KTALEAGAVAAVVS----MRWVVSAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGR 110 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ VTG++GK++ V + G + P+ L Sbjct: 111 VIGVTGSAGKTTTKECVAAVLAAKFKVLKSAGNLNNHFGV----------PLQLL---RL 157 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V + + + G + +N+ H+++ + + Sbjct: 158 EKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVD 217 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP A + A D H A LS + + +K V + V ++ Sbjct: 218 ALPAAGVAFLNA-DDVFVSTFGEGHEARMFGLSETADVRGVEVKNVGLEGMQFVVQVTAR 276 Query: 297 GKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 GE VYNAL A + + G+ + L+ + R E + Sbjct: 277 EGRVADKMRARIALLGEHNVYNALAAIAVGLESGMTLGECVFALDSVVPSDKRGEMIEW- 335 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 I Y +LE ++ + I GR IV+ G + Q + +A Sbjct: 336 HGARLINDSYNSNPRALEAMVDALMAIEGGRHIVIAGEMLELGQDAGKLHAASGRQMAKR 395 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466 + AE + G+ + EA L + DV+++ A Sbjct: 396 G------VDVVVGVRGFAESLAGVAKMSGAEALFVKTPEEAGAWMKANLREGDVVLLKAS 449 Query: 467 KG 468 +G Sbjct: 450 RG 451 >gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] Length = 481 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHLTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 451 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 157/420 (37%), Gaps = 39/420 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ EL L + + I VS+D+R + AG +FVA+ G + D H F Sbjct: 2 MTLR------LAELAQVLDARLIG-EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFC 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+A GA A++V L P LVV ++ K L + + +LA+ Sbjct: 55 EQAVAAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGRLVRERINPKVLAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V I ++ G G + P+ L Sbjct: 106 TGSCGKTTVKEMATAILRQEGDVLATAGNFN----------NEVGVPLTLL---RLEPQH 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G K A N+ H++ + + F+A E L + Sbjct: 153 RFAVMELGANHPGEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHA-KSEIFEGLGE 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ AD+ + + R + + F V + + + Sbjct: 212 GGTAIVNADNEFWPKWQARGIHCA--FSIEDQRQPFHARNVVINQQGCAEFVMVTPQGEI 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG V NAL AA +A+G A V LE + V GRF G + Sbjct: 270 SLTLAIPGRHNVANALAAAAGTLALGASLASVKAGLELMAPVKGRFCVQRWG--GLTLVD 327 Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 D Y + S+ + + + SG ++VFG G+ + +G+ A + A++T Sbjct: 328 DTYNASVESVLAGIDALTAM-SGYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVLT 386 >gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] Length = 447 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 141/391 (36%), Gaps = 38/391 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN 89 + +S+D+R I+ +F A+ G +G+ F QA+ GA A++ Y L+D + Sbjct: 32 DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT------ 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V++ + L A +LA+TG++GK++ + + + ++ G Sbjct: 86 ---ILVEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGN 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ L S + + V + A+ G G Sbjct: 143 LNNH----------IGVPLTLL---SMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYI 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ + Q K L++ L+ + + DD E + + Sbjct: 190 TNFGKAHLEGFGSVQGVIKGKSELYDYLIAHKGTLFLNLDDPIQAEKL---------GST 240 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + +++ Q + + + L G++ N AA + I + Sbjct: 241 HTFCFSAHQETDLNIVYHTAQPFANFQFDEITVNSNLMGQYNTINLAAAAAIGTFFKISA 300 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 + E LE R + + N I Y S+E L+N + G I Sbjct: 301 EDIKEALEAYVPKNNRSQII-NNGDQTIILDAYNANPTSMEAALRNFAGLERQGPKIAFL 359 Query: 389 GCG---GDRDQGKRPIMGKIALDL-ADIAIV 415 G G+ + + +A L D I+ Sbjct: 360 GDMFELGETSAYEHQFIANLAAQLDIDHLIL 390 >gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 483 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 160/453 (35%), Gaps = 41/453 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + QW++ ++ VS DSRH++ G +F+ + G DGH ++ Sbjct: 27 MKLAEIAKAINAQ------NEIEQWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYV 79 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A + +S + L + + P+LVV + K L K ++AV Sbjct: 80 ETAFTNGAAATLWASDHELTN------NGHPVLVVTDPLKALQQLGKYYLHKINPIVVAV 133 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + P+ L + + Sbjct: 134 TGSNGKTTTKDMIASILSTQLNVTKTYANFN----------NEIGVPVTLLNMEA---NT 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V V + G L + + + + + L + Sbjct: 181 EVVVVEMGMDRFG-QLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKE 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ E + R ++ V A ++ E D Sbjct: 240 DGLLVYDGDEPLLNERAAKVAQQTSRFGRQLTDD--LYATSVTAGPRSISFKVN-EWPDE 296 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ GE+ V NAL A + + I A + L + + R E+ + + + Sbjct: 297 QFTIPMVGEYNVNNALAAMVVAKRLHISPAHIKTALANVELTENRAEWFKSKNGAQILSD 356 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK + + GR I V G +G A L ++ T+ N Sbjct: 357 VYNSNPTAAKQVLKTLAAMPVQGRRIAVLGDML--------ELGDAAPRL-HASLATEIN 407 Query: 420 PRS-EDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 P ++ I E++H +E+G AI Sbjct: 408 PAQIQEVYLIGTEMVHLQSKLLEQGYPATAIHY 440 >gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] Length = 449 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 81/419 (19%), Positives = 149/419 (35%), Gaps = 35/419 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ + +I+ VS+DSRHI +FVA++G + D H FI Sbjct: 1 MLLSEIAKACDGRLVG---------ADCQISSVSTDSRHIDEQGLFVALIGERFDAHDFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P QGA A++VS + P ++V +T+K L L A ++ A+ Sbjct: 52 PAVQEQGATALLVSKEVD---------TTLPQVIVSDTQKALGLIAKHVHQVCHTFTFAL 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V + I RSG G + + PS + L Sbjct: 103 TGSCGKTTVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQN 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +++ + A + N+ H++ + + AK +FE L + Sbjct: 163 EISYTTQLA-------------QPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LKE 208 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299 AI D + ++ + + + ++ Sbjct: 209 NGIAIYNLDSNGLPKWSSLFEGKQVVSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGS 268 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G+ V NA+ AA L I + + L++L V GR S I Sbjct: 269 IQVSLGIIGKHNVANAVAAAALAIQANSSLNDIQQGLQELGSVKGRVAVETLASGLKVID 328 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 Y + +++ ++ + R +V+ G+ +G+ A +VT Sbjct: 329 DTYNASVPAMKAAVELLGGFKGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT 387 >gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 503 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 157/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+A GA ++V + P +VV+NT L+ A+ + +LA+ Sbjct: 55 AEAVACGASGVLVDR--------LLPALSVPQVVVNNTELALARIAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + ++ Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + + + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + V G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + V GR + T G Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR-QIAQTLPNGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] Length = 449 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 89/484 (18%), Positives = 178/484 (36%), Gaps = 50/484 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +L + + N + +R + V +D+R G +++AI G+ DGH ++ Sbjct: 2 LVELKLSEIASICNGSLL----GEDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLET 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A++ ++ P+++VD+TR+ + A L ++A+TG Sbjct: 58 ALKNGALAVLSQQDSQVR----------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+++ ++ Q + P+ L + Sbjct: 108 SNGKTTIKEWLSQCLAERVKVLKTEKNNNNQ----------IGVPLTLLGLKKEHQVAVI 157 Query: 183 THVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + L Q I +N H + + + L E Sbjct: 158 ETGTSFVGEIAKLAQITTPDI----AIISNASGSHYEGFGSIEGIAKE-KGALLTGLTAE 212 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI+ DD + + C G G + K+V + + +G+++ Sbjct: 213 GVAILNHDDPWFDYWVGLLDKRACVSFGFGS-GADLVAKQVELFSQSSKSILCYQGEEYV 271 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 +PG+ QV NA+ + +G+ E L + V+ R EF NS+ + Sbjct: 272 LHLAVPGKHQVANAMAVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDC 331 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + S+E + + + + G+ +V G G+ ++ +G+ A A + + Sbjct: 332 YNASPKSVEAAIDVLMSQSQGQKWLVLGALGELGELEEKIHQQLGEYAA-FAGVTGLISV 390 Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HETV 472 P I A+ G + N ++A I+ L K++ ++V KG E Sbjct: 391 GP----IAAIAAKAYEERGGVAVYCENNLQAAEF-IKPLGKENAILV--KGSRSAQME-- 441 Query: 473 HIVT 476 I+ Sbjct: 442 QIIK 445 >gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] Length = 477 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 83/473 (17%), Positives = 164/473 (34%), Gaps = 50/473 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M D + L + + I V +DSR ++ +FV ++G +DGH ++ Sbjct: 1 MNENDSLLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI-----RSNTPILVVDNTRKFLSLFASRLYGKHPE 115 PQAI +GA + +S + + + + + V+NT + L A+R K P Sbjct: 61 PQAIEKGASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPH 120 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + VTG+SGK++ + I + G ++ T P+ + Sbjct: 121 LIKIGVTGSSGKTTTKEILVSILSQKYKVISNKGNLNSE----------TGLPLSVFNIR 170 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + + +K TN+G HI +++ K ++F Sbjct: 171 AE---HECGVFEMGMNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + I DD +S + G V ++ + K + Sbjct: 228 SYFGGFGTGVIP-VDDEFSDFLKNE--IDGKVVFYGNDTDSVKYICDMGLKGTKFSID-- 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + PLPG++ +AL A L +G+ S + + + L + GR E + + Sbjct: 283 ----GIETILPLPGKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSEILDGKNF 338 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 Y +S+E ++ + + D K ++G + +D Sbjct: 339 LIMQDC-YNANPDSMEKAIE-----------FIGSVKKEADAKKIFVLGDMLELGSD--- 383 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVAG 466 +S + + + I G A + A K ++ +AG Sbjct: 384 -----SKSAHEKTGLLAVNSDVDLVIFIGTEMKAAFKKAKNSSEKN-IIFIAG 430 >gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cytophaga hutchinsonii ATCC 33406] Length = 426 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 74/442 (16%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++D+R ++ G +F A+ G +G+ F A+ GA +VV A +QD Sbjct: 14 RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQDD-------- 65 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VD+ L A+ ILA+TG++GK++ V + + + +G Sbjct: 66 RYVLVDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNL 125 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + S V + A+ ++ G Sbjct: 126 NNHIGI----------PLTLL---AMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLIN 172 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + K L++ L A I + + + E+ + Sbjct: 173 NVGKAHLEGFGGFEGVKKGKGELYQYLFETNGIAFINSKNEHLMEM--------SPFEAP 224 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G+ + + V ++ L G++ N L A + G+ S Sbjct: 225 VLYGRNSDFYNAKFLKSDPFVAFIAGNEEL-VETKLVGDYNFDNILAALCIGKYFGVPSI 283 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + +E+ R + V T + I Y S+ ++N ++ +V+ G Sbjct: 284 AANQAIEQYDPTNNRSQIVKTE-KNEVILDSYNANPTSMRAAIENFASLQKENKVVILGD 342 Query: 391 G---GDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G+ + + +G + L D I+ N A + Sbjct: 343 MYELGEESEVEHANIGALLNLLTDTKIILIGKN---------MAAASKECTAAAYMDTKE 393 Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468 A+ + +++ KG Sbjct: 394 AAVNFLVSNQILNSTILL--KG 413 >gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 242 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I ++ + L + + ++ V +D+R + G +FVA+ G + D H F +A A Sbjct: 10 MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 68 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + + P ++V +TR+ A+ + + P ++A+TG+SG Sbjct: 69 NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 119 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST 152 K+SV I + G + + + Sbjct: 120 KTSVKEMTAAILSQCGNTLYTASNFNN 146 >gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] Length = 458 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + ++ + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA S+ + + + Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370 >gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 456 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 86/499 (17%), Positives = 155/499 (31%), Gaps = 76/499 (15%) Query: 1 MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M+L F E+ + L Q+ + +V DSR I G +F + G + DGH Sbjct: 1 MQL------TFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHG 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + + P ++VDN L A K ++ Sbjct: 54 FIVTAFENGAAATLSEKELD----------DYPYILVDNVLAALQRLAQYYLEKMKVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E + L + Y AK ++ Sbjct: 156 -------VLEMGQDHMGDIHLLSTIAQPKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ ++ D + + N G + K ++ Sbjct: 209 MKDGTLLVVPADKIINDFLPSQLNVV-------RFGPDEDIFLTKLEERKDSLSFETNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA++AA + + G+ + + L + R E+ + + Sbjct: 262 DNAIDLPVTGKYNATNAMIAAYVALKEGVTQDKIQKAFATLELTRNRTEWKKAKNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + + + Sbjct: 322 SDVYNANPTAMRLILETFSTIPFNEKGRKLAVLADMKELGVDSKQMHSAM---------I 372 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 T NP +I +EI F+ + A E+ GK H + V Sbjct: 373 TSLNP------EILSEI------FLYGEDMAALFAYAKEIFPP-------GKAH---YFV 410 Query: 476 TNGEKKMSVD-CDIIREIL 493 N EK D ++E L Sbjct: 411 KNAEKDQFSDLVKAVKEAL 429 >gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] Length = 470 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 79/411 (19%), Positives = 143/411 (34%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + I +S+DSR G +FVAI G++ D H F+P + A++V+ Sbjct: 15 GATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVTR--- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 N P L V +TR L A + ++AVTG++GK++V + I Sbjct: 72 -----TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + ++ ++ P+ L ++ + V + + G Sbjct: 127 AAVGADARLATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETSEL 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L E A+ ADDAY+ Sbjct: 177 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALSPEGVAVFPADDAYASIWRV 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ + V ++I + + G+ +NAL A Sbjct: 236 AATGNRIMDFALNSAERTTEA-AVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374 +A G+ + LE V GR + + G + D Y +S+ + Sbjct: 295 TSAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + + R++V+ G GD +G A D D R Sbjct: 355 VLASRPAPRVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASRD 405 >gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] Length = 454 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 26/406 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + + ++ I+ VSSD+R + G +F+A+VG + D H F+ A GA A++VS Sbjct: 9 LQDVLNAELIGQDVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQNGASALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + P LVV +T+ L + + + +A+TG+ GK++V + Sbjct: 69 KVVDI---------DLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTVKEMLA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G + TP + + A+ G Sbjct: 120 AILSQKGQTLYTAGNFNNDIGVPLTLLRLTPF-------------DDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + +K TNL H++ + AK +F+ L + + Sbjct: 167 IAYTTSLVKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDF 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + G + + + + LPGE V N Sbjct: 227 WTPALEGKQVLTMTVTGKPADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVAN 286 Query: 315 ALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 A++AA I + V+ L + V GR I Y + +++ Sbjct: 287 AVLAAIAATKIDSRVTMDDVVRGLGSVSPVKGRGAISFPRPGLRLIDDSYNASLAAMKAA 346 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + + + +IIV+ G+ + + + ++T Sbjct: 347 VDLLDSFDGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLT 392 >gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] Length = 483 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 81/494 (16%), Positives = 152/494 (30%), Gaps = 56/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ LI SDSR G +FVAI G + DGH F+ Sbjct: 4 MSVEEIAKAVDGRLIGDADSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 + QGA +V P +VV +T L A + Sbjct: 58 AKTAEQGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDF 109 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+ +TG+ GK++ + + G + +G + I L Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V+ +SH + RL I + + Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293 + L A++ ADD + + A Q + V A + + + Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 +G +PG V NAL AA + + G+ V + + P R N Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335 Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401 G + +S++ L ++ S + + G G + Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTS 395 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456 +G A +L AI+ + + + + + + G + A + +++ Sbjct: 396 IGTYAAELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLA 455 Query: 457 N--KQDVLVVAGKG 468 V+++ KG Sbjct: 456 RNHPDAVVLL--KG 467 >gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] Length = 470 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 75/411 (18%), Positives = 135/411 (32%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + +S+DSR G +FVAI G++ D H F+P A+ A + S Sbjct: 15 GSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAALASR--- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 N P L V +TR L A K ++AVTG++GK++V + I Sbjct: 72 -----TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + ++ ++ P+ L ++ + V + + G Sbjct: 127 AAVGADARLATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETSDL 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A + L P+ D + + Sbjct: 177 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGIAVFP--ADDAYASIWR 234 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + + V ++I + + G+ +NAL A Sbjct: 235 VAATGNRIMDFALNSAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374 +A G+ + LE V GR + G + D Y +S+ + Sbjct: 295 TSAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + R++V+ G GD +G A D D R Sbjct: 355 VLAPRPAPRVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASRD 405 >gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] Length = 452 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V N K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N V I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF N + + Y ++ +++ ++++ R+ Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEFDGKRV 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 I + GD + MG+ D + Sbjct: 352 IAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385 >gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 143/393 (36%), Gaps = 20/393 (5%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 +++ ++ ++ V +DSR I +FVA+VG + D H F+ A G A ++SS Sbjct: 20 VNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISS-- 77 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++ P + V NTR L A HP + VTG++GK++V + I Sbjct: 78 -----QDKCPADLPAICVSNTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIF 132 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + + + +++ P+ L K S + V + + G Sbjct: 133 KAAVGEQHTLVTKGNLNNDI-------GLPLTLLKLRSTDR---LAVVELGMNHPGETAQ 182 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + N R+H ++ T A LP + AI AD ++ Sbjct: 183 LAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAIRT-LPSDGVAIFPADSEFAGVWR 241 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + A + + + V I E + G V NAL Sbjct: 242 QAAAGRKVIDFVLSSAQTKASAAVTGCLLSNGLVQIKSEQGTIEVQLNTLGSHNVRNALA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A+ + IA G+ + + LE V GR + +S I Y +S+ + + ++ Sbjct: 302 ASAVGIAAGVSLEKIKQGLESFSPVNGRMQAKAIDSSRTLIDDSYNANPDSVRVAIDALK 361 Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + +++ G G++ +G A + Sbjct: 362 QSGNLSWLILGDMGEVGNQGPEFHREVGAYAAE 394 >gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus clausii KSM-K16] Length = 453 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 67/400 (16%), Positives = 133/400 (33%), Gaps = 28/400 (7%) Query: 9 KDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K L+ ++ +R+ + VS+D+R +FV + G + DGH FI QAI G Sbjct: 2 KIDASLLKSIAKGSRLKEDRRGFSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A + + + + V++T K L A K ++ +TG++GK+ Sbjct: 62 ATGALW---KEQEPVPEQLPETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + V + + G + P+ L + V + Sbjct: 119 TTKDIVASVLAGTAAVHKTKGNLNNH----------IGVPLTLL---AMPEDCTYAVVEM 165 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + H + L I + D H + A + L KES + Sbjct: 166 GMN-HAGEISTLTQIAKPNAAIITSIGDAHIEHLGSREGIAAAKMEIADGLIKESWLLFD 224 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ ++ + G + + + + Sbjct: 225 GDEPLLSPYNEQ---------AETTVGFSDQAATKISDVKTLENGYVFYLNGARWQLTML 275 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+ V NA A L +G +A++ + L L + R E + + I Y Sbjct: 276 GKHNVKNAAYAILLAQKLGFSNAMIQKQLSSLAITGMRLEKLKGPNGSTIINDAYNANPT 335 Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406 S++ ++ ++ + R ++V G + Q + + +A Sbjct: 336 SMKAAIETVKELPHYKRRVLVLGDIYELGQDEEALHKSVA 375 >gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 79/440 (17%), Positives = 149/440 (33%), Gaps = 55/440 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL + E+ + + + ++ DSR I+ G +F+ + G + DGH Sbjct: 1 MKL------NLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A P ++VD+ + AS K +++ Sbjct: 54 FIETAFENGAVATFSEREVE----------GHPYILVDDCLEAFQALASYYLEKQRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G + L P Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNEIGLPY-TALHMPDDTEKIVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E + + L G H+++ +++ AK +L Sbjct: 163 HMGDIHLLSELAKPHIGVVTLIG------------EAHLEFFGSREKI--AKGKLQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D+ + + G + +K +T + Sbjct: 209 MDSDGILIAPVDSIVDPYLPESQMVI-------RFGDGAEIFVKDLQESKDSLTFTTNVI 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+PG++ NA+VAA + + I ++E LE + + R E+ + + Sbjct: 262 DRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDLA 410 Y ++ +IL+ I G+ I V + + KR IM ++ + Sbjct: 322 SDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPETL 380 Query: 411 DIAIVTDDNPRSEDPEKIRA 430 D I ED ++ Sbjct: 381 DTLIF-----YGEDIAELAQ 395 >gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 503 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 155/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G +++A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV+NT L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVDR--------LLPALSVPQVVVENTELALARVAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDNADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373 >gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 30/407 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F EL+ L + + + + VS+DSR IQAG +FVA+ G + DGH ++ Q A+GA Sbjct: 6 TFAELLVPLDARRVGG-DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAAKGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSS 128 +V + P LVV +TRK L+ + + + AVTG+SGK++ Sbjct: 65 GALVEREVE--------GATLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + I + G G + P + + Sbjct: 117 VKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE-------------YTSAVIELG 163 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 AS G + + K TN G H+ A E L A++ Sbjct: 164 ASRVGEIAYTVSLTKPHVAMITNAGSAHVGEFGGPDKIVEA-KGEILEGLDATGTAVLNL 222 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLP 307 +D KRA N ++ ++ + T++ L Sbjct: 223 EDKAFPIWRKRAGNRAVLTFALADTAADLYASDLSRDARGCPGFTLNSPLGKAQVQLNLL 282 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G V NAL AA A+G+ ++ L + V GR ++ I Y Sbjct: 283 GAHNVTNALTAAAAACALGVSLEGIVTGLNNVQPVKGRAVAQIASNGVRVIDDTYNANPA 342 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 343 SINAAVDVLTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] Length = 480 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 34/456 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ +S DSR +FV ++G K+DGH FI A+ QGA A+ S + Sbjct: 23 SGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEE 82 Query: 83 SATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + VD+TR+ L + + + ++ +TG+ GK++ V Sbjct: 83 VKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA 142 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ P+ L++ + + + + S G Sbjct: 143 GFHVFKTPANHNSQ----------VGVPLTLSQISD---TDEIGVLELGMSEPGEMTVIA 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + TN+G HI+ T++ K+++ + + + +D + R Sbjct: 190 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG---ISR 246 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A V + + T+ + + GE V NAL A Sbjct: 247 AREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAAL 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378 + G+ E L + R + +G + D Y + +S++ L+ + + Sbjct: 307 AVADYNGVPLEAAAEKLREFTGFKNRQQIR--EKQGITVIDDTYNASPDSMKAALRVLSS 364 Query: 379 I-TSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R + V + +R +G+ +VT E +I Sbjct: 365 FGQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARE 420 Query: 435 GIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKG 468 P +R + L+ D ++ KG Sbjct: 421 RRPSLQTAAFTDREKMTEFLKRELSAGDCVLF--KG 454 >gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Clostridium cf. saccharolyticum K10] Length = 476 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 34/456 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ +S DSR +FV ++G K+DGH FI A+ QGA A+ S + Sbjct: 19 SGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEE 78 Query: 83 SATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + VD+TR+ L + + + ++ +TG+ GK++ V Sbjct: 79 VKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA 138 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ P+ L++ + + + + S G Sbjct: 139 GFHVFKTPANHNSQ----------VGVPLTLSQISD---TDEIGVLELGMSEPGEMTVIA 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + TN+G HI+ T++ K+++ + + + +D + R Sbjct: 186 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG---ISR 242 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A V + + T+ + + GE V NAL A Sbjct: 243 AREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAAL 302 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378 + G+ E L + R + +G + D Y + +S++ L+ + + Sbjct: 303 AVADYNGVPLEAAAEKLREFTGFKNRQQIR--EKQGITVIDDTYNASPDSMKAALRVLSS 360 Query: 379 I-TSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R + V + +R +G+ +VT E +I Sbjct: 361 FGQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARE 416 Query: 435 GIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKG 468 P +R + L+ D ++ KG Sbjct: 417 RRPSLQTAAFTDREKMTEFLKRELSAGDCVLF--KG 450 >gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella copri DSM 18205] Length = 433 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 125/377 (33%), Gaps = 21/377 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR G IF+A+ G DG+ F A+ +G ++V ++ Sbjct: 16 ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYVIVDEKEYAKEGEER------Y 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++ A + V G +G + + + + G + Sbjct: 70 ILVEDCLTTFKELAREHRRHFD---IPVVGITGTNGKTTTKELVSAVLGEKFNVMFTQGN 126 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + + V + AS G + ++ ++ G TN+ Sbjct: 127 FNNDVGVPKTLFRLSPE----------NEIAVVEMGASHPGDIRKLVEYVEPTCGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L ++ I AD+ + ++ ++ + Sbjct: 177 GRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADNEHLMQMAEQRNINRLITYGKDE 236 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 CA K + + + L G + + N L A + + + + Sbjct: 237 NCDVWGEVISCAPFLKFRWR-TESFDWHEVQTHLIGSYNIDNMLAAITIGLHFDVKPQQI 295 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 LE R + + + Y +S+ ++N R + + + G G Sbjct: 296 DHALENYIPSNNRSQLE-ETAHNKLVVDAYNANPSSMAAAIENFRMMDVPHKMAILGQMG 354 Query: 393 DRDQGKRPIMGKIALDL 409 + + K+ L Sbjct: 355 ELGEVSHEEHQKVVDQL 371 >gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis bv. 3 str. 686] gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] Length = 481 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] Length = 463 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 92/444 (20%), Positives = 156/444 (35%), Gaps = 32/444 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ + A + + Sbjct: 24 VSGVAFDSREVTQGDLFVAMKGEATDGHRFVD-----------QAFAQGAAGAIVSDAVD 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V ++ L + ++ VTG+ GK+ + R+ Sbjct: 73 HPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKTGTKEALYLALDRAA-------- 124 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + G ++ A Sbjct: 125 PGQAHRSVKSYNNHVGVPLSLARMPRDSA---YGIFEMGMNHAGELSALTHQVRPHAAIV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + HI++ T+ AK +FE L + AII D + + +A R+L+ Sbjct: 182 TAIAPAHIEFFGTEAKIAEAKAEIFEG-LEPGAAAIIPYDSPHVATLYNKAERHAARILT 240 Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G Q L+ V A + VT + + F PG+ V NAL A+G Sbjct: 241 FGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALAVLAAVEAVGG 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384 D A L ++ +PGR E GG + Y S+ LK + + R Sbjct: 301 DLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAATLKQLGREHADRR 360 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 I V G + + +A LAD AI +E A+ + G + + Sbjct: 361 IAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAE--MAPLADALEGTMAYAHVPD 418 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468 AI + + D ++V KG Sbjct: 419 AASAIPLIKKEMRAGDAILV--KG 440 >gi|297521715|ref|ZP_06940101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli OP50] Length = 91 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD+A+VTDDNPR+E+P I +I+ G+ R EA+ A+ + DV++VA Sbjct: 1 FADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 60 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKGHE IV N D + +LG+I Sbjct: 61 GKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 90 >gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 438 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 82/457 (17%), Positives = 153/457 (33%), Gaps = 56/457 (12%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ER I ++ DSR G +FV I+G +DGH FI A+ +GA A++ S + Sbjct: 9 FDERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKK- 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 V +TR L + ++ VTG+SGK+++ S + Sbjct: 68 --YPEVRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVF 125 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G ++ PI L + + + + + S G + R+ I + Sbjct: 126 QTAGNANSQ----------LGVPITLFQLARSGA--EIAVLELGMSEPG-EMTRIASIAR 172 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + TN+G HI+ +T++ K+ + + + +D + + + Sbjct: 173 VDLALITNIGTAHIENLKTKENILLEKLH-ILDGAADGAALYLNGEDPLLASLTEERIHD 231 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 I ++V + + + G NA A + + Sbjct: 232 -------------------LGISLGKRVELHFYRAEEEIPLSAAGHHMQQNAAAALAVSL 272 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ VL L + GR E + + S G + Y + ++L+ L + R Sbjct: 273 DLGLQREGVLRALRGFSGLKGRGEKLLSRSGIGILDDSYNASPDALKASLLVLSKEKGRR 332 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 I + G+R + G L D ++ E I I Sbjct: 333 KIALLSDMLELGERSEELHEDCGAFLSSLPIDRVLL-----YGEKSLGILRGIRREEKRR 387 Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 N E R + D+++ KG Sbjct: 388 GDGRQIPVSHFSNAEELYRELLREAAPGDLVLF--KG 422 >gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri] gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] Length = 459 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 163/470 (34%), Gaps = 37/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + QW++ ++ VS DSRH+ G +FV + G + DGH ++ Sbjct: 3 MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A GA A + +S + + D + P+LVV + L K ++AV Sbjct: 56 PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + P+ L S + Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVAKTYANFN----------NEIGVPVTLLNMES---NT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G L + + + + + L + Sbjct: 157 EAVVVEMGMDRFG-QLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ + +R + R + G Q +Q E D Sbjct: 216 DGTLVFNGDEP---LLEERVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ GE+ + NAL A + + I A + + L + + R E+V + + Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK I GR I V G + + +A ++ D + Sbjct: 333 VYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIASVY 391 Query: 420 PRSEDPEKIRAE-IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + ++ + I G P + + I L D++++ Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIYHYAASDLQQLIADLTTTLTGDDIVLL 441 >gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] Length = 481 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] Length = 456 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 72/411 (17%), Positives = 141/411 (34%), Gaps = 30/411 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ K+ + + +++ V+ DSR IQ +F+AI G + DGH+FI Sbjct: 1 MK--NMTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ+I GA V + P ++V++ + L A ++ + Sbjct: 59 PQSIHDGALCAVSEKRIESASY--------PYIMVNSCAQALKDIAEHYRRSLRLKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + + + G + P+ + Sbjct: 111 SGSVGKTSTKEMIASVLGQKYNVLKTEGNFN----------NEIGLPLTIFNIREE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G + + TN+G H++ ++++ AK +F + PK Sbjct: 158 EVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPK 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + DD + L ++ + +F Sbjct: 218 GDIILNGDDDMLASVTPANHIEPVFFGLDPALAYSAEDIENLGLKG--TSALFHTPDSEF 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG VYNAL A + +G++ + + +E L + GR + T Sbjct: 276 GAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGIESLVPLAGRNNLIETEFLTIIDDC 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 Y S++ L + G + + G G + G+ A + Sbjct: 336 -YNANPASMKASLDVLSK-AKGHTVAILGDMFELGPKAHEMHCETGEFAAE 384 >gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 143/395 (36%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + AS G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ ++ AK ++ +LP + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A +S G ++ V + ++ P GE V NA A Sbjct: 245 AKAHRISTFGVGGDVYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +AIGI +++ LE+ GR F+ + I Y S+ + + Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGV 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D I Sbjct: 364 KVMVMGDIGELGDSSWQEHYDLGRDLAELPLDHII 398 >gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 461 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 179/466 (38%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L + + +++ + + QW + IN + DSR + +G +F+ + G K DGH FI A + Sbjct: 3 LTFWEIADVVQATNNW-KQWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARS 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA+A + S S+ PIL V +T K + A K ++AVTG++G Sbjct: 61 QGAKAALWSKE------SSLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNG 114 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + + ++ G + L + + + + Sbjct: 115 KTTTKDMIAAVLAKKYITYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFL 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S AS + T +G HI+ ++Q AKM + + L+ Sbjct: 175 SQLAS-------------PTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLI- 220 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ++ ++K + + + + K + T + G F P Sbjct: 221 ----IPENEPLLKPLTANSTQTIKTFGFTNEADFVECVQLEEKNKTTFKLSGYQLPFTIP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG++ V NA +A + + + + L ++H+ R E+V N+ + Y Sbjct: 277 VPGKYNVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNRTEWVTANNGVEILSDVYNAN 336 Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423 ++ ++L + + T+GR IVV G + + + +++ L I +E Sbjct: 337 PTAVSLVLDSFGQMFTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEM 396 Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I + + K + I L D+L+V KG Sbjct: 397 KNLFLILEKTYGNHVHYYPKMEKEHLIVYLKATLQPNDLLLV--KG 440 >gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 450 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 163/449 (36%), Gaps = 45/449 (10%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439 + G G + + A+ A I + + I + I Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E + ++A ++ + DV+++ KG Sbjct: 414 SEIMDTVKA------LVQQGDVVLL--KG 434 >gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia graminis C4D1M] Length = 475 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 79/411 (19%), Positives = 140/411 (34%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR G +FVAI G++ D H F+ A+ A +V+ Sbjct: 20 GATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARNVSAALVAR--- 76 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + P L V +TR L A K ++AVTG++GK++V + I Sbjct: 77 -----VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 131 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ ++ P+ L + + + V + + G Sbjct: 132 AAVGVDARLATAGNFNNDI-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L + A+ ADDAY+ Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALTPDGIAVFPADDAYASIWRV 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ + V + + ++I + + G +NAL A Sbjct: 241 AATGNRIVDFALNTAERTTEA-AVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374 +A G+ + LE V GR + G + D Y +S+ + Sbjct: 300 TSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAID 359 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + S R++V+ G GD +G A D D R Sbjct: 360 VLASHASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASRD 410 >gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 88/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR IQ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + P Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ +H + TI+ Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388 >gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] Length = 482 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 142/403 (35%), Gaps = 30/403 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +R V+ DSR ++ IFVA G + DG+ F +AI GA A+V++ + Sbjct: 17 LAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDE 76 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + +L D+ +FL A + ++ VTG+ GK++ + + Sbjct: 77 VVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSKR 136 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G +N + P I LS + + + + + G + RL Sbjct: 137 YRVHATAGN--------YNNLIGLPLTI-----LSAPADTQMLVLEMGMNDFG-EISRLT 182 Query: 201 GI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAY 252 + G T +G HI +++ AK + E + P S +++ +D + Sbjct: 183 ACAQPTFGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDF 242 Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + +++R + + ++ +G F +PG Sbjct: 243 TPYIIERYARPAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 V NAL AA + +G+ + + E L + R + I Y + S Sbjct: 303 AQSVPNALFAAAVAHRLGVPAFEIDEAFASLEMTGRRAQVRHAACGARVIDDSYNASPES 362 Query: 369 LEMILKNIRTITS-GRIIVVF---GCGGDRDQGKRPIMGKIAL 407 + L + ++ G I V G GD + G A Sbjct: 363 MAAGLDLLGSLPCSGTRIAVLGEMGEMGDEAPRLHALTGAYAA 405 >gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 149/416 (35%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR IQ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + P+ L + S Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLN----------NELGVPLTLLELASE--- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ +H + TI+ Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388 >gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 454 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 83/487 (17%), Positives = 162/487 (33%), Gaps = 67/487 (13%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + ++ DSR I+ G +F+ + G + DGH Sbjct: 1 MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P + VD+ + AS K +++ Sbjct: 54 FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P + Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148 Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +E + D H L + L + + + Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I AD + + G + +K+ +T + Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFTTNV 260 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P+PG++ NA+VAA + + I ++E LE + + R E+ + Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320 Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409 + Y ++ +IL+ I G+ I V + + KR IM ++ + Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDV 461 D I ED ++ P ++ +A + T ++L D Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQ 434 Query: 462 LVVAGKG 468 +++ KG Sbjct: 435 ILL--KG 439 >gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus ND03] Length = 457 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ +++ +N++ DSR I AG +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+T + A+ K +++ Sbjct: 54 FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G L K +T S + Sbjct: 210 MPDGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y +++++L+ I G+ I V G++ M A D Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED ++ P ++ +A ++ E L + D ++ Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQIL 437 Query: 464 VAGKG 468 + KG Sbjct: 438 L--KG 440 >gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662] Length = 451 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 86/473 (18%), Positives = 159/473 (33%), Gaps = 50/473 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +QD++ L+ + P IN +S+DSR + +FV IVG + + H F+ Sbjct: 4 MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ G A + + PI+ V +T K + AS K I+ + Sbjct: 57 ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TG+ GK++ + + + +G S + +RLT+ I + Sbjct: 109 TGSVGKTTTREMIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGV--------- 159 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + S G + I+ A TN+G HI+ ++ K+ + L Sbjct: 160 -----LEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPE 214 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +D K + + + + I+ + T E Sbjct: 215 NGVLYLNGDNDMIRKHI---GYVTHPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMR 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + + G V NAL A L +A + + L + G Sbjct: 272 EPVILNVLGNHNVSNALAAIALGLAYDVPMETIKRQLATFSG-----QRQNILKIHGYTV 326 Query: 360 VDYAHT--SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 +D A+ +S++ LK + GR + V G +G+ AD Sbjct: 327 IDDAYNASPDSMKAGLKILSDYQDSGRKVAVLSDMLELGPDSPDYHREVGEFLGT-AD-- 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVV 464 +TD ++ K + E I + L + DV+++ Sbjct: 384 -ITDLYITGTLSKEYAEAAQKKNLSLKTKWFSSNDELISYLKDYLKEHDVVLI 435 >gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas aeruginosa PAb1] Length = 458 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 84/410 (20%), Positives = 144/410 (35%), Gaps = 32/410 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLS 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + ++ + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA S+ + + + Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIAL 407 Y S+ + + SGR ++V G G+ + +G A Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGELGSWAEEAHREVGAYAA 387 >gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris] Length = 494 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + +G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV NT L+ A+ + ++A+ Sbjct: 55 ADAVARGASGLLVDR--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T+ + ++N + P + A + L+ Sbjct: 107 TGSNGKTSVKALLLAILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-- 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 162 ---VYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + V G I +++ Q + + Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + PLPG V NAL A GL + GI ++ L + V GR + T + G Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLTTGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] Length = 422 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 74/436 (16%), Positives = 140/436 (32%), Gaps = 43/436 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + DSR + G +FVAI G K DGH + +AI +GA +V Sbjct: 5 SRFVVDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKLQHIPEEK------ 58 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V++T +FL A KH ++ +TG++GK++ + Q+ + Sbjct: 59 -LITVNDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGKDR--------- 108 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + + + P I L+ +++ + + + G Sbjct: 109 AFRNPGNLNTEIGLPLSI-----LNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILL 163 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H Q+ K++L E + + ++Y + +K G + Sbjct: 164 NVGTAHRGIAGNQEMILRGKLQLIENMQKNGTAIVLYDKKLLDRISLKPMVTFGYKKGDY 223 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 A + + + K L N +GID Sbjct: 224 QLVDYCYIDFSTKAFYKTPREQLIFNLKSIWNAGQLT------NISAVLAALDILGIDCN 277 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV-- 387 + R N G + D Y + S E ++ I+ + VV Sbjct: 278 KNILENFTPVAGRFRV----MNCNGIYVVDDTYNASIESFETAVETIKKLGKRSFAVVGS 333 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 G +G+I L + + DN +I EI++ + E Sbjct: 334 IKEQGKYSIETHRKLGEILEKLDGVVVYNVDN-------EI--EIMNCSKKIFASNSATE 384 Query: 448 AIRTAIEMLNKQDVLV 463 +L DV++ Sbjct: 385 ISDFLKRILIPGDVVL 400 >gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] Length = 458 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLS 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + ++ + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA S+ + + + Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370 >gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 89/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR IQ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + P Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ +H + TI+ Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + SGR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388 >gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ktedonobacter racemifer DSM 44963] Length = 474 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 140/482 (29%), Gaps = 40/482 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D++ + ++ Q S P DSR I G +F+A G DGH FIP Sbjct: 4 LNDIVQSNTDQIHIQSSTTPDPA--LVFRSAHHDSRLITPGDLFIARKGTNSDGHHFIPA 61 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVT 121 A + A + + + ++V + L A + + + +T Sbjct: 62 ------AARAGALAALCSTPANDVPPDFLQIIVPDVLTALHATARARTQRQKDTVRIGIT 115 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK+S V + + + + PI L Sbjct: 116 GSNGKTSTKDAVAAVLSHKAPTLKTYASYNHELGY----------PITLL---HLEPQHR 162 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A G + I S + Q ++L + Sbjct: 163 YAVLEMGAQCVGELTWLCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELVQVLTPD 222 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI+ DD + + + G T+ + Sbjct: 223 GFAILNYDDELVRAMAAKTQARIL-YYGTGEGATVRASNIGGDTLFGHSFTLHYHDQQQP 281 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 LPGE V AL AA A + + LE L PGR E + I Sbjct: 282 VQLRLPGEHGVTIALAAAATGCAAEMSLDDIASALEDLSPAPGRCEIKPGPNNSTLIDDS 341 Query: 362 YAHTSNSLEMILKNIR---TITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIV 415 Y S+ I + +G+ + G G + + G L D I Sbjct: 342 YNANRQSIIAITSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGLVDYLIA 401 Query: 416 TDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEML-----NKQDVLVVAG 466 D R I + + + +EA + A L D++++ Sbjct: 402 IGDQARFYVEGAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDLVLL-- 459 Query: 467 KG 468 KG Sbjct: 460 KG 461 >gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 454 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 78/440 (17%), Positives = 143/440 (32%), Gaps = 55/440 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + ++ DSR I+ G +F+ + G + DGH Sbjct: 1 MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A P ++VD+ + AS K +++ Sbjct: 54 FIETAFENGAVATFSERKVE----------GHPYILVDDCLQAFQELASYYLEKQRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G L P Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN-YNNEIGLPYTALHMPDDTEKIVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E + + L G + + AK +L Sbjct: 163 HMGDIHLLSELAKPHIGVVTLIGEAHLEFFGS--------------RDKIAKGKLQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D+ + G + +K +T + Sbjct: 209 MDSDGILIAPADSIVDPYLPEGQMVI-------RFGDGAEISVNDLQESKDSLTFTTNVI 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + I ++E LE + + R E+ + + Sbjct: 262 NRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDLA 410 Y ++ +IL+ I G+ I V + + KR IM ++ D+ Sbjct: 322 SDVYNANPTAMRLILETFSKIPANSGGKKIAVLADMKELGEQSVELHKRMIM-SLSPDVL 380 Query: 411 DIAIVTDDNPRSEDPEKIRA 430 D I ED ++ Sbjct: 381 DTLIF-----YGEDIAELAQ 395 >gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] Length = 468 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 70/408 (17%), Positives = 129/408 (31%), Gaps = 33/408 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L+ ++ + P + + +DSR ++ G +FV ++G + D H F Q Sbjct: 15 LSKLL---IAQVNQGVPELPSA-----VRLIQTDSRLVEKGDLFVCLIGERFDAHDFAGQ 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A+V + L VV++TR L AS + +LAV G Sbjct: 67 VMKSGAAALVTNRVLDLP---------IHQFVVNDTRLALGALASAWRQQFDLKVLAVVG 117 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + IC+ + +++ L + Sbjct: 118 SNGKTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVP----------QTLLKLRPQHQM 167 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + + G + +K TN R+H ++ +T A N F L Sbjct: 168 AVIEMGMNHPGEIDYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTH-LSSNG 226 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+ D + + G + + + + + Sbjct: 227 CAVFPVSDEFDACWQALSTGKSTLRFGSGADFEILPPRSDFGQSAVVLRALDAPIE---L 283 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 GE NA AA A G + L V GR + I Y Sbjct: 284 RPNFIGEHNYANAAGAAAAAHAAGCTHEAIQAGLNAFQPVNGRLQVALNTPSILLINDSY 343 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 +S+ K + ++V+ G G++ +G A Sbjct: 344 NANPDSVNAASKVLGQQAGSTLLVLGDMGEVGNQSDEYHAEVGSYAKQ 391 >gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] Length = 482 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 80/463 (17%), Positives = 159/463 (34%), Gaps = 34/463 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +R V DSR + +FVA G + DG+ F P AI GA A+V++ + + Sbjct: 19 AGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELV 78 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + + ILV ++ +FL A + ++ +TG+ GK++ + + Sbjct: 79 DLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAKRYR 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G +++ P+ + S + + + + S G + Sbjct: 139 VHATAGNFNSL----------IGLPLTIL---SAPADTQMLVLEMGMSDFGEIERLSRCA 185 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-------EELLPKESPAIIYADDAYSKE 255 + G T +G HI +++ AK + E S +++ +D ++ Sbjct: 186 QPTFGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPF 245 Query: 256 VMKRAHNAG----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +++ + ++ +G F +PG Sbjct: 246 IIENFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQS 305 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NAL AA + +G+ + E +L + R + I Y + S+ Sbjct: 306 VPNALFAAAVAHRLGVPGFEIDEAFGELQMTGRRTQVRHAACGARVIDDSYNASPESMAA 365 Query: 372 ILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP 425 L T+ G I V G GD + ++G A + + V +N R Sbjct: 366 GLNLFSTLPCTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARVM-- 423 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + IR ++ ++D+++V KG Sbjct: 424 ADAARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLV--KG 464 >gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] Length = 462 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 140/399 (35%), Gaps = 35/399 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ VS D+R ++ G +FV +VG + DGH F+PQA+A GA ++ + A Sbjct: 22 DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAARAV--------- 71 Query: 87 RSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P ++V +T K L + AVTG+ GK+SV ++ + +G + Sbjct: 72 --DAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAHA 129 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + P+ LA+ A + + Sbjct: 130 SVKS----------YNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFV---RPH 176 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A + T +G HI+ +A L A++ AD+ + + A G Sbjct: 177 AVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKVGA 236 Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V S G G L V++ + G+ F G N+L + A Sbjct: 237 TVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCVLLMLEA 296 Query: 325 IGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNI--RTI 379 + + L L + GR E G VD Y S++ LK + R + Sbjct: 297 LDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGARKV 356 Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAIV 415 R++ + G+ + + IA D + Sbjct: 357 AGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFL 395 >gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 495 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRALSNGSLYVALRGERVDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+AQGA ++V P +VV NT L+ A+ + ++A+ Sbjct: 55 ADALAQGASGLLVER--------LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T + ++N + P + A + ++ Sbjct: 107 TGSNGKTSVKALLLAILTEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADVAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIARPQVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPS 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ H V G I +++ + Q T+ Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVPGRRVLRYGLQASADIRARQLRLQADGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + V GR + G Sbjct: 278 QGEAQVTLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQARPVAGR-QIAHRLPGGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLVDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373 >gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 454 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 165/495 (33%), Gaps = 67/495 (13%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + ++ DSR I+ G +F+ + G + DGH Sbjct: 1 MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P + VD+ + AS K +++ Sbjct: 54 FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P + Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148 Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +E + D H L + L + + + Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I AD + + G + +K+ +T + Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFTTNV 260 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P+PG++ NA+VAA + + I ++E LE + + R E+ + Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320 Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409 + Y ++ +IL+ I G+ I V + + KR IM ++ + Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEM-LNKQDV 461 D I ED ++ P N+ +A+ I+ L D Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADENQFDAMLETIQKVLQPADQ 434 Query: 462 LVVAGKGHETVHIVT 476 +++ KG ++ +V Sbjct: 435 ILL--KGSNSMQLVK 447 >gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] Length = 453 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 162/460 (35%), Gaps = 39/460 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + + VS+D+RHI +F+A+VG + D H F QA+ GA A++V Sbjct: 9 LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A L +VV +T+ L + ++ + +A+TG+ GK++V V Sbjct: 69 RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + + P + + A+ G Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ N+ H++ + AK +++ L + Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A + Q F V K + + + G+ V N Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVAN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A+ + + G A + L L V GR + + I Y + +++ + Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + T R +V+ G+ +G+ A L ++T ED I +++ Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401 Query: 433 IHGIPGFIEKGNRIEAIRTAIE-MLNKQD---VLVVAGKG 468 G + E I + + N+ + ++V KG Sbjct: 402 CGG----KHFSDHGELIEYIKQNLANENEACHTVLV--KG 435 >gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] Length = 452 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 81/419 (19%), Positives = 149/419 (35%), Gaps = 35/419 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ + +I+ VS+DSRHI +FVA++G + D H FI Sbjct: 4 MLLSEIAKACDGRLVG---------ADCQISSVSTDSRHIDEEGLFVALIGERFDAHDFI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P QGA A++VS + P ++V +T+K L L A ++ A+ Sbjct: 55 PAVQEQGATALLVSKEVD---------TTLPQVIVSDTQKALGLVAKHVHQVCHTFTFAL 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V + I RSG G + + PS + L Sbjct: 106 TGSCGKTTVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQN 165 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +++ + A + N+ H++ + + AK +FE L + Sbjct: 166 EISYTTQLA-------------QPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LQE 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299 AI D + ++ + + + ++ + Sbjct: 212 NGIAIYNLDSNGLPKWSSLFEGKQVVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGN 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G+ V NA+ AA L I + + L++L V GR S I Sbjct: 272 IQVSLGIIGKHNVANAVAAAALAIQAHASLNDIQQGLQELGSVKGRVAVETLASGLKVID 331 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 Y + +++ + + R +V+ G+ +G+ A +VT Sbjct: 332 DTYNASVPAMKAAVDLLGGFKGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT 390 >gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 494 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + +G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV NT L+ A+ + ++A+ Sbjct: 55 ADAVARGASGLLVDR--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T+ + ++N + P + A + L+ Sbjct: 107 TGSNGKTSVKALLLAILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-- 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 162 ---VYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + V G I +++ Q ++ Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + PLPG V NAL A GL + GI ++ L + V GR + T + G Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 459 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 164/470 (34%), Gaps = 37/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + QW++ ++ VS DSRH+ G +FV + G + DGH ++ Sbjct: 3 MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A GA A + +S + + D + P+LVV + L K ++AV Sbjct: 56 PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + P+ L S + Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVAKTYANFN----------NEIGVPVTLLNMES---NT 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G L + + + + + L + Sbjct: 157 EAVVVEMGMDRFG-QLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ + +R + R + G Q +Q E D Sbjct: 216 DGTLVFNGDEP---LLEERVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ GE+ + NAL A + + I A + + L + + R E+V + + Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK I GR I V G + + +A ++ D + Sbjct: 333 VYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIASVY 391 Query: 420 PRSEDPEKIRAE-IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + ++ + I G P + + I L +D++++ Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441 >gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] Length = 457 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 80/483 (16%), Positives = 160/483 (33%), Gaps = 58/483 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + E++ +++ +N++ DSR I AG +F+ + G + DGH FI Sbjct: 1 MKLT---LHEIAEVVGA-KNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A + ++ ++VD+T + A+ K +++AV Sbjct: 56 QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + G +N + P + Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHMPD 151 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + L + A+ ++ + Sbjct: 152 DTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMP 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ D + G L K +T S + D Sbjct: 212 DGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFLDG 264 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 265 QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADILSD 324 Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIA 413 Y +++++L+ I G+ I V G++ M A D Sbjct: 325 VYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTV 384 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465 I ED ++ P ++ +A ++ E L + D +++ Sbjct: 385 IF-----YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILL- 438 Query: 466 GKG 468 KG Sbjct: 439 -KG 440 >gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] Length = 477 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 86/466 (18%), Positives = 159/466 (34%), Gaps = 34/466 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ++I + P+ I +S DSR ++ G F AI G++ DGH + A+A GA Sbjct: 6 TVADMIAITAGRPVGNLPTGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGAS 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ A A R P++VV++ L A + I+AVTG+ GK++ Sbjct: 66 LLVVAEA----KLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q SG + + P+ LA+ + + Sbjct: 122 KEMLRQALAPSGRVHAAVASFNNHWGV----------PLTLARMPAD---TEFGVFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G + + ++ T + H+ + + AK +FE + S + + Sbjct: 169 NHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDN 228 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +L+ G K L + + + G+ + +PG Sbjct: 229 AQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPG 288 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHT 365 NA+ G G + LE L L V GR + GG + Y Sbjct: 289 RHIADNAMAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNAN 348 Query: 366 SNSLEMILKNIRT---ITSGRIIVVFGC---GGDRDQGKRPIM-GKIALDLADIAIVTDD 418 S+ + + GR + V G G+ + G + + + Sbjct: 349 PASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWL--- 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E +R + + I E A++ + D L+V Sbjct: 406 --AGEAMAALRDALPDSVT-VIWFPTTAELTDFALQWVQPGDALMV 448 >gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1001] Length = 475 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 142/411 (34%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR G +FVA+ G++ D H F+ A+ A++V+ Sbjct: 20 GATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVAARNVSAVLVAR--- 76 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 P + V +TR L A K ++AVTG++GK++V + I Sbjct: 77 -----VPDGWTVPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTTVKEMIASIFA 131 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ++ ++ ++ P+ L + + + V + + G Sbjct: 132 AAVGAAERLATAGNFNNDV-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + N R+H ++ T +A L E A+ A+DAY+ Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALKPEGVAVFPANDAYASIWRV 240 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ + V + ++I + G+ +NAL A Sbjct: 241 AATGNRIIDFALNTAERATEA-AVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374 +A G+ + LE V GR + G ++ D Y +S+ + Sbjct: 300 TSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAID 359 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + S R++V+ G GD +G A D D R Sbjct: 360 VLASHASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRD 410 >gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 50/477 (10%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + + VS+D+RHI +F+A+VG + D H F QA+ GA A++V Sbjct: 9 LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A L +VV +T+ L + ++ + +A+TG+ GK++V V Sbjct: 69 RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + + P + + A+ G Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ N+ H++ + AK +++ L + Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A + Q F V K + + + G+ V N Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVAN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A+ + + G A + L L V GR + + I Y + +++ + Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + T R +V+ G+ +G+ A L ++T ED I +++ Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGH-------------ETVH 473 G F G IE I+ + N+ + ++V KG E Sbjct: 402 CGG-KHFSNHGELIEYIKQ--NLANENEACHTVLV--KGANSAGMSKVAAALKENYQ 453 >gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 454 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 83/487 (17%), Positives = 161/487 (33%), Gaps = 67/487 (13%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + ++ DSR I+ G +F+ + G + DGH Sbjct: 1 MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P + VD+ + AS K +++ Sbjct: 54 FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P + Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148 Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +E + D H L + L + + + Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I AD + + G + +K+ +T Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFMTNV 260 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P+PG++ NA+VAA + + I ++E LE + + R E+ + Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320 Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409 + Y ++ +IL+ I G+ I V + + KR IM ++ + Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDV 461 D I ED ++ P ++ +A + T ++L D Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQ 434 Query: 462 LVVAGKG 468 +++ KG Sbjct: 435 ILL--KG 439 >gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] Length = 449 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 73/427 (17%), Positives = 145/427 (33%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ Q L G Sbjct: 76 -IILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ N + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D P N + +G D Sbjct: 241 FGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEMINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440 G G+ + + + I + N + D P KI + + I Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIM 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] Length = 453 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 149/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMVTNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N V I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385 >gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 85/416 (20%), Positives = 142/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 56 DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E L Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ ++ ++ T++ Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL A A+G+ ++ L + V GR ++ I Sbjct: 274 TARVQLNLLGTHNVSNALAVAAASCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] Length = 459 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 171/475 (36%), Gaps = 38/475 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ++ + ++ ++ V+ DSR I+ W+F+ I G + DGH FI Sbjct: 4 MSLQEITAACHGQYFGGEAVSH-----IEVAGVAIDSRKIEKDWLFIPIKGARVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + +GA + + P ++VD+ + L A ++ + Sbjct: 59 PQVMEKGALCTLSE--------VVLENVSHPYILVDSCEQALKDIAEHYRKALDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + ++ G + P+ + Sbjct: 111 TGSVGKTSTKEMIASVLEQKYHVLKTAGNFN----------NEIGLPLTIFNIRDE---H 157 Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + + G + HRL + TN+G H++ + AK +F+ + P Sbjct: 158 EIAVLEMGINHFG-EMHRLAKMARPDICVITNIGLCHLENLIDRDGILKAKTEMFDFMQP 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + DD + LS ++ T+ + Sbjct: 217 DAKIILNGDDDKLITVTDVKGQTPMFFGLSTELDAFADNIHTHSLKG--VSCTLHLGDNC 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 D + P+PG VYNAL A + +G+ + + + +E L V GR + T+S Sbjct: 275 IDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVSGRNNMILTDSLLIIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 Y S + + + + ++ ++ F G D + R + + D+ I Sbjct: 335 C-YNANPVSTKASIDVLSGAETRKVAILGDMFELGEDEKELHRQVGVHASEKGIDLVICI 393 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHE 470 + ++ E+ G + + + E+L+K D ++V A G E Sbjct: 394 GELSKA--TAAGAEELSAG-NQVVHFDTKADFFTKMNELLHKDDTILVKASHGME 445 >gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] Length = 481 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 82/444 (18%), Positives = 157/444 (35%), Gaps = 29/444 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A A +VV + A + Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAADAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR I V G + + + +A + D + T SE + + Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 + + E + ++ + DV++V Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455 >gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium cylindroides T2-87] Length = 453 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 142/416 (34%), Gaps = 27/416 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I K E+ + L+ + + I V DSR I +++ ++G + DGH FI I Sbjct: 1 MIVKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +G +A + + + ++VD+T + L A ++ VTG++ Sbjct: 61 QKGVKATLWQKDH------TPYPEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+S + I + + G ++N + P + L V Sbjct: 115 GKTSCKDMLYSIFSQEKKTQKTQGN--------RNNEIGLPLTV-----LDLDKDVEVAI 161 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + + G + T +G H++ ++ AK+ + E L P Sbjct: 162 LEMGMENKGEIDFLTHIARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFL 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + +++ + R++S G+ G + + + Sbjct: 222 YDKESPEIQECLLEMDIDPSKRLVSFGFNGDISIISSIDYTE--NGIEFYCSSLTDKITL 279 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 G+FQ NAL + + I ++ +L+ L+ L + R + I Y Sbjct: 280 NALGDFQAKNALPCIYVALDQKISTSSILKGLKDLEMTKMRTALLKV-HDAKIIDDTYKS 338 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVT 416 S + + + + + + I V D + + I D T Sbjct: 339 NPESAKAAIDTLMKVQAKKHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYAT 394 >gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] Length = 453 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 19 GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 75 -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P+ L ++ + + + A+ G + +K Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + A + L + AI+ D + Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S + + V T+ + + G+ V NAL AA L + Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G A + + L L V GR + I Y + +++ ++ + + ++ R Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +++ GD +G+ A ++T Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390 >gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] Length = 470 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 42/477 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L L ++ + P R I V+ DSR + G +FV + G DGHL++ + Sbjct: 6 LPALSLDQLASIVGARLVAPSGER-PPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGE 64 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP-ENI 117 A +GA A +V + SA ++ +LVV +T + L Sbjct: 65 AFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIR 124 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + VTG+SGK+S ++ + + + L + + Sbjct: 125 IGVTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGI 184 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G V +K T +G H++ T++ K ++F Sbjct: 185 DHVGEMDVLARI------------VKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS- 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + +D V+ F + + + Sbjct: 232 -FDDRSVGFIPEDEEFFHVLVEGWRGTFLPYGPATVEGFEGWESRGLEG------VILSW 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K GE V NAL L +G+ ++V E L+ + GR E G Sbjct: 285 KGLRIPLQGYGEHMVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELK--EIGGVW 342 Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411 VD Y S+ L+ +R + R IVV G GD + +G AD Sbjct: 343 FLVDCYNANPESMRASLEGVRGLKGIRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPAD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E+ E A ++ G G EA + ++ + D++++ KG Sbjct: 403 VVLLV-----GEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLL--KG 451 >gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] Length = 458 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 39/470 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +L + E ++P + + +++D+R I G +F+A+ G DGH ++ A Sbjct: 2 ELSLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVAT 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A +V + + P V ++ K L K ++ VTG+ Sbjct: 62 RKGAAAAIVETP--------NTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSC 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V + IC +G + G +N + P + + + Sbjct: 114 GKTTVKGMLAAICSLAGSTVATRGNL--------NNHIGVPLSL-----MRLANEHQFAV 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + S ++ + I+ N+ H++ + +A K L+ L+ Sbjct: 161 IEAGTSGPNEIKYLAELIQPHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLVEGGVGV 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDF 302 + A + R + + S +EG++ + Sbjct: 221 LNVASAQQPTLLDALQGKKITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVEL 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + G V NAL AA A+GI L+ LEK GR + N + I Y Sbjct: 281 KLGVLGAHNVANALAAASAARAVGISVELIKRGLEKYTGDKGRMQLARVNEKLTVIDDTY 340 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDL-ADIAIVTDD 418 + S++ + R +V G G+ + + +G+ A T + Sbjct: 341 NASPGSVKAAIDYAAQFE--RSAIVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGE 398 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R P ++ + ++ A+ ML +V+V+ KG Sbjct: 399 ASRF--------TAQGYGPHAKWFEDKEQ-LKQALPMLCSSEVVVLV-KG 438 >gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] Length = 494 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 85/468 (18%), Positives = 157/468 (33%), Gaps = 52/468 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ DSR + G ++VA+ G + DGH F+ A++ GA +V Sbjct: 28 TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V +T ++ A ++A+TG++GK++ + V+ + + + G Sbjct: 88 SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGN- 146 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 Q+N L P + L+ V + G D ++ G Sbjct: 147 -------QNNELGVPKTL-----LAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ +++ AK L L A + ADD Y+ V + A RV +V Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY----------------- 313 + G ++ Q +V + + F+++ Sbjct: 255 LFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314 Query: 314 ---------NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 NA A + A GI A+ + L GR E + + Y Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374 Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDN 419 +S+ L + G+ + V G G+ +G+ A L D + Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV--- 431 Query: 420 PRSEDPEKIRAEI-IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E I G+ + G+ E + D ++V Sbjct: 432 --GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLV 477 >gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis DSM 18011] Length = 436 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 138/370 (37%), Gaps = 22/370 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR+ G +F+A+ G DG+L+ +A+ GA ++V + I + Sbjct: 17 ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVD------NPEVVIEGDDRY 70 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V ++ L A+ I+A+TGT+GK++ + + + + + G Sbjct: 71 ILVHDSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNL-- 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +N + P I LS +S + + + A+ G + + G TN+ Sbjct: 129 ------NNHIGVPLTI-----LSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNV 177 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L++ L K++ D + + Sbjct: 178 GKAHLEGFGSLEGVIRTKSELYDYLKEKKNGTAFINFDDSILMKQAEGISHLITYGTSES 237 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + ++ L G++ + N L A + + + + Sbjct: 238 TSVCGKIDDSSLTLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDI 297 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E LE+ R +F T I Y S+ L N + + +V+ G Sbjct: 298 KEALEQYTPQNNRSQFKKTE-SNQLIIDAYNANPTSMLAALNNFCNLKAEHKMVILGDM- 355 Query: 393 DRDQGKRPIM 402 R+ GK ++ Sbjct: 356 -RELGKDSLL 364 >gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Leadbetterella byssophila DSM 17132] gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leadbetterella byssophila DSM 17132] Length = 433 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 136/394 (34%), Gaps = 34/394 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +++D+R+IQ +F A+ G K +G+ F QAI GA VV A +++ Sbjct: 14 SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDDA--------SLKGKE 65 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ ++ + L A + ++A+TG++GK++ + ++ G Sbjct: 66 RMIYCEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRV---LGQKYKVHATK 122 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +++ P A+ + + +++ S + G T Sbjct: 123 GNLNNHIGVPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIA----------EPTHGFIT 172 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NLG+ H++ ++ K LF+ L + A+D + + + + Sbjct: 173 NLGKAHLEGFGGEEGIRKGKGELFDFLKQSGGIVFVNANDPKVRALAEERNILPIVYYGD 232 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + V + + G++ N A + + Sbjct: 233 DEDA-------LLIKEESPVVVFESPVSGKTYTTFIGGKYNFDNMQTAHAIGRYFDVSED 285 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 E + + R + I Y +S+E LK+ + + VV Sbjct: 286 KACEAIAHYNPDNNRSQ-HVMVGTNHFIMDAYNANPSSMEASLKSFGALKTDSPKVVVLG 344 Query: 391 G----GDRDQGKRPIMGKIALDL-ADIAIVTDDN 419 GD + + +GK+ +L D ++ +N Sbjct: 345 DMYELGDYSEAEHAAIGKLLSELKFDDVVLFGEN 378 >gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] Length = 473 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 83/479 (17%), Positives = 156/479 (32%), Gaps = 53/479 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + + + V +DSR ++ G +FVA G + DGH + Sbjct: 1 MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + AT P +VVD+ L A + + ++A+TG Sbjct: 60 ----------GAVGAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ R G + + G + T Sbjct: 110 STGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRD-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G ++ G N+G HI ++ A E LP+ Sbjct: 157 LVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEA-KGEMVEALPESG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R + + + + + Sbjct: 216 LAVLNADDPLVRGMAPRTRARVLLFGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + +G+ + + L + R E + Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLNEARSLSRWRMEVTERPDGVTIVNDA 334 Query: 362 YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410 Y + +S+ L+ + + GR V G GD +G++A+ L + Sbjct: 335 YNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVS 394 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + V ++ +R + G + + AI L DV++V Sbjct: 395 KLVAV-----GGQEAAWLR--MGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446 >gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc argentinum KCTC 3773] Length = 441 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 132/363 (36%), Gaps = 36/363 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ VS +SR + G +FVA+V + DGH +I A+ +GA A++V + + + Sbjct: 21 QVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAAVLVDDQHDIPN------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V +T L + + ++A+TG++GK++ + + + Sbjct: 73 DVPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKDMTAAVMAKRYKTFKTPE 132 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + LT P+ + V + G + Sbjct: 133 NFNN-EIGVPMTLLTMPADTEVL------------VVELGMDRPGQLTALSKLVVPDVAI 179 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T +G HI++ QT+ AK+ + L P + + ++ + Sbjct: 180 ITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPD-----GVLCIPFDEPLLTQ--------- 225 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + T + ++ F PL G + + NAL A I + ID Sbjct: 226 -ADVAQQVVVFGDGVSAVQGDATTTTFTYQETRFAIPLIGGYNIMNALAAVSAGILLHID 284 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +E L+ + R E + T I Y ++ +L ++ I + VV Sbjct: 285 LDDAVEALQTFDLTKNRTERLVTARGVNLISDVYNSNPTAVAAVLATLKAIPAPHKYVVL 344 Query: 389 GCG 391 G Sbjct: 345 GDM 347 >gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate [Bacillus cereus ATCC 10987] Length = 451 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 175/475 (36%), Gaps = 45/475 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E + + +++ V DS++++ G +FV I+ K DGH ++ Sbjct: 1 MNLKKLEKVVNGEGLQESFHL------IEMHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V + I + G ++ P+ + + Sbjct: 108 TGSNGKTTVKDIIGGILSSTYRVHKTKGNFNSQ----------IGLPLTILEMKRD---T 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G ++ + T +G+ H++ +++ AK + + L Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDD 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + ++ + N L ++ V + Sbjct: 215 GLFLYN-----GDEPLLSQNINMLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKI 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G+ + NA+V + + + E L+++++ RF+F+ + I Sbjct: 270 QYDVPLHGKHNILNAIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIIND 329 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + + +S++ ++ ++ + + I+V G G + +GK+ + + + T Sbjct: 330 AWNASPSSMKAAIETLQKLNAYEKKIIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFT 389 Query: 417 DDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +I AE N+ E ++++ K+DV+++ KG Sbjct: 390 -----YGALSEIVAEEARKNYHTEKVQSFDNKDEIAEEILKVITKKDVVLL--KG 437 >gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] Length = 431 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 31/379 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV++D+R + AG +FVA+ G + D H F AIA GA A++VS + + Sbjct: 2 ITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSK---------RLLVD 52 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TR L FA+ + + P N++A+TG+SGK+SV I ++ G + G Sbjct: 53 VPQIVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGN 112 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP + + A+ G + D + A Sbjct: 113 FNNDIGVPLTLLRLTPE-------------HDFAVIELGANHIGEIAYTTDLSRPEAALV 159 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F L I +S AH R Sbjct: 160 NNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGIAIINADSHDWSHWQTTLAHKQVWRFSP 219 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 +G + + + T+ PLPG V NAL AA L I++G D Sbjct: 220 LGGEDIDFYATDLRIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADL 279 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V L +L VPGR + + Y S+ ++ + + R++V Sbjct: 280 DAVRVGLSQLKAVPGRLFPLVLADGKLLLDDTYNANVGSMTAAVQVLAEMPGYRVMV--- 336 Query: 390 CGGDRDQGKRPIMGKIALD 408 G +G+ A D Sbjct: 337 ------AGDMAELGETAED 349 >gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa] Length = 458 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTAVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + ++ + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA S+ + + + Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370 >gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 377 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 138/392 (35%), Gaps = 29/392 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V Sbjct: 1 GGDCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGAA--- 57 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLS 143 P LVV +TRK L+ + + AVTG+SGK++V + I + G Sbjct: 58 -----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPV 112 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + P + + AS G + + K Sbjct: 113 LATRGNLNNELGVPLTLLELAPE-------------YTSAVIELGASRVGEIAYTVSLAK 159 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN G H+ A E L A++ +D KRA + Sbjct: 160 PHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDR 218 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 ++ ++ ++ T++ L G V NAL AA Sbjct: 219 NVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAG 278 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+G+ ++ L + V GR ++ I Y S+ + + +G Sbjct: 279 CAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVIDDTYNANPASINAAVDILTGF-TG 337 Query: 383 RIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 R ++V G G+ +QG R + A ++ Sbjct: 338 RTVLVLGDIGELGEWAEQGHREVGAYAAGKVS 369 >gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. RCC307] gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. RCC307] Length = 464 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 79/473 (16%), Positives = 163/473 (34%), Gaps = 35/473 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQDL + + + +S+DSR +Q G +F+ + G + DGH F+ Sbjct: 7 LQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDGHDFLDA 66 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A++ G +++ ++ + +VVD+T A + ++AVTG Sbjct: 67 AVSVGVAGALIARDWA-----GYVPEQLATVVVDDTLSAYQQIALAWRRQLHCPVVAVTG 121 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ ++ G +G + + + + Sbjct: 122 SAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRS---------------NSSH 166 Query: 183 THVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E GL + HRL + TN+G HI ++ A A + L Sbjct: 167 AGLVLEMGMRGLGEIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQA-KCEITDRLKP 225 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I A D + + R + + +++ + Q +I + + Sbjct: 226 SGLLVIPAGDPLLEAEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQGL 285 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G N L+A +G+ + + + L R + + Sbjct: 286 KLINPLEGRHNARNFLLALAAAQELGVTAEQLRDLSVSLPGGRARRLRINGVNILDET-- 343 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416 Y + ++ L+ ++ G V G GD+ +G+ A L D +V Sbjct: 344 -YNASPEAMLASLELLKQQPGGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGLVVV 402 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 P + G+ + + A ++L D +++ A +G Sbjct: 403 ASGP----EASALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRG 451 >gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter calcoaceticus PHEA-2] Length = 466 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 142/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + AS G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ ++ AK ++ +LP + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A +S G ++ V + + P GE V NA A Sbjct: 245 AKAHRISTFGVGGDVYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +AIGI +++ LE+ GR F+ + I Y S+ + + Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGV 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D I Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398 >gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] Length = 478 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 85/480 (17%), Positives = 158/480 (32%), Gaps = 37/480 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ + + + + +DSR ++ G +FV +VG + DGH F+ Sbjct: 1 MRLANLVELWGRPIEAAPADQAAS-----FSRIGTDSRELEPGCLFVPLVGERFDGHGFL 55 Query: 61 PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 A+ QGA A++ + Q + S I +VD+T+ + ++ Sbjct: 56 AAALEQGALAVLAQRDRLSAEQAEALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVI 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ ++ + G +G + P+ L KA Sbjct: 116 AVTGSAGKTTTRELIRAVLSPLGPVLASVGNEN----------NDIGVPLTLLKAGGEHR 165 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + G + + TN+G HI +++A AK + L Sbjct: 166 ---AVVVEMGMRGLGEIERLSRCAEPDITVITNIGTAHIGRLGSREAIATAKCEIVAALR 222 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVT 292 P I D + RV L+ Sbjct: 223 PDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLIWGR 282 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ PLPG N L+A + +G+D + L R +G Sbjct: 283 AEPGAREHSTELPLPGRHNARNLLLALAVASELGVDPLQLSRLEVALPGGRSRRIRLGEI 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGKIALDLA 410 Y + ++ L + + R + G++ +G+ A L Sbjct: 343 EVLDET---YNASPEAMLAALDLLASQGGRRFAALGTMLELGEQSTELHRRVGERARALG 399 Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 D ++ E G+P + +A +T + L D L++ A +G Sbjct: 400 LDGLVIVAGGAEGEALLAGA----AGLPRLQRVDSPEDAAQTLLGWLEPGDHLLLKASRG 455 >gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella multiformis DSM 16608] Length = 504 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 125/381 (32%), Gaps = 24/381 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR AG IF+A+ G DG+ F A+ +G VV A + + Sbjct: 82 VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAG------DARF 135 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + ++ +TGT+GK++ + + + Sbjct: 136 ILVDDALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNN 195 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + + + AS G + + ++ G TN+ Sbjct: 196 DVGVPRTLLGIRPE-------------HDIAVIEMGASHPGDIEKLVRYVEPTCGLITNV 242 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + +A E+ ++ Sbjct: 243 GRAHLQGFGSFEGVKRTKGELYDFLKAHGGLLFLNESNADLTEMAEQREFDRIVTYGQDS 302 Query: 273 QGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 CA K T ++ L G + + N L A + + G+ Sbjct: 303 TADVQGQVVSCAPFLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVT 362 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + V LE R + + I Y +S+ ++N R + + + Sbjct: 363 AQQVNHALENYIPRNNRSQLT-ETAHNRLIVDAYNANPSSMSAAIENFRLMQVENKMAIL 421 Query: 389 GCGGDRDQGKRPIMGKIALDL 409 G + + ++ +L Sbjct: 422 GDMRELGEASGEEHQRVVGEL 442 >gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Leuconostoc gasicomitatum LMG 18811] gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc gasicomitatum LMG 18811] Length = 441 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 79/440 (17%), Positives = 157/440 (35%), Gaps = 42/440 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S+ + G +FVA+V + DGH +I A+ GA A++V + + I + Sbjct: 22 ITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKH-------VINTK 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++VD+T L + I+A+TG++GK++ + I + + Sbjct: 74 IPAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPEN 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + L P + + ++ RL ++ Sbjct: 134 FNN-EIGVPMTLLMMPENTEVLVVE----------LGMDRPGQLTVLSRL--VRPDVAMI 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T +G HI++ +T+ AK+ + L + + ++ A +L Sbjct: 181 TMIGEAHIEFFKTRANIARAKLEIVSGLKSD-----GVLFIPFDEPLLTEAIVQRQVILF 235 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + F PL G + + NAL A I + ID Sbjct: 236 GQGVNNIEAFSDHTMFVYQNT----------QFAIPLIGGYNIMNALAAISAGILLHIDL 285 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V + L+ + R E + T I Y ++ +L ++ I + VV G Sbjct: 286 KKVAKALQTFDLTKNRTERLVTARGVVLISDVYNSNPTAVAAVLATLKAIPAPHKYVVLG 345 Query: 390 CG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 GD+ +G K+ D + +++ I I + ++ Sbjct: 346 DMLELGDQANKLHANLGQKVLDSGVDGVYLVGP-LLNKNMAPIIQAHIDSVDFHQYATDQ 404 Query: 446 IEAIRTAIEML-NKQDVLVV 464 ++ +R ++ L K DV+++ Sbjct: 405 LDQLRLDLQTLGEKGDVILL 424 >gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDSRLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 56 DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E L Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ ++ ++ T++ Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 TARVQLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 461 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 129/388 (33%), Gaps = 22/388 (5%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + EL + + +S D+R + G +F+A+ G+ DGH I A+ + Sbjct: 3 LLWTREELETATGGTFLGNTSVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEK 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA AI+ SA D IL+V +T L A + ++AVTG+ GK Sbjct: 63 GAAAILAHSAEGFTDP--------RILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ SGL+ + P+ LA+ Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGV----------PLTLARLPRE---ASFCISE 161 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G ++ T +G H+ + + A K + L + Sbjct: 162 IGMNHPGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVP 221 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + HL + + +S++GK F+ P Sbjct: 222 DDAHGTEFFTAEAEKAQAVLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPA 281 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365 PG NA+ A C A+G D A L GR + + Y + Sbjct: 282 PGTHLARNAVAALAACAALGADVAKAANALADFRPGKGRGALTQIVGGAITLLDESYNAS 341 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393 + S+ L +R I + R I V G + Sbjct: 342 AASIRAALDVLRHIPATRRIAVLGDMRE 369 >gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 457 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ +++ +N++ DSR I AG +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+T + A+ K +++ Sbjct: 54 FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G L K +T S + Sbjct: 210 MPDGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y +++++L+ I G+ I V G++ M A D Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED ++ P ++ +A ++ E L + D ++ Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQIL 437 Query: 464 VAGKG 468 + KG Sbjct: 438 L--KG 440 >gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter heparinus DSM 2366] Length = 433 Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 69/381 (18%), Positives = 132/381 (34%), Gaps = 29/381 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R+I G +F A+ G K D + F +A+ GA ++ + ++N Sbjct: 17 VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEA--------YQTNERC 68 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V + L A + ++ +TG++GK++ + + R + G + Sbjct: 69 LLVSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNLNN 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 P + + + A+ H + L GI + G TN Sbjct: 129 HIGVPLSILSLGPEI-------------EMAVIEMGAN-HQKEIEFLCGIAQPTHGLITN 174 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+D + K LF L A I ++ Y E+ ++A +V+ G Sbjct: 175 IGMAHLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPYLLEMSEKAQL--SKVVYYG 232 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + K+ +++ + +F L G + N L A + + Sbjct: 233 TESSNTVAGKLLKTDPFIELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVE 292 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L R + T S Y +S+ L NI + V+ G Sbjct: 293 INAGLSGYFPNNNRSQLTKTASNTVICDF-YNANPSSMAAALTNIELLKGSNKTVIIGDM 351 Query: 392 ---GDRDQGKRPIMGKIALDL 409 G+ + + + A L Sbjct: 352 FELGEESAKQHLNIIEQAEKL 372 >gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] Length = 461 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 130/388 (33%), Gaps = 22/388 (5%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + EL + + +S D+R + G +F+A+ G+ DGH I A+ + Sbjct: 3 LLWTREELETATGGTFLGNAPVSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEK 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A++ SA L D IL+V +T L A + ++AVTG+ GK Sbjct: 63 GAAAVLAHSAEGLTDP--------RILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ SGL+ + P+ LA+ + Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGV----------PLTLARLPREAA---FCISE 161 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G ++ T +G H+ + + A K + L + Sbjct: 162 IGMNHPGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMP 221 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 HL + + +S+ GK F+ P Sbjct: 222 DDAHGTPFFTAAAVKAQAVLWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPA 281 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365 PG NA+VA C A+G D A L GR + + Y + Sbjct: 282 PGTHLARNAVVALAACAALGADVAKAAAALAAFRPGKGRGALTKIAGGAITLLDESYNAS 341 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393 + S+ L +R I + R I V G + Sbjct: 342 AASIRAALDVVRHIPATRRIAVLGDMRE 369 >gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 466 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 141/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G +F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L A R ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + AS G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQFAVMELGASHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ ++ AK ++ +LP + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEIHKA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A +S G I+ + + T+ P GE V NA A Sbjct: 245 AQAHRISTFGVGGDIYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+GI +++ LE+ GR F+ + I Y NS+ + + Sbjct: 305 LALGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPNSMRAAAQVLLQQQGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G L D I Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGHDLAQLPLDHII 398 >gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida Fx1] Length = 453 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + N V I V +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF N + + Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385 >gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] Length = 494 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 84/468 (17%), Positives = 157/468 (33%), Gaps = 52/468 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ DSR + G ++VA+ G + DGH F+ A++ GA +V Sbjct: 28 TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V +T ++ A ++A+TG++GK++ + V+ + + + G Sbjct: 88 SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGN- 146 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 Q+N L P + L+ V + G D ++ G Sbjct: 147 -------QNNELGVPKTL-----LAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ +++ AK L L A + ADD Y+ V + A RV +V Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY----------------- 313 + G ++ + +V + + F+++ Sbjct: 255 LFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314 Query: 314 ---------NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 NA A + A GI A+ + L GR E + + Y Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374 Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDN 419 +S+ L + G+ + V G G+ +G+ A L D + Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV--- 431 Query: 420 PRSEDPEKIRAEI-IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E I G+ + G+ E + D ++V Sbjct: 432 --GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLV 477 >gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 455 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 73/426 (17%), Positives = 139/426 (32%), Gaps = 44/426 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + +N++ DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA AI P L+V++ K A K +++AV Sbjct: 56 DLAFENGAVAIFSEKDL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G L P Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + + L G + + A+ ++ Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ + G L K +T + Sbjct: 211 SNGILIAPGDSIIDSYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++E LE + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + ++ L+ D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383 Query: 414 IVTDDN 419 + D+ Sbjct: 384 VFYGDD 389 >gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia trachomatis D/UW-3/CX] gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis G/11222] gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-EC] gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-LC] Length = 450 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L V + R+ L ++ +TG+ GK++ +F Q+ Sbjct: 78 -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S + +++LT P + +A + + S ++ L+ I+ G Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++ H + + A + + + + + K+ A Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + + + + + + V IS D + P N ++A L + Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385 + + + L + RFE G R+ D Y + +++ L + G+II Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355 Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + G G + A+ A I + + I + I + Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++A++ ++ DV+++ KG Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434 >gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella amnii CRIS 21A-A] Length = 441 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 145/445 (32%), Gaps = 41/445 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IF+A+ G +G+ F A+ G +V + + N I Sbjct: 16 VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAE------PDNERI 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151 ++V + A ++ +TGT+GK++ + + +G + Sbjct: 70 ILVSDALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNN 129 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + +TT I + + AS + + ++ G TN Sbjct: 130 DVGVPRTLLEMTTKDEI--------------AVIEMGASHPTDIKKLVTYVEPTCGLITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +GR H++ + + K L++ L + + + E+ + Sbjct: 176 VGRAHLEGFGSFEGVKKTKGELYDYLKAHNALLFLNESNPDLVEMATERNFDRIITYGQD 235 Query: 272 YQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 K T V ++ L G + + N L A + + Sbjct: 236 DTADVKGEVISCCPFLKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLH 295 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G++ + LE R + + T + Y +S++ ++N R + Sbjct: 296 FGVEPHKICHALESYTPTNNRSQLIKTKDNNLIVDA-YNANPSSMKAAIENFRLMEVKNK 354 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 + + G + +I + D + E+ + F + N Sbjct: 355 MAILGDMHELGDATAEEHQRIVDQI--------DASKIENVWLVGENFAKTNCHFRKFAN 406 Query: 445 RIEAIRTAIEMLNK-QDVLVVAGKG 468 E ++ AI + + +++ KG Sbjct: 407 VEE-VKAAIALKKPTEHYILI--KG 428 >gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++ A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV NT L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVER--------LLPALSVPQVVVKNTELALARIAASMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLCSLLGVAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] Length = 477 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 154/457 (33%), Gaps = 46/457 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS D+R I G +FVA+ + DGH F+ QA+ QGA A +V A + ++ P Sbjct: 26 GVSIDTRTIAQGDLFVALKDVR-DGHEFVAQALDQGAAAALV------THRPADVPADAP 78 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +L+V + L + I A+TG+ GK+S ++ + ++ G + Sbjct: 79 LLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKTSTKEMLRAVLEKQGKCHAAEASYN 138 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ LA+ + + + S+ G + T Sbjct: 139 NHWGV----------PLTLARMPAD---ADYAVIEIGMSNPGEITPLSQMTQPHVAMLTT 185 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H+ K + + L A++ D S + A G R + G Sbjct: 186 VAAAHLASFDNLAGIAVEKASIMDG-LEPGGVAVLNGDIETSGILQDHAAKLGARQVLFG 244 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 +K V + ++ S G+++ F +PG NA+ + A+G D Sbjct: 245 ETAPDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVLAVAEALGADPVA 304 Query: 332 VLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNSLEMI-----------LKN 375 + GR N +D A +N ++ N Sbjct: 305 AALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAALEVLAAATPTDN 364 Query: 376 IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + I GR + + G GD +Q M + + + + + E Sbjct: 365 VGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPLMLHLWQALPEE- 423 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468 E + A +++ DV++V G KG Sbjct: 424 ----QRGHWAETAAELVLQAPRLVDAGDVVLVKGSKG 456 >gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] Length = 427 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 162/440 (36%), Gaps = 41/440 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +D+R I G +F A+ G +G+ F QA+ GA +V+ Q T Sbjct: 14 TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET----- 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ DN+ + L AS ILA+TG++GK++ + + + ++ G Sbjct: 69 --ILTDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNL 126 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + V + A+ + + G T Sbjct: 127 NNH----------IGVPLTLLSMTKE---TEIGIVEMGANHLKEIETLCHIAQPNYGYIT 173 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ + + K L++ ++ + + A+DA E+ K+ + + Sbjct: 174 NFGKAHLEGFGSLEGVIKGKTELYKHIVKSDGLLFVNANDAKQLELTKKE-----KRYTF 228 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G +G +K + A + + + L G + +N A + + + Sbjct: 229 GNEGNDCEIKLLEA-----TKELIISYQGQSINSNLIGLYNYHNIAAAIAIGQYFKVSAT 283 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389 V E +E+ R + + N G I +D Y +S+ L N + I++ G Sbjct: 284 KVKEAIEEYIPTNNRSQIIKQN--GHTIILDAYNANPSSMTAALDNFKQTVGNNKILILG 341 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 + + IA ++ I E+ KI+ + + EA+ Sbjct: 342 DMFELGETASKEHQAIADKISSQNIGNTVYLVGENFSKIKTD-----NKHMHLCPTFEAL 396 Query: 450 RTAIEMLNKQD-VLVVAGKG 468 ++ ++ + +++ KG Sbjct: 397 QSNLKHQKPNNATILI--KG 414 >gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] Length = 425 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 32/386 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I IF A+ G+ +G+ + +A+ +GA VV + Sbjct: 16 VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAINNK--------F 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ + L + ++ +TG++GK++ ++ + Q+ + +G + Sbjct: 68 ILVDDVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 LT +A + + G TN Sbjct: 128 H-IGVPLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAE------------PDYGYITNF 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L++ L + + ADD + + G V +G+ Sbjct: 175 GKAHLEGFGSTEGVIQGKSELYKYLTTNQKHVFLNADDPIQESKL------GTYVKKIGF 228 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + K+ + VTI + KD L G + N A + I L+ Sbjct: 229 SSNNSNYFKIELLSADPFVTI--KVKDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLI 286 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 E +E R + + G +I +D Y S+ L N I + IV G Sbjct: 287 KEAIEGYTPANNRSQIL--EQNGYKIILDAYNANPTSMAAALDNFNGIKAAHKIVFLGDM 344 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTD 417 + IA + T Sbjct: 345 FELGTTAETEHQHIADKACKMNFTTT 370 >gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] Length = 452 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 133/377 (35%), Gaps = 42/377 (11%) Query: 1 MK-----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 MK L+ ++ L++ ++I ++ DSR ++ G +F+ +G D Sbjct: 1 MKYFVKDLEKILNAKKINLVD----------NKEITGIAIDSRKVKEGDLFIPFLGENVD 50 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH +I A +GA A + S+ I+ V+++ + + A Sbjct: 51 GHDYIESAFEKGAVASLS--------LKDDFVSDNNIIYVNDSYEAIQGLAKHYLEYLNV 102 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 I+A+TG++GK++ V I + G +N L P I L+ Sbjct: 103 KIVAITGSNGKTTTKDIVTSILETKFKVHKTQGN--------FNNELGVPLTI-----LA 149 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + + A + G +K TN+G HI++ ++ AK + Sbjct: 150 APEDSDILVLEMGADNFGQLDFLSKLVKPDYTIITNIGESHIEFFGSRAGIAKAKFEITN 209 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + ++K + + + + + ++ + Sbjct: 210 GMKKDGFFVYN-----GDEPLLKELVENSSINATSCGENSYNDIILENYTITRDKIDFKL 264 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSR 354 +F L G+ ++N + A + IG+ + + ++ + + R E + Sbjct: 265 SIDKNNFSTTLKGKHNLFNIMFAVAIAKKIGLTNEEIRHAIDNISKITNMRLESITYGED 324 Query: 355 GGRIYVDYAHTSNSLEM 371 I Y + S++ Sbjct: 325 SLIINDAYNASPTSMKA 341 >gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 454 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 165/480 (34%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +Y+ + + ++ + + ++ DSR I+ G +F+ + G + DGH FI Sbjct: 1 MKLS--LYEVAK--VVEAQNIISEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A GA A S P ++V + K A K +++AV Sbjct: 56 EKAFENGAVATFSEKEI----------SGHPYILVKDCLKAFQELAKYYIEKMRLDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S ++ + + + G L P Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKIVLEMGQDHM 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E ++ T +G H+++ +++ A+ ++ Sbjct: 165 GDIHLLSEI------------VQPHIAVVTLIGEAHLEFFGSREKI--AQGKMQITDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G+ + +K + + + Sbjct: 211 SHGILIAPGDPIIDPYLPENQMVI-------RFGENQEIFVNSIEESKNSLRFTTNVLEQ 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G++ NA++AA + + + +LE LE + + R E+ ++ + Sbjct: 264 ALTLPLSGKYNAINAMLAAYVGKLLAVAEEDILEALEHIQLTGNRTEWKKASNGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIA 413 Y ++ +IL+ I G+ I + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFAQIVPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPDDIDHL 383 Query: 414 IVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468 I + E ++ +++ E ++ E + E+L D +++ KG Sbjct: 384 IFYGQDI--EPLAQLASQMYPIGKVFFFKKTEAEDQFEDLYHHVQEILGSNDQILI--KG 439 >gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. syringae B728a] Length = 456 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 85/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 5 MTFRELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 56 DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E L Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ ++ ++ ++ Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNILTFALTDSAADVYASELSRDARGCPAFNLNSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 TARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] Length = 457 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + IN++ DSR I AG +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+ + A+ K +++ Sbjct: 54 FIQTAFDNGALATFTEKE---------LPADQVHILVDDALEAFQKLAAYYLEKTEVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G L K +T S Sbjct: 210 MPDGSLLLVPSDPIVNPFLPSNLEVV-------RFGDGAELTVSDLTEFKDHLTFSTNFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y ++++IL+ I G+ I V G++ M A D Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 + I ED ++ P ++ +A ++ E L + D ++ Sbjct: 383 MVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTADEDQFDAMVKQIKESLGEHDQIL 437 Query: 464 VAGKG 468 + KG Sbjct: 438 L--KG 440 >gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 457 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ +++ +N++ DSR I AG +F+ + G + DGH Sbjct: 1 MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + ++ ++VD+T + A+ K +++ Sbjct: 54 FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G +N + P + Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + L + A+ ++ + Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + G L K +T S + Sbjct: 210 MPDGSLLLVPCDPIVDLFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA+VAA + +G+ +L L L + R E+ + + Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411 Y +++++L+ I G+ I V G++ M A D Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED ++ P ++ +A ++ E L + D ++ Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQIL 437 Query: 464 VAGKG 468 + KG Sbjct: 438 L--KG 440 >gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 88/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR IQ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + P Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ +H + TI+ Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 VAQVQLNLLGALNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388 >gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] Length = 465 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 156/400 (39%), Gaps = 27/400 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I +++ +Q + IN+V +DSR +F+A+ G DGH F+ +A QGA+A++V Sbjct: 9 IAEVAKGTLQGSDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + SN P ++V +T K L L A + + ++ +TG++GK++V V Sbjct: 69 H---------LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I ++ G G + P+ L + + + A+ G Sbjct: 120 SILRQKGNLLATQGNFNNH----------IGVPLTLL---RLKETDQYAVIEMGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDA 251 + K N+ HI+ + + AK +++ L + + I D Sbjct: 167 IAYCASLAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIYQALSEEGTAVINLDSNFADQ 226 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + ++ R + + + Q T + P+PG Sbjct: 227 WIEQFAGLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHN 286 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NALVAA L A G D ++ LE + V GR + I Y + S++ Sbjct: 287 VSNALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKAANGALIIDDTYNASVASVKA 346 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDL 409 + + +++ +++V+ GD + +G+ A + Sbjct: 347 AIDYLTSLSGTKVLVLGDMAELGDESEQYHREVGEYAKEN 386 >gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] Length = 459 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 37/470 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ + QW++ ++ VS DSRH+ G +FV + G + DGH ++ Sbjct: 3 MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A GA A + +S + + D + P+LVV++ L K ++AV Sbjct: 56 PSAFTNGAVASLWASDHEITDQTH------PLLVVNDPLAALQQLGKYYLHKINPIVVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + P+ L S + Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVTKTYANFN----------NEIGVPVTLLNMESNTEAV 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V L + + + + + L + Sbjct: 160 VVEMGM----DRFDQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + D+ + +R + R + G Q +Q E D Sbjct: 216 DGTLVFNGDEP---LLEERVKDLTQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F P+ GE+ + NAL A + + I A + + L + + R E+V + + Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + + +LK I GR I V G + + +A ++ D + Sbjct: 333 VYNSNPTAAKEVLKTIAETPVDGRRIAVLGDMLELGDAAPKLHASLAEEI-DHQKIASVY 391 Query: 420 PRSEDPEKIRAE-IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 E + ++ + I G P + + I L +D++++ Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441 >gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 515 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 73/498 (14%), Positives = 142/498 (28%), Gaps = 58/498 (11%) Query: 5 DLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L L + LS + ++ +DSR +Q G ++VA G DGH FI A Sbjct: 3 ELTAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFIEAA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119 I GA I+ + P ++V + + + A+ + N +L Sbjct: 63 IEAGAILIIAEREIADAQGQPF-----PAIIVADAVQAMGDIAAEVVQLIRANGEVTVLG 117 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + I ++ G + IG + P+ + + + Sbjct: 118 ITGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGE----------VGVPLTVFQ---ADLT 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + A+ G L G+ E L Sbjct: 165 TRFLVIEMGATRIG-HIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALS 223 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTIS 294 A++ D + R G + + + + Sbjct: 224 PTGTAVLNLGDGRVSAMASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVGSNATPSFDLR 283 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH--LEKLHVVPGRFEFVGTN 352 + N L+AA + + R E Sbjct: 284 FPDGSSWPIRSGLIGIHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRWRMERSERA 343 Query: 353 SRGGRIYVDYAHTSNSLEMILK------------NIRTITSGRIIVVFGCG---GDRDQG 397 I Y +S+ L+ N + + R V G G Sbjct: 344 DGVTVINDAYNANPDSMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLGAESIR 403 Query: 398 KRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAI 453 + +G++ + L + + ++ +E I G + + A Sbjct: 404 EHNALGQVVVRLNISRLLVI-----GAEARALHIGAINEGSWGEESVHVPDLDSAYALLQ 458 Query: 454 EMLNKQDVLVVAGK-GHE 470 E L D+++ K GH+ Sbjct: 459 EELKPGDIVLF--KSGHD 474 >gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington] gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl ligase [Rickettsia typhi] gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington] Length = 448 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 22/361 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V +S+ ++ G +F+A+ GN+ DGH +I AI +GA A++VS + D Sbjct: 23 NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++V+++ L A +A+TG+ GK+S ++ + Q + G Sbjct: 76 -IILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + +K + Sbjct: 135 NNYLGL-------------LINLASMADDTEYAIFELGMNHKGEISELVQILKPNIAMIS 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + AK +F+ + I +++ Y+K + + + + S Sbjct: 182 NISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSF 241 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G L + + + + K D P + N + +G D Sbjct: 242 GRSKASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLIIDILGKDIE 301 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + +L + + GR E + I Y + S++ L+ ++ + + + G Sbjct: 302 IAANYLADISITKGRGEII-NIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSIIGE 360 Query: 391 G 391 Sbjct: 361 M 361 >gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 136/393 (34%), Gaps = 24/393 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + DSR ++ G +F A+ G + DGH F+ QA+A GA V++ + + Sbjct: 23 VTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLA-EVLPDGAP 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 T ++ V +TR+ L+ A + + ++ +TG+ GK++ + R Sbjct: 82 PGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLARRFAVLKS 141 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLI 205 G +T P+ L + +E + GL + RL I Sbjct: 142 AGNYNTD----------VGLPLTL-----LDLEERHQVAVLEMAMRGLGEIARLAAIAEP 186 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + + E LP++ AI+ A D + + R Sbjct: 187 DVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRAMAARTRARVL 246 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324 G + + + V G D +PG V AL AA + +A Sbjct: 247 TFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGVA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383 +G+D+A + L + R E I Y + S L +R + S R Sbjct: 307 LGLDAATIAAGLAEARPAALRNEIRQAGPWTLYIDC-YNASPTSTRAALHALRQVAGSRR 365 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 + + G GD G+ A AD+ Sbjct: 366 AVAILGDMFELGDWAVEGHRETGREAARTADVL 398 >gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] Length = 477 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 157/470 (33%), Gaps = 42/470 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA Sbjct: 6 TSSDLLGAMNGRPVGNLPEGITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIALANGAA 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VVS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 66 LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + G + + P+ LA + + Sbjct: 122 KEMLRHMLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDYGVFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G + ++ T++ H+ + AK +FE ++ I Sbjct: 169 NHAGEIRPLTRMVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVI--NR 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306 D+ E++++A + ++ + ++ G+ + Sbjct: 227 DSAQYELLEKAAATAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGA 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YA 363 PG NAL A G D+ V L + GR G +D Y Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYN 346 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADI----AIVT 416 S+ + +R GR I + G + + + +A + D +T Sbjct: 347 ANPASMRAAITLLRDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLT 406 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464 + +R + + + A+ + DV++V Sbjct: 407 -----GTEMAHLRDALPSEVSVVHRDLVSDLT---AYALGAVAAGDVVMV 448 >gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verrucomicrobium spinosum DSM 4136] Length = 460 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 99/467 (21%), Positives = 177/467 (37%), Gaps = 42/467 (8%) Query: 13 ELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E I S + + + V++DSR IQ G +FVA+VG K D H F+PQ GA A Sbjct: 7 ETIASYSGGRLVHGDPAVTCTSVNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAA 66 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 ++VS ++ V +T L A ++ +TG++GK+S Sbjct: 67 VIVSR-----LPENVEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKTSTK 121 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 V + ++ +G + I L + + V Sbjct: 122 DLVAAVLRKKYQVCATLGNFNNH--------------IGLPLTILRMEEGDNCAVLEMGM 167 Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 +H + L GI + A TN+G HI+Y +++ K L +P ++ A+ Sbjct: 168 NHHGEIAVLAGIARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAA-VPHGGVVVLNAN 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308 D +S + R+H RV+ G + + +++ +G+ P+PG Sbjct: 227 DDFSSSIAARSH---ARVVLAGVGEGDVVATLTESGARGSFFSLNFDGRVVVAVHLPVPG 283 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 E V NA +AA + G+ + L ++ + GR + + Y +S Sbjct: 284 EHMVGNAALAAAVGWHFGVVPQDIAAALGEVQLTKGRVQVKFWRGV-TVLDDSYNANPDS 342 Query: 369 LEMILKNIRTIT-SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + LK + + GR + V G G+ + R + G A D E Sbjct: 343 MRAGLKTLAALQIPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVF-----SVGE 397 Query: 424 DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468 + I ++ G G + A+ + E L++ D +++ KG Sbjct: 398 EAALITSQAEKSGGSGDYRNFSSHAAVAACLTEWLHEGDAVLL--KG 442 >gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] Length = 466 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 141/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V ++ Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L A R ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + AS G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ ++ AK ++ +LP + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A +S G ++ + + T+ P GE V NA A Sbjct: 245 AKAHRISTFGVGGDVYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +AIGI +++ LE+ GR F+ + I Y S+ + + Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGL 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D I Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398 >gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] Length = 465 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 92/445 (20%), Positives = 155/445 (34%), Gaps = 38/445 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +FVAI G++ DGH F QA+ GA A++ S + P Sbjct: 31 VVIDSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPV-----------DAPA 79 Query: 93 LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +VV +T L+ A+ + ++ VTG++GK+S + ++ R G + Sbjct: 80 VVVGDTVTALADLATAVCADLPSTTVIGVTGSAGKTSTKDLLARLTARIGPT-------- 131 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + +N + P + L + + A G H G N Sbjct: 132 IAPVESFNNEIGHPLTV-----LKAGEDTRYLVLELSARDAGHISHLARIAPPRIGVVLN 186 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+ + A AK L E LP + A++ ADD + +R Sbjct: 187 VGTAHLGVFGGKDAIAKAKGELVEA-LPADGVAVLNADDPLVAAMARRTDARVAWYGRAE 245 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + T+ + L GE V NAL AA +G+ A Sbjct: 246 SAAVRAEGVTLDDRG-RAAFTLRTPSGAAPVVLRLYGEHAVENALAAAAAAYELGLPVAT 304 Query: 332 VLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IV 386 + E L + R E I Y +S+ + + GR I Sbjct: 305 IAEELSEAEPRSRWRMEVTDRADGVTVINDAYNANPDSMRAAFGALDALAGGRRRFAVIA 364 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G+ +G++A A + + P + + G+P + Sbjct: 365 ALRELGEESAALNEGVGRMAA-GAGLEGLFVVGPDAGPVLAGAGAAVDGVPSATRVTHVA 423 Query: 447 EAIRTAIEMLN---KQDVLVVAGKG 468 +A A + DV++V KG Sbjct: 424 DAQEAAAALSALLVPGDVVLV--KG 446 >gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] Length = 458 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L LI + + + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 6 RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + A+GA A +V + + P L+V +TR L + K + A+T Sbjct: 57 EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+SGK++V + I + G ++ + + P+ L + Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + AS G + ++ + TN G H+ + A E L + Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300 A++ DD RA S+ + + + Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G V NAL AA A+G+ ++ L+ L V GR T S I Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLGGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + SGR ++V G G+ Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370 >gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio japonicus Ueda107] Length = 463 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 141/404 (34%), Gaps = 27/404 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + P + ++ + VS+D+R + AG +F+A+ G + D H F+ QA A Sbjct: 14 MLSQKLPNALKP----QLKGGDAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQAEA 69 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 + A+VV P LVV ++ L A+ ++A+TG+SG Sbjct: 70 RQPCAMVVEKFNPAI--------QLPQLVVADSTLALGQVAALNRSLFTGPLVAITGSSG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + V I G + G + P+ L + + Sbjct: 122 KTTVKTLVASILGECGETLATRGNLNNH----------IGVPLTLLE---LEERHQFAVI 168 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + AS + K N+ HI+ + NAK ++ L A+ Sbjct: 169 EMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSIAGVANAKSEIYGG-LVTGGIAV 227 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DDA++ + +++ +S+ + + + + + + Sbjct: 228 VNIDDAFAPQWIQQLAGKKTLTVSLANPDANCRAEAIEYASEHLAFDLLIHRQRLRIILN 287 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL+AA A+G + L + V GR I Y Sbjct: 288 AQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPVAGRMSRQRGIHNALIIDDSYNAN 347 Query: 366 SNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD 408 S+ + + +++ G+ + +G A Sbjct: 348 PGSVRAAIDVLAQAEDSILVLGDLAELGETATEQHAALGDYAKQ 391 >gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 449 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 73/427 (17%), Positives = 146/427 (34%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNITMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ N + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D P N + +G D Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440 G G+ + + + I + N + D P KI + + I Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIT 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Porphyromonas endodontalis ATCC 35406] Length = 460 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 138/382 (36%), Gaps = 25/382 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V++DSR + +F+A+ G + DG+ F A+A+G VV A + Sbjct: 35 SGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDRA-------ELAQKEA 87 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V+++ L+ A + I+ +TGT+GK++ + + + + +G Sbjct: 88 RCLYVEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNL 147 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + TP V + AS G + G T Sbjct: 148 NNQIGVPLTLLSFTPE-------------MQYGVVEMGASHIGDIAELTAIAEPDFGLIT 194 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+GR H++ + + AK L++ L A + ADD +M+ + Sbjct: 195 NIGRAHLEGFGSFEGVTKAKCELYDWLGQHNGEAWVNADDP---LLMQHSAPLVRTTYGT 251 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + F + + + + L G++ + NAL A + + +G+ Sbjct: 252 SREAFFRASLLDHPLGYFLAFAFYWQRETYRVHTQLVGKYNLPNALAAVAVGLRLGVAPP 311 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR-IIVVF 388 ++ LE R +++ + VD Y +S+ ++N + + + ++ Sbjct: 312 DIVMALEHYSPSNSRSQYIANTPHHNNLVVDAYNANPSSMYTAIENFLSTSGAQAKYLIL 371 Query: 389 GCGGDRDQGKRPIMGKIALDLA 410 G + R + LA Sbjct: 372 GDMFELGSASREEHLALVQRLA 393 >gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 460 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 132/396 (33%), Gaps = 30/396 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+EVS+D+R+I A +FVA+ G + D H F A GA A++VS ++ Sbjct: 19 GSDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGAVALLVSRHLPVE---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRS 140 P ++V +TR L L + L + + LA+TG+ GK++V I Sbjct: 75 -----LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTTVKEMCAAILATK 129 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G G + TP + + A+ G + + Sbjct: 130 GKVLATAGNFNNDIGAPLTLLRLTPE-------------YQYAVIELGANHLGEISYTTN 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 +K NL H++ + + AK +FE L + I A + + Sbjct: 177 LVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASND-RELWAPLL 235 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + S Q F + G V NAL AA Sbjct: 236 ADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAIHLSQLGLHNVSNALAAAA 295 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +G A + + LE V GR I Y + S++ + + + Sbjct: 296 LTSVLGATLAEIKQGLETATNVKGRVAVSQPMVGLRVIDDTYNASVASVKAAIDLLASYQ 355 Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIAL-DLADIA 413 R ++ G+ + +G A D Sbjct: 356 GQRWFILGDMAELGEESENLHREVGLYAQTKGLDKV 391 >gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] Length = 256 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 25/252 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK ++ K+ + + E++I V+ DSR G++FV + G + DGH FI Sbjct: 1 MK--NMTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + QGA A + S P + V++ K L A+ + ++ + Sbjct: 59 PQVMEQGALATLTEEDPS--------SLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + R G + P+ + Sbjct: 111 TGSVGKTSTKETIASVLSRKYNVLKTEGNFN----------NGIGLPLTIFNLTEE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + G + H L I + TN+G H++ ++ AK +F+ L P Sbjct: 158 EVAVLEMGIDHFG-EMHELASISQPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRP 216 Query: 240 KESPAIIYADDA 251 S + DD Sbjct: 217 NASVILNGDDDK 228 >gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacter capsulatus SB 1003] Length = 483 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 90/458 (19%), Positives = 157/458 (34%), Gaps = 45/458 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +S D+R I+ G +FVA+ + DGH F+ A+ +GA +VS Sbjct: 25 TGLSIDTRSIRPGEMFVALKDVR-DGHDFVADALKKGAACALVSR------IPEGCSEED 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V + + L + ++AVTG+ GK+S ++ + G Sbjct: 78 PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKTSTKEMLRAVLSAQGRVHAAEASF 137 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + PI LA+ + + V + G + + A T Sbjct: 138 NNHWGV----------PITLARMPAE---ADFAVIEVGMNHPGEISPLVKMARPHAAMIT 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H++ +T K +F+ L P + + ++ + AG V Sbjct: 185 TVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAKARAGQVVTFG 244 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G L + V GK F PG+ NAL L A+G D A Sbjct: 245 PAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVLALARAVGADPA 304 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + GR GT R +D A + + + + + V Sbjct: 305 VAALDIGLWAPPAGR----GTRERIWLDLIDEAQSFDLFDDAFNA-NPASMEAGLEVLAG 359 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEI-------IHGIPG 438 RD R G+ L D+ + R +E P + +I + + Sbjct: 360 QVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAGPRMRALHE 419 Query: 439 FIEKGNRIEAIRTAIEML-------NKQDVLVVAG-KG 468 + + R E + TA ++ + DV++V G KG Sbjct: 420 ALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKG 457 >gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] Length = 259 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +S+D+R ++AG +F+A+ G + DGH F+ QA+AQGA +++S I S Sbjct: 26 FTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISR------RDIVIPSG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +++ D+TRK L A + ++AVTG++GK++ Sbjct: 80 IAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKDMT 123 >gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia rickettsii] gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 449 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 145/426 (34%), Gaps = 31/426 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLS 269 N+ H+++ + + AK +F + I + Y+K + + + + Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSF 241 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 L + + + + K D P N + +G D Sbjct: 242 GRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDI 301 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + HL + GR E + + Y + S++ L+ ++ + + + G Sbjct: 302 EIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAIIG 360 Query: 390 CG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI-E 441 G+ + + + I + N + D P KI + + I Sbjct: 361 DMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITH 420 Query: 442 KGNRIE 447 + E Sbjct: 421 ITDLFE 426 >gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 480 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ LI SDSR G +FVAI G + DGH F+ Sbjct: 1 MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 + QGA +V P +VV +T L A + Sbjct: 55 AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 106 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+ +TG+ GK++ + + G + +G + I L Sbjct: 107 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 152 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V+ +SH + RL I + + Sbjct: 153 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 212 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293 + L A++ ADD + + A+ Q + V A + + + Sbjct: 213 QGLLPGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 272 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 +G +PG V NAL AA + + G+ V + + P R N Sbjct: 273 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 332 Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401 G + +S++ L ++ S + + G G + Sbjct: 333 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 392 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456 +G A +L AI+ + + + + + + G + A + I++ Sbjct: 393 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 452 Query: 457 N--KQDVLVVAGKG 468 V+++ KG Sbjct: 453 RNHPDAVVLL--KG 464 >gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68] gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68] gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] Length = 483 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ LI SDSR G +FVAI G + DGH F+ Sbjct: 4 MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 + QGA +V P +VV +T L A + Sbjct: 58 AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 109 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+ +TG+ GK++ + + G + +G + I L Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V+ +SH + RL I + + Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293 + L A++ ADD + + A+ Q + V A + + + Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 +G +PG V NAL AA + + G+ V + + P R N Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335 Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401 G + +S++ L ++ S + + G G + Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 395 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456 +G A +L AI+ + + + + + + G + A + I++ Sbjct: 396 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 455 Query: 457 N--KQDVLVVAGKG 468 V+++ KG Sbjct: 456 RNHPDAVVLL--KG 467 >gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] Length = 450 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 138/419 (32%), Gaps = 35/419 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L F ++++ I N +DSR + G IF A+ G K DG+ F+ Sbjct: 1 MYL-NLTLGSFAKIVDGRIIQGNPL--MPFNAFITDSRKLTKGDIFWALKGEKFDGNTFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A+V ++ NT ++ V+NT L A+ + ++A+ Sbjct: 58 QNAVDAGASALVADKFFA----DKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAI 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GKS+ + IC+ SG + +G + + F L Sbjct: 114 TGSNGKSTTKQMLLSICKTSGPARANMGNLN--NQFGLPFSLLEIDSKD----------- 160 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + AS G TN+ H+ + + + + K L + L Sbjct: 161 KFGVFELGASKKGDILEIGKPTLPDVAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFG 220 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D + +K + K + S + + Sbjct: 221 GILVF--NSDDAMLKKLKTEYKGKAISFGFKSGADLQIKNKKNLEFVYKGEVFSFDLQ-- 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + NA AA IA+G+ + + L +P R E + + Sbjct: 277 ------FEKHNKLNAAAAAAGAIALGLYKDNIEKGLAAYEAMPMRMEERKIGNVDFILDC 330 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIV 415 Y S++ + + +G + V G G+ + KI D + Sbjct: 331 -YNANPASMKNAITLLAKRKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFL 388 >gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, 6-diaminopimelate--D-alanyl ligase [Rickettsia montanensis] Length = 449 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 71/427 (16%), Positives = 144/427 (33%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A + +TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ N + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D P N + +G D Sbjct: 241 FGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPG-FI 440 G G+ + + + I + N + D P KI + + Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELMT 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 456 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 136/395 (34%), Gaps = 34/395 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119 Q A+GA +V P LVV +TRK L+ A G + A Sbjct: 56 DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + ++ K TN G H+ + A E + Sbjct: 155 YTSAVIELGASRVGEIAYTVNLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA + ++ H ++ T++ Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + +GR ++V G G+ Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367 >gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] Length = 468 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 78/447 (17%), Positives = 161/447 (36%), Gaps = 38/447 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++DSR ++ G FVAI GN EDGH +I A+ QGA I+ Q S + + Sbjct: 30 FTADSREVRPGAAFVAIRGNAEDGHDYIKDALHQGASLIIAEKGRIPQGLSIR---DRAV 86 Query: 93 LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + V+++ L+ AS P+ ++A+TG+ GK++ +++ + Sbjct: 87 IEVNDSVVDLARMASAYLSACLPDEVIAITGSVGKTTTREVLKKCFE------------G 134 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 F + T L L+ + V + + + G + + T Sbjct: 135 MPLVFGAEKSFNTLIGCSL-TILAMPAGTNVLILEMGTNKPGEIEEMVQYFPPTRCIITE 193 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H++ T + AK E +I+ D + C+ + VG Sbjct: 194 VSSAHLEGLVTLEGVIAAK---MEITRSPHLKTLIFNADNENLANAAGQVYGTCKKIGVG 250 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LVAAGLCIAIG 326 + + + + + + + D + + A L +G Sbjct: 251 VRKGEVRICQSTFDLVENLPRLKTTIRWEDGVISDLYCGLWGTHNSLSLVYALTLYRELG 310 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRII 385 L +LE + +PGR T + I Y +S++ L T+ GR + Sbjct: 311 YPLEEALRNLETMTSLPGRGRVFSTRAGAVIIDDSYNANPSSMKASLNTFSTVEVKGRKL 370 Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + G + + + + +I + D + E+ + ++ I Sbjct: 371 AILGSMKELGKEESVLHEEILRSTHFLDALFLV-----GEEWKVPLEKMPEHERSKIVIV 425 Query: 444 NRIE--AIRTAIEMLNKQDVLVVAGKG 468 ++++ A+ A +M+ D +++ KG Sbjct: 426 SKVQSFAVELA-KMIRSGDGVLI--KG 449 >gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens] Length = 345 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 64/364 (17%), Positives = 121/364 (33%), Gaps = 22/364 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 Q RE I V +DSR I+ G +FV +VG + DGH + + GA A + Sbjct: 1 EQHRELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPA 60 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 A ++VVD+T L A + ++ +TG++GK++ V + + Sbjct: 61 GA-------VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYK 113 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + P+ + + + + + + S + Sbjct: 114 VHKTGGNFNNH----------IGLPLTILEMPAD---TEIAVLEMGMSGRHEIERLSQIA 160 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRA 260 + TN+G H+ ++ AK+ + + P + Sbjct: 161 RPDVAVITNIGEAHLLQLGSRHEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETV 220 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + G H+K + S+ + PL G+ V N L A Sbjct: 221 KPEGLGTFTFGLDHSNDDYPTGMMFHSKGIIFTSLLHPEEGLDLPLLGQHNVINCLAALA 280 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + GI + L LH+ R E + S + Y + S++ + + ++ Sbjct: 281 VARHFGITEENIRTGLTGLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSLK 340 Query: 381 SGRI 384 Sbjct: 341 GYHH 344 >gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 134/395 (33%), Gaps = 34/395 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119 Q A+GA +V P LVV +TRK L+ A G + A Sbjct: 56 DQVAAKGAVGALVEREVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E + Sbjct: 155 YTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEA-KGEILEGVE 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA + ++ + ++ T+ Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 NVQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + +GR ++V G G+ Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367 >gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5] gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5] Length = 445 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 65/401 (16%), Positives = 131/401 (32%), Gaps = 38/401 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L L + + S DSR I+ G +F+ + G K D H FIP A +GA Sbjct: 4 TSQTLAKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAV 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++ + ++ V +T + L A ++ V G++GK++ Sbjct: 64 GVISEREVD-------VPPGKFLIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTT 116 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + G G ++ + + A Sbjct: 117 KELLSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLE-------------TDFWVLEHGA 163 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 S G ++ ++ K T LG +H++ + + +F + I Sbjct: 164 SKRGEIKNLIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMFCRISDNFYAVIPGKF 223 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + K+ G+ L+ +++ V+ VEG+ F P G Sbjct: 224 LDTLFFLPKKI-----------SFGERGELQAQNVEVSEKGVSFEVEGEKFFISVPSLGL 272 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368 + N L + +G E L++ V GR + N + + D Y S Sbjct: 273 VE--NILACFCVLKVLGFTLKEFKEALKEFSPVEGRMKV--FNLKNFILIDDTYNANPVS 328 Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 L +K++ ++ ++ G+ + +G++ Sbjct: 329 LRNAIKSVGAFKRDKVFILGDMLELGEHSKELHEEVGRLLN 369 >gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] Length = 427 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 93/482 (19%), Positives = 183/482 (37%), Gaps = 60/482 (12%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L+ K FP L + KI V DSR I G +F AI +G+ ++ Sbjct: 3 RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ +GA ++ ++ ++ V+NT + A ++A+T Sbjct: 48 EALDKGASLVIADR---------YSGNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I ++ + +G +N + P I + + Sbjct: 99 GSNGKTTTKDIIYAILSKTFQTKKTLGN--------YNNHIGLPFTILNLEEKDEFA--- 147 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + SS G + G TN+G H+++ +T++ F AK L L Sbjct: 148 --VLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYL---- 201 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + + G + K+ S + D Sbjct: 202 ----------PEGCFISSGDDVFLKKIPAIHVGYDERNDYRIFGYQKKDRRSSFQLNDKQ 251 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + PL G+ V NA + + IG+DS + ++L ++ + P RFE Sbjct: 252 YEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIELSPMRFERSEYQGTKYINDA- 310 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + S+ + L ++ T+ I V G G+++ + + A+ + AI+ Sbjct: 311 YNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCSLQAIL-LY 369 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 PR K + IP + + E I+ ++ ++ VL+ A +G + I+ Sbjct: 370 GPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMKLEEIIERE 425 Query: 479 EK 480 EK Sbjct: 426 EK 427 >gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 480 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ LI SDSR G +FVAI G + DGH F+ Sbjct: 1 MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 + QGA +V P +VV +T L A + Sbjct: 55 AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 106 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+ +TG+ GK++ + + G + +G + I L Sbjct: 107 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 152 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V+ +SH + RL I + + Sbjct: 153 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 212 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293 + L A++ ADD + + A+ Q + V A + + + Sbjct: 213 QGLLTGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 272 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 +G +PG V NAL AA + + G+ V + + P R N Sbjct: 273 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 332 Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401 G + +S++ L ++ S + + G G + Sbjct: 333 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 392 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456 +G A +L AI+ + + + + + + G + A + I++ Sbjct: 393 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 452 Query: 457 N--KQDVLVVAGKG 468 V+++ KG Sbjct: 453 RNHPDAVVLL--KG 464 >gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] Length = 455 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 144/422 (34%), Gaps = 44/422 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 E+ L + P E + V++D+R +QAG +FVA+VG DGH F Q Sbjct: 4 FSASLGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQ 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +GA A +V + + P + V +T + ++A+TG Sbjct: 64 AVEKGAIATIVKKGVFSKTVT------LPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITG 117 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ V + G +N + P + + Sbjct: 118 SVGKTTTKELVAAALSQFGTVFKTRAN--------YNNEIGVPKTL-------LGLTTEH 162 Query: 183 THVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + VE GL++ L K TN+G HI ++ A A LP Sbjct: 163 DYAVVEMGMRGLEEIALLTQIAKPTVALITNVGTAHIGRLGSRAAIAQA-KCELLRELPT 221 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ DDA R + + + I + ++ + Sbjct: 222 DGTAVLNHDDARLMSTAARFWSGTQITYGLEGGDVRGQIAGSDIIVDGVKIPL------- 274 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG N L A A+ ++ + + + GR + + + Sbjct: 275 ----PLPGRHNALNLLSAIATLKALNLNWQQLS-QGFSVPMPAGRSQRHQLPNDILLLDE 329 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416 Y + + L+ + R I V G G + ++GK DLA D ++ Sbjct: 330 TYNAGAEATIAALELLADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLIL 389 Query: 417 DD 418 D Sbjct: 390 AD 391 >gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++ A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV +T L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] Length = 447 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 70/384 (18%), Positives = 133/384 (34%), Gaps = 25/384 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R + +S+D+R ++AG I+VA+ G DGH ++ AI +GA A+VV A Sbjct: 20 GDDRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQDALP------ 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P LV+ +TRK L + A L + ++A+TG+ GK+S + + +I + Sbjct: 74 --DCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFKLQPGLL 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + + + + A++ + Sbjct: 132 ATEGNFNNDIGVPK-------------TWFRLTDQHQRVLLELGANAQQEIAWLGSFSRP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N H + + K + + + + DD +K+A + Sbjct: 179 HISLLLNAAEAHTEGFGGLEGVRQGKGEIIDATHSEGGVVL-NKDDPAYNRWLKQAGDRK 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 L + + T+ + D +P+ G+ NA AA Sbjct: 238 IVTFGRHSDADVC-LLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAAATAWL 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ + + + L + PGR E V + G I+ Y S + + + + Sbjct: 297 AGVSALDIAQGLSAMQPEPGRMEPVDSMHGGALIHDAYNANPASFRAAIDVLEDLGEDTL 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406 ++ GD +G A Sbjct: 357 LIAGDMAELGDESANLHREVGLYA 380 >gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 121/252 (48%), Gaps = 3/252 (1%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 TT S I + + LS + + VT ++E SSH L QHR+ + A F+NL RDH+DYH Sbjct: 8 NTTASAIEVQQILSNMLTHKVTFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHG 67 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 Y AK LF + K + + E+ + + G QG ++ Sbjct: 68 DMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWMSA 127 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 +K+ N + + PL G F V N L+ +A+ +L+ KL Sbjct: 128 QKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+GKR Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246 Query: 400 PIMGKIALDLAD 411 P+MGKIA LAD Sbjct: 247 PLMGKIAETLAD 258 >gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] Length = 452 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 147/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGTLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ + N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385 >gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 503 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++ A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV +T L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium chlorochromatii CaD3] gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 476 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 161/479 (33%), Gaps = 35/479 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK + ++ E + +L ++ V DSR + G +FVA+ G + DGH Sbjct: 1 MKAT--LQRNDLEAVGELVFHGEAPPSFELAEPHVVIDSREVSEGGLFVALHGERTDGHR 58 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ GA +V+ ++ + + LVV++T L A R I+ Sbjct: 59 YVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVVEDTVAGLQHLAVRYRNTFSIPIV 118 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+ G++GK++ V + +S +S + P+ L + Sbjct: 119 AIGGSNGKTTTKEMVA---------AVLASDSSAVSMSQGNRNNHLGVPLTLLQMRHSTE 169 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V + + + TN+G +H+++ A+ +L++ Sbjct: 170 RAVVEVGINHPNEMAMLAELV---APTHLLLTNIGHEHLEFLGDLDGVAKAETQLYDYAR 226 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A I ADD + + + V + + + V Sbjct: 227 QHGATAFINADDERLRA-AAEGMPFRIDYSLHEAVDSLVWAEDVTVERDGRLSFLLVTKG 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +N L A + GI + E L L PG G Sbjct: 286 RSEQERLRLHFTGRHNVLNAVAAATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVGG 345 Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410 R+ D Y S+S+ + + + +GR I V G GD + + + Sbjct: 346 VRLLNDTYNANSDSMRRAIDALCDMPCNGRRIAVVGDMLELGDAAEVEH----QAVAHYI 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 ++VT I G + + A + + +L++ DV++V KG Sbjct: 402 QRSLVTKLFTFGTQAAAICRHAPELCYGSYSEHS---ALLDDLLHVLSEGDVVLV--KG 455 >gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] Length = 458 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 81/411 (19%), Positives = 149/411 (36%), Gaps = 26/411 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L + + + + V++D+R + G +F+A+ G DGH F +A Sbjct: 1 MIATTLRTLADAIGATLYGD-DAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARACE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS + P L+V +TR L A+ + + P ++A+TG+SG Sbjct: 60 AGAAALLVSR---------RLPLGVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + G + P+ L + Sbjct: 111 KTSVKEMSAAILAQCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + + + NL H++ + AK +F L + + I Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLAGVARAKGEIFSGLPAQGTAII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + + R G + +V + + + + P Sbjct: 218 NADSNDWDNWQQALPTQRVWRFSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + NAL AA L +++G V + L LH VPGR + + + Y Sbjct: 278 LPGRHNIANALAAAALTMSVGASLTQVRQGLAGLHAVPGRLYPIRLGEQQLLLDDSYNAN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413 S+ + + + R++VV G + +G+ A D Sbjct: 338 VGSMSAAAEVLGAMPGYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKV 388 >gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 134/383 (34%), Gaps = 22/383 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + +S+DSR AG +FVA+ G K D H F+ + ++ Sbjct: 20 DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMD--------GLAARGVAAVVVERVPK 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L+V +TR L A + ++ VTG++GK++V + I + + Sbjct: 72 GMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHF 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + ++ + L + + E + + G+ Sbjct: 132 LATRGNFNNDIGVPLT----VLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTLGL---- 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N R+H ++ + +A + LP A+ ADD Y+ A G R Sbjct: 184 --VNNAQREHQEFMVSVEAVAKENGAVISA-LPANGIAVFPADDPYAPLWRGLATAIGQR 240 Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ G+ A ++ + + F G+ V NAL A + I Sbjct: 241 KVMTFGFSDDADVSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGI 300 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI ++ L V GR + S I Y +S+ ++ + S R++ Sbjct: 301 GIGIDAIVRGLAAFAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEVLAQAPSPRVL 360 Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406 V+ G G+ + +G A Sbjct: 361 VLGDMGEVGNDGRQYHEEVGAYA 383 >gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 466 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 79/451 (17%), Positives = 153/451 (33%), Gaps = 37/451 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ +S D+R ++AG +FVA+ + DGH F+ QA+ +GA A +V + Sbjct: 21 DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQALEKGAGAALV------THRPDDV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L+V++ + L + ++AVTG+ GK+S + + G + Sbjct: 74 AEDAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKTSTKEMLATMLADQGRTHAA 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + P+ LA+ + +H + L Sbjct: 134 VASYNNHWGV----------PLTLARMPRETEFAVIEIGM----NHPGEIAPLARQARPH 179 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + A + E L A++ D A ++ + + A G + Sbjct: 180 VAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEEAERLGVQ 239 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G G+ L + + ++GK + G NAL A +G Sbjct: 240 HLWFGESGQGYRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGALVCVAGLG 299 Query: 327 IDSA---LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTIT 380 D+ VL + R E + + Y S+ L+ Sbjct: 300 GDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVLAATPNPE 359 Query: 381 SGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I G G+ ++ M + ++DI + P + E G Sbjct: 360 KGRKIAYLGDMGELGPKEAELHRGMADLKA-VSDIDCIHCIGPLMANLHAALPEARRG-K 417 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + A+ L+ D+++ KG Sbjct: 418 HYATSSD---ALPDLAGQLSCGDIVL--AKG 443 >gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 464 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 127/380 (33%), Gaps = 25/380 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R +Q +FVA+ + DGH F+ QA+ +GA A +V + ++ Sbjct: 24 SGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALV------THIPDDVAADA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+ + L + ++ VTG+ GK+S + I G + + Sbjct: 77 PLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + + + Sbjct: 137 NNHWGV----------PLTLARMPRDTEYAVIEIGMNHPGEIAPLARQARPHVALVTTVA 186 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + + + A L AI+ AD ++ + A G ++ Sbjct: 187 AVHLEAFESVAGIAHEKAAIFEG----LEAGGTAIVNADLDHTDILRTCAARHGAVIVDF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G L V VT G+ F G N L A C+A+G+D Sbjct: 243 GRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAACVALGVDLD 302 Query: 331 LVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386 + L K V GR E + G +D Y S+ L + R I Sbjct: 303 AAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAALDVLAAAQGARRIA 362 Query: 387 VFGCGGDRDQGKRPIMGKIA 406 G + +R + +A Sbjct: 363 FLGDMKELGPQERAMHAGLA 382 >gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 452 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 145/394 (36%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTL--LGERKV 125 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 L TP + A + + G + + I+ Sbjct: 126 HFTKGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385 >gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis NE061598] Length = 452 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385 >gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 483 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 82/494 (16%), Positives = 151/494 (30%), Gaps = 56/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ LI SDSR G +FVAI G DGH F+ Sbjct: 4 MSVEEIAKAVDGRLIGDADSESRS------TNTVSDSRQAGPGSVFVAIRGEHVDGHDFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115 + QGA +V P +VV +T L A + Sbjct: 58 AKTAGQGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDF 109 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+ +TG+ GK++ + + G + +G + I L Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + V+ +SH + RL I + + Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293 + L A++ ADD + + A Q + V A + + + Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 +G +PG V NAL AA + + G+ V + + P R N Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335 Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401 G + +S++ L ++ S + + G G + Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTS 395 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456 +G A +L AI+ + + + + + + G + A + I++ Sbjct: 396 IGTYAAELGIDAIIAVGSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLA 455 Query: 457 N--KQDVLVVAGKG 468 V+++ KG Sbjct: 456 RNHPDAVVLL--KG 467 >gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 456 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 135/395 (34%), Gaps = 34/395 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119 Q A+GA +V P LVV +TRK L+ A G + A Sbjct: 56 DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ + A E + Sbjct: 155 YTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA + ++ H ++ T++ Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + +GR ++V G G+ Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367 >gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 481 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 80/492 (16%), Positives = 163/492 (33%), Gaps = 52/492 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++++ L+ + E +DSR +G +FVAI G + DGH F+ Sbjct: 4 MSVEEIAKAVDGRLVAG------DGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----- 115 + QGA A +V + + P +VV++T L L A + + Sbjct: 58 DKVADQGAAAAIVDHEVAC--------TTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAF 109 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +++ +TG+ GK++ + + G + IG + P+ + + Sbjct: 110 DLIGLTGSVGKTTTKDLLSALLSTLGPTVAPIGSFN----------NEIGLPLTALRVNA 159 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + A+ G +G H+ +++ AK + + Sbjct: 160 DTR---FFVAEMGANHIGEIARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQ 216 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LLP + + DD + + + + + T++ Sbjct: 217 GLLPGGTAVLNADDDYVVPMAQFASGDVLWFGQGHTRDSEVHADHIAADAADHAEFTMTD 276 Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNS 353 + +PG V NAL AA + + G+ + + + P R + Sbjct: 277 AHGEQVAVHLGIPGRHNVMNALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSR 336 Query: 354 RGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI---M 402 +G + +S++ L +R + + + G + +R + + Sbjct: 337 QGASFELIDDSFNANPDSMKAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASV 396 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLN 457 G+ A L AI+T +P + + G EA R ++ Sbjct: 397 GEYAAGLGLDAIITVGSPSDAHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVFDLAK 456 Query: 458 KQ-DVLVVAGKG 468 D +V+ KG Sbjct: 457 NHTDTVVLL-KG 467 >gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVVPLDARLVGG---------DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V + P LVV +TRK L+ + + A Sbjct: 56 DQVAAKGAVGALVEREVQ--------GAVLPQLVVLDTRKALAQLGAMNRNAFLDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E L Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA N ++ ++ ++ I+ Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALSDSAADVYASELSRDARGCPGFIINSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 TARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIVSNGTRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + +GR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] Length = 453 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 162/460 (35%), Gaps = 39/460 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + + VS+D+RHI +F+A+VG + D H F QA+ GA A++V Sbjct: 9 LAQLTQGQLIGDDAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALLVE 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A L +VV +T+ L + ++ + +A+TG+ GK++V V Sbjct: 69 RALDLP---------VAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q+ G F G + + P + + A+ G Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ N+ H++ + AK +++ L + Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A + Q F V K + + + G+ V N Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVAN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A+ + + G A + L L V GR + + I Y + +++ + Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + T R +V+ G+ +G+ A L ++T ED I +++ Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401 Query: 433 IHGIPGFIEKGNRIEAIRTAIE-MLNKQD---VLVVAGKG 468 G + E I + + N+ + ++V KG Sbjct: 402 CGG----KHFSDHGELIEYIKQNLANENEACHTVLV--KG 435 >gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] Length = 483 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 83/494 (16%), Positives = 154/494 (31%), Gaps = 58/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ++ P R+++ V DSR + +F+AI G + DGH FI Sbjct: 14 MSLQEIAAACGGTYYGGSEFLP-----REVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + QGA V +S + V + + L A ++ + Sbjct: 69 PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + + + G + P+ + Sbjct: 121 SGSVGKTSTKEMIASVLSQKYSVLKTEGNFN----------NEIGLPLTVFNLRKE---H 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S + TN+G H++ ++ AK +F + Sbjct: 168 EIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNEN 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD 299 + + DD N V + H + + N Sbjct: 228 GTIILNGDDDKLRGY---SPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSS 284 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F +PG VYNAL A + A+G+ + +E + GR + Sbjct: 285 FTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPHFTIIDD 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S++ L + R + G G+ ++ +G A+ ++ Sbjct: 345 C-YNANPTSMKASLDVL-AFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLIC 402 Query: 417 DDN-------------------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457 + +E+ A I F K + +R A E+L Sbjct: 403 IGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADF---LREAKELLK 459 Query: 458 KQDVLVV-AGKGHE 470 + D ++V A G E Sbjct: 460 EGDTVLVKASHGME 473 >gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 460 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 149/407 (36%), Gaps = 33/407 (8%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + E+ L + + I VS+DSR IQ G +++ +VG DG LFI + Sbjct: 1 MIERSLGEISRMLKAELCDKAYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 + A A ++ Y +++ + P + VD+T K L A + I+ +TG Sbjct: 61 EDKKAAAFLIDKDYKIKN-----NISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + ++ ++ IG +N + P I LS V Sbjct: 116 SNGKTTTKDLLYEVLKKKFNVQKTIGNL--------NNEIGVPKTI-----LSLREDCEV 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + S G +K TN+G H++ +T++ A E L E Sbjct: 163 AIVEMGTDSFGDISLTTSIVKPDIALITNIGDSHLEKLKTKEGILKA-KMEIVEGLNPEG 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I DD K+ + ++ +K V ++ +S + Sbjct: 222 YFIYNGDDPTIKKDISLYTIKQKKISFGENDDNDFVVKDV----GEKLAKVSFSHDGDVY 277 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 PL G VYN + +G+ + E L ++ R G + D Sbjct: 278 EIPLLGSHNVYNGGACLLISSLLGLSKEQIKEGLLEVTPANNRSRI--IEFDGFDVLDDC 335 Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGK 404 Y SL L + + I+V G G+ ++ +GK Sbjct: 336 YKSNPQSLRSGLNTTKMLGGYDNKILVLGDMLELGESEKDLHYQVGK 382 >gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris RCH1] Length = 478 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 7/153 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + E + +I Q + V SDSR + G +FV I G + DGH F Sbjct: 1 MQLT---PNEMRESLGAGAILGAQG-DATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFA 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + QGA ++ + + ++ I+VVD++ K L A+ + ++ V Sbjct: 57 ADVVRQGARVLIAERDPFNGECPS---ADVTIMVVDDSVKALGRLANLHRMRSKARVVGV 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 TGT+GK++V + Q+ G ++ + Sbjct: 114 TGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQ 146 >gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] Length = 460 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 84/413 (20%), Positives = 147/413 (35%), Gaps = 37/413 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L ELI + I VS+D+R+I + +F+A+ G + D H F Sbjct: 5 QLSQLASVLNAELIG---------ADISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---- 117 A GA+A++VS ++ P LVV +TR L + + L + E Sbjct: 56 TAKDNGAKALLVSKPLPVE---------LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKT 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 LA+TG+ GK++V I G G + TP Sbjct: 107 LALTGSCGKTTVKEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPE----------- 155 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + A+ + + +K N+ H++ + Q AK +FE L Sbjct: 156 --YQYAVIELGANHQNEIFYTTNLVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGL 213 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I + + + A + + +Q + K T+ Sbjct: 214 VQNGTAIINFESNDLALWQPLLAEHQVLTFSTDSHQADYFAEKIKITTQGLACFTMCTPI 273 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L G V NAL AA L +++G A V LE + V GR + +R Sbjct: 274 GKIDINLALAGMHNVSNALAAAALTVSLGATLADVKAGLETMANVKGRLDITEPYARLRL 333 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 I Y + +++ + + + R + G+ +G+ A + Sbjct: 334 IDDTYNASVAAVKAAIDVLASFEGKRYFIFGDMAELGEESDNLHREVGEYAQE 386 >gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] Length = 455 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 85/413 (20%), Positives = 138/413 (33%), Gaps = 27/413 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ + I + + + V +DSR I++G +FVA+VG + DGH F+ + A Sbjct: 1 MLKALYLNEIAGPLQGALAGDDVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA A +V P L V +TR L S + + AVTG+SG Sbjct: 61 KGAVAALVQR--------TMPELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + I + G G + P + Sbjct: 113 KTTVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPE-------------HVGAVI 159 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + AS G + + + TN G H+ + A E LP + A+ Sbjct: 160 ELGASRIGEIAYTVALTRPQVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLPADGIAV 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304 + DD +RA ++ + + T+ + Sbjct: 219 LNRDDPAFDIWQRRAAGRRVLSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQL 278 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G V NAL AA A+G+ + LE L V GR S I Y Sbjct: 279 NLLGRHNVANALAAASAAHALGMPLVGIRAGLESLQPVKGRAVAQFAPSGVRVIDDSYNA 338 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAI 414 S+ + + SGR ++ G G+ + +G A D Sbjct: 339 NPASMRAAIDILAGF-SGRTLLALGDMGELGAWAEEGHRQVGAYAAGKVDALY 390 >gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 500 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 86/490 (17%), Positives = 154/490 (31%), Gaps = 54/490 (11%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + ++ V D+R + +G +FVA+ G K DGH F QA Sbjct: 1 MIVLSLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQA 60 Query: 64 IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDN-------TRKFLSLFASRLYG 111 + GA A++ + +A + + + L+ A + Sbjct: 61 VEAGAVAVLAAREVDAPAIVVPPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVVQ 120 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + E L V G +G S S I Q I P + ++ Sbjct: 121 RLAEGELTVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHP----------W 170 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 AL + + + A G H G N+G H+ +++ K Sbjct: 171 TALRAGAETRHLVLELSARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKG 230 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQ 290 L E LP++ A++ DD + R + + + + Sbjct: 231 ELVEA-LPEDGVAVLNLDDPLVAAMASRTKARVV--FVGESPSAQVRAENITLDDEARAS 287 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349 + + PL GE V NAL AA + + +G + L L R E V Sbjct: 288 FRLITPAGEAGVKLPLHGEHHVGNALSAAAVALELGATPEEIATRLSALERRSARRMEVV 347 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD---RDQGKRPIMG 403 + + S+ LK + +T R V G G+ +G Sbjct: 348 TRPDGVTILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSVTAHDEIG 407 Query: 404 KIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIE 454 ++ + L A + ++ + A + G + A + Sbjct: 408 RLVVRLNIAKLVVIGPE----------AAAMHQGAHQEGSWGEESTLVPDVEAAAALLHD 457 Query: 455 MLNKQDVLVV 464 L DV++V Sbjct: 458 QLRPGDVVLV 467 >gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] Length = 449 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 72/427 (16%), Positives = 146/427 (34%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ N + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D P N + +G D Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440 G G+ + + + I + N + + P KI + + I Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIAKKYFKNVDELIT 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942] Length = 455 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 4/152 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + + + +R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 Y A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 + G + + P Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPD 161 >gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme DSM 15981] Length = 476 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 80/464 (17%), Positives = 145/464 (31%), Gaps = 43/464 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 E+ + +S DSR++ +FV IVG K D H FI QAI GA A+ S+ + Sbjct: 20 GNEEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAVAVFTSAHRDISQVE 79 Query: 84 ATIRS------------NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 I + V++T+ L + ++ +TG+ GK++ Sbjct: 80 KAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTRE 139 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G +++ + + + S Sbjct: 140 MIAAALSAGYAVYRTPGNSNSQVGVPITMSSIPSEA-------------EIAVIELGMSE 186 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + + + TN+G HI+ +Q+ K+ + + + E + DD Sbjct: 187 PGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGM-NPEGILFVNGDDP 245 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ R G + V T K + G Sbjct: 246 LLADIQAEGGRRIIRYGM--SAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQVMGTHM 303 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA+ A + G+D L + GR + G I Y + S++ Sbjct: 304 VGNAMAALAVAAEYGVDMEEAARKLGEFGGYKGRQQIHGFQGM-TIIDDSYNASPVSMKA 362 Query: 372 ILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPE 426 L+ + ++ G R I V G +G+ IA D ++ E Sbjct: 363 GLEVLSSMKPGARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLL-----YGELAA 417 Query: 427 KIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I + G F+ G+ + D ++ KG Sbjct: 418 AIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILF--KG 459 >gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 459 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 94/463 (20%), Positives = 154/463 (33%), Gaps = 61/463 (13%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ++ V+ DSR + G +FVA+ G + DGH F P A+ GA A++ + Sbjct: 22 PQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAAR--------- 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++VD+ L +A E +++A+TG+SGK+S + Q+ QR+G + Sbjct: 73 --PLDVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGAT 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F G + T V + A G + Sbjct: 131 VFTQGSFNNEIGLPITALEATAD-------------TRHLVVEMGARGQGHIAYLTQITP 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHN 262 G+ N+G H + AK L E E + D M Sbjct: 178 PRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAAMSARTK 237 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A V + T+ D + GE QV NAL AA + Sbjct: 238 ARVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNALAAAAVA 297 Query: 323 IAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379 A G+D+A + + L GR + Y ++S L+ + + Sbjct: 298 EAAGMDAAQIGKALTAAESLSEGRMRVTERPDGVTVVNDAYNANADSTAAALRALAHLGR 357 Query: 380 -TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +GR I + G G + +G +A L +V + G Sbjct: 358 ERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLV---------------AVGEG 402 Query: 436 IPGFIEKG----NRIEAIRTAIE------MLNKQDVLVVAGKG 468 + R+EA + A DV++V KG Sbjct: 403 DARVLATEYGPDGRVEATKAAAGEWLSRYNFRAGDVVLV--KG 443 >gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] Length = 473 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 71/364 (19%), Positives = 122/364 (33%), Gaps = 20/364 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 V DSR +Q G IFVA+ G + DGH +I A+GA VVS A+ + Sbjct: 33 VVIDSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS 92 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 L+VD+T + L A + AV G++GK++ + + +G Sbjct: 93 YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELI----------ASVLGVGF 142 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + P+ L + + V + + G + G TN Sbjct: 143 KVHMSRGNRNNHLGVPLTLLQMKRD---TEIAVVEMGINHPGEMELLASIAMPTHGLLTN 199 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVL 268 +G +H+++ Q A+ RL+E L + ADD + + ++RA G Sbjct: 200 IGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNGC 259 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + +S + A AAG + + + Sbjct: 260 GEGVPHAESAALDPFGRPSFMLC-LSQACESVTLSLTGRHNVVNALAAAAAGSYLGLSLR 318 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387 R EF + Y +S+ + + + + GR I V Sbjct: 319 EIKEGLENMIPATGWKRLEFQEAGGV-MIVNDTYNANPDSMRLAIDLLCDLQCSGRKIAV 377 Query: 388 FGCG 391 G Sbjct: 378 LGDM 381 >gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] Length = 473 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 83/494 (16%), Positives = 154/494 (31%), Gaps = 58/494 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ++ P R+++ V DSR + +F+AI G + DGH FI Sbjct: 4 MSLQEIAAACGGTYYGGSEFLP-----REVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ + QGA V +S + V + + L A ++ + Sbjct: 59 PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + + + G + P+ + Sbjct: 111 SGSVGKTSTKEMIASVLSQKYSVLKTEGNFN----------NEIGLPLTVFNLRKE---H 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + S + TN+G H++ ++ AK +F + Sbjct: 158 EIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNEN 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD 299 + + DD N V + H + + N Sbjct: 218 GTIILNGDDDKLRGY---SPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSS 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F +PG VYNAL A + A+G+ + +E + GR + Sbjct: 275 FTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPHFTIIDD 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y S++ L + R + G G+ ++ +G A+ ++ Sbjct: 335 C-YNANPTSMKASLDVL-AFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLIC 392 Query: 417 DDN-------------------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457 + +E+ A I F K + +R A E+L Sbjct: 393 IGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADF---LREAKELLK 449 Query: 458 KQDVLVV-AGKGHE 470 + D ++V A G E Sbjct: 450 EGDTVLVKASHGME 463 >gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563] Length = 427 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 93/482 (19%), Positives = 183/482 (37%), Gaps = 60/482 (12%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L+ K FP L + KI V DSR I G +F AI +G+ ++ Sbjct: 3 RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ +GA ++ ++ ++ V+NT + A ++A+T Sbjct: 48 EALDKGASLVIADR---------YSGNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I ++ + +G +N + P I + + Sbjct: 99 GSNGKTTTKDIIYAILSKTFQTKKTLGN--------YNNHIGLPFTILNLEEKDEFA--- 147 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + SS G + G TN+G H+++ +T++ F AK L L Sbjct: 148 --VLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYL---- 201 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + + + + G + K+ S + D Sbjct: 202 ----------PEGCFITSGDDVFLKKIPAIHVGYDERNDYRIFGYKKKDRRSSFQLNDKQ 251 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + PL G+ V NA + + IG+DS + ++L ++ + P RFE Sbjct: 252 YEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIELSPMRFERSEYQGTKYINDA- 310 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + S+ + L ++ T+ I V G G+++ + + A+ + AI+ Sbjct: 311 YNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCSLQAIL-LY 369 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 PR K + IP + + E I+ ++ ++ VL+ A +G + I+ Sbjct: 370 GPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMKLEEIIERE 425 Query: 479 EK 480 EK Sbjct: 426 EK 427 >gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella buccae D17] Length = 439 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 117/364 (32%), Gaps = 25/364 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR G IF A+ G DG+ F A+ +G V+ ++ N + Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN A + + V G +G + + + I G + Sbjct: 70 ILVDNVLTTFKELAREHRRRFD---IPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGN 126 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + S + V + AS G + +D ++ G TN+ Sbjct: 127 FNNDVGVPK----------TLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + E+ + + Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHNGLLFLNESNPDLMEMAAQRNFGRIISYGRDE 236 Query: 273 QGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + ++ L G + + N L A + + G+ Sbjct: 237 GGNVEGEVIDCSPFLNFRWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGV 296 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + L R + T I Y +S+ + N + + + R + + Sbjct: 297 SPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKMAI 355 Query: 388 FGCG 391 G Sbjct: 356 LGDM 359 >gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 121/254 (47%), Gaps = 3/254 (1%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H Y AK LF + K + + E+ + + G QG ++ Sbjct: 66 HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWL 125 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+G Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244 Query: 398 KRPIMGKIALDLAD 411 KRP+MGKIA LAD Sbjct: 245 KRPLMGKIAETLAD 258 >gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] Length = 478 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 166/468 (35%), Gaps = 54/468 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR I G + AI G+ DGH F+ A+ G V++ ++ + + Sbjct: 27 VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGVAVIAQSHRAE-----FPDD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV + L A + I+AVTG+ GK+S ++ + Q G + Sbjct: 82 LPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTKEALRTVLQAQGKTHASAAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ S + + G + + ++ Sbjct: 142 FNNHWGV----------PLSLARCPSSAR---FAIFEIGMNHAGEIEPLVKLVRPHLAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+++ +A +AK +F L P + + + +++ K + R+++ Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKAKASGVSRIVT 248 Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K L V V + D + +PG N+L G D Sbjct: 249 FGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAVLAATTLAGAD 308 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---TSG 382 AL L + GR GG + + Y S+ + + G Sbjct: 309 LALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNVLGQTAIGPRG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPR--------------SED 424 R I V G + R + G +A +A D+ R +ED Sbjct: 369 RRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALPSAKKGGYAED 428 Query: 425 PEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEM-----LNKQDV 461 K+ ++++ GI G+R++ I TA+E + D+ Sbjct: 429 SAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPSGADADDL 476 >gi|302518532|ref|ZP_07270874.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB78] gi|302427427|gb|EFK99242.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB78] Length = 144 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+++R +T GR+ VV GCGG RD KR MG A LAD A++T DNPRSEDP I A Sbjct: 1 MLRSLRRVTEGRVHVVLGCGGARDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAA 60 Query: 432 IIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 ++ G E+G+ AI + D +++AGKGHE V NG + Sbjct: 61 MLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV-NGVVRPF 119 Query: 484 VDCDIIREILG 494 D ++++E + Sbjct: 120 DDREVLKEAIR 130 >gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51] gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 468 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 80/472 (16%), Positives = 162/472 (34%), Gaps = 39/472 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +++++ +L+ + + V +DSR + G +FV + G K D H F+ Sbjct: 5 MTVREIVAACGGKLL-------CGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A + ++ A + VD+T+ L A+ + ++ + Sbjct: 58 HAAFASGAAAALTQEHTRMEAEEA-------WIAVDSTQLALQHIAAAYRQRFSIPVVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ G ++++ P + Sbjct: 111 TGSAGKTTTKEMTALALSAGYKVMKTGGN--------HNSQIGLP-----LMMFQFSREH 157 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + S G + RL + + TNLG HI +TQ+ K+ + + Sbjct: 158 EAAVVEMGISDFG-EMARLAQVAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFT- 215 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S + DD + + + + V + ++ + Sbjct: 216 QGSVLFLNGDDPMLAGLRGKTGYEAVFYGTAPWCDFRAEGITVQGETTAFRC-LAPGRES 274 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + + P+ G V +AL A + +G+ L + R + N I Sbjct: 275 VEVILPVLGMHHVLDALAALAVAERLGVPLDRAAAALGDYRPLAMRQQIYHVNEV-AVID 333 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + + + L + +GR + V G+ + +G A + ++T Sbjct: 334 DSYNSSPGAAKSSLSVLAGFRAGRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLT 393 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 P ++ + + GI + NR A L+ D ++V KG Sbjct: 394 V-GPEAKAVAEGARSVRSGIDCRVFDHNRQAA-AELKSFLSPGDAVLV--KG 441 >gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 91/476 (19%), Positives = 160/476 (33%), Gaps = 38/476 (7%) Query: 1 MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL + EL + P S DSR + +F A+ G++ DGH Sbjct: 1 MKLTLEQIARWCSAELRSSQPARPA-------TGYSIDSRTLATDDLFFAVKGDRFDGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F+ AI +GA VVS A + + + + +L+VD+ L A+ + + ++ Sbjct: 54 FVAAAIHRGAVGAVVSRARAAELLP--LIDHASLLLVDDPLAALQQLAAAVRRHWGKRVV 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 VTG++GK++ + + G + Q RL T I + + Sbjct: 112 GVTGSAGKTTTKEAIAAVLGAGYRVLKSQGNLNNNFGLPLQLLRLDTEDEIAVIEMGMNH 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + G TN+G+ H++ A + Sbjct: 172 AGEITALARIAMPDWG--------------VVTNVGKAHVENFTDGIAGVARAKYELVQA 217 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP E A + DDAY + R + + G + ++T+S EG Sbjct: 218 LPAEGIAFLNCDDAYVSQF-GRDFHGRVILFGRGPCAHLRVEQLENLGAEGTRLTVSAEG 276 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L GE V NAL A + +A I + LE L R + + Sbjct: 277 RCATLHLHLLGEHNVSNALAALAVGLAAEIPLEIGARALESLRADEKRGQIIPWRGASIV 336 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIA 413 Y +L+ ++ + + R I+V G + A DI Sbjct: 337 NDC-YNSNPEALKAMIATLMGMPGNRHILVAGEMLELGAEAPALHAACGEAAAAAKVDIV 395 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + R +I + +A L + D +++ A +G Sbjct: 396 V----GVRG-AASQIVDAARRAGADAVYVETPEDAGIWLKANLREGDAVLLKASRG 446 >gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 464 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 74/367 (20%), Positives = 127/367 (34%), Gaps = 25/367 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R +Q G +FVA+ + DGH F+ QA+ +GA A +VS + + Sbjct: 24 TGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------IPEGVPEDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+ + L + ++ VTG+ GK+S + I + G + + Sbjct: 77 PLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTKEMLASILETRGKTHASVASY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + +H + L Sbjct: 137 NNHWGV----------PLTLARMPRDTEYAVIEIGM----NHPGEIAPLAHQARPHVGLV 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 A A+ + L AI+ AD ++ + RA G +++ Sbjct: 183 TTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQARGAKIVEF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + L V + + V + F G NAL A C+ +G+D Sbjct: 243 GRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAACVELGVDLD 302 Query: 331 LVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386 + L V GR E + + +D Y S+E L + R I Sbjct: 303 QAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAASAGQRRIA 362 Query: 387 VFGCGGD 393 G + Sbjct: 363 FLGDMKE 369 >gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Micromonospora sp. ATCC 39149] Length = 466 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 158/452 (34%), Gaps = 47/452 (10%) Query: 30 INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + V DSR AG +FVA G K DGH + A + ++ Sbjct: 26 VTGPVEFDSRKAGAGGLFVAFPGEKVDGHDY----------AAAAVAGGAVAVLGTREVP 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+++V + + A + + P ++ +TG+SGK++ + Q+ R G + Sbjct: 76 GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSGKTTTKDLIAQLTVRLGPTVAPP 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLI 205 G + + + Q + +E + G+ R + Sbjct: 136 GSFNNELG---------------HPWTALQADQDTRFLVLEKGARGVGHVRYLCEVVPPR 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ + + AK L E LP + A++ ADD + R Sbjct: 181 ISVVLNVGVAHLGEFGSVENIALAKGELVES-LPADGLAVLNADDPLVDVMAARTAARVV 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R + + + T+ L G QV N+L AA + + Sbjct: 240 RYGEAAHADVRAVDVTLDGRG-RAAYTLVTPEGSAAVRLGLTGRHQVSNSLAAAAVAREL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383 G+ A + L +L +V R V G + D Y S + L+ + + +GR Sbjct: 299 GMPLAELAAALGELGLVSTRRMDVFERPDGVTVIDDSYNANPASTAVALRALAGMRGAGR 358 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKI---RAEIIHGI 436 + V G G+ ++ +G++A +L D +V E I + Sbjct: 359 AVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVV-----GEPAAPIHEGATAVEDWG 413 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ A+ L DV++V KG Sbjct: 414 GESVLLTDQAAAVEVLRSELRPGDVVLV--KG 443 >gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 3/254 (1%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H Y AK LF + K + + E+ + + G QG ++ Sbjct: 66 HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWL 125 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 +K+ N + + + PL G F V N L+ +A+ +L+ Sbjct: 126 SAQKIQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+G Sbjct: 186 KLQAIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244 Query: 398 KRPIMGKIALDLAD 411 KRP+MGKIA LAD Sbjct: 245 KRPLMGKIAETLAD 258 >gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] Length = 460 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 132/370 (35%), Gaps = 23/370 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 I + I ++S++SR+ ++ +F+AI G DGH F Q++ G+ AI+ S Sbjct: 19 KISCFHASKLIIQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGSLAILSEKILS 78 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + P ++V+NT + AS + K +A+TG+SGK+SV I Sbjct: 79 IDH---------PQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILS 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + + L L + + AS G + Sbjct: 130 QVGSTISTKKNNNNSLGV-------------LLTLLRVNEFHQYVVIEIGASQLGEIKFS 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + NL H+ + AK +F L + I + K Sbjct: 177 SKIVNPDVVLINNLFASHLKGFGSFSNLSRAKSEIFFGLSKFNTAVINLDNHDIKHWKHK 236 Query: 259 RAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + S+ + K + + + I L G + N++ Sbjct: 237 IRNLSKVWFFSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIA 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +A L I++G + + L+ H + GR V +S + Y S++ + + Sbjct: 297 SAALSISVGAKIDQIEKGLKNFHPIDGRMYPVYISSEKIILDDTYNSNFGSMKSAIDVLS 356 Query: 378 TITSGRIIVV 387 + R++VV Sbjct: 357 KMPGYRVLVV 366 >gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bryantii B14] Length = 434 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 139/423 (32%), Gaps = 33/423 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR IF+A+ G DG+ F A+ +G ++ + ++ Sbjct: 16 VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEK------EYAVEGDSRY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ DNT A + ++ +TGT+GK++ V + G + Sbjct: 70 ILTDNTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + L + V + AS G + ++ G TN+ Sbjct: 130 D--------IGVPKTL-----LRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L ++ + + + +++++ + Sbjct: 177 GRAHLLGFGSFEGVKKTKGELYDFLAENDALVFLNESNPHLVKMVQQRNINRVITYGQDE 236 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 CA K E + ++ L G + + N L A + + G+D + Sbjct: 237 DANIQGEVLSCAPFLKFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPVQI 296 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 LE R + I Y +S+ L+N + + + + G Sbjct: 297 NHALENYCPSNNRSQLT-VTENNKLIVDAYNANPSSMAAALENFKVMAVSPKMAILGDMR 355 Query: 393 DRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 + KIA L D + E+ EK F EA Sbjct: 356 ELGNVSDAEHQKIADMLKECNIDKVWLV-----GEEFEKTN----CNFTKFHNVDEVKEA 406 Query: 449 IRT 451 IR Sbjct: 407 IRQ 409 >gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] Length = 477 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 158/466 (33%), Gaps = 34/466 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA Sbjct: 6 TSSDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAA 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VVS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 66 LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + G + + P+ LA + + Sbjct: 122 KEMLRHVLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDFGVFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G ++ T++ H+ + AK +FE ++ I Sbjct: 169 NHAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVI--NR 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306 D+ ++++RA A + ++ + ++ G+ + Sbjct: 227 DSAQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGA 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YA 363 PG NAL A G D+ V + GR G +D Y Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYN 346 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ + +R GR I V G + + + +A + + I D Sbjct: 347 ANPASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGI-ADVWL 405 Query: 421 RSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVV 464 + +R + + G+ A+ ++ DV++V Sbjct: 406 AGPEMAHLRDALPPEVSVVHRDVVGDLT---AYALGAVSAGDVVMV 448 >gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 455 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 75/428 (17%), Positives = 139/428 (32%), Gaps = 40/428 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q P + ++ + +DSR I+AG +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQTLNLPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116 + R + L VD+T L A Sbjct: 55 ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TG+ GK++V + + +R + ++ P+ L Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + G K A N R H+ + Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L ++ A+I +D ++ + + G + + G +H + + + + Sbjct: 213 GLGEDGLALIPCEDEHAAVF--QTSSQGHQQQTFGVDSGDVHAENIVLKPLSCEFDLVCG 270 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+PG V+NA A L +A G+ V E L+ + GR Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAGALALAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKGAT 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411 I Y +S++ + + + + R I V G G+ + + M A + Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389 Query: 412 IAIVTDDN 419 A DN Sbjct: 390 AAYFVGDN 397 >gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 518 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 91/488 (18%), Positives = 149/488 (30%), Gaps = 51/488 (10%) Query: 15 INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I + ++ V DSR I G +FVA+ G DGH F AIAQGA ++ Sbjct: 12 ITGGRLSDDADPHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLA 71 Query: 74 SSAY---------------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 + +A + VV K S AS L +H +I+ Sbjct: 72 AKDVGVAAVIMPKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIV 131 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 +TG++GK+S V + +G + G + T Sbjct: 132 GITGSAGKTSTKDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCT-------------E 178 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEE 236 S + A G H G N+G H+ +++ A ++ Sbjct: 179 STKFLVAEMSARGIGHIAHLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALP 238 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AI+ ADD + R + + T+ Sbjct: 239 SAAEGGVAILNADDPLVAGMAPRTRARVVTFSGQHGAADYYATDISLDDVTRASFTLHSP 298 Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-GRFEFVGTNSR 354 + + G QV NAL AA + I GID+A V L H R + Sbjct: 299 HNEPQRVELNVFGAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADG 358 Query: 355 GGRIYVDYAHTSNSLEMILKNI----RTITSGRIIVVFGCGGD---RDQGKRPIMGKIAL 407 I Y +S+ + + R I V G G+ +G Sbjct: 359 VTVINDAYNANPDSMRAGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELA 418 Query: 408 DL-ADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEKGNRIEAIRTAIEMLNKQ---- 459 + DN + + + + E + ++AI + M + Sbjct: 419 RYRVTHLVAVGDNDAMDALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYER 478 Query: 460 ---DVLVV 464 DV++V Sbjct: 479 DARDVVLV 486 >gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 3/252 (1%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DYH Sbjct: 8 NTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHG 67 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 Y AK LF + K + + E+ + + G QG ++ Sbjct: 68 DMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSA 127 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 +K+ N + + PL G F V N L+ +A+ +L+ KL Sbjct: 128 QKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+GKR Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246 Query: 400 PIMGKIALDLAD 411 P+MGKIA LAD Sbjct: 247 PLMGKIAETLAD 258 >gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 133/395 (33%), Gaps = 34/395 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119 Q A+GA +V P LVV +TRK L+ A G + A Sbjct: 56 DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ A E + Sbjct: 155 YTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEA-KGEILEGVE 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA + ++ + ++ T+ Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAAGALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + +GR ++V G G+ Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367 >gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] Length = 466 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPIDA---- 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 N LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 87 -----NIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +L + AI+ D ++ E+ + A + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHIL-PQGVAIVPQQDDFTTEIREAAKS 247 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + ++ + + P GE V NA A Sbjct: 248 HHIMSFGTG---GDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLDDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ L D I Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAQLPLDHII 398 >gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 134/395 (33%), Gaps = 34/395 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119 Q A+GA +V P LVV +TRK L+ A G + A Sbjct: 56 DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+SGK++V + I + G G + P Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + + K TN G H+ + A E + Sbjct: 155 YTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ +D KRA ++ H ++ T++ Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGPRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ ++ L + V GR ++ I Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y S+ + + +GR ++V G G+ Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367 >gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 503 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++ A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV +T L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGIWFEQQLQAQPVQGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373 >gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides salanitronis DSM 18170] Length = 428 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 81/437 (18%), Positives = 155/437 (35%), Gaps = 38/437 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSRH G +F+A+ G +G+ F QA+AQG VV + S Sbjct: 16 VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES--------Y 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ + L A+ + I+ +TGT+GK++ V + + F G + Sbjct: 68 ILVDDCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + A+ G + + + G TN+ Sbjct: 128 H----------IGVPLTLL---RLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNV 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H+ + + K L++ L K + I ++ + G + G Sbjct: 175 GKAHLLGFGSFEGVIKTKGELYDFLREKGNATIFIQNENSYLNAIA----HGLHCVRYGQ 230 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K+ + E + L G + + NAL + + + + Sbjct: 231 ASGLFVSGKLLSCSPFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDI 290 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E L R + V T R I Y S+ L+N R + + +V+ G Sbjct: 291 CEALSTYMPQNNRSQLVDTG-RNKLIVDAYNANPTSMMAALENFRQVQAPHKMVILGDM- 348 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 +G+ +L+ + D R D + + E + ++A++ A Sbjct: 349 -------KELGEASLEEHRKIVGFLDGCRF-DRVMLAGPEFKAVASAYEHFDNVDAVKEA 400 Query: 453 IEMLNK-QDVLVVAGKG 468 +E +++ KG Sbjct: 401 LEKSKPVGFTILI--KG 415 >gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] Length = 504 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 96/496 (19%), Positives = 160/496 (32%), Gaps = 53/496 (10%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L + E ++ ++ + + V DSR I G IF+A+ G + DGH F A Sbjct: 3 ELTTQKIAE-VSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAA 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVD------NTRKFLSLFASRLYG 111 + GA ++V A SN D + A Sbjct: 62 LNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTD 121 Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 + VTG++GK+S + + + +G + G +N + P Sbjct: 122 VLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGS--------FNNEIGLP-- 171 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 AL + A G QH G N+G H+ ++QA Sbjct: 172 ---YTALRAGRDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIA 228 Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIH 278 A ++ A++ ADD + KR R + G G + Sbjct: 229 QAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYAT 288 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLE 337 ++ A+ + G+ + G QV NAL AA + I +GID+A V Sbjct: 289 DIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSS 348 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391 + R + S G I D Y S+ + + GR V G Sbjct: 349 HVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMG 408 Query: 392 --GDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 G+ + +G + A D A++ + + N A Sbjct: 409 ELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENIDGA 465 Query: 449 IRTAIEMLNKQDVLVV 464 + LN QDV+++ Sbjct: 466 VNYLDMSLNPQDVVLI 481 >gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] Length = 472 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 90/461 (19%), Positives = 158/461 (34%), Gaps = 54/461 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R I G +FVA+ + DGH F+ A+ +GA A +V + + Sbjct: 24 SGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDKGAAAALV------THRPEGVADDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V N K L S + ++ +TG+ GK+S ++ + Q G Sbjct: 77 PLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTKEMLRTVLQAQGKIHAAEASY 136 Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + A+ + T + I + + + ++A+ Sbjct: 137 NNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKMAQLDAA---------------- 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T + H++ + K + E P I D + A A + Sbjct: 181 -MITTVAPAHLEAFGSVAEIAVEKAAITE---GLNGPLIANRDIETWDVIRDVAAAAETQ 236 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V G Q L V + + G + G NAL A +C A+G Sbjct: 237 VTWFGAQADAFVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVAVCDAVG 296 Query: 327 IDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-----YAHTSNSLEMI------- 372 D A + GR E + +++ VD + S+ Sbjct: 297 ADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASLEVLAAT 356 Query: 373 --LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKI 428 N+ I GR I V G + + + +A D L + +V PR + Sbjct: 357 QPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRMRSLYDV 416 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468 E G ++E + A +++ DV++V G KG Sbjct: 417 LPEGQRG--QWVEIAGELAG--KAHSLIDAGDVILVKGSKG 453 >gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 3/254 (1%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H Y AK LF + K + + E+ + + G +G ++ Sbjct: 66 HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWL 125 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+G Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244 Query: 398 KRPIMGKIALDLAD 411 KRP+MGKIA LAD Sbjct: 245 KRPLMGKIAETLAD 258 >gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 471 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 67/411 (16%), Positives = 129/411 (31%), Gaps = 36/411 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L+ + + + + + + + V +DSR ++ G +F I G + DGH F Sbjct: 3 MNLEQI-----RDALGAVGTL--GGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + + +GA A+V D R + P+L+V +T L A + Sbjct: 56 AAEVLEKGACAVVAERPPFSMD-EMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTG 114 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TGT+GK++V + + G ++ + T Sbjct: 115 ITGTAGKTTVKELLAHVLSVRGATARNHLNRNNQIGLPLSMLAATGD------------- 161 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +EA G L L + + Sbjct: 162 --ERFWVMEAGISQAADMDELGSVLRPDLAVVLNVGQGHLSGLGDKGVAHYKARLLKHIA 219 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + ++ AD ++ +V + A + + +E ++ Sbjct: 220 RGGVGLVSADYPDLLAEARKNCGELRLFSAVDPAVPYFCEYAGPAGEGRGLYRVRLESRE 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ P G + N + A +G+ SA + E L + RF G + Sbjct: 280 FETEAPFRGAYGAENVIAVAAAAHILGLTSAEIAEGLRTAELPQQRFN---CRRYGRWLV 336 Query: 360 VD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +D Y S ++++ G VVF G+ +G+ A Sbjct: 337 IDDTYNANPLSAGRMVESTAENACGEP-VVFVM------GEMLELGEAAAQ 380 >gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] Length = 466 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 142/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q +A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + +G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] Length = 478 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 7/153 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + E + +I Q + V SDSR + G +FV I G + DGH F Sbjct: 1 MQLT---PNEMREALGAGAILGAQG-DATFASVRSDSRKVAPGDLFVCIRGERFDGHDFA 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + QGA ++ + + ++ I+VV ++ K L A+ + ++ V Sbjct: 57 ADVVRQGARVLIAERDPFNGECPS---ADVTIMVVGDSVKALGRLANLHRMRSKARVVGV 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 TGT+GK++V + Q+ G ++ + Sbjct: 114 TGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQ 146 >gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] Length = 481 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 77/396 (19%), Positives = 142/396 (35%), Gaps = 27/396 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV + A + Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ + + + HG + + ++ Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T + H+ + + AK +FE + A++ DD +++ + A AG + Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ V +T+ + + +PG V N L G +G Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380 D A V+ + L GR + G +D Y S+ + + Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 GR I V G + + + +A + D + T Sbjct: 374 RGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNT 409 >gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. ND132] gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans ND132] Length = 462 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 133/416 (31%), Gaps = 35/416 (8%) Query: 1 MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L E+ L + E + EV +DSR ++ G +F I G DGH F Sbjct: 1 MNL------TLAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEF 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 A A+GA A+V S + P+++V +TR L A+ ++A Sbjct: 55 AALAAAKGACAVVASR--------MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVA 106 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTGT+GK++V + + + ++ + + Sbjct: 107 VTGTAGKTTVKEMLFAVASQKFATAKNYRNFNNQIGLPTSMLKASAD------------- 153 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 Q + + + S G + TN+G H++ + +AK L L Sbjct: 154 QELWIMELGISRRGDMEELAPVASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYLRQ 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I ++ + F + + + D Sbjct: 214 GGRAVISRDYPLLWNAALELVDAPVGFSGRDDAESDFSAAFLGALPDGRGRFRLRTPDGD 273 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P G N A +G+ V+ ++ + P RF G + Sbjct: 274 GELTAPFCGRHYAENLACVAAAAHCLGLTRDDVVGGVQAMAADPQRF--CRKIGGGITVI 331 Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLA 410 D Y S+ L+ R + R +V+ G + +G++ + A Sbjct: 332 DDTYNANPLSMANALRTARELAGERPLVLVLGDMRELGAEAVLRHEELGRVIRETA 387 >gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB056] gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB058] gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB059] gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] Length = 466 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 141/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q +A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKTPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] Length = 504 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 96/496 (19%), Positives = 159/496 (32%), Gaps = 53/496 (10%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L + E + ++ + + V DSR I G IF+A+ G + DGH F A Sbjct: 3 ELTTQKIAE-VTGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAA 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVD------NTRKFLSLFASRLYG 111 + GA ++V A SN D + A Sbjct: 62 LNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTD 121 Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 + VTG++GK+S + + + +G + G +N + P Sbjct: 122 VLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGS--------FNNEIGLP-- 171 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 AL + A G QH G N+G H+ ++QA Sbjct: 172 ---YTALRAGRDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIA 228 Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIH 278 A ++ A++ ADD + KR R + G G + Sbjct: 229 QAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYAT 288 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLE 337 ++ A+ + G+ + G QV NAL AA + I +GID+A V Sbjct: 289 DIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSS 348 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391 + R + S G I D Y S+ + + GR V G Sbjct: 349 HVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMG 408 Query: 392 --GDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 G+ + +G + A D A++ + + N A Sbjct: 409 ELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENIDGA 465 Query: 449 IRTAIEMLNKQDVLVV 464 + LN QDV+++ Sbjct: 466 VNYLDMSLNPQDVVLI 481 >gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium caulinodans ORS 571] Length = 476 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 131/390 (33%), Gaps = 31/390 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +S D+R ++ G F AI G DGH ++ +A+ GA VV++ Sbjct: 26 DVTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALENGASLAVVAADR------VQGLP 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P++VV + L+ + I+AVTG+ GK++ ++ G + Sbjct: 80 DGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTKEALRIALSADGETHASAA 139 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + P+ LA+ V + G + ++ Sbjct: 140 SYNNHWGV----------PLSLARFPRSAR---YGVFEVGMNHPGEITPLVRMVRPHVAV 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T + HI + +AK +F+ L A++ D+ ++ A G + + Sbjct: 187 ITTVEAVHIAQFSGIEEIADAKAEIFDG-LEPGGTAVLNRDNPLFDRLVASARAKGVKNI 245 Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + LK V V V G F +PG V NAL +G Sbjct: 246 VSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAVRLLG 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---T 380 D AL L +L PGR V + GG + Y S+ + + Sbjct: 306 GDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRTPVGP 365 Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIAL 407 GR I V G G + + Sbjct: 366 RGRRIAVLGDMLELGTEGAQHHRELAEALE 395 >gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] Length = 464 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + LI + + + I+ VS+D+R++ G ++VA+ G + DGH F A A+G Sbjct: 2 KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++V + P ++V ++ L+ A+ + + A+TG++GK+ Sbjct: 62 ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKT 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SV S + I Q+ + + + ++N + P + A + + + Sbjct: 113 SVKSLLLSILQQVARHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 A G + D + N+ H++ + LP + A+I Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DDAY + + R + Y + + + A Q T+ + + Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVL 283 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG V NAL AA L +A GI+ ALV L VPGR + G + D + Sbjct: 284 GLPGRHNVSNALAAASLALAAGIELALVAAGLADAQPVPGR-QIAHQLHNGAVLVDDSYN 342 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + + +V G + + + Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383 >gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct] Length = 487 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA GA+AI+VS L Sbjct: 44 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 97 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 98 ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 152 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 153 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 200 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ ++N+++A +A Sbjct: 258 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 317 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 318 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 377 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 378 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 411 >gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] Length = 454 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 75/486 (15%), Positives = 148/486 (30%), Gaps = 65/486 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL F E+ + + Q+ + I+ + DSR I +G +F+ + G + DGH Sbjct: 1 MKLS------FHEIADVVGALNDVSQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A GA A FS + P ++V + A K +++ Sbjct: 54 FIPTAFENGAVA----------TFSRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G L P Sbjct: 104 AVTGSNGKTTTKDMIHDVLATTYKIYKTQGN-YNNEIGLPYTVLHMPDSTQKLVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + + + + L G +A+ + Sbjct: 163 HLGDIDLLSKIAQPKIGIVTLIG----------------------EAHLEFFGSREKIAQ 200 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG 297 K A A D + N G + + K ++ +V Sbjct: 201 GKMQIANGMAKDGTLIVPADKIINDYLPDNQKVVRFGPDQDIFLTELVERKDSLSFAVNF 260 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D P+ G++ NA++A + G+ + L+ L + R E+ ++ Sbjct: 261 MDGLIELPVTGKYNATNAMLATYVGQLEGVADEAIRSALKNLVLTKNRTEWKKASNGADI 320 Query: 358 IYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL-DLA 410 + Y +++ + G+ I + + + M + + Sbjct: 321 LADVYNANPTAMKLILETFLTLPANEGGKKIALLADMKELGKDSVQMHSQMIRALNPEDL 380 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 D I ED ++ E+ + ++ +L D + Sbjct: 381 DTLIC-----YGEDIAELAQLASQVFPMGKVYYFKKTAEEDQFADLVKQVQTILQPADQI 435 Query: 463 VVAGKG 468 ++ KG Sbjct: 436 LL--KG 439 >gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter hydrossis DSM 1100] Length = 434 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 69/406 (16%), Positives = 140/406 (34%), Gaps = 33/406 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G IF A+ G+ +G+ + A+ QGA VV + + Sbjct: 16 VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPA--------LATQDRC 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+ L A + I+A+TG++GK++ + + + G + Sbjct: 68 IVVDDVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + + A+ G + G TN+ Sbjct: 128 H----------IGVPLTLLQ---LDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNI 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV 270 G+ H++ + K L+ L + A + D+ + E+ R R Sbjct: 175 GKAHLEGFGGIEGVKKGKSELYRYLAETDGLAFVNNDEPFLVELSSGVRKRIFYERSDDP 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 K + + + + + + L GE N A L + Sbjct: 235 APNHKPYEVVLLQLQPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGK 294 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + +E + R ++V + Y +S+E+ L++ + + I + G Sbjct: 295 KIKAAIENYNPNMNRSQWVSWG-TNSILLDAYNANPSSMEVTLRSFSESPASQRIAILGD 353 Query: 391 G---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI 432 G+ + + ++A L + I+ + I ++ Sbjct: 354 MFELGESSAVEHERVAQLAQSLNFEQVILV-----GQHFAAIARQL 394 >gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4] gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855] gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei 5_1_36/D4] Length = 432 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ + QA+ +G + VV D I Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ K L A+ K I+ +TGT+GK++ + + Q+ + G + Sbjct: 70 LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + + A+ G + ++ G TN+ Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTCIVEPDYGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L+E L I D ++ + + + Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K+ A EG+ F+ L G + + NAL A + + S + Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E LE R + + I Y S+ L+N R + +V+ G Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353 Query: 393 DRDQGKRPIMGKIA 406 + + KIA Sbjct: 354 ELGETSHEEHQKIA 367 >gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G +++A+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV+N L+ A+ + +LA+ Sbjct: 55 ADAVARGASGLLVGR--------LLPALSVPQVVVENAELALARVAAGMQRDRATRVLAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I Q +G G T + ++N + P + A + + Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ + + G I +++ Q T+ Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLP V NAL A GL + GI ++ L + H V GR + T G Sbjct: 278 QGEAQVALPLPARHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + D + + + G +V G + Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373 >gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] Length = 475 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 141/402 (35%), Gaps = 27/402 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 VS+DSR G +FVAI G++ D H F+P A+ A++++ Sbjct: 29 VTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR--------TPQD 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L V +TR L A K ++AVTG++GK++V + I + + ++ Sbjct: 81 WTVPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 140 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ P+ L ++ + V + + G + Sbjct: 141 ATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETLELAKIAEPTVA 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N R+H ++ T +A L E A+ ADDAY+ A + Sbjct: 191 VVNNAQREHQEFMATVEAVALEHA-SVIHALTPEGVAVFPADDAYASIWRVAATGSRIMD 249 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + V ++I + + G+ +NAL A +A G+ Sbjct: 250 FALNSAERITEA-AVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALAATSAALAAGV 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 + LE V GR + G + D Y +S+ + + + + R Sbjct: 309 SLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLASRAAPR 368 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 ++V+ G GD +G A D D R Sbjct: 369 VLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRD 410 >gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 458 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 84/469 (17%), Positives = 165/469 (35%), Gaps = 40/469 (8%) Query: 11 FPELINQLSIFPMQWRE---RKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 EL+ + + + I E+ +DSR + G +FV ++G K DGH +I A Sbjct: 5 IQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKG-LFVPLIGEKFDGHDYIDDVKAM 63 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A + S + + V++T+K L A K I+A+TG+ GK Sbjct: 64 GALATLTSKKNDSVH------QDLITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ V + + + +G +N + P + V+ + Sbjct: 118 TTTKEMVAAVLETTLKVHKTVGN--------YNNEIGVPK-----TMFALSEDDQVSVIE 164 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G +K TN+G HI++ ++++ AK+ + E L P+ + I Sbjct: 165 MGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKPEGTVII- 223 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D K+ + + + V + + F P Sbjct: 224 -NGDEPLLMGKKQDNW----ITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPS 278 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAH 364 PG NAL+A + + I +++ + R + G +D Y Sbjct: 279 PGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKMRMNIT---NVGNFTVIDDTYNA 335 Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420 +S+ +K + T R I + G G + +G+ + T + Sbjct: 336 NYDSMVAAMKVLGNYLTKNRKIAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDA 395 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + + I + N+ I+ + +N D+++V A +G Sbjct: 396 AAYITDAIINSPNNKNVTSKHFKNKELFIKEWSQYINAGDIVLVKASRG 444 >gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 457 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 23/382 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ L+ + + I+E++ +S I +F+A++G + DGH F QAIA Sbjct: 1 MIPFSLHEIAPVLNAKYIG-MDLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA+A++V+ I + P L+V +TR L + A + K ++A+TG+SG Sbjct: 60 AGAQALLVNH---------HILLDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + G + + PI L + Sbjct: 111 KTSVKEMTTSILKECGHTIATQGNFNNM----------IGVPITLL---RLTKKNNFAII 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + SS G + N+ H+ ++ K ++F EL + I Sbjct: 158 ELGTSSPGELVQLSKIVAANVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGII 217 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A S + G + + N+ + + + Sbjct: 218 NADSHALSLWRKPLKGKSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLS 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G V NAL A+ L ++G + + V+ LE + +PGR + + Y Sbjct: 278 MLGTHNVANALAASALAFSVGANLSEVVYGLENIKTLPGRLFPIILGEGKLLLDDTYNSN 337 Query: 366 SNSLEMILKNIRTITSGRIIVV 387 S+ + + T+ RI+VV Sbjct: 338 VGSMISAIHVLTTMPGYRILVV 359 >gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] Length = 449 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 71/427 (16%), Positives = 146/427 (34%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D + P N + +G D Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440 G G+ + + + I + N + + P KI + + I Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELIT 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] Length = 477 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 163/468 (34%), Gaps = 38/468 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA Sbjct: 6 TCSDLLAAMNGRPVGNLPEGIIGISIDSRTIAKGEAFFAIRGDRVDGHDYAGIALANGAS 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VVS A R P++VVD+ + + + ++AVTG+ GK++ Sbjct: 66 LLVVSEG----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + G I + P+ LA + + Sbjct: 122 KEMLRHVLSPLGRVHASIASFNNHWGV----------PLTLA---RMPETTEFGIFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + HG + ++ T++ H+ + AK +FE ++ I Sbjct: 169 NHHGEIRPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVI--NR 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D+ E+++RA A + L + + + G+ + Sbjct: 227 DSPQFELLERAAVAAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGA 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYA 363 PG NAL G D VL L + GR GG + + Y Sbjct: 287 PGRHIAENALAVVAAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYN 346 Query: 364 HTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ + + GR I + G + + + +A + + I TD Sbjct: 347 ANPASMRAAISLLRAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGI-TDVWL 405 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVV 464 D +R + PG + +R EA+ A+ + DV++V Sbjct: 406 AGPDIAHLRDAL----PGEVSVVHR-EAVGDLTSYALGAVAAGDVVMV 448 >gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 446 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 77/443 (17%), Positives = 141/443 (31%), Gaps = 50/443 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR ++ G +F+A+ G + DG+ FI A+ +GA V + + N + Sbjct: 21 IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNRS----------SDNPAV 70 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + +K L A+ + +A+TG++GK++ + I G G + Sbjct: 71 FFHPDPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLN 130 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T PI + + S L+ S G D + N Sbjct: 131 TEIGI----------PIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLN 180 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H + E L K+S AI DD + ++ Sbjct: 181 VGTAHRGNFNDETELLQE-KCSIFETLQKDSTAITNGDDKRIRSMISELSCKKL------ 233 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA- 330 + G+ K+ + T + L+ G + Sbjct: 234 FFGQRNGDLKIMKFDYSKNNTFVAFKAFGEMKMAKLKGIWNSGQLLDFGAAYLTALSLKI 293 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389 ++P F N G + D Y + S+E +K+I + R V G Sbjct: 294 EEPLLNINRIILPFNNRFSVENIAGIILINDCYNSSLESVESAIKSIAKLKKERTFAVVG 353 Query: 390 ---CGGDRDQGKRPIMGKIALDLADIAIV-TDD------------NPRSEDPEKIRAEII 433 G + +G++ D ++ T D + +S +PE++ + Sbjct: 354 SILEQGKYSKKTHEELGRLLN-FFDHIVLYTKDTQVEAVQNTANIDFKSSNPEEVAEWLK 412 Query: 434 HGI---PGFIEKGNRIEAIRTAI 453 K +R A+ AI Sbjct: 413 KNCRYGDLVYFKASRGVALEEAI 435 >gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + + + D R + G +FVA G DGH + QA Sbjct: 1 MIPLSLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA A++ S + P +VV++ R L A+ + + E ++ VTG Sbjct: 61 QAGAVAVLGSRPTA-----------LPTVVVEDARTALQALAADVVARLRERLTLVGVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + G +N L P L ++ Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATKGNL--------NNELGVP-----LTMLRAGAATRF 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + A G D + L N+G H+ ++ A L Sbjct: 157 LVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA-EGKGELVRGLVPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ ADD + + + + + T+ Sbjct: 216 TAILNADDPRVVAMRSLTDGPVLTFGHAEDADVRVRDLTLDRLG-RPSFTLRTADATARV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G Q NA A ++ G+ L + R E + Y Sbjct: 275 KLPIVGAHQALNAAAAVAAALSAGLTLDAAAAPLATASLTRWRLELRDIAGGVTLLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S L + I GR + V G GD + + +G+ A AD +VT Sbjct: 335 NASPGSTRAALDALAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAARAD-VVVTV-- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E + + G + + A+ L DV++V A +G Sbjct: 392 --GEAVRPLA--VGAG-ERAVAVADNGAAVDWLRGHLAPGDVVLVKASRG 436 >gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] Length = 456 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 71/424 (16%), Positives = 142/424 (33%), Gaps = 48/424 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + ++ + +N++ DSR I G +F+ + G + DGH Sbjct: 1 MKLS------LHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A +GA A P L+V++ A K +++ Sbjct: 54 FIELAFEKGAAATFSEHPIE----------GKPYLLVNDCLHAYQTLAKYYIEKMRLDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK+S ++ + + + G L P Sbjct: 104 AVTGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDETEKVVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E + Q R+ + ++A + A+ ++ Sbjct: 163 HMGDIHLLSE-----IAQPRIAVLTIVAEAHLEFFGSREK---------IAQGKMQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D + G+ + +K +T + Sbjct: 209 MDSHGILLAPGDPIIDPYLPDNQMVI-------RFGEGEEIFVKDIKEDKNSLTFTTNVL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D PL G++ NA++AA + + + ++E LE + + R E+ + + Sbjct: 262 DQAVTLPLSGKYNATNAMIAAYVGKLLAVSDEDIVEALESVQLTKNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I + G+ I V + + K+ + L+ D Sbjct: 322 SDVYNANPTAMQLILETFSNIPNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEKID 381 Query: 412 IAIV 415 I Sbjct: 382 TLIF 385 >gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] Length = 465 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 81/416 (19%), Positives = 151/416 (36%), Gaps = 34/416 (8%) Query: 7 IYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 + PE + + + I + +DSRH + G +F+A+ G + D H F+ Q Sbjct: 11 LEPWTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQV 70 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 QG + +V + + LVV +TR L + ++ ++A+TG Sbjct: 71 ATQGCQIAIVEHPIDV---------DIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTG 121 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + I R + G + L P L Sbjct: 122 SSGKTTTKEMLGSILSRLAPTLITRGNLNND--------LGVP-----MMLLELRKEHQY 168 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + AS G + + ++ N+G H+ ++ AK ++ +LP+ Sbjct: 169 AVMELGASHQGEIDYTSNLVQPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGV 228 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + ADD ++A QG ++ ++ + + Sbjct: 229 AIVPAADD----FTADIRNSAQAHSNLSFGQGGDVYATEIELKPQSVRFNLHTPQGQRVV 284 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P GE V NA A +AIGI+ ++E LE+ GR F+ + I Y Sbjct: 285 NLPFAGEHNVQNATAATAFALAIGIELDDIVEGLEQAQGAKGRLNFIQHQNH-LFIDDTY 343 Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIV 415 S+ + + +++V+ G GD + +G+ LA D +V Sbjct: 344 NANPTSMRAAAQVLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVV 399 >gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] Length = 449 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 69/427 (16%), Positives = 144/427 (33%), Gaps = 33/427 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + + + G + + +K T Sbjct: 135 NNKLGMFINLASMADD-------------TEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A K A+I AD +++ + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHS 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + + +QV + K D P N + +G D Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + + Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440 G G+ + + + I + N + + P KI + + I Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELIT 419 Query: 441 EKGNRIE 447 + E Sbjct: 420 HITDLFE 426 >gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine bacterium HP15] Length = 462 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 89/454 (19%), Positives = 161/454 (35%), Gaps = 46/454 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 VS+D+R ++ G +FVA+ G DGH F+ QA+ +GA +VV + Sbjct: 22 DLASVSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDTP------- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P LVV+ T + L+ A+ + ILA+TG+SGK++V I + G + Sbjct: 75 -DTNLALPQLVVNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMGKT 133 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + +P + + AS G H + K Sbjct: 134 LSTKGNLNNHIGVPLTLFGLSPE-------------HQYGVIELGASGLGEIAHTVALAK 180 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN G H++ + + AK + + + + D A+++ + Sbjct: 181 PRVAILTNAGEAHLEGFGSYENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRAGARR 240 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V +G + + + + +G L G+ + N L+A Sbjct: 241 VAGVSRLGAEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLAIAATR 300 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G ++ L + V GR + + + I Y +S++ L + +G+ Sbjct: 301 ELGASDQAIVAGLASVAPVKGRLQVLELSPEMTLIDDSYNANPSSMKAALGVLAG-RAGQ 359 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G G + +G A + ++T P E G Sbjct: 360 KIAVLGAMAELGAKANALHREVGVCAREHGIDRLITV-GPGCEGYAD-------GFGEST 411 Query: 441 EKG-NRIEAIRTAIEMLNKQD-----VLVVAGKG 468 E G + +A+ +AI D ++V KG Sbjct: 412 ELGLSHEQAVESAI-----GDKNTPLTVLV--KG 438 >gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTS 151 Q G +G Sbjct: 120 AQALDALGQHCGIVGTLG 137 >gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + + + D R + G +FVA G DGH + QA Sbjct: 1 MIPLSLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA A++ S + P +VV++ R L A+ + + E ++ VTG Sbjct: 61 QAGAVAVLGSRPTA-----------LPTVVVEDARTALQALAADVVARLRERLTLVGVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + G +N L P L ++ Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATKGNL--------NNELGVP-----LTMLRAGAATRF 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + A G D + L N+G H+ ++ A L Sbjct: 157 LVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA-EGKGELVRGLVPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ ADD + + + + + T+ Sbjct: 216 TAILNADDPRVVAMRSLTDGPVLTFGHAEDADVRVRDLTLDRLG-RPSFTLRTADATARV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G Q NA A ++ G+ L + R E + Y Sbjct: 275 KLPIVGAHQALNAAAAVAAALSAGLTLDAAAATLATASLTRWRLELRDIAGGVTLLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + S L + I GR + V G GD + + +G+ A AD +VT Sbjct: 335 NASPGSTRAALDALAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAARAD-VVVTV-- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E + + G + + A+ L DV++V A +G Sbjct: 392 --GEAVRPLA--VGAG-ERAVAVADNGAAVDWLRGHLAPGDVVLVKASRG 436 >gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] Length = 460 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 81/413 (19%), Positives = 145/413 (35%), Gaps = 37/413 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L ELI + I VS+D+R+I + +F+A+ G + D H F Sbjct: 5 QLSQLASVLNAELIG---------ADVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---- 117 A GA+A++VS ++ P LVV +TR L + + L + E Sbjct: 56 TAKENGAKALLVSKPLPVE---------LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQT 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TG+ GK++V I G G + TP Sbjct: 107 VALTGSCGKTTVKEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPE----------- 155 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + A+ + + +K N+ H++ + Q AK +FE L Sbjct: 156 --YQYAVIELGANHQNEISYTTNLVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGL 213 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + I + + A + + +Q + + T+ Sbjct: 214 VQNGTAIINLESNDLALWQPLLADHQVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPI 273 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L G V NAL AA L +++G A V LE + V GR + + Sbjct: 274 GKIDINLALAGIHNVSNALAAAALTVSLGATLADVKAGLETMANVKGRLDITEPCAGLRL 333 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 I Y + +++ + + + R + G+ +G+ A + Sbjct: 334 IDDTYNASVAAVKAAIDVLASFEGKRYFIFGDMAELGEESDNLHREVGEYAQE 386 >gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 509 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 76/497 (15%), Positives = 146/497 (29%), Gaps = 62/497 (12%) Query: 14 LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 I S+ + + ++ V DSR + G +FVA+ G + DGH F +AI QGA A++ Sbjct: 11 AITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVAVL 70 Query: 73 VSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYGKHPENI-- 117 + + + + ++ LS A + + Sbjct: 71 AARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQGL 130 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + VTG++GK+S + I + G + G + AL Sbjct: 131 DIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPY-------------TALR 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRL 233 + A G +H + G N+G H+ +++ A ++ Sbjct: 178 CDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIE 237 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 A++ ADD + + R + ++ + Sbjct: 238 ALPAAADGGVAVLNADDPFVSSMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPS 297 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEF 348 + + + G+ QV NAL AA I G++ A+V R + Sbjct: 298 FTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSAHRMDV 357 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD---RDQGKRPI 401 I Y +S+ + R I V G G+ I Sbjct: 358 RTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRI 417 Query: 402 MGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLN 457 +G + D + + + + + A+ + + Sbjct: 418 LGSVLSKYHVDYLVAVGEGAHT---VAMVEAAHAHGIQTELCPDIEAATAAVENILRVAP 474 Query: 458 KQ----------DVLVV 464 DV++V Sbjct: 475 AGVEDWSARAAKDVVLV 491 >gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] Length = 448 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 152/472 (32%), Gaps = 54/472 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ + + L Q P +++ V++D+R ++ IF+A G DGH F Sbjct: 1 MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ QGA A +V TP LVV +T + I+A+ Sbjct: 61 ESAVQQGAIAAIVDHPIDAA---------TPQLVVPDTLVAYQRLGQWWRQQFQIPIIAI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + S +G ++ + P L + Sbjct: 112 TGSVGKTTTKELI----------SAVLGTAGSVLKTEANYNNEIGVPKTLLGLTAD---H 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + G + G TN+G HI +++A A +P Sbjct: 159 DYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSREAIAQA-KCELLAQMPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ES A++ AD++ E + + + L + D Sbjct: 218 ESLAVLNADNSLLIETAQTVWSGAQVTYGLDSGDLQGQLADQTL-----------QVADH 266 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PLPG N L A + + +D A + L + GR + + + Sbjct: 267 SFPLPLPGAHNALNYLAALAIAQHLHLDLAPLQ-QGISLELPSGRARKLTLPNDVVVLDE 325 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y S++ L + R I V G G+ +G++ L D ++ Sbjct: 326 TYNAGLESMQAALHLLAQTPGERRIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLIL 385 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLV 463 D P + G A A+ + + D L+ Sbjct: 386 DQGPEG-------TALAAG---TTTVPTEQFAEHQALMDYLDQHIQPGDRLL 427 >gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] Length = 468 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 143/395 (36%), Gaps = 35/395 (8%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E I + +DSRH +AG F+A+ G + D H F+ Q + QG + +V + Sbjct: 33 PEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQGCQVAIVEQPLDV------ 86 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + L+V +TR L + ++P+ ++A+TG+SGK++ + I R + Sbjct: 87 ---DIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTTKEMLGSILSRLAPTL 143 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + P + + AS G + ++ Sbjct: 144 VTRGNLNNDLGVPMMLLELRPE-------------HQYAVMELGASHQGEIDYTSKLVQP 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+G H+ + A + + + AI+ ADD ++ ++ + Sbjct: 191 HVAGILNIGTAHLGEFGGRDGICRA-KSEIYQHIAVDGTAILPADDDFTDQIKQAIQTQK 249 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + Q I+ V + + P GE V NAL A +A Sbjct: 250 ---MLSFGQDGEIYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAFALA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG 382 IGID +++ L GR F G +++D Y S+ + T Sbjct: 307 IGIDLNNIVQGLSAAQGAKGRLNF---IQHGHHLFIDDTYNANPGSMRAAAGVLAQQTGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAI 414 +++V G GD + +G +A + D + Sbjct: 364 KVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIV 398 >gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 318 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 11/125 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +S+D+R I+ G +F+A+ G DGH F+ +A +GA A +VS + Sbjct: 27 SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSE---------GKYKSF 77 Query: 91 PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++V +T K L AS ++AVTG+ GK++ + + + G+S G Sbjct: 78 PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137 Query: 149 PTSTI 153 + Sbjct: 138 NLNNN 142 >gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 455 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 72/426 (16%), Positives = 139/426 (32%), Gaps = 44/426 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + +N++ DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G L P Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + + L G + + A+ ++ Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ + G + L K +T + Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDYQELNVTDIREEKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++E LE + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + ++ L+ D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383 Query: 414 IVTDDN 419 + D+ Sbjct: 384 VFYGDD 389 >gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 454 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 138/396 (34%), Gaps = 40/396 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +Y+ + + ++ + + ++ DSR I+ G +F+ + G + DGH FI Sbjct: 1 MKLS--LYEVAK--VVEAQNIISEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A GA A S P L+V + K A K +++AV Sbjct: 56 DKAFESGAVATFSEKEI----------SGHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S ++ + + + G L P Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKIVLEMGQDHL 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + + L G H+++ +++ A+ ++ Sbjct: 165 GDIHLLSEIAQPHIAVVTLIG------------EAHLEFFGSREKI--AQGKMQITDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G+ + +K ++ + + Sbjct: 211 SHGILIAPGDPIIDPYLPENQMVI-------RFGENQEIFVKSIEESKNSLSFTTNVLNQ 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G++ NA++AA + + + ++E LE + + R E+ ++ + Sbjct: 264 ALTLPLSGKYNATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNRTEWKKASNGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGD 393 Y ++ +IL+ I G+ I + + Sbjct: 324 VYNANPTAMRLILETFTQIAPNQDGQKIALLADMKE 359 >gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 3/254 (1%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H Y AK LF + K + + E+ + + G +G ++ Sbjct: 66 HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWL 125 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKAAS 185 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+G Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244 Query: 398 KRPIMGKIALDLAD 411 KRP+MGKIA LAD Sbjct: 245 KRPLMGKIAETLAD 258 >gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 455 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 72/426 (16%), Positives = 139/426 (32%), Gaps = 44/426 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + +N++ DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNI-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G L P Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + + L G + + A+ ++ Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ + G + L K +T + Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDYQELNVTDIREEKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++E LE + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + ++ L+ D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383 Query: 414 IVTDDN 419 + D+ Sbjct: 384 VFYGDD 389 >gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccae ATCC 33574] Length = 439 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 122/383 (31%), Gaps = 25/383 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR G IF A+ G DG+ F A+ +G V+ ++ N + Sbjct: 16 ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN A + + V G +G + + + I G + Sbjct: 70 ILVDNVLTTFKELAREHRRRFD---IPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGN 126 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + S + V + AS G + +D ++ G TN+ Sbjct: 127 FNNDVGVPK----------TLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + + E+ + + Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHDGLLFLNESNPDLMEMAAQRNFGRIISYGRDE 236 Query: 273 QGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + ++ L G + + N L A + + G+ Sbjct: 237 GGNVEGEVIDCSPFLNFRWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGV 296 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A + L R + T I Y +S+ + N + + + R + + Sbjct: 297 SPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKMAI 355 Query: 388 FGCGGDRDQGKRPIMGKIALDLA 410 G + K LA Sbjct: 356 LGDMLELGAVSDEEHQKTVDALA 378 >gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus DSM 14838] Length = 432 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 70/439 (15%), Positives = 157/439 (35%), Gaps = 34/439 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G+ +G+ F +A+ G+ +++ A + ++ Sbjct: 14 TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEA------EYALAGDS 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V+N L A+ + I+ +TGT+GK++ + + + + G Sbjct: 68 HYILVNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + + + AS G + +D + G T Sbjct: 128 NNH----------IGVPLTLLRLRAE---HDLGIIEMGASHPGDIKELVDITEPEYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K L++ L +++ I D M R N + Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDYLRERKNSTIFIHHDNLYLRNMARGLNLISYGSAD 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + +G+ + L GE+ NAL A + + S Sbjct: 235 ELYVNGHVTGN--SPYLIFEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEVASE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L + R + + I Y S++ + N R + +++ G Sbjct: 293 KIDAALREYTPQNNRSQL-KQTADNTLIIDAYNANPTSMQASISNFRNMEVENKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 + + KIA LA+ +D + + F + A+ Sbjct: 352 MRELGKDGPKEHQKIADFLAE--------CGFKDVMLVGEQFAAAKHNFPTYPD-APAVI 402 Query: 451 TAIEMLNK-QDVLVVAGKG 468 ++ +++ KG Sbjct: 403 EVLQKSKPHGKTILI--KG 419 >gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes ATCC 10782] Length = 455 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 68/426 (15%), Positives = 134/426 (31%), Gaps = 44/426 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + + Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPNDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ + G L K +T + Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++E LE + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + ++ L+ D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383 Query: 414 IVTDDN 419 + D+ Sbjct: 384 VFYGDD 389 >gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sicca ATCC 29256] Length = 455 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 76/428 (17%), Positives = 140/428 (32%), Gaps = 40/428 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q P + ++ + +DSR I+AG +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116 + R + L VD+T L A G Sbjct: 55 ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRGNVNPF 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TG+ GK++V + + + + ++ P+ L Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRHRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + G K A N R H+ + Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L ++ A+I +D ++ + + G + + G +H + + + + Sbjct: 213 GLGEDGLALIPCEDEHAAMF--QTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCG 270 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+PG V+NA AA L +A G+ V E L+ + GR Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAAALALAAGLILDDVAEGLKGFSNIKGRLNVKSGIKGAT 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411 I Y +S++ + + + + R I V G G+ + + M A + Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389 Query: 412 IAIVTDDN 419 A DN Sbjct: 390 AAYFVGDN 397 >gi|163814275|ref|ZP_02205664.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759] gi|158449910|gb|EDP26905.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759] Length = 255 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + +DYAH S + + IR+I R+ + G GD+ G+R G++ AD Sbjct: 104 NGRHVIIDYAHNHMSYSSLFRTIRSIYPTDRLTALVGAMGDKAFGRRREAGQMTNVYADR 163 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKGHET 471 ++T+ + SE P KI +EI + + R E AIR ++ + DV+V+ GKG E Sbjct: 164 VVITEQDSGSEHPAKIGSEIARYVHKLCKIVPRREAAIRYILDKSDPGDVIVLTGKGAEK 223 Query: 472 VHIVT-NGEKKMSVDCDIIREILG 494 V N + + D +I++ L Sbjct: 224 TLRVGRNSVRPYAGDLEIVKAWLR 247 >gi|306836495|ref|ZP_07469467.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens ATCC 49726] gi|304567629|gb|EFM43222.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens ATCC 49726] Length = 119 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451 KRPIMG+ A AD+ +VTDDNPR+EDP IRA +I G E+G+R AI Sbjct: 1 KRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARQAAPDADIREQGSRARAIDE 60 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 ++ D ++V GKGHE +V D + + + Sbjct: 61 VVDWAQPGDAIIVVGKGHEVGQLVGE-RTLHFDDREEMARAIE 102 >gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2, 6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax paradoxus EPS] gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax paradoxus EPS] Length = 479 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 85/440 (19%), Positives = 152/440 (34%), Gaps = 36/440 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + I V +D+R + G +FVA+ G + D + F+ QA +GA A + Sbjct: 24 VGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQAKEKGAIAAIAHHGLEAAGL 83 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + L V ++ L + + ++AVTG++GK++V + I Sbjct: 84 AG--------LEVPDSLVALGALGAGWRAQFELPLIAVTGSNGKTTVTQMIAAILVAFRA 135 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + P+ L + + + + G + RL I Sbjct: 136 DRALATAGNFNNEIGV--------PLTLL---RLRARHQHAVLELGMNHPG-EIARLSAI 183 Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + N R+H ++ T +A +F LP + A+ D ++ AH Sbjct: 184 SRPTIALVNNAQREHQEFMATVEAVAIENAAVFAV-LPDDGTAVFPYGDTFTSLWTDMAH 242 Query: 262 NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G R +G I L+ V + +FD + G NAL A Sbjct: 243 DGGSRRCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNALAAT 302 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 +A G+ + E L V GR E V +N + D Y +S+ + Sbjct: 303 ACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAAIDV 362 Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + ++V+ G G+R +G A A+ T +E I A Sbjct: 363 LAGLPGPHLLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYT---LGTETAHTIAA--F 417 Query: 434 HGIPGFIEKGNRIEAIRTAI 453 + EA+ A+ Sbjct: 418 QDADNGRHFND-YEALHAAV 436 >gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] Length = 479 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 79/468 (16%), Positives = 153/468 (32%), Gaps = 65/468 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATI 86 V D+R + G +F+A+ G + DGH F +A+ GA ++ + Sbjct: 4 SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQ 63 Query: 87 RSNTPILVVDNT---------------RKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 ++ + + +T R + A+ ++ VTG+SGK+S Sbjct: 64 ANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAG-----GLTVIGVTGSSGKTSTKD 118 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q+ + G + G ++ AL +S + + A Sbjct: 119 VIAQLIEPMGPTVAPPGSFNSELGHPW-------------TALRADASTKFLVLEMSARG 165 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + G+ N+G H+ +++ AK L E LP++ A++ DD Sbjct: 166 VGHIAAAAETTPPRIGAVLNVGSAHVGEFGSREGIAKAKGELVEA-LPEDGLAVLNLDDP 224 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + R + + + + + PL GE Sbjct: 225 LVAAMASRTKAR-IVGVGESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLHGEHH 283 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL AA + +G + + + L L R E + Y S+ Sbjct: 284 VGNALSAAAIARELGATTEEIAQRLSSLQRRSERRMEVTTRADGVTILNDSYNANPESVR 343 Query: 371 MILKNIRTITS--GRIIVVFGCG---GDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE 423 LK + +++ R V G G+ +G++ + L + +V + Sbjct: 344 AGLKALASMSRSGRRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQE----- 398 Query: 424 DPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 A + G + + A+ + L DV++V Sbjct: 399 -----AAAMHQGAFQEGSWGEESVLVPDVEAAVAVLHDQLRPGDVVLV 441 >gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Sinorhizobium meliloti 1021] gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium meliloti 1021] gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] Length = 477 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 158/466 (33%), Gaps = 34/466 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA Sbjct: 6 TSSDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAA 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VVS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 66 LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + G + + P+ LA + + Sbjct: 122 KEMLRHVLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDFGVFEIGM 168 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + G ++ T++ H+ + AK +FE ++ I Sbjct: 169 NHAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVI--NR 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306 D+ ++++RA A + ++ + ++ G+ + Sbjct: 227 DSAQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGA 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YA 363 PG NAL A G D+ V + GR G +D Y Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYN 346 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 S+ + +R GR I V G + + + +A + + I D Sbjct: 347 ANPASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGI-ADVWL 405 Query: 421 RSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVV 464 + +R + + G+ A+ ++ DV++V Sbjct: 406 AGPEMAHLRDALPPEVSVVHRDVVGDLT---AYALGAVSAGDVVMV 448 >gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] Length = 462 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 157/448 (35%), Gaps = 43/448 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R ++ G +FV +VG + DGH F+PQA+A GA ++ + + Sbjct: 26 TGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVANGAAGVLAAQPV-----------DA 73 Query: 91 PILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V++T K L + AVTG+ GK+SV V+ + +G + + Sbjct: 74 PAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSVTRAVEAGLRLAGKAHASVKS 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 P+ LA+ A + + A + Sbjct: 134 ----------YNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSFV---QPHAVAI 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T +G HI+ +A L A++ AD+ + + A G V S Sbjct: 181 TTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAEKVGATVWS 240 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G QG L + V++ + G+ F G N+L + A+ + Sbjct: 241 FGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLLMLEALDVP 300 Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS-GRI 384 L L + GR E G VD Y S++ LK + GR Sbjct: 301 RETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLGARKVAGRR 360 Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 IVV G+ + + IA D+ + + +S E + G Sbjct: 361 IVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSL-WEALPPTRRGGYAVVT 419 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 EK A AI DV++V KG Sbjct: 420 EKLTAELA--GAI---RPGDVVMV--KG 440 >gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-2A] Length = 437 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 58/376 (15%), Positives = 136/376 (36%), Gaps = 30/376 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +S+D+R ++ +F+A+ G+ +G+L+ +A++ GA +++V Sbjct: 19 SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDD-------PKLKNLGA 71 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV++T K L A+ + I+ +TG++GK++ V+++ + G Sbjct: 72 NSIVVEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNL 131 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + + A+ ++ G T Sbjct: 132 NNH----------IGVPLTLLELTKE---HQIAIIEMGANHLDEIKNLCCISLPNWGYIT 178 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ K L+ L+ ++ +I DD +K+ N Sbjct: 179 NFGKAHLEGFGGVDGVIKGKSELYNHLIEQQQKILINGDDPLQ---IKQTKNYPVSSFGH 235 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + F + + D F L G + + N A + + Sbjct: 236 GKENTFQISTNEK------DDELQLTYNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTK 289 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + ++K R + + + + Y S+E +K + I + + +++ G Sbjct: 290 SIQKAIQKYQATNNRSQKIKIKNTSIILDA-YNANPTSMEHAIKAFKKIATQKSVLIMGD 348 Query: 391 GGDRDQGKRPIMGKIA 406 + +I Sbjct: 349 MKELGVESEKEHQQIV 364 >gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 427 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 64/370 (17%), Positives = 128/370 (34%), Gaps = 32/370 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +DSR I+ IF ++ G+ +G+ F AI GA V+ ++ Sbjct: 14 SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN------ 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + VDN+ L A+ K I+ +TG++GK++ + + + + G Sbjct: 68 -YIQVDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNL 126 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L+ + + +E S + + G T Sbjct: 127 NNH----IGVPLSLLEISE-NTEFAVIEMGANHIGEIELLSKIAEPN--------YGYIT 173 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ +++ K L+E L +DD K ++ Sbjct: 174 NFGKAHLEGFGSEEGVIKGKSELYEFLTESSGFIFYNSDDEKQKHILS---------NYN 224 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + I VE + F L G + + N + A + I +G+ Sbjct: 225 KKFGFGKEAGDLNYLVKAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGIFLGVPVE 284 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 V + R + + NS + Y +S+ + +K + +++ G Sbjct: 285 KVKNGISDYISSNNRSQILKINSNNVILDA-YNANPSSMLLAIKAFQNAELENKVLILGD 343 Query: 391 G--GDRDQGK 398 RD+ K Sbjct: 344 MFELGRDENK 353 >gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] Length = 464 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 138/410 (33%), Gaps = 56/410 (13%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL ++ K F L +E I V DSR + AG +F AI +G+ + Sbjct: 39 MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 83 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + +A+ +GA ++ + ++ V +T F+ A+ ++A Sbjct: 84 VSEALEKGASIVIADH---------YFEPHERVISVKDTVLFMQELAAEYRSFLKTKLIA 134 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ V I ++ + +G +N + P I + + Sbjct: 135 ITGSNGKTTTKDIVYAILSKTFPTKKTLGN--------YNNHIGLPFTILNLEEGDEFA- 185 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + SS G + G TN+G H+++ +T++ F AK L L Sbjct: 186 ----VLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQ 241 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 V +G + + + + Sbjct: 242 GHFITSGD----------DIFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYE 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 NA + L IG+ + +L ++ + P RFE Sbjct: 292 ICLEGKHNVM----NAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTEYIND 347 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y + S+ L ++ + + R V G G+R+ + + A Sbjct: 348 A-YNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKA 396 >gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] Length = 430 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 127/372 (34%), Gaps = 35/372 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA------YSLQDFS 83 N V++DSR + +F+ + G ++DGH +I QA+ QGA+ ++ +A + Sbjct: 26 FNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHILV 85 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 R + V+ T K L A+ + P+ + VTG++GK++ + I + Sbjct: 86 LCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASIFAQKYR 145 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G ++ T P+ + V + + G + Sbjct: 146 TVKNEGNLNSE----------TGLPLSVFTITKE---HEVGIFELGMNRKGEIAELAAVL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K TN+G HI ++ A K +F D S + Sbjct: 193 KPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFSCF------------DETSVGFVPAQDK 240 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + V + + A + + K PLPG+ V+NA A + Sbjct: 241 YAEFLQDVPHGKIVTYSADPDAYTLEGLSGAEIRYKGETIHLPLPGKHNVHNAFAAIAVA 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 I + +E++ + GR + + Y +S+ L I Sbjct: 301 EYCKIPLQSIKAGIEQMQALFGRSQIIRGPVTYLLDC--YNANPDSMNAGLALCANIRVS 358 Query: 382 GRIIVVFGCGGD 393 G+ I V + Sbjct: 359 GKKIYVLASMKE 370 >gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 329 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 107/299 (35%), Gaps = 14/299 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++D+R +QAG +FVA+ G K DG F A+ GA A+++ S R+ Sbjct: 28 FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTP 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V +T A K ++AVTG++GK++ G Sbjct: 88 GAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRT--- 144 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 A + P+ L V + G G Sbjct: 145 -------AANYNNEIGLPLTLLGMTGE---DTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H++ + + AK L E + I+ ADDA + +A + + Sbjct: 195 TNVGETHMELLGSIENIARAKSELVEA-IAPGGIVILNADDARVAAMRAQAADGVRILTY 253 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 I + + + N+ + ++ G+ D+ PL G VYN A G A Sbjct: 254 GIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRGACGGLCARPFP 312 >gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA] gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA] Length = 432 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ + QA+ +G + VV D I Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ K L A+ K I+ +TGT+GK++ + + Q+ + G + Sbjct: 70 LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + + A+ G + ++ G TN+ Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L+E L I D ++ + + + Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K+ A EG+ F+ L G + + NAL A + + S + Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E LE R + + I Y S+ L+N R + +V+ G Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353 Query: 393 DRDQGKRPIMGKIA 406 + + KIA Sbjct: 354 ELGETSHEEHQKIA 367 >gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] Length = 449 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 78/446 (17%), Positives = 155/446 (34%), Gaps = 41/446 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH + AI +GA A++VS + D Sbjct: 23 NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 IL+VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -ILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + + G + + +K T Sbjct: 135 NNYLGL-------------LINLASMADDMEYAILELGMNHKGEIRELVQILKPNIAVIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + AK +FE + I + YSK + + RV + Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADTNCYSKILSILKNLYIDRVYNF 241 Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G L + + ++ + K + P N V + +G D Sbjct: 242 GILHNTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGKDI 301 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + HL ++ GR + + + Y + S++ L+ ++ + + + G Sbjct: 302 EIAANHLANIYPTKGRGDIINIQNARVICDY-YNASPKSMQAALEYLKQVMAENKTAIIG 360 Query: 390 CGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEK 442 + + ++ I + N + P KI E Sbjct: 361 DMLELGKNSKLLHEELVPYILDVGCSKIYLVGVNTKYIYDLLPSKIAK---KYFKNVDEL 417 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 I ++ D++++ KG Sbjct: 418 ------ITHITDLFKGNDLILI--KG 435 >gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 455 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 84/472 (17%), Positives = 158/472 (33%), Gaps = 47/472 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L + + + V +DSR I +FVA+VG DG+ ++ Sbjct: 5 MRLSELQEPLQGRITGE---------DVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 GA A +VS + S P L V++T+ L + + ++A+ Sbjct: 56 EAVAENGAVAALVSRSSSSA---------LPQLCVEDTQTALGRLGAFNRDLYTGPLVAI 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + + + + G + G + P+ L Sbjct: 107 TGSSGKTTAKNLINGVLSQRGATLATNGNFN----------NEVGVPLTLL---RLSQEH 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + A+ G + + N H++ + + K +F+ L Sbjct: 154 EFAVVEMGAARQGDISWLCELGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDA-LAA 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ AD ++++ RA A S+ + + Sbjct: 213 GDVAVVNADQPWAEDWKARAGTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKGCV 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D LPGE + NAL A + +A + + LE + V GR S I Sbjct: 273 DVSLRLPGEHNIANALAAIAVGLACELALDEIAAGLESVAPVAGRLSVQVAASGALVIDD 332 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGKIA--LDLADIAIVT 416 Y S + + +V+ G+ +G A LA V Sbjct: 333 CYNANPGSALAAIDTLAASEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVG 392 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K+ + + E + +A+ A ++ D +++ KG Sbjct: 393 AE-------LKVAVDAFGERGRWFEHCD--QAVVAASASFSQGDTVLI--KG 433 >gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] Length = 425 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 76/438 (17%), Positives = 146/438 (33%), Gaps = 46/438 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I IF A+ G +G+ F +A+++GA VV Sbjct: 16 VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVD--------EGDFPDEPRC 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + L A + I+ +TG++GK++ + + + + G + Sbjct: 68 IRVPDALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P + V + A+ G + + + G TN Sbjct: 128 HIGVPLTLLRIAPE-------------TELAIVEMGANHQGEIRLLSEMAQPDFGYITNF 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L+E L+ + + + ADD E + N Sbjct: 175 GKAHLEGFGGVEGVIRGKSELYENLMERGATIFMNADDPVQFEKLAGYANCVGFSTRNPA 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + +L + ++ D L G + N V+A + G+ + + Sbjct: 235 YMQIKNLTD--------GPAVRLQVDDVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAI 286 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391 E LE R + + + + Y S+ L+N+ + S R I + G Sbjct: 287 AEALESYIPANNRSQLIERGNL-RILLDAYNANPTSMAAALENLAEMDSPRKIAILGDMF 345 Query: 392 --GDRDQGKRPIMGKIA-LDLADIAIVTDDN--------PRSEDPEKIRAEIIH----GI 436 G + +G+ A + + + R D + E+ G Sbjct: 346 ELGAEAAAEHEAVGRFALSKNPEKLYLVGQHFYDTALPAARFPDFAALSRELKANPLTGP 405 Query: 437 PGFIEKGNRIEAIRTAIE 454 + KG+R A+ +E Sbjct: 406 ATVLIKGSRGMALERVLE 423 >gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA] gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 3_1_40A] Length = 432 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 135/374 (36%), Gaps = 22/374 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ + QA+ +G + VV D I Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ K L A+ K I+ +TGT+GK++ + + Q+ + G + Sbjct: 70 LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + + A+ G + ++ G TN+ Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L+E L I D ++ + + + Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + K+ A EG+ F+ L G + + NAL A + + S + Sbjct: 235 REGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E LE R + + I Y S+ L+N R + +V+ G Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353 Query: 393 DRDQGKRPIMGKIA 406 + + KIA Sbjct: 354 ELGETSHEEHQKIA 367 >gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] Length = 464 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + LI + + + I+ VS+D+R + G ++VA+ G + DGH F A A+G Sbjct: 2 KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++V + P ++V ++ L+ A+ + + A+TG++GK+ Sbjct: 62 ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKT 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SV S + I Q+ + + + ++N + P + A + + + Sbjct: 113 SVKSLLLSILQQVAQHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 A G + D + N+ H++ + LP + A+I Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DDAY + + R + Y I + + A Q T+ + + Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVL 283 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG V NAL AA L +A G+D AL+ L + VPGR + G + D + Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGR-QIAHQLRNGAVLVDDSYN 342 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + + +V G + + + Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383 >gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] Length = 456 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 78/444 (17%), Positives = 152/444 (34%), Gaps = 40/444 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +VS+D+R I+ G +F+A+ G + DG+ ++ A +GA + Sbjct: 27 TDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIALAERPC----------PGW 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+++VD+ L A+ + ++ VTG+ GK+S + + ++ + G Sbjct: 77 PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEGNL 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P + + S+ G G T Sbjct: 137 --------NNLIGMPMSV-----FGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVIT 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ +Q+ AK+ + + I+ DD V + A + Sbjct: 184 NIGVSHIEMLGSQENILKAKL-EILDGMRPGGKLILNGDDPLLAGV--QTDKAEVITYGI 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G ++V + + G + G+ VYNAL A + +G++ Sbjct: 241 ENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGMEPD 300 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389 + + R + Y + +S+ +RT+ GR + V Sbjct: 301 TIAAGFLQYAPTGYRQKIERVGGVTFVEDC-YNASPDSMRSAFDVLRTVQKTGRRLAVLA 359 Query: 390 CG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 GD +G+ A + D+ +N R G + Sbjct: 360 DMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGY----TQAGGTQGAHFTD- 414 Query: 446 IEAIRTAI-EMLNKQDVLVVAGKG 468 A+ A+ +ML + D ++ KG Sbjct: 415 KAALTDALCQMLREGDAVLF--KG 436 >gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12] Length = 426 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 138/410 (33%), Gaps = 56/410 (13%) Query: 1 MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL ++ K F L +E I V DSR + AG +F AI +G+ + Sbjct: 1 MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 45 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + +A+ +GA ++ + ++ V +T F+ A+ ++A Sbjct: 46 VSEALEKGASIVIADH---------YFEPHERVISVKDTVLFMQELAAEYRSFLKTKLIA 96 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ V I ++ + +G +N + P I + + Sbjct: 97 ITGSNGKTTTKDIVYAILSKTFPTKKTLGN--------YNNHIGLPFTILNLEEGDEFA- 147 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + SS G + G TN+G H+++ +T++ F AK L L Sbjct: 148 ----VLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQ 203 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 V +G + + + + Sbjct: 204 GHFITSGD----------DIFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYE 253 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 NA + L IG+ + +L ++ + P RFE Sbjct: 254 ICLEGKHNVM----NAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTEYIND 309 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 Y + S+ L ++ + + R V G G+R+ + + A Sbjct: 310 A-YNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKA 358 >gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG] gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF] gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] Length = 473 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 157/479 (32%), Gaps = 53/479 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + + + V +DSR ++ G +FVA G + DGH + Sbjct: 1 MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A AT P +VVD+ L A + + ++A+TG Sbjct: 60 ----------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ R G + + G + T Sbjct: 110 SAGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEE-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G ++ G N+G HI ++ A E LP+ Sbjct: 157 LVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEA-KGEMVEALPESG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R + + + + + Sbjct: 216 LAVLNADDPLVRGMAPRTRARVLLFGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + +G+ + + L + R E + Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLSEARSLSRWRMEVTERPDGVTIVNDA 334 Query: 362 YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410 Y + +S+ L+ + + GR V G GD +G++A+ L + Sbjct: 335 YNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVS 394 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + V ++ +R + G + + AI L DV++V Sbjct: 395 KLVAV-----GGQEAAWLR--MGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446 >gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Burkholderia rhizoxinica HKI 454] gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) [Burkholderia rhizoxinica HKI 454] Length = 476 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 152/456 (33%), Gaps = 36/456 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + E + + + ++VS+DSR +FVA+ G + D H F+P Sbjct: 1 MTMLTLREAAALIDGATVLGDDTVAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPDLA 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +G A++VS + P + V +TR L A+ + ++AVTG++ Sbjct: 61 RRGVAAVLVSR--------SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTGSN 112 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++V + I + + ++ +++ P+ L + + Sbjct: 113 GKTTVKEMIASIFAAAVGHAQRLSTQGNLNNVIGM-------PLTLLQ---LAPQHRLAV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V + + G Q N R+H ++ T +A LP + A Sbjct: 163 VELGMNRPGETQQLARIAGPTIALVNNAQREHQEFMATVEAVALEHA-SVIHALPPDGTA 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + ADD Y+ A + ++ G + + I + Sbjct: 222 VFPADDPYAGIWRVAATDNRIVDFALRRPGANSDAAVQGTTTDTGALRIETRAGALEVSL 281 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVD 361 PGE NAL A +A G+ + LE V GR + G + D Sbjct: 282 RAPGEHNARNALAATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVIDD 341 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD 417 Y +S+ + + + R++V+ G GD +G A D Sbjct: 342 TYNANPDSMRAAIDVLTMRQAPRVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYALG 401 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453 D R + + EA+ A+ Sbjct: 402 DASR---------DACTAFGPHAHHFDSAEALICAL 428 >gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides vulgatus ATCC 8482] gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides vulgatus PC510] Length = 432 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ + QA+ +G + VV D I Sbjct: 16 VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ K L A+ K I+ +TGT+GK++ + + Q+ + G + Sbjct: 70 LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TP + + + A+ G + ++ G TN+ Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L+E L I D ++ + + + Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K+ A EG+ F+ L G + + NAL A + + S + Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E LE R + + I Y S+ L+N R + +V+ G Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353 Query: 393 DRDQGKRPIMGKIA 406 + + KIA Sbjct: 354 ELGETSHEEHQKIA 367 >gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella veroralis F0319] Length = 440 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 60/388 (15%), Positives = 127/388 (32%), Gaps = 35/388 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IF+A+ G DG+ F A+ +G +V ++ I Sbjct: 16 VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEK------EYADPTDKRI 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151 ++V++ A + ++ +TGT+GK++ + + + Sbjct: 70 ILVEDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNN 129 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + + I + + AS G + + ++ G TN Sbjct: 130 DVGVPRTLLGIGSDDEI--------------AVIEMGASHPGDIKKLVTYVEPTCGLITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +GR H+ + + K L++ L ++ + +A E+ + Sbjct: 176 VGRAHLQGFGSFEGVKRTKGELYDYLKAHDALLFLNESNADLTEMAAQREFDRIITYGQD 235 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNALVAAGLCIAI 325 CA K + S K ++ L G + + N L A + + Sbjct: 236 DTADVQGKVISCAPFLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHF 295 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + LE R + + I Y +S+ ++N R + + Sbjct: 296 GVTPQQINHALESYIPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFRLMEVEHKM 354 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413 + G R + A + + Sbjct: 355 AILG-------DMRELGAASAEEHQKVV 375 >gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] Length = 461 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 76/488 (15%), Positives = 157/488 (32%), Gaps = 65/488 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+++ E + + ++KI VS DSR I G FV + G DGH FI Sbjct: 1 MTLREI-----SEAVGG-KLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFI 54 Query: 61 P-----------QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109 A ++ + T ++ V++ + L ++ Sbjct: 55 AAAAEKGAAGCFAAFSK----------------NVTHPEGMTVISVEDPEQALQDLSAFY 98 Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 K ++AVTG+ GK++ + + G + + LT Sbjct: 99 RRKFQLPVVAVTGSVGKTTTKDMIAAALSPELKTLKTEGNLN--NHLGVPLMLTRLDS-- 154 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + + + S +G TN+G H++ +++ A Sbjct: 155 ---------TYEAAVLEMGMSGYGEIDLLAKLALPTVAVITNIGESHLEMLGSREGIARA 205 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 L + A++ AD+ +K + K+ Sbjct: 206 -KCELLGHLAADGVAVVNADEPLLVPHIK-GLGCRVITFGFDEHATVRCTDIINDEAGKR 263 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + PLPG +YN + A + +G+D +++ E ++ + R E V Sbjct: 264 AIIEQEGFAPLEVVPPLPGRHNIYNLMAALAVGRLLGVDDSVLTEGFSRVRLSGMRLETV 323 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKI 405 T + I Y + ++ + + V G GD ++ G+ Sbjct: 324 TTPAGIQVINDAYNASPTAVSAAFDVLAELAKDAARFAVLGDMLELGDWEEEGHRQTGRQ 383 Query: 406 ALDL--ADIAIVTDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQD 460 + + ++ E + I + G P + +A + ++ D Sbjct: 384 VARHNLSGLLVL------GERAQLIADGAVAAGYPPQRVYRCESHAQAAQVIAKIARAGD 437 Query: 461 VLVVAGKG 468 +++ KG Sbjct: 438 WVLL--KG 443 >gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] Length = 451 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 92/420 (21%), Positives = 156/420 (37%), Gaps = 39/420 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ EL L + + +I VS+D+R + AG +FVA+ G + D H F Sbjct: 2 MTLR------LAELAQVLDARLIGD-DGEITVVSTDTRTLGAGALFVALRGERFDAHDFC 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ GA A++V L P LVV ++ K L + + +LA+ Sbjct: 55 EQAVQAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGKLVRERINPKVLAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++V I + G G + P+ L Sbjct: 106 TGSCGKTTVKEMATAILRNEGEVLATAGNFN----------NEVGVPLTLL---RLEPQH 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G K A N+ H++ + + F+A E L + Sbjct: 153 KFAVMELGANHPGEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHA-KSEIFEGLSE 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ AD+ + + +R G F V + + + Sbjct: 212 GGTAIVNADNEFWPKWRERGIQCA--FSIEGQSQPFHARNLVLNERGCAEFVMVTPQGEL 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG V NAL AA C+A+G V LE++ V GRF G + Sbjct: 270 SLTLAIPGRHNVANALAAAAGCLALGASLGSVKAGLEQMAPVKGRFCVQRWG--GLTLVD 327 Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 D Y + S+ + + + + ++VFG G+ + +G+ A + A++T Sbjct: 328 DTYNASVESVLAGIDALTAMGGFK-VLVFGDMRELGEESAEQHARVGRHARERGLDAVLT 386 >gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Mucilaginibacter paludis DSM 18603] Length = 433 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 23/359 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I G IF A+ G+K D + F QA+ GA V+ + + Sbjct: 16 ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNG--------DYNVSQKC 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ L A + + +TG++GK++ ++ + + + G + Sbjct: 68 ILVDDVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 T I ++ + +E + G TN+ Sbjct: 128 HIGVPL-----TILAIDQTVEMAVIEMGANHQKEIELLCSI--------AQPTHGLITNV 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L++ L + + D +++ + Sbjct: 175 GKAHLEGFGGAEGVKKGKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDI 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + K + I E L G + + N L A + + + Sbjct: 235 GNNISGELLENSPYLKLRWKIKNEA-YHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEI 293 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 L R + V T S Y +S+ + ++NI + +GR +V+ G Sbjct: 294 NTGLSGYQPHNNRSQIVKTASNTLICDY-YNANPSSMFVAIENIGKLPAGRKVVILGDM 351 >gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] Length = 130 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 P L V +TR L A + ++AVTG++GK++V Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118 >gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. m3-13] Length = 453 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 90/477 (18%), Positives = 167/477 (35%), Gaps = 52/477 (10%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ + Q ++ + VS D+R +G +++ I+G +GH F+ A Sbjct: 1 MIKRTLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDA 60 Query: 64 I-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 I +GA A ++ ++VVD+T + L AS + ++ +TG Sbjct: 61 IEKKGAVASFWQKDQPEP------PTDLNLIVVDDTIEALQHLASSYRNQIGMKVVGITG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ V + + + G +N + P I LS V Sbjct: 115 SNGKTTTKDMVTSVLETTFRVHKTAGN--------YNNHIGLPLTI-----LSMKEDTEV 161 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G + K A TN+G H+ +++ AK+ + L Sbjct: 162 AVLEMGMSGRGEIELLSSIAKPDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGK 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I + R + K + I ++ ++ Sbjct: 222 LIING----DEPLLTDRVGGKTNVIPFGLKANNDYQAKDIMLKGIGTHFII----EETEY 273 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+ G V NAL A + G+ + LE+L + R E V T+ I Y Sbjct: 274 FIPVLGAHNVTNALAAIIVGELFGVSEENRKKGLEQLVITGMRNEVVETSGGWTVINDAY 333 Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTD 417 + S+ L + ++ G+ I V G GD ++ +G+ + D Sbjct: 334 NASPTSMRAALDLLGSLDGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVF--- 390 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468 + EI G +E + E R +L DV++V KG Sbjct: 391 ------TFGALGMEIAKGAQEVMEPSHVKPFMNKQELTRELRPLLENGDVVMV--KG 439 >gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] Length = 450 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSEL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] Length = 450 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSEL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola granulosus HTCC2516] Length = 480 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 149/461 (32%), Gaps = 51/461 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R + G +FVA+ + DGH F+ QA+ +GA A +V + ++ Sbjct: 24 DGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEKGAAAALV------THRPEGVAADA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+LVV + L + + A+TG+ GK+S ++ +R G + Sbjct: 77 PLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTSSKEMLRAALERQGRTHAAEASY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + P+ LA+ + + G+ H A L + + + + Sbjct: 137 NNHWGV----------PLTLARMPADTEYAIVEIGMNHPGEIAPLARLARPHVAMVTI-- 184 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + H++ + + K +FE L P + I Sbjct: 185 -----VAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEAAGAEI 239 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V G L + + + + G NAL A+G Sbjct: 240 VSFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLATAAALG 299 Query: 327 IDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---- 377 D + L L PGR + G +D A +N + Sbjct: 300 ADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAALEVLAAA 359 Query: 378 -------TITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKI 428 I GR I + G + + +A + +A + +V P + + Sbjct: 360 RPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLMRELHRA 419 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468 + G + A +++ DV++V G KG Sbjct: 420 LPDGRRG-RWVENAEDLA---AKAARLVDPGDVVLVKGSKG 456 >gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805] Length = 471 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 145/452 (32%), Gaps = 44/452 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G F+ + G + DGH F+ A+ +GA+A V+ + + Sbjct: 32 VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAH-----AVPDGLLH 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V++T A+ + ++AVTG++GK++ ++ P Sbjct: 87 WRVEDTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALA----------PLGD 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + +N P+ L A ++ V A + RL + Sbjct: 137 VQASDSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAG----EIERLSRCAEPQIAVITN 192 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +A + L +I A DA ++ + R +++ Sbjct: 193 IGTAHIGRLGSRAAIASAKCEITAALSPLGIVVIPAGDALLEDALSRCWTGRILRVALDG 252 Query: 273 QGKFI----------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 L + + S+ F PL G N ++A + Sbjct: 253 DEPENGPEVSGLTSGDLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHNARNFMLALAVA 312 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + + ++ R +G + Y + ++ L+ + G Sbjct: 313 QELKVSLQTIQALDVQVPGGRNRRLSLGGIALLDET---YNASPEAVFAALQ-LLAHQPG 368 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG-IP 437 R V G G R + + A+DL D +V E E+ G + Sbjct: 369 RRYAVLGTMLELGSRSVDLHRRVAQKAVDLQLDGLVVVAGGEEGE-----AMEVAAGSLS 423 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 F +A E L D +++ A +G Sbjct: 424 RFERVETPEQAALPLAEWLKPGDTVLLKASRG 455 >gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] Length = 466 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ I DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 457 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 139/417 (33%), Gaps = 28/417 (6%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + E+ + + S + IN VS D+R I+ +++ I+G K +GH FI +A Sbjct: 1 MIRRKLNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + GA A + + + + P ++V++T + A + I+ +TG+ Sbjct: 61 MGNGATATLWDKNQPIPNI------DFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGS 114 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S + I Q + +G + P+ L + + + Sbjct: 115 NGKTSTKDILFNILQTVYKTHKTLGNLNNH----------LGVPLTLLEM---AENTEIA 161 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + TN HI+ + + AK+ + E L P Sbjct: 162 VIEMGMSGLGEIELLSKIASSDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLF 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 V K + + + + Sbjct: 222 IYFGDSPPLRVGVEKLDLKQKKVTFGINRDNDYTVKLISSENEGIYFELVGSDSPRLF-- 279 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G Q+YNA A + I + E + K+ R E + N + Y Sbjct: 280 LSMLGNHQIYNAAAAIAVAQYFNITLEKIQEGMLKIEATGMRNELIKCNGFD-ILNDSYK 338 Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 SL +L + + + IVV G G+ + +G+ + T Sbjct: 339 SNPISLRSVLDTMYSFKKYKQKIVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFT 395 >gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] Length = 474 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 92/481 (19%), Positives = 169/481 (35%), Gaps = 56/481 (11%) Query: 6 LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + ++ V DSR + +G +FVA G K DGH + Sbjct: 1 MIALSLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDY---- 56 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 A A + P++VV + ++ A + + P+ ++ +TG Sbjct: 57 ------AAAAVQAGAAAVLGTREVPGVPMVVVADALTAMARLARAVVDRLPQLTVIGLTG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + Q+ R G + G + + + Sbjct: 111 SSGKTTTKDLIAQLTARLGETVAPPGSFNNELG---------------HPYTALQAVPST 155 Query: 183 THVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++ +E + G+ R N+G HI +Q+ AK L E LP Sbjct: 156 RYLVLEKGARGIGHVRYLCEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEA-LPA 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + R R + + + T+ Sbjct: 215 DGLAVLNADDPLVDAMAGRTTARVVRYGEAAHADVRAVDVTLDERG-RPAYTLVTPEGSA 273 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G QV+N L AA + +G+ + L +L +V R V + G + Sbjct: 274 TVRLALTGRHQVWNTLAAAAVARELGMPLVEIAVALGELGLVSTRRMDVFERTDGVTVID 333 Query: 361 D-YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 D Y S+ + L+ + + +GR V G G+ + +G++A +L D + Sbjct: 334 DSYNANPASMSVALRALAGVGAGRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLL 393 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 V + A I HG + ++ A++ L DV++V K Sbjct: 394 V---------VGEAAAPIHHGATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLV--K 442 Query: 468 G 468 G Sbjct: 443 G 443 >gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] Length = 487 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 96/509 (18%), Positives = 174/509 (34%), Gaps = 69/509 (13%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLF 59 QD++ L+N + IN ++SR I +FV I+G + D H F Sbjct: 6 QDILNATNGRLLNGS-------ADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNF 58 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 IPQ + GA+A + + L + + V++T L K + Sbjct: 59 IPQVVENGAKAFFIKKGHELPSGIGETAA----IEVEDTEAALLDTGLWYREKFNIPFIG 114 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+ GK++ V + + T P+ L Sbjct: 115 ITGSVGKTTTKEMVAAALSSINIH-----------KTKGNANSTIGLPLTLFG---LEPC 160 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + S + ++ + FTN+G HI +++ K+ + + Sbjct: 161 NEAAIIEMGISEFHEMEKLVEAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFT- 219 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV----------GYQGKFIHLKKVCAIHNKQ 289 +S I ADD +V + + + I + Sbjct: 220 ADSVLFINADDELLMKVAAENSEFRPKNVKHIVTFGINEKADFYASSITISDSGTDFVAN 279 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + E G V NAL A + + +GI A+ + L + +PGR + Sbjct: 280 YKSENGEAVSEQIHLKTLGLHNVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNII 339 Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCG---GDRDQGKRP 400 +N G I D Y + +S++ ++ I + G R VVF G+ + + Sbjct: 340 KSN--GLTIIDDTYNASPDSMKASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHY 397 Query: 401 IMGKIA--------LDLADIAIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEA 448 +G+ + D I +D E+I +E + P +EA Sbjct: 398 KVGEYIKFYNKENTENKIDCLITV-----GKDSEQIILGVKSEDLETNPVTRHFSTNVEA 452 Query: 449 IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476 +L K D +VV G +G +T I+ Sbjct: 453 SDYLKSLLKKGDAIVVKGSRGMQTEEIIN 481 >gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] Length = 469 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 134/389 (34%), Gaps = 34/389 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 Q +I + +DSR +AG F+A+ G + D H FI Q QG + +VS + Sbjct: 28 LNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQGCQVAIVSQPIDAE 87 Query: 81 DFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 LVV +TR L A R ++A+TG+SGK++ + I R Sbjct: 88 ---------VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTTKEMLGSILSR 138 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + G + P + + AS G + Sbjct: 139 IAPTLVTRGNLNNDLGVPVMLLELHPE-------------HQYAVMELGASHQGEIDYTS 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + ++ + N+G H+ + AK ++ + P + + ADD Sbjct: 186 NLVQPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIRQAV 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G I ++ ++ P GE V NA AA Sbjct: 246 QTEQVLSFGAGGE----IFATEIELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAA 301 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIR 377 +AIGI ++ LE+ GR F +G + +D Y S+ + + Sbjct: 302 AFALAIGISLDDIVLGLEQAVGAKGRLNF---IQQGRHLLIDDTYNANPTSMRAAAEVLA 358 Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGK 404 R++V+ G G + ++G+ Sbjct: 359 QQEGVRVMVMGDIGELGSSAAQQHYMLGR 387 >gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 497 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 156/397 (39%), Gaps = 28/397 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+AQGA ++V + P ++V+NT L+ A+ + ++A+ Sbjct: 55 ADAVAQGASGLLVDR--------LLPALSVPQVLVENTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I + +G G T + ++N + P + A + ++ Sbjct: 107 TGSNGKTSVKALLLSILEEAG---RVDGTTVYANPGNRNNEIGLPLAVIAAPDDADVAI- 162 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A G + D + N+ H++ + K ++ LP Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVARTKSAIYAA-LPA 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVE 296 + A+I ADDA+ ++ H V G + + Q T+ Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTP 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + PLPG V NAL AAGL + GI ++ L + V GR +S Sbjct: 278 QGEAQIALPLPGRHNVLNALAAAGLALGAGIALPIIAAGLAQARPVAGRQIAHTLSSGAV 337 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 I Y SL+ + + G +V G + Sbjct: 338 LIDDSYNANPGSLDAAIDTLAA-APGAGWLVLGDMRE 373 >gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 14] Length = 272 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|58700177|ref|ZP_00374680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533307|gb|EAL57803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 95 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 2/91 (2%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQD 460 MGKIA AD I+TDDN R EDP KIR +I+ P +E G R EAI +++ N+ Sbjct: 1 MGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGM 60 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +L+VAGKG+E I+ N D ++I+ Sbjct: 61 ILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 90 >gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia algicida OT-1] Length = 423 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 127/393 (32%), Gaps = 37/393 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++DSR I IF A+ G+ +G+ + A+ +GA +V + Sbjct: 14 NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT------- 66 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V++ + L A+ + I+++TG++GK++ + + + ++ G + Sbjct: 67 -ILVNDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLN 125 Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + + I + + + + S+ +G T Sbjct: 126 NHIGVPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGY--------------IT 171 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ + K L++ L + + DD + Sbjct: 172 NFGKAHLEGFGGIEGVIIGKSELYDYLKASDKFIFVNGDD---------TKQVERTQDAN 222 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 Y + +S L G + N A + ++S Sbjct: 223 TYVFGGSDTYDLSIEFLTANPMVSCAVDGKKIQSQLIGSYNFSNIAAAIAIGTYFKVNSD 282 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E +E R + + N I Y S++ L N +T I G Sbjct: 283 DIKEAIEAYIPSNNRSQILTKN-TNKIILDAYNANPTSMKAALDNFSDLTDTSKIAFLGD 341 Query: 391 G---GDRDQGKRPIMGKIALDL-ADIAIVTDDN 419 GD + + + A L + + +N Sbjct: 342 MFELGDSAKEEHQFINDYAASLEIEKIYLIGEN 374 >gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] Length = 471 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 150/471 (31%), Gaps = 38/471 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V DSR ++ G +F A G++ DGH + Sbjct: 1 MIALSLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A AT P +VVD+ + L A + + ++A+TG Sbjct: 60 ----------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G + T Sbjct: 110 SAGKTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEE-------------TEH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLP 239 + + A G ++ + G N+G HI ++ AK + Sbjct: 157 LVLEMGARGIGHIRYLTELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGE 216 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 A++ ADD + + R ++ + + T+ Sbjct: 217 DGGVAVLNADDPLVRAMASRTKARVLLFGEADDAAVRAENVRLTELG-QPTFTLHTPTGC 275 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRI 358 D L GE V NAL AA + + + ++ + L + R E + Sbjct: 276 SDVTMRLYGEHHVSNALAAAAVAHELDMSASEIALALSEADTLSRWRMEVTERPDGVTVV 335 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIA 413 Y S+ L+ + + GR V G GD + +G++A+ L Sbjct: 336 NDAYNANPESMRAALRALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKL 395 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 396 VAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRRELRPGDVVLV 445 >gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thiomicrospira crunogena XCL-2] gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 474 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 67/393 (17%), Positives = 137/393 (34%), Gaps = 36/393 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L DL+ L +L + VS+D+R +++G +++AI G DGH FI Sbjct: 4 NLADLVEAVNGVLAGEL----LGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFIG 59 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AV 120 +A+ QGA A+++S P ++VD+TR FA+ + L V Sbjct: 60 EAVRQGAVAVLISEPMETV---------VPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 TG++GK++ + + I + G + L+T + + + Sbjct: 111 TGSNGKTTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVK 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + L I + L + + Sbjct: 171 ---------------EIAYLTQIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVC 215 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298 + A++ D + ++++ G V++ G + + N+ T+ + + Sbjct: 216 EGGKAVLNTDSPGFEYWIEKSQQLGLSVITFGQARFANVQVTDFTQAENQITFTLDLNWQ 275 Query: 299 DFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + P+ G NA A C+A+G+ + + L V GR + + Sbjct: 276 NIRQAEVVTMPVLGFHNAMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSK-LPQ 334 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 G I Y +S++ + + + + + Sbjct: 335 GLLIDDSYNANPSSVKAAIDALVQLPGPSAVCL 367 >gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus oralis ATCC 35037] Length = 457 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 75/485 (15%), Positives = 153/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLTAFQTLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + + AK ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPAD----SIVEDYLPTDKKVVRFGPGAE---LEITDLVERKNSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKKVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] Length = 449 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 41/450 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E V DSR I+ +FV + G + DGH F QA GA A + S + Sbjct: 18 NETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIE 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ V +T K A K I+ +TG++GK++ V+ + + + Sbjct: 71 PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130 Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + T + + + +A++ L Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +++ + ++ PA + + + + Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLTQTIE 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + + T+ P+ G + V NAL+A G+ Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380 G+ + E L + R ++V + + Y ++ ++L + R + Sbjct: 286 GRHFGVADEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +GR I V + + ++A L D + +++ + Sbjct: 346 AGRRIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFLYGKEMQALQKRLANTALADKVR 405 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + I + IE L D LV+ KG Sbjct: 406 YFAIDEKPQLIASLIETLEPSDSLVI--KG 433 >gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] Length = 425 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 73/441 (16%), Positives = 153/441 (34%), Gaps = 48/441 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I+ +F A+ G+ +G+ + +A+ +GA +V Sbjct: 16 VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKT-------- 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V + + L A+ + ++ +TG++GK++ V + + IG + Sbjct: 68 ILVKDVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 LT +A + Q + + G TN Sbjct: 128 H-IGVPLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLA------------QPDYGYITNF 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L++ LL + + ADD + + G + G+ Sbjct: 175 GKAHLEGFGSVEGVIEGKSELYDYLLANQKSIFLNADDPIQHKKL------GHYIKKYGF 228 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K+ + + V++S +D + L G + N A + ++ + Sbjct: 229 TTAKKEYFKIKFLISDPYVSLS--VEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDI 286 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +E R + S G RI +D Y S+++ L+N +++ I G Sbjct: 287 KTAIESYIPQNNRSQI--IESNGTRIILDAYNANPTSMKVALENFNSLSGEPKIAFLGDM 344 Query: 392 GDRDQGKRPIMGKIALDLADI----AIVTDDN-----------PRSEDPEKIRAEI-IHG 435 + IA + + + DN E A++ + Sbjct: 345 FELGATSNEEHQNIADLTSSLDISEVFLVGDNFYRTKTPLKKFKNYEALALYLADVELPS 404 Query: 436 IPGFIEKGNRIEAIRTAIEML 456 + KG+R A+ +E+L Sbjct: 405 NSTILIKGSRGMALERLLELL 425 >gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. K90mix] Length = 457 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 145/389 (37%), Gaps = 31/389 (7%) Query: 6 LIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I EL + + ER V +D+R G +FVA+ G + D H + A Sbjct: 1 MIRMTGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--AA 58 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A ++V + P +VV +T + L A + ++A+TG++ Sbjct: 59 DLPAAVLLVERVLDVPH---------PQVVVADTGEALGRLAQHWRRRSRARVIALTGSN 109 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ ++ I + G G + P+ L + Sbjct: 110 GKTTTKEMLRCILEGVGSVHATQGNLN----------NEIGVPLTLL---AMPEDTDYAV 156 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A+ G + + TN GR H++ + + +AK +F L + A Sbjct: 157 IEMGANHAGEIGRMARWTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTA 216 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +I DD ++ + + C+ S+ G+ + + ++ +++ G D Sbjct: 217 VINLDDPFADYWLSLNEHHHCQRFSLEGGGEIEGVWQA-----PDRLRLTILGAGRDLRL 271 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PG NA+ AA A+G+ + L V GR + + S Y Sbjct: 272 ASPGRHVAANAIAAAAAANAVGVAIDAIANGLAGWTPVQGRLQELWHVSGARLWDDTYNA 331 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD 393 +SL L+ + + GR I+V G G+ Sbjct: 332 NPDSLRAGLEVLAAM-PGRRILVLGAMGE 359 >gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] Length = 509 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 54/429 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +S+D+R I+ G +F+A+ G DGH F+ +A +GA A +VS + Sbjct: 27 SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSE---------GKYKSF 77 Query: 91 PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++V +T K L AS ++AVTG+ GK++ + + + G+S G Sbjct: 78 PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHASEG 137 Query: 149 PTSTI----------------------------------SSFAQDNRLTTPSP--IYLAK 172 + S +T P Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKISNPNIAVITNIEPAHTENFS 197 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +L ++ + + ++ L R + S N + + +R Sbjct: 198 SLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIR 257 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 E + ++I D + + + Sbjct: 258 NDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKI 317 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + + GE Y+ L A + ++G+D + + L+ V GR Sbjct: 318 RLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVK 377 Query: 353 SRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 I+ Y + S++ +K + T ++ R + + G GD + KI Sbjct: 378 CNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKII 437 Query: 407 -LDLADIAI 414 + D Sbjct: 438 TENNIDKVY 446 >gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] Length = 477 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 68/363 (18%), Positives = 120/363 (33%), Gaps = 18/363 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR + G +FVA+ G + DGH F+ A GA VVSS + Q S Sbjct: 32 VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV D+ A+ + ++ + G++GK++ V + + G Sbjct: 92 LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGN--- 148 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + + + + + G + G TN+ Sbjct: 149 -------YNNHLGVPLTLFQLRRD---TEMAVIEMGINHPGEMAFLASIARPTHGLLTNI 198 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G +H+++ + A+ LF+ L A + DD C G Sbjct: 199 GHEHLEFFGSLDGVAKAEAELFDYLEVSGGTAFVNLDDHRLAAAGASLSRKICYGAVPGE 258 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + T+ E G V NA+ AA + G+ Sbjct: 259 PCAWWAEEVGSDRVGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQ 318 Query: 332 VLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388 + L +L R E + + Y +S+ + L + ++ GR + V Sbjct: 319 IASGLGELMPASGWKRMELLEAGGV-VVLNDTYNANPDSVRLALDTLASLDCSGRKLAVI 377 Query: 389 GCG 391 G Sbjct: 378 GDM 380 >gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 121/252 (48%), Gaps = 3/252 (1%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 TT S I + + LS + + T ++E SSH L QHR+ + A FTNLGRDH+DYH Sbjct: 8 NTTASAIEVQQILSNMLAHKATFAAMEVSSHALVQHRVAALTFAATVFTNLGRDHLDYHG 67 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 Y AK LF K+ + + ++ + + G+QG ++ Sbjct: 68 DMVTYEAAKKSLFFGHESKKHIINVDDEVGQRWLPQLPNAVAVSTAHHIPSGWQGAWLSA 127 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 +K+ N + + L G F V N L+ +A+ +L+ KL Sbjct: 128 QKIQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD+GKR Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246 Query: 400 PIMGKIALDLAD 411 P+MGKIA LAD Sbjct: 247 PLMGKIAETLAD 258 >gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF) [Rickettsia prowazekii str. Madrid E] gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL- 2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF) [Rickettsia prowazekii] gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia prowazekii Rp22] Length = 449 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 61/363 (16%), Positives = 124/363 (34%), Gaps = 25/363 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH +I AI +GA A++VS + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++V+N+ + L A +A+TG+ GK+S ++ + Q + G Sbjct: 76 -IILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + L L+ ++ + +H + L I + Sbjct: 135 NNY--------------LGLLINLASMADDTEYAIFELGMNHQGEISELVQILKPNIAMI 180 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N + + K AII A + +++ N + Sbjct: 181 NNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYS 240 Query: 271 GYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 K + + + + K D P N + +G D Sbjct: 241 FGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + ++L + + GR + I Y + S++ L+ ++ + + + Sbjct: 301 IEISAKYLADIALTKGR-GKIINIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSII 359 Query: 389 GCG 391 G Sbjct: 360 GEM 362 >gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Flavobacteria bacterium MS024-3C] Length = 428 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 63/383 (16%), Positives = 135/383 (35%), Gaps = 35/383 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS+DSR I++ I+ A+ G + +G+ F A+ GA VV +A Sbjct: 14 KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPG------- 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V + K L + ++++TG++GK++ + ++ + +S +G Sbjct: 67 -CIYVADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNL 125 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 +N + P + K + + + ++H + L + + G Sbjct: 126 --------NNHIGVPLSLLNIKESTEFAVIEMG------ANHQKEIEFLCALAQPDFGCI 171 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ Q K L++ L+ + +D +++ ++ Sbjct: 172 TNFGKAHLEGFGGVQGVIKGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHSISFGKD 231 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 LK ++ ++ +D L G + N ++AA + + Sbjct: 232 QESTYTTSILKS--------NTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPI 283 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIV 386 + +E R E + Y +S+E+ +K+ +T IV Sbjct: 284 QDIKNAIESYKPNNNRSELRQIGPH-MLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIV 342 Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409 V G + + I L Sbjct: 343 VLGDMFELGETAAKEHQAIVAQL 365 >gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 154/395 (38%), Gaps = 22/395 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I + + + I+ V +D+R + +G ++VA+ G + DGH F A+A+GA ++V Sbjct: 2 IAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVD 61 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + P +VV NT L+ A+ + ++A+TG++GK+SV + + Sbjct: 62 R--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLL 113 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I +G G T+ + ++N + P + A + L+ + A G Sbjct: 114 AILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-----VYEMGAGKPGD 165 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D + N+ H++ + K ++ LP + A+I ADDA+ Sbjct: 166 IAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPADGVAVINADDAFGA 224 Query: 255 EVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++ + V G I +++ Q ++ + + PLPG Sbjct: 225 WFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL A GL + GI ++ L + V GR + T + G + D + + Sbjct: 285 NVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGAVLIDDSYNANPGSL 343 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + G +V G + + Sbjct: 344 DAAIDALAAAPGEGWLVLGDMRELGPEAPALHAAA 378 >gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] Length = 467 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 125/359 (34%), Gaps = 30/359 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR +AG F+A+ G + D H FI Q AQG E +VS Sbjct: 36 QIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQGCEIAIVSRPVDA--------- 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + LVV++TR L + ++P+ ++A+TG+SGK++ + I R + Sbjct: 87 DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTR 146 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + P + + AS G + ++ Sbjct: 147 GNLNNDLGVPVMLLELRPE-------------HQYAVMELGASHQGEIDYTSKMVQPHVA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H+ + AK ++ + A D +++ + Sbjct: 194 GIINIGTAHLGEFGGRDGICRAKSEIYAHISETSII---PAADDFAEVIRAAVRTEKSLS 250 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G ++ V T++ P GE V NA AA +AIGI Sbjct: 251 FGAG---GEVYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAFALAIGI 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ++ LE+ GR F+ I Y S+ + + R++V Sbjct: 308 GLDDIVAGLEQAVGAKGRLNFIPHKDY-LFIDDTYNANPGSMRAAAEVLAQQQGIRVMV 365 >gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum NCIMB 41171] Length = 513 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ Q + SDSR ++ G +FVAI G + DGH F+ +A GA +V Sbjct: 18 IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128 +VV +T L L A+R P ++ +TG+ GK++ Sbjct: 78 QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 128 Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + G + +G + I ++ + ++A+ + + ++ Sbjct: 129 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 188 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + GS + + + Q A + + + +P Sbjct: 189 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 248 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + A + S F + +G + Sbjct: 249 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 308 Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363 G V NAL AA + +G+ + + + P R G + Sbjct: 309 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 368 Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 +S+ L R+ I V G G + +G+ A L A++ Sbjct: 369 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 428 Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465 N E + + + + G P + +A + D +V+ Sbjct: 429 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 487 Query: 466 GKG 468 KG Sbjct: 488 -KG 489 >gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 432 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 136/376 (36%), Gaps = 22/376 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G +G+ F +A+ G+ +V + +T Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV+N+ K L A+ + I+ +TGT+GK++ + + ++ + +G Sbjct: 68 RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P + V + AS G + ++ + G T Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K +++ L ++ I +D + + + Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + E K + L GE+ NAL A + G++ Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L R + T I Y S+ + N R + + +++ G Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIA 406 + + KIA Sbjct: 352 MRELGKDSADEHQKIA 367 >gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase D-alanyl-D-alanine-adding enzyme; D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 459 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 114/396 (28%), Gaps = 25/396 (6%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L K +S+ S+ IQ +FV + G + DGH +I A+ GA + + Sbjct: 18 LKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYIADALKAGATGFLCEKNH 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 + + + V +T L A+ + ++A+TG+SGK+S + + Sbjct: 77 PILKNLSNEDQKKA-IFVKDTLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDLLGGLF 135 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G S + +N + P + V + + G Sbjct: 136 SFLGSKSLVVT------EKNYNNEIGVPFTL-----FRITERTQVVICEMGMNHRGEINR 184 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + TN+G HI+ ++++ + L + D + Sbjct: 185 LSKMAEPTHALITNIGSAHIENLKSRENIA-EEKIDIINGLRPNGVLFVPDDLDFLGRAK 243 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +R + + + + + +E + + +PG + N Sbjct: 244 QRTKKSNVNLKIWKHSKNPELKVNIVQKNG-----FLLEWRMEKIQWNIPGSKLLSNVRG 298 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + I + + + R I Y S+ + Sbjct: 299 MIAVGNFFQIPDVEMKKTIRTYKSPNKRLNIKK--GFYTIIDDSYNANPESMLSSIDASI 356 Query: 378 TITSGRIIVVF----GCGGDRDQGKRPIMGKIALDL 409 + IV G + +GK Sbjct: 357 QYAQNKPIVWVLGTMKELGKFSKFYHEEIGKNLKKY 392 >gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] Length = 473 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 132/373 (35%), Gaps = 21/373 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++AG +FVA+ G + DGH ++ QA GA +VV N P Sbjct: 43 VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVVEH--------VETGLNVPQ 94 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV+N+R+ L A + + AV G++GK++ ++ I Sbjct: 95 LVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIHATEGN 154 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + L + + E + D I+ TN Sbjct: 155 FNNDVGVPHT----LLGLHCGCRAAVVEAGMNHRGEMARLA------DWIRPTVVLMTNA 204 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H Y +T L LP + A+ ADD + A G R L+ Sbjct: 205 QREHQAYLETVAEAAFENGLLIAA-LPNDGVAVYPADDPCADVWASYALARGVRTLTYAT 263 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + K ++ + G ++NA+ AA +A ID + Sbjct: 264 AEGVAADVRGELVPGKGLRLLAYGIDRVIG-LQVQGAHNIHNAVGAAAAALAQQIDVDAI 322 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E L +PGR + + + I Y +S + + R I +FG G Sbjct: 323 AEGLAAFKALPGRGARMASPAGFTLIDDAYNCNPDSAIASIAMLAEEKPAR-IFLFGDMG 381 Query: 393 DRDQGKRPIMGKI 405 + + ++ Sbjct: 382 ELGRDAELWHAEV 394 >gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei DM98] Length = 303 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] Length = 476 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 155/456 (33%), Gaps = 45/456 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R +QAG IFVA+ + DGH F+ QA+ +GA A +VS + + Sbjct: 24 TGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVS------HVPQGVPEDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V + ++ L + ++AVTG+ GK+S + + G + + Sbjct: 77 PLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVASY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + +H + L + + Sbjct: 137 NNHWGV----------PLTLARMPRDTEFAVIEIGM----NHPGEIAPLAKMAAPHVALI 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + E + AI+ AD S +M +A + R ++ Sbjct: 183 TTVAAAHLEAFEDITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRLRDITF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G G L + + V + + PG NAL A + A+ D A Sbjct: 243 GEHGYDFKLMRADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVA 302 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRII 385 L L L + GR + +D ++ +N M + Sbjct: 303 LALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAK--- 359 Query: 386 VVFGCGGDRDQGKR-PIMGKIALDLADIAIV---TDDNPRSEDPEKI--RAEIIHGIPGF 439 V G +G+R +G + D + P +++ + I ++ + Sbjct: 360 -VTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDA 418 Query: 440 IEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468 + + R EA ++ DV++ KG Sbjct: 419 LPEPQRGTWFETAEEAATRVKTHIDSGDVVL--AKG 452 >gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 147 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 25/154 (16%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56 MKL++L + + KI + DSR I G +F+ + G DG Sbjct: 1 MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51 Query: 57 -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 H F+ A+ GA A++V +++ P ++V + R +++ AS YG Sbjct: 52 RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + + +TGT+GK++ + +++I G + + Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLM 136 >gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] Length = 467 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 95/475 (20%), Positives = 155/475 (32%), Gaps = 44/475 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +I E+ + + + + V +DSR AG IF A+ G DGHLF Sbjct: 1 MIELSIAEIAAAIGGELVDGTDGKRRLPPV-AVQTDSRLSTAGSIFFALRGETTDGHLFA 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA----SRLYGKHPEN 116 A+ GA IV A + + ++V++ L A +R+ Sbjct: 60 HTAVENGATLIVAERALDI---------DVAQIIVNDGVTALQALARAVVARVRENGQLK 110 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +LAVTG++GK++ + ++ I +R G + G + T S YL Sbjct: 111 VLAVTGSNGKTTTKNMLRTILEREGETVAPKGSFNNDVGAPITMLGVTNSSKYL------ 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V + A G D RL I + + A Sbjct: 165 -------VVEMGADGIG-DITRLQSIVMPDVGIVLMVGLAHIGKFGDAATTALAKSEMVT 216 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LP +S A++ DD + + + ++ A + V Sbjct: 217 ALPPQSTAVLNYDDGRVRAMA--PQTEATVNFFGLDSHSDVWADEIEASARGTAFDLHVA 274 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRG 355 + + GE V NAL A A+GI LE + R E + Sbjct: 275 DEVVPVQLRILGEHHVTNALAAITAARALGIPVQRSAVALESIDRAERWRMELLEAPGGI 334 Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 I Y + +S+ LK + + R + V G G+ + +G++ + L Sbjct: 335 TVINDAYNASPDSMAAALKTLVQVVGPENRSVAVLGEIAELGEYANEEHDRIGRLIVRLN 394 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 IV R G + N EA E L DV++V Sbjct: 395 VQKLIVVGHAARHIHNAAGLEGSWDG--ESVLVDNVEEAYAVLREELRGGDVVLV 447 >gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C300] Length = 457 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 73/485 (15%), Positives = 147/485 (30%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEKEVE----------GYPYILVDDVLSAFQTLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + + AK ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + K +T Sbjct: 209 MAPDSLLLAPADP----IVEDYLPTDKKVVRFGQGADLEVTDLIE---RKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P+ G++ NA++AA + + G+ + + + L + R E+ + + Sbjct: 262 GQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAILANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] Length = 450 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV +VG + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLVGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] Length = 465 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 90/451 (19%), Positives = 149/451 (33%), Gaps = 51/451 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS D+R IQ G +FVA+ G + DGH F+ QA +GA ++ S P Sbjct: 28 GVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFEKGAAGVIASRQVFG-----------P 75 Query: 92 ILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V +T L A+ AVTG+ GK+SV + +G + + Sbjct: 76 AVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTSVTQAIMAGLTLAGPAHSSVKS- 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGS 208 P+ LA+ + E + D+ R ++ A Sbjct: 135 ---------YNNHIGVPLTLARMPRGTAR-----AVFEIGMNHADEIRPLSRMVRPHAVV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T +G H + +A E L A++ AD+ + + A AG V Sbjct: 181 ITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGEAERAGATVR 240 Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + L V + GK DF G N++ + A+G+ Sbjct: 241 TFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVLLMLEALGV 300 Query: 328 DSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS-GR 383 D L L + GR E G +D Y S+ + + + GR Sbjct: 301 DLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATLGARETAGR 360 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 IV G + + + A + + + +P Sbjct: 361 RIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFC--------AGPLMKSLWDALPPTR 412 Query: 441 EKGNRIEAIRTA---IEMLNKQDVLVVAGKG 468 G A A ++ + DV++V KG Sbjct: 413 RGGYAESAAELAPQVVQAVEPGDVVMV--KG 441 >gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei BCC215] Length = 300 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium bifidum S17] Length = 519 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ Q + SDSR ++ G +FVAI G + DGH F+ +A GA +V Sbjct: 24 IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128 +VV +T L L A+R P ++ +TG+ GK++ Sbjct: 84 QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRTVGTPFTLIGITGSVGKTT 134 Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + G + +G + I ++ + ++A+ + + ++ Sbjct: 135 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 194 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + GS + + + Q A + + + +P Sbjct: 195 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVATMAPLAPQ 254 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + A + S F + +G + Sbjct: 255 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 314 Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363 G V NAL AA + +G+ + + + P R G + Sbjct: 315 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 374 Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 +S+ L R+ I V G G + +G+ A L A++ Sbjct: 375 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 434 Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465 N E + + + + G P + +A + D +V+ Sbjct: 435 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 493 Query: 466 GKG 468 KG Sbjct: 494 -KG 495 >gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 91] Length = 289 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA] Length = 432 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 79/419 (18%), Positives = 154/419 (36%), Gaps = 34/419 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G+ +G+ F +A+ G+ +V A + +T Sbjct: 14 TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVPAG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VDN+ + L A+ + I+ +TGT+GK++ + + R + G Sbjct: 68 HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + V + AS G + ++ + G T Sbjct: 128 N----------NPIGVPLTLLRLQAE---HDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K L++ L K I D + N Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQD 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + EG + L GE+ + NAL A + G++ Sbjct: 235 GLYVNGHVTGN--SPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L + R + T I Y S+ + N + +G+ +++ G Sbjct: 293 KIDQALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLASISNFHNMQAGQKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIA-----LDLADIAIV------TDDN-PRSEDPEKIRAEIIHGIP 437 + + KI D D+A+V T N P D + AE+ P Sbjct: 352 MRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPTYPDAPALIAELQKNKP 410 >gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] Length = 470 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 21 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 71 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 72 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 125 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 126 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 185 >gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] Length = 450 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] Length = 450 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] Length = 450 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S + P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] Length = 459 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 160/443 (36%), Gaps = 33/443 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + N V++D+R + G +FVA+ G DGH F+ +A QGA A VV Sbjct: 25 KLTFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDC--------IDA 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P L+V +T L A+R ++A+TG+SGK++V I Q+ G + Sbjct: 77 AVDLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQQMGPALIT 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + P+ L + + AS + + +K Sbjct: 137 QGNLNNH----------IGVPLTLFGLAPEHRFGA---IELGASGLNEIAYTVAMVKPQV 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN G+ H++ + Q AK + + + + D A+ + +++ Sbjct: 184 AILTNAGQAHLEGFGSYQNIVLAKGEIIDGVADDGLVVLNRDDPAFDQWLVRAGRRRVAS 243 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V G+ G KV A Q +G D L GE + NA +AA +G Sbjct: 244 VSRAGHAGAD---YKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELG 300 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + LE++ V GR I Y S++ L + S R I Sbjct: 301 ATNEHIKAGLEQVLAVKGRLHIQPLAQGWTLIDDSYNANPASIKAALAVLAKRPSPR-IA 359 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNR 445 V G + + + ++A D+ I R G +E + Sbjct: 360 VLGAMAELGEQAAQLHREVAQYARDLGI-----ERLLAVGPGCEGYGRGFGATVEICASH 414 Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468 +AI ++ ++V KG Sbjct: 415 DQAINAVLKNTQVPATVLV--KG 435 >gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 509 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 69/429 (16%), Positives = 137/429 (31%), Gaps = 54/429 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +S+D+R I+ G +F+A G DGH F+ +A +GA A +VS + Sbjct: 27 SNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKGAIAAIVSE---------GKYKSF 77 Query: 91 PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++V +T K L AS ++AVTG+ GK++ + + + G+S G Sbjct: 78 PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137 Query: 149 PTSTI----------------------------------SSFAQDNRLTTPSP--IYLAK 172 + S +T P Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFS 197 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +L ++ + + ++ L R + S N + + +R Sbjct: 198 SLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIR 257 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 E + ++I D + + + Sbjct: 258 NDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKI 317 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + + + GE Y+ L A + ++G+D + + L+ V GR Sbjct: 318 RLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVK 377 Query: 353 SRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 I+ Y + S++ +K + T ++ R + + G GD + KI Sbjct: 378 CNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKII 437 Query: 407 -LDLADIAI 414 + D Sbjct: 438 TENNIDKVY 446 >gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens NRL30031/H210] Length = 455 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 129/408 (31%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR IQ G +F A+ G + D H F+ + Sbjct: 15 LPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCAALKGALKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + ++ P+ L + + + G Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S+ + + Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMRAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDN 397 >gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum NCIMB 41171] Length = 519 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ Q + SDSR ++ G +FVAI G + DGH F+ +A GA +V Sbjct: 24 IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128 +VV +T L L A+R P ++ +TG+ GK++ Sbjct: 84 QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 134 Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + G + +G + I ++ + ++A+ + + ++ Sbjct: 135 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 194 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + GS + + + Q A + + + +P Sbjct: 195 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 254 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + A + S F + +G + Sbjct: 255 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 314 Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363 G V NAL AA + +G+ + + + P R G + Sbjct: 315 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 374 Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 +S+ L R+ I V G G + +G+ A L A++ Sbjct: 375 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 434 Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465 N E + + + + G P + +A + D +V+ Sbjct: 435 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 493 Query: 466 GKG 468 KG Sbjct: 494 -KG 495 >gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 148/476 (31%), Gaps = 46/476 (9%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + +++ + + + DSR +F+AI G DGH F+P + +G Sbjct: 7 EIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +++V+ + + N P VV +T K ++A+TG+ GK++ Sbjct: 67 KSVVI-----KEGMQKLLPDNFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTT 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V ++ + G + T + +E Sbjct: 122 TKEMVGEVLNKLGKIKLSHANFNNEIGVGLTILATDKE---------------DKVLVLE 166 Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 GL Q + K TN+G HI +++ AK + + L PK I Sbjct: 167 MGMRGLGQIENLSKYSKPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIP 226 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFP 305 D + + + +V + + + K ++ ++ F Sbjct: 227 ANDLLLEETLREYWKGRVTKVELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEIS 286 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G N L+A + +GID + + + + + Y + Sbjct: 287 FEGFHNASNFLLAYAVAKELGIDFESFNKFDFVSLGGRNK---ILKSVKTTIYDESYNAS 343 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 S++ +K + + +FG +G+ + +N E Sbjct: 344 PESVKACIKTLLEKPRNKF-FIFGSMQ--------ELGEESEKFHKEIFNLINNSDIEKC 394 Query: 426 EKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 I + I F+ N + + + K D +++ KG + Sbjct: 395 LFICDKKNKKIYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRSWQ 448 >gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei B7210] Length = 297 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 9] Length = 298 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 466 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 139/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ I DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ L + GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] Length = 449 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 156/475 (32%), Gaps = 49/475 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + + I+ + DSR + +FV + G + DGH F Sbjct: 1 MNLS------IKEVAALFGVECAD--QTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA +GA A S + I+ V +T A K ++A+ Sbjct: 52 QQAQEKGAIAAFWS------HPTIQPPEGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + G +N + P I L + Sbjct: 106 TGSNGKTTTKDMVDAVVAQQFKTYKTQGN--------HNNEIGLPLTI-----LHAPADT 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + G + + + T +G HI+ +++ AKM + L P Sbjct: 153 EVLVLEMGMDHAGEIEVLSHLAQPDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPA 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I + + + + L G I + + Sbjct: 213 GFFMIPADEPLLTPYLAELTQQVETFGLGEGNLKGTIQEETQEQTAFTVADQV------- 265 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ G + V NAL+A G+ +GI+ + L + R +++ + + Sbjct: 266 -YTIPVIGGYNVKNALIAIGIGRYLGIEEEKIKAGLADFQLTKNRTQWLKAANGAAILSD 324 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y ++ ++L + R + +GR I V G M + D+ + Sbjct: 325 VYNANPTAMGLVLDSFRKLPLTGRRIAVLADMLELGPDSAKMHAGMADHLDERFDLIFL- 383 Query: 417 DDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468 SE RA + +A I + L D +V+ KG Sbjct: 384 ---YGSEMQALKRALDQSRLADRVHFFSKEEKAALITQLQKELQPTDSIVL--KG 433 >gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 7894] gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 112] Length = 289 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + ++ Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137 Query: 150 TSTISSFA 157 ++ Sbjct: 138 AGNFNNDV 145 >gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] Length = 472 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 155/452 (34%), Gaps = 34/452 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + + V+ DSR + G +F+A+ G DGH F+ + + A Sbjct: 20 YGDFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDK-----------AFAAGAAGAIV 68 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P + V +T L + + ++ VTG+ GK+ + R+ Sbjct: 69 SDACDGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGTKEALYACLDRA---- 124 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + + T P+ LA+ + + + S RL ++ Sbjct: 125 ----LPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFE-MGMNHSGELAALTRL--VRP 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T + H + ++ +AK +F+ L P I Y + + +A Sbjct: 178 HVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIAAAKPHAA 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + +H + V + +++ + + F PGE V NA+ A Sbjct: 238 RILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVIAAVWA 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEF------VGTNSRGGRIYVD--YAHTSNSLEMILKNI 376 +G D A ++ +PGR + G G + +D Y S+ +K + Sbjct: 298 VGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAATIKML 357 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + R + V G + G +A L D + SE A + G Sbjct: 358 GRERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAA--LANALEGR 415 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 F + AI + + D +++ KG Sbjct: 416 IEFEHVPDADAAIESIEAKIAPGDAILI--KG 445 >gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] Length = 464 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + LI + + + I+ VS+D+R + G ++VA+ G + DGH F A A+G Sbjct: 2 KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++V + P ++V ++ L+ A+ + + A+TG++GK+ Sbjct: 62 ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKT 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SV S + I Q+ + + + ++N + P + A + + + Sbjct: 113 SVKSLLLSILQQVAQHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 A G + D + N+ H++ + LP + A+I Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DDAY + + R + Y I + + A Q T+ + + Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVL 283 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG V NAL AA L +A G+D AL+ L + VPGR + G + D + Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGR-QIAHQLRNGAVLVDDSYN 342 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + + +V G + + + Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383 >gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes str. Manfredo] Length = 463 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 155/480 (32%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 + D+ + + ++ +++ E+ ++ EA+ ++ LN D +++ KG Sbjct: 384 VFYGDHIK--ELARLASQVYSAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439 >gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] Length = 450 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S N P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] Length = 450 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S N P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] Length = 450 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 1 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S N P++ V + K + A+ K ++A+ Sbjct: 52 QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165 >gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] Length = 470 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L E+ + KI V DSR I G +FV + G + DGH FI Sbjct: 21 MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 71 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAI GA A S N P++ V + K + A+ K ++A+ Sbjct: 72 QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 125 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++ + + G + + T + + + Sbjct: 126 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 185 >gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK49] Length = 456 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSERPVVEGA----------YILVDDVLTAFQRLAQYYLKKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ + + Sbjct: 262 EQSIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR +VV + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLVVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467 TD +D E + EI G + K + E ++ A+ L D +++ K Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVQYFVKNDEKDQFEQLKQAVREKLTPADQILL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] Length = 469 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 130/384 (33%), Gaps = 26/384 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +SSD+R +Q G +FVA+ G D +L++ QA+ GA I+ S + Sbjct: 32 FHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGASGILCSRPPAQSLP------- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+ VV + ++ A + +TG+SGK++V + I + G Sbjct: 85 IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEMLGLIVSSRYRTGITRGN 144 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ L S + + + S+ G H + + G Sbjct: 145 LNNH----------IGLPLTLLNCPSD---RTHLVLEMGMSAPGEIAHLAELAQPQIGIV 191 Query: 210 TNLGRDHIDYH-----QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+ H+ + + LP + A++ A D + + A Sbjct: 192 TNILAAHVAGFGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTGCAI 251 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + I G+ F P G NA+ A Sbjct: 252 LSFGPQSSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAAAYG 311 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383 +G+D+A + E L + + GR + Y ++ + L+ + + + + Sbjct: 312 LGLDAAAMQEGLSRFKLQKGRGSVEHGQVGCRILNDTYNANVGAMRVALEALSHMAPAPQ 371 Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL 407 I V G + + + ++A Sbjct: 372 RIAVLGDMLELGEAADTLHAELAQ 395 >gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus infantis ATCC 700779] Length = 457 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 152/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVARVVGAKNDVTGYADSPLVKAEFDSRLIGPGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + + P ++V++ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEQEVA----------DHPYILVEDVLTAFQALAAYYLQKTGVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + + AK +L Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKLQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ ++ D ++ + V G L+ K +T+ Sbjct: 209 MEKGSLLLAPADPIVEDYL-------PTEQKVVRFGPGAELEITELTERKDSLTLKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EKSLDLPVTGKYNATNAMIASYVALQEGVTEEQIGQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ + V GD+ M ++ D D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHNQMILSLSSDALD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463 I ED + P + ++ EA ++ E L D ++ Sbjct: 382 TVIF-----YGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] Length = 460 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 79/406 (19%), Positives = 152/406 (37%), Gaps = 33/406 (8%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + E+ + I ++ I VS+DSR IQ G +++ ++G DG LFI + Sbjct: 1 MIERSLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTG 122 +GA A + + +++ + P + V++T K L A + ++ +TG Sbjct: 61 EDKGASAFLADTDCKIKN-----NISIPYIRVEDTLKSLQDLARAYRSELKNTKVIGITG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + ++ + IG +N + P I LS + Sbjct: 116 SNGKTTTKDLLYEVLKEKYKVQKTIGNL--------NNEIGVPKTI-----LSLDEDTNI 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V + S G + + TN+G H++ +T++ A E L ++ Sbjct: 163 AIVEMGTDSFGDISLTTNISRPDIAIITNIGDSHLEKLKTKEGILKA-KMEIVEGLSQDG 221 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I DD MK+ ++ + G+ V + + +S + Sbjct: 222 YFIYNGDDPT----MKKEISSYEVKQKMISFGEEDDNDFVVKSSDDNRGKVSFTHDGETY 277 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 PL G +YN V + +G+ + + + L ++ R G + D Sbjct: 278 TIPLLGSHNIYNGGVTVLVSSLLGLSTDQIKKGLSEVTPANNR--SSIIEFEGFDVLDDC 335 Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMG 403 Y SL LK + + I+V G GD + +G Sbjct: 336 YKSNPQSLRSGLKTTKLLGGYDSKILVLGDMLELGDSEDDLHYQVG 381 >gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacteroides sp. 4_1_36] Length = 432 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 22/376 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G +G+ F +A+ G+ +V +T Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV+N+ K L A+ + I+ +TGT+GK++ + + ++ + +G Sbjct: 68 RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P + V + AS G + ++ + G T Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K +++ L ++ I +D + + + Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + E K + L GE+ NAL A + G++ Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L R + T I Y S+ + N R + + +++ G Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIA 406 + + KIA Sbjct: 352 MRELGKDSADEHQKIA 367 >gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF [Bifidobacterium bifidum PRL2010] gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium bifidum PRL2010] Length = 513 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 76/483 (15%), Positives = 147/483 (30%), Gaps = 39/483 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ Q + SDSR ++ G +FVAI G + DGH F+ +A GA +V Sbjct: 18 IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128 +VV +T L L A+R P ++ +TG+ GK++ Sbjct: 78 QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAVGTPFTLIGITGSVGKTT 128 Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + G + +G + I ++ + ++A+ + + ++ Sbjct: 129 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 188 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + GS + + + Q A + + + +P Sbjct: 189 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 248 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + A + S F + +G + Sbjct: 249 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 308 Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363 G V NAL AA + +G+ + + + P R G + Sbjct: 309 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 368 Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 +S+ L + SG I V G G + +G+ A L A++ Sbjct: 369 ANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 428 Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465 N E + + + + G P + +A + D +V+ Sbjct: 429 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 487 Query: 466 GKG 468 KG Sbjct: 488 -KG 489 >gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 459 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 78/422 (18%), Positives = 150/422 (35%), Gaps = 27/422 (6%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++++ D + L+ P + ++ + +DSR I+AG +F A+ G + DGH F Sbjct: 2 IKNMKPLDLNFICQALN-LPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAED 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 +A GA A VVS A L V +T + L A + +TG Sbjct: 61 VLAAGAAAAVVSREDCAGLRGA--------LQVADTLEALQTLAQAWRENVNPFVFGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++V + + +R + +++ P+ L Sbjct: 113 SGGKTTVKEMLAAVLRRRFGEEAVLATAGNLNNHI-------GLPLTLL---KLNEKHRY 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + + G + A N R H+ A + L + Sbjct: 163 AVIEMGMNHFGELAVLTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGLGADG 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I +DA ++ + +A + + G +H + + + + Sbjct: 223 LALIPCEDANAEIF--QTASAAHKQQTFGVDKGGVHARNIVLKPLSCAFDLVCGSETASV 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P+PG V+NA+ AA L +A G+ V + L+ + GR + I Y Sbjct: 281 SLPVPGRHNVHNAVAAAALALAAGLTLNEVSDGLKDFSNIKGRLKVKRGIKGATLIDDTY 340 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTD 417 +S++ + + + + R + V G G+ + + M A + A Sbjct: 341 NANPDSMKAAIDVLAALPAPR-VFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVG 399 Query: 418 DN 419 DN Sbjct: 400 DN 401 >gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492] Length = 432 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 22/376 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G +G+ F +A+ G+ +V +T Sbjct: 14 TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV+N+ K L A+ + I+ +TGT+GK++ + + ++ + +G Sbjct: 68 RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P + V + AS G + ++ + G T Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K +++ L ++ I +D + + + Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + E K + L GE+ NAL A + G++ Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L R + T I Y S+ + N R + + +++ G Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIA 406 + + KIA Sbjct: 352 MRELGKDSADEHQKIA 367 >gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 457 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 155/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I+ G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLSAFQTLAAYYLEKSAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHK 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E L L + + AK ++ Sbjct: 149 PDDTEKLVLEMGQDHLGDIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + + K +T Sbjct: 209 MAPGSLLLAPADP----IVEDYLPTDKKVVRFGQGAELEVTDLIE---RKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ + Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLN 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] Length = 450 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 79/410 (19%), Positives = 147/410 (35%), Gaps = 27/410 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L P + IN++++DSR Q G +F A+VG D H F+P +A+GA A+V Sbjct: 9 VRRLFRLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSR 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + L VD+T L A+ + + +TG+SGK++V + Sbjct: 69 GDCASFSG---------CLKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + + + + ++ P+ L + + + + G Sbjct: 120 SILRTAHGADAVLATAGNFNNHI-------GLPLTLL---NLREPHRHAVIEMGMNHAGE 169 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 N R HI + LP+ AI+ A+D + Sbjct: 170 LATLTRIAAPNVALVNNAMRAHIGCGFNGVDDIARAKAEIYQGLPENGIAILPAEDDHLA 229 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +A + + L+ G +H + + + G P+ G+ + N Sbjct: 230 IF--QATVSAFKTLTFGATVGDVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNISN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A AA L IA G+ + L + GR + + + Y +S++ L Sbjct: 288 ACAAAALAIAGGLRQPEIARGLAAFSNIKGRLQRKNGIRQTLILDDTYNANPDSMKAALD 347 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + + R + V G G+ + + P M + A + A DN Sbjct: 348 VLAKLPAPR-VFVMGDMGELGEDEAPKMHEEIGIYARDLGIEYAYFVGDN 396 >gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697] Length = 432 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 141/384 (36%), Gaps = 24/384 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G+ +G+ F +A+ G+ +V A + +T Sbjct: 14 TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VDN+ + L A+ + I+ +TGT+GK++ + + R + G Sbjct: 68 HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + V + AS G + ++ + G T Sbjct: 128 N----------NPIGVPLTLLRLQAE---HDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K L++ L K I D + N Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQD 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + EG + L GE+ + NAL A + G++ Sbjct: 235 GLYVNGHVTGN--SPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPE 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L + R + T I Y S+ + N + +G+ +++ G Sbjct: 293 KIDQALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLASISNFHNMQAGQKMLILGD 351 Query: 391 GGDRDQGKRPIMGKIAL--DLADI 412 + + KI + D Sbjct: 352 MRELGKDSPEEHQKIVDYLEKCDF 375 >gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] Length = 457 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 158/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ + A+ K ++ Sbjct: 54 FIETAFENGAVVTLSEKEIA----------NHPYILVDDVLTAFQILAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTKYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MAPDSLLLAPADP----IVENYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ +K + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDKDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] Length = 475 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 169/468 (36%), Gaps = 43/468 (9%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ L R+ VS D+R ++AG +F AI G DGH F+ A +GA A V+ Sbjct: 12 LVGALHARVSGALAREATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFEKGAAAAVI 71 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 A++ + A P+L+V + ++ L + R + I A+TG+ GK+S Sbjct: 72 DEAHAAEFSGAG-----PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTSTKDMT 126 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + R G + + + P+ LA+ + + + G Sbjct: 127 RLMLSRFGETHASVASYNNQWGV----------PLTLARMPAASR---FGVFELGMNHAG 173 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + ++ T + H+++ + + +AK +F AII DDA Sbjct: 174 EITGLVAQVRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFS--ALDGGVAIINRDDATY 231 Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + A + S G +G L I + +V + GK + PG+ Sbjct: 232 ERLAAAAAPTAGHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIA 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSL 369 N+L A + ID L GR G +D Y S+ Sbjct: 292 LNSLAALLIAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSM 351 Query: 370 EMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSE 423 + GR I V G + + G++A+DLA + T Sbjct: 352 RSAFELLGATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFT------- 404 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNKQDVLVVAGKG 468 + A + + P + +R A+ + L DV++V KG Sbjct: 405 -AGPLMASLYYAAPNAMRAAHRRTALELEEAVLAALRAGDVVMV--KG 449 >gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] Length = 509 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 129/428 (30%), Gaps = 45/428 (10%) Query: 14 LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 I S+ + + ++ V DSR + +G +FVA+ G + DGH F +AI QGA A++ Sbjct: 11 AITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVAVL 70 Query: 73 VSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYGKHPENI-- 117 + + + + ++ LS A + + Sbjct: 71 AARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQGL 130 Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + VTG++GK+S + I + G + G + AL Sbjct: 131 DIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPY-------------TALR 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRL 233 + A G +H + G N+G H+ +++ A ++ Sbjct: 178 CDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIE 237 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 A++ ADD + + R + ++ + Sbjct: 238 ALPAAADGGVAVLNADDPFVASMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPS 297 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHLEKLHVVPGRFEF 348 + + + G+ QV NAL AA I G++ R + Sbjct: 298 FTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSAHRMDV 357 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD---RDQGKRPI 401 I Y +S+ + R I V G G+ I Sbjct: 358 RTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRI 417 Query: 402 MGKIALDL 409 +G + Sbjct: 418 LGSVLSKY 425 >gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii TCDC-AB0715] gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] Length = 466 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFLQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis MSMB43] Length = 269 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 VS+DSR G +FVA+ G + D H F+ +GA A +VS + N Sbjct: 26 FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSR--------SPAEWN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P L V +TR L A + ++AVTG++GK++V + I Sbjct: 78 LPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAA 127 >gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] Length = 473 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 151/473 (31%), Gaps = 41/473 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + P +R + V DSR ++ G +F A G + DGH + Sbjct: 1 MIALSLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A P +VVD+ L A + + ++A+TG Sbjct: 60 ----------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ +R + + G + T Sbjct: 110 SAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAE-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + G N+G H+ +++A AK L E LP++ Sbjct: 157 LVLEMGARGVGHIHYLAQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEA-LPEDG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R ++ + + D Sbjct: 216 VAVLNADDPLVRAMAARTQARVVLFGEAPDADVRGENVRLTDDG-RPAFALHTPTGCSDV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + +G+ + E L R E + Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSVAGTLSRWRMEVTERPDGVTVVNDA 334 Query: 362 YAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411 Y S++ L+ + + GR V G GD + +G++A+ L Sbjct: 335 YNANPESMKAALRALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 395 KLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446 >gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] Length = 468 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 30/382 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+ I + +DSR +AG F+A+ G + D H F+ Q + +G + +V L Sbjct: 33 PEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDKGCQVAIVERPLDL------ 86 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + LVV +TR+ L + ++P+ ++A+TG+SGK++ + I R + Sbjct: 87 ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + T + + AS G + ++ Sbjct: 144 VTRGNLNNDLGVPMMLLELTAE-------------HQYAVMELGASHQGEIDYTSQLVQP 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+G H+ ++ AK ++ + + I ADD H Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTD----AIRHAVQ 246 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + +G I+ ++ + Q + + P G V NA A +A Sbjct: 247 TTRVLSFGEGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 IGI ++ LE GR F+ I Y S+ + + + ++ Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQH-LFIDDTYNANPTSMRAAGEVLAQQSGIKV 365 Query: 385 IVV--FGCGGDRDQGKRPIMGK 404 +V G GD + +G+ Sbjct: 366 MVTGDIGELGDAAAVEHYRLGR 387 >gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] Length = 466 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 154/453 (33%), Gaps = 43/453 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEKGAGAALVSR------VPEGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ P+L+VD+ + L + ++AVTG+ GK+S + ++ G + Sbjct: 73 PADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTKEMLARMLSDQGRTHAA 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + P+ LA+ + + + G + Sbjct: 133 VASYNNHWGV----------PLTLARMPRDT---EYAVIEIGMNHPGEIAPLAKPARPHV 179 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T + H++ + K + E L A++ AD A + + A + G Sbjct: 180 AMVTTVAAVHLEAFDNVEGIAREKAAIMEG-LEPGGVAVLNADIAEAHVLRDVASDLGVS 238 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G L + G++ + G NAL A A+G Sbjct: 239 ARWFGESASDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACVEALG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTIT-SG 382 D L V GR GG I Y S+ L + G Sbjct: 299 ADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAATPGQG 358 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 R I GD + P ++ LAD+ D + D ++ + + + Sbjct: 359 RRIA---YAGDM-KELGPQEVELHAGLADL-----DAVKGIDKIHCIGPLMRALHEALPE 409 Query: 443 GNR-------IEAIRTAIEMLNKQDVLVVAGKG 468 G R EA+ + D+++ KG Sbjct: 410 GKRGGWYQTSAEAVPGLASEIQGGDIVL--AKG 440 >gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] Length = 474 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 84/475 (17%), Positives = 147/475 (30%), Gaps = 42/475 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + + V DSR ++ G +F A G DGH + Sbjct: 1 MIALTLAEIADITGGRPHDIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYAG- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A A P +VV + K L A + + +++A+TG Sbjct: 60 ----------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ Q + + G + T Sbjct: 110 SAGKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAE-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKE 241 + + A G + G N+G HI ++A AK L E E Sbjct: 157 LVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAE 216 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D M A + + + T+ D Sbjct: 217 GGVAVLNADDLLVRAMSARTKARTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTGCSD 276 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYV 360 L GE V NAL AA + +G+ + + L R E + Sbjct: 277 VTLRLYGEHHVSNALAAAAVAHVLGMPAEEIATALSGAGTLSRWRMEVTEREDGVTIVND 336 Query: 361 DYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411 Y S+ L+ + + GR V G GD + +G++A+ L + Sbjct: 337 AYNANPESMRAALRALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVRL-N 395 Query: 412 IAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 ++ + R ++ A E G + + A+ L DV++V Sbjct: 396 VSRLVAVGGREASWLQLGAYNEGSWGEESVL-VSDAQAAVDLLRSELRPGDVVLV 449 >gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Psychroflexus torquis ATCC 700755] Length = 427 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 32/361 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + +D+R I++ +F A+ G+ DG+L+ QA+ +GA V+ + D Sbjct: 15 SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK------- 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V N L A + I+A+TG++GK++ V ++ + G Sbjct: 68 --ILVKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGNL 125 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + T + L + Q + + G T Sbjct: 126 NNHIGVPLTLLSFTAE-LDLGIIEIGANHQKEIESLCKIAE------------PNYGYIT 172 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ + K L++ L+ + DD V Sbjct: 173 NFGKAHLEGFGGVEGVIKGKSELYDYLIHHDGLIFFNRDDD---------IQVKKAVNYK 223 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 Y L + +E L GE+ N A G+ G+ Sbjct: 224 NYSIGEKPLSDCRVTFMDANPFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKD 283 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E +E R + + N + Y S++ L++ + ++S V+ G Sbjct: 284 EIKEAIENFEAEEMRSQVIEKNDLK-ILLDAYNANPTSMKAALESFKKMSSQSQTVILGD 342 Query: 391 G 391 Sbjct: 343 M 343 >gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] Length = 430 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 135/396 (34%), Gaps = 39/396 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +D+R+I+ +F A+ G +G+ F +A+ QGA +VV +++ Sbjct: 14 SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKE------- 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V N + L A ILA+TG++GK++ V + R + G Sbjct: 67 HYILVQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNL 126 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 + P+ L V + A+ H L+ L I G Sbjct: 127 NNH----------IGVPLTLLSMDD---HTEFGIVEMGAN-HPLEIEFLCTIANPDYGYI 172 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ + + AK L++ L + + DD + Sbjct: 173 TNFGKAHLEGFGSLEGVVKAKTELYKNLQERHKLIFLNIDDE---------VQRKHENYN 223 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + V + + + DF L GE+ N A + + + Sbjct: 224 HTFSFGESNEADVQLSYQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKF 283 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVF 388 + L R + + + I Y S+ L+N + + + + I + Sbjct: 284 EEIQTALSNYSPDNNRSQTL-NTASNTIIMDAYNANPTSMHAALENFKQLKTNKQKIAIL 342 Query: 389 GCG---GDRDQGKRPIMGKIALDLADIA--IVTDDN 419 G G + I+ +D A + DN Sbjct: 343 GDMFELGSSAVTEHQIIANYV-QNSDFAETYLLGDN 377 >gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] Length = 486 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 150/450 (33%), Gaps = 37/450 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V DSR ++ G +FVA+ G DGH FI + A + Sbjct: 44 SGVEMDSRDVRPGDVFVALKGEAMDGHKFIA-----------AAFAKGAVAAITDRPVDF 92 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P ++V +T K L A + +AVTG+ GK+ V + R+ Sbjct: 93 PHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASLDRA--------SR 144 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + + G D ++ T Sbjct: 145 GAAHRSVRSYNNHVGVPLSLARMPARAK---FGVFEMGMNHAGEIAPLSDHVRPHVALIT 201 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 + HI+ + +A + K ++F + + ++ A +A Sbjct: 202 TIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAKALGVNVVTFG 261 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 L + + VT + + PGE + N+L A G D Sbjct: 262 RSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAGGDL 321 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIV 386 A L ++ + GR + GG+ + Y S+ L+ + + R + Sbjct: 322 ASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAHRRVA 381 Query: 387 VFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGFI 440 V G GD + + + D I+ D R+ E R A + P F Sbjct: 382 VLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELGRMPANSLGFAPSFA 441 Query: 441 EKGNRIEAIRTAIEM--LNKQDVLVVAGKG 468 + + EAI A+E L D ++V KG Sbjct: 442 QCDSPAEAI-AALEEYGLTHGDAVLV--KG 468 >gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] Length = 511 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 77/509 (15%), Positives = 154/509 (30%), Gaps = 66/509 (12%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V DSR + G +F+A+ G + DGH F + Sbjct: 1 MIALTLQEIADITGGRLDCVPDPAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAEK 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN-------TRKFLSLFASRL 109 A+ GA A++ + + + ++ + LS A + Sbjct: 61 AVESGAVAVLAARPVGVPAIVVEPTGKVEGDGANADIYANDEDGSAAAVIQALSALARAV 120 Query: 110 YGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165 + NI+ VTG++GK+S + I + +G + G + Sbjct: 121 TQRLAAEDGLNIVGVTGSAGKTSTKDLIATIFRAAGETVAPPGSFNNEVGLPY------- 173 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 AL + A G +H G N+G H+ +++ Sbjct: 174 ------TALRCDEHTEYLVAEMSARGIGHIRHLTGITAPKVGVVLNVGTAHLGEFGSREN 227 Query: 226 YFNA--KMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHL 279 A ++ + A++ A+D++ + + + Sbjct: 228 IALAKGELVEALPSAAEGGVAVLNANDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYA 287 Query: 280 KKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHL 336 V + + + G QV NAL AA I +G+ + + Sbjct: 288 TDVQLDDVARASFLMHTPGHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALS 347 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGG 392 R + I Y +S+ + + + R I V G G Sbjct: 348 GHRIASEHRMDVRNRRDGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMG 407 Query: 393 DRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 + R + ++A D + +P + + GI + + EA Sbjct: 408 ELGDDALDAHRQLGAELAKYHVDHLVAVGSSPNTRAMAEAAQA--KGINTSVSV-DVDEA 464 Query: 449 IRTAIEMLNK-------------QDVLVV 464 + +L +DV++V Sbjct: 465 AKIVDSLLRTPPVGVDDWPQRDVKDVVLV 493 >gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2] Length = 466 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] Length = 444 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 76/465 (16%), Positives = 158/465 (33%), Gaps = 47/465 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K+ ++ WR ++ S+D+R + AG +F+A+ G G F+ A + Sbjct: 6 TAKEIATIVGGYLRGNDDWRALEV---STDTRTLTAGQLFIALRGEHFCGEDFLQTAQER 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A++V + P +VV++T L + A+ + I+ +TGT+GK Sbjct: 63 GAVAVIVQE---------YREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGK 113 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +S + +I G + +G + P+ L + + + Sbjct: 114 TSTKEMLYRILSAQGKTLATVGNLN----------NDIGVPLTLLRLQNEHR---FAVIE 160 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + A+ + + + TN+ H+ + AK ++ Sbjct: 161 MGANHPRDIERLVKIVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRFSSGALVV--- 217 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 AD + ++ + + ++ ++ N Q+ T+ + + + L Sbjct: 218 NADLPQAAAWLQEFGHRSIQTFALEQSAQWTAA---DISDNGQRFTLMHLAQRAEIAWQL 274 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G V NAL A G+ A + L+ L + R Y Sbjct: 275 CGRHNVANALAATAAASFAGVSLAQSAQALQGLRLQQSRL-VALHVRHHTLYDDTYNANP 333 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 S + ++ I+T +V+ G G+ + ++A + I Sbjct: 334 ASFKAAIEVIKTAAH--SLVIAGKMGELGAQSAALHAEVAAFAREKGI-------KHFWA 384 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKG 468 + G P + EA+ A+ + + ++V KG Sbjct: 385 LSVPDYAAGFPDARLFEDV-EAVNQALRDILAGEKPYTVLV--KG 426 >gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] Length = 452 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 67/417 (16%), Positives = 138/417 (33%), Gaps = 30/417 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I K E+ N + + +KI+ V DSR + ++V I+G + DGH F Q Sbjct: 1 MIVKTIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQT 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I GA + + + P+++VD+T + + + + ++ VTG+ Sbjct: 61 IEDGALISLWQKDH-------VPYPDFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGS 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S + I + + G +++ + P I + V Sbjct: 114 NGKTSCKDMLYSIFSQEKKTQKTQGN--------RNSEIGLPLTI-----FDFDEDIEVA 160 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + + G + +L I S + + E + Sbjct: 161 ILEMGMENKG-EITQLTSIAQPDISVITSIGSAHMENLGGKLQIAQAKCEILEGTKENGL 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + + +EV+ V+S G G + + + D Sbjct: 220 FLYNYESKEIQEVLCTLDTENKNVVSFGQGGDVSITSDIEYDK--EGIVFKCNILDAPVH 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G+FQ NAL + A + +L L+ L + R + + + + Y Sbjct: 278 LRAFGDFQAMNALPCIYIAKACHLKEESILNGLKNLEMTKMRTQLISVKNA-YILDDTYK 336 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVT 416 S + + + + + + I + G ++ +G A D T Sbjct: 337 SNPESAKAAIDTLMELPANKHIAIISDMLDLGSEEKQLHYDVGVYAKEKGVDELYCT 393 >gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 457 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 158/479 (32%), Gaps = 42/479 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 DL + +++ + + +S DSR +F+AI G DGH F+P+ Sbjct: 2 DLSLLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEV 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +G +++V+ + + N P VV++T + + K ++A+TG+ Sbjct: 62 LNKGVKSVVI-----KKGMQKLLPDNFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ V ++ ++ G + L+ V Sbjct: 117 VGKTTTKEMVGEVLKKLGKIKLSHSNFNNEIGVG-------------LTILAADKEDKVL 163 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + G ++ + TN+G HI ++++ AK + + L PK Sbjct: 164 VLEMGMRGLGQIENLSKHSEPDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVV 223 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDF 302 I D + + + +V + + + K + ++ ++ F Sbjct: 224 IIPANDLLLEETLREYWKGRVIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTF 283 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 G N L A + +GID + + + + + Y Sbjct: 284 KISFEGFHNASNFLFAYAVAKELGIDFESFNKFDFVSLGGRNK---ILKSVKTTIYDESY 340 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + S+ +KN+ + +FG +G+ + +N Sbjct: 341 NASPESVNACIKNLIGKPRNKF-FIFGSMQ--------ELGEESEKYHKEIFNLINNSDI 391 Query: 423 E--------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 E EKI + + F+ N + + + K D +++ KG Sbjct: 392 EKCFFICDKKSEKIYTKYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRCWQ 448 >gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] Length = 463 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A TP L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGTPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 + D+ + + ++ +++ E+ ++ EA+ ++ LN D +++ KG Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439 >gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM 18228] Length = 461 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 129/375 (34%), Gaps = 26/375 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ F QA+ +G VV Q + + I Sbjct: 47 VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQ------KDDPRI 100 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V++ K L A+ + I+ +TGT+GK++ + + R + G + Sbjct: 101 LLVEDCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNN 160 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P + V + AS G ++ G TN+ Sbjct: 161 HIGVPLTLLRLKPE-------------HEIAVVEMGASHPGEIHMLTHIVEPDYGIITNV 207 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G+ H++ + + K L++ K S I ++ Y ++ + G + G Sbjct: 208 GKAHLEGFGSFEGVIRTKGELYDYLRSRKNSSVFIQNENPYLNQIAE-----GLNCIRYG 262 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 V E + L G + + N L AA + G++ Sbjct: 263 QTEGLYVSGHVLKCSPFLAFAWIGEKGLHEVQTHLIGTYNLDNVLAAAAIGRFFGVEEEE 322 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L R + I Y S+ L+N R + + +V+ G Sbjct: 323 ISLALSSYIPQNNRSQLE-ETPNNHLIVDAYNANPTSMMAALENFRHVEAAHKMVILGDM 381 Query: 392 GDRDQGKRPIMGKIA 406 + + KI Sbjct: 382 KELGSSSKEEHAKIV 396 >gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 456 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 86/484 (17%), Positives = 157/484 (32%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K +++ Sbjct: 54 FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVV 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] Length = 469 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + K++ +S D+R +Q G +FVA+ + DGH F+ QA+ +GA A +V + Sbjct: 21 DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALV------THRPDGV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ P+L+V++ + L + ++A+TG+ GK+S + + G + Sbjct: 74 AADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAA 133 Query: 147 IGPTSTIS 154 + + Sbjct: 134 VASYNNHW 141 >gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 486 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 47/410 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + + DSR+I G +F+ + G + DGH Sbjct: 32 MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 84 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P L+V + K + A K +++ Sbjct: 85 FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 134 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G L P Sbjct: 135 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 193 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G HV E + + L G H+++ +++ A+ ++ Sbjct: 194 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 239 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D + G L+ K +T Sbjct: 240 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 292 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + + +++ LE L + R E+ + + + Sbjct: 293 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 352 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIM 402 Y ++ +IL+ I + G+ I + G++ M Sbjct: 353 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQM 402 >gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum rubarum] Length = 495 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 74/427 (17%), Positives = 133/427 (31%), Gaps = 47/427 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + VS+D+R ++ +FVA+ G+ DGH ++ +A +GA A +VS + Sbjct: 25 PALPDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEATG 84 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138 P+L+V +TR L A + K + ++ +TGT+GK++ + + Sbjct: 85 ---------PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135 Query: 139 RSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV------- 187 G + + + L + + Sbjct: 136 AEGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAV-LEVGIRKPGDMDYLSSVLVSDASIV 194 Query: 188 -EASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 L+ ++G+ N R F + + Sbjct: 195 TSVGEGHLETLGSVEGVWKEKSHLLNWVRPGGAIVLPLDLLFRYPASPVFRERQRRFFFV 254 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D G R + G L+K T + F + P Sbjct: 255 ELDPDPG-------DSARGPRSVPEGSTILTGTLRKEEGGKWILSGT--TGPESFSWKMP 305 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 P +AL+A A+G+ HLE +PGR + T + Y Sbjct: 306 SPSSILAMDALLALAAGNALGVSLQEGANHLENFSPLPGRMQEKRTPEGALLLLDHYNSN 365 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-SED 424 SL + + + R GK+ L D+ + +D+PR + Sbjct: 366 PLSLRGAFQWCAEVWKKEATL-----------SRGEPGKLLAVLGDMLELGEDSPRLHRE 414 Query: 425 PEKIRAE 431 +I AE Sbjct: 415 AGRIAAE 421 >gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69] Length = 457 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ + ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLVSQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] Length = 457 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E++ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLSAFQTLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + + K +T Sbjct: 209 MAPGSLLLAPADP----IVEDYLPTDKKVIRFGQGAELEVTDLIE---RKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAISANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 488 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 146/479 (30%), Gaps = 45/479 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + + V +DSR G ++VA G DGH F+ A A Sbjct: 1 MIAFTAAEIADITNGRLDAEPGITPLSVVTDSREATQGSLYVAKPGENADGHDFVGSAFA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116 GA +V D + P ++V + + A+ + Sbjct: 61 AGATLALVEHPVLSPDGTPY-----PSVLVPDAVLAMGKLAAESVRRIRAARAETNDELT 115 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ + I G + G + + P ++ A Sbjct: 116 VIGITGSAGKTTTKDLLAGILSAHGTTVAPKGS--------YNGEIGVPLTVFTAGT--- 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + A+ G + +D +K G +G H + AK L E Sbjct: 165 --DTRYLVIEMGATGIGHISYLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEG 222 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTI 293 L AII DD + R + + G G + + + + + Sbjct: 223 -LAASGTAIINLDDERVAAMQARTSASVLGFTAEGRPGAAVQALNADTNAEGNPEFDLLL 281 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352 L G N L AA A G+ + + R E Sbjct: 282 PGGDTPHHVSSRLIGAHHTGNLLAAAAAAWAAGVSGEDIAAALSSQAAASRWRMERTERA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408 I Y S+ L+ + + GR V G G+ + +G + Sbjct: 342 DGVTIINDAYNANPESMRAALRTLADLGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVR 401 Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 L + + +V E + + G I + EA L D+++ Sbjct: 402 LNISRLVVV-----GREARALYVSAVQEGSWGDECIFAEDAEEAYELLSAELEPGDLVL 455 >gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] Length = 471 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 76/469 (16%), Positives = 136/469 (28%), Gaps = 35/469 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + ++ V DSR G +FVA VG + DGH F Sbjct: 1 MIALSLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A A+ P +VV++ + L A + + ++A+TG Sbjct: 60 ----------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ Q + F G + T +L Sbjct: 110 SAGKTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ + G N+G HI ++ A ++ Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAED 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ ADD + + R ++ + G Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESDEADVRAENVRLTDSGQPSFRLHTPSGASD 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + AA + + E + R E + Sbjct: 277 VTMRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTVVND 336 Query: 361 DYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415 Y S+ L+ + + GR V G GD + +G++A+ L + Sbjct: 337 AYNANPESMRAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVA 396 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S E G + AI L DV++V Sbjct: 397 VGGREASWLQLGAYNEGSWGEESVH-VSDAQAAIDLLRSELRPGDVVLV 444 >gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2 ,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 473 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 150/475 (31%), Gaps = 45/475 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V DSR + G +F A G + DGH + Sbjct: 1 MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A P +VV++ L A + + ++ +TG Sbjct: 60 ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G + T Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAE---------------T 154 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 H+ +E + G+ R G N+G H+ +++A AK L E LP+ Sbjct: 155 EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEV-LPE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + + R ++ A + + Sbjct: 214 DGCAVLNADDPLVRAMASRTRARVLLFGEAPEADVRGEKVRMTADG-RPAFELHTPTGCS 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + E L + R E + Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332 Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ R GR V G GD + +G++A+ L Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 393 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446 >gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 462 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 138/369 (37%), Gaps = 30/369 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + IN +S S I+ IF+A++GN+ DGH F+ QA+ GA+A++V+ Sbjct: 19 GSDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAGAKALLVNR--------- 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P L+V +TR L A + + I+A+TG+SGK+SV I + G Sbjct: 70 YVSLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKEMTASILKECGTVI 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--I 202 I L + G+ VE S+ L + + G + Sbjct: 130 ATQKN----------YNNFIGVSITL-----LKLTYGIDFAVVELGSNKLGELKKLGEIV 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 N+ H+ + K ++F + + A+I D + N Sbjct: 175 GADVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDSYSFVQGNSILLN 234 Query: 263 AGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G V + + T+ P+ G + N L A+ Sbjct: 235 FKKKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNILAAS 294 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378 L A+G + ++ L+K++ +PGR N + D Y S+ + + Sbjct: 295 ALSFAVGASLSNIVHGLQKMNALPGRLFPFILNRGKLCLIDDTYNANIGSMIAAINVLSF 354 Query: 379 ITSGRIIVV 387 + RI+VV Sbjct: 355 MPGYRILVV 363 >gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella silvestris BL2] Length = 498 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 129/396 (32%), Gaps = 30/396 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R + G +F AI G DGH ++ A+ +GA A VV A + R Sbjct: 48 TGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALEKGALAAVVDEA----HAESLARLGP 103 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V D+ L + I AVTG+ GK+S ++ +G + + Sbjct: 104 LYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTSTKEALRLALSAAGRTHASVASY 163 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + G ++ T Sbjct: 164 NNHWGV----------PLTLARMPRQ---TEFGVFEIGMNHQGEITPLTRMVRPHVAIIT 210 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGCRVL 268 + H++ +A +AK +F L AI+ AD+ + + + AG Sbjct: 211 TVAPVHMENFTGVEAIADAKAEIFAG-LEPGGVAILPADNPQFERLAAAAKRSAAGLVTS 269 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + L V + V + G+ + PG N+L A+G+D Sbjct: 270 FGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLAAKALGVD 329 Query: 329 SALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSG 382 + L P R E + I Y S+ + + G Sbjct: 330 PREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGALAPPSPG 389 Query: 383 RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414 R + V G G + + +A + D+ Sbjct: 390 RRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVF 425 >gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria mucosa ATCC 25996] Length = 455 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 76/428 (17%), Positives = 140/428 (32%), Gaps = 40/428 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q P + ++ V +DSR I+AG +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQALNLPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116 + R + L VD+T L A Sbjct: 55 ED------------VLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRDNVNPF 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TG+ GK++V + + +R + ++ P+ L Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + G K A N R H+ + Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L ++ A+I +D ++ + + + + G +H + + + + Sbjct: 213 GLGEDGLALIPCEDEHAVVF--QTTSQDHQQRTFGIDSGDVHAENIVLKPLSCEFDLVCG 270 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+PG V+NA AA L +A G+ V E L+ + GR Sbjct: 271 NERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKGAT 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411 I Y +S++ + + +++ R I V G G+ + + M A + Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMSAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389 Query: 412 IAIVTDDN 419 A DN Sbjct: 390 AAYFVGDN 397 >gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP23-BS72] Length = 457 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D ++ ++ G+ L+ + K +T Sbjct: 209 MASGSLLLMPADPIVEDYLQTDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 449 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 63/391 (16%), Positives = 122/391 (31%), Gaps = 37/391 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E + V DSR I+ +FV + G + DGH F QA GA A + S + Sbjct: 18 NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIQ 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V +T K A K I+A+TG++GK++ V + + + Sbjct: 71 PPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTYK 130 Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + T + + + +A++ L Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +++ + ++ P D + + + Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLLDPFVPNLTQTIE 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + + T+ P+ G + V NAL+A GL Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGL 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380 G+ + + E L + R ++V + + Y ++ ++L + R + Sbjct: 286 GRHFGVSNEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 GR I V + + ++A L D Sbjct: 346 EGRRIAVLADMLELGPDSAQMHEQMAAHLDD 376 >gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 463 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A S P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------SGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 + D+ + + ++ +++ E+ ++ EA+ ++ LN D +++ KG Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439 >gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS] gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS6180] gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS5005] Length = 463 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 73/480 (15%), Positives = 155/480 (32%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 + D+ + + ++ +++ E+ ++ EA+ ++ LN D +++ KG Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439 >gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB900] Length = 466 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ +L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398 >gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] Length = 454 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 155/401 (38%), Gaps = 33/401 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + K+N V++D+R I+ G +F A+ G + D H F+ A GA A +V D Sbjct: 15 LHGDDLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFDN 74 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 ++ V ++RK L A + LAVTG +GK++V + Sbjct: 75 ---------VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLGE--- 122 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G +T +F D + P+ L + + + + A++ G Sbjct: 123 -----GTLATNGNFNNDVGV----PLTLLRLRAEHR---YAVIELGANAPGEIAWTSSLT 170 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN+ H++ + Q +AK +F AI+ DD+++ ++A Sbjct: 171 RPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCTQGGQ-AIVNNDDSFADFFAEKARA 229 Query: 263 AG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG RV L + ++ ++ L PLPG QV NAL+A Sbjct: 230 AGLTVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMAC 289 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A+G VL L L VPGR G + Y S+ + + Sbjct: 290 AAVRALGASLPQVLPRLAALKPVPGRMHIQSAG-TGTVVDDTYNANPGSVRAAIDWLAAQ 348 Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD--LADIAIVT 416 + +++V+ G G + +G+ A +A + ++T Sbjct: 349 PAPQMLVLGEMGELGPQADSLVEALGEYAQQAGIAGLVVMT 389 >gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] Length = 452 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 155/479 (32%), Gaps = 53/479 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ ++ + + + + IN + DSR I+ G +F+ + G + DGH FI Sbjct: 1 MKLT---LQEIASVVGAQNDVSL-FEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A I S+ P ++V + K A K +++AV Sbjct: 56 DTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVIAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + G P + Sbjct: 107 TGSNGKTTTKDMIATILATTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEKI 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + L L + + L + + + + Sbjct: 157 VLEMGQDHLGDIAL----LSNLTHPHIAVVTLIGEAHLEFFGSREKIAEGKMQITQGMDG 212 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I AD + + ++ G + +K + D Sbjct: 213 HGILIAPADKIINSFLPEKQKVI--------RFGADEDIFVTELEEHKNYLNFKTNFLDN 264 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ G++ NA++A+ + + + ++ L +L++ R E+ + + Sbjct: 265 EIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEWKKAANGADILSD 324 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++++IL+ +I G+ I V + + + + L D A++ Sbjct: 325 VYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASL-DPAVIDR 383 Query: 418 DNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + E+ + E I+ + D +++ KG Sbjct: 384 IFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQIQKVL---GPNDQILL--KG 437 >gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas naphthalenivorans CJ2] gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 466 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 67/378 (17%), Positives = 128/378 (33%), Gaps = 23/378 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R +Q G +FVA+ G D H F+PQA AQGA A + + P Sbjct: 27 VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQHGL--------REAGLPG 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A+ + ++AVTG++GK++V + I + + + Sbjct: 79 LEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILRAWKPDAALATEGNL 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P+ L +S V + + + G + + N Sbjct: 139 NNDIGV--------PLTLL---RLRASHQVGVIELGMNHPGEIAYLAHLARPSVALVNNA 187 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H+++ T +A L + A+ ADD Y+ + A ++ Sbjct: 188 QREHLEFMATVEAVAQENG-SVLASLDADGIAVFPADDVYTAVWRRLAGERQVLTFALAA 246 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + +F + A A+ L + + Sbjct: 247 PADVTASARWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATASALAAGVPLSFIAA 306 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389 R V R + D Y +S++ ++ + + R++V+ Sbjct: 307 GLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLAELPGPRLLVMGDMA 366 Query: 390 CGGDRDQGKRPIMGKIAL 407 G + G+ A Sbjct: 367 EVGSQGPQFHDEAGRNAA 384 >gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315] gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1] Length = 455 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 67/426 (15%), Positives = 133/426 (31%), Gaps = 44/426 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + +GH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMD 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +I D+ + G L K +T + Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++E LE + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + ++ L+ D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383 Query: 414 IVTDDN 419 + D+ Sbjct: 384 VFYGDD 389 >gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316] gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316] gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] Length = 455 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + + DSR+I G +F+ + G + DGH Sbjct: 1 MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P L+V + K + A K +++ Sbjct: 54 FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G L P Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIILEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G HV E + + L G H+++ +++ A+ ++ Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D + G L+ K +T Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + + +++ LE L + R E+ + + + Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393 Y ++ +IL+ I + G+ I + + Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359 >gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] Length = 455 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 47/410 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + + DSR+I G +F+ + G + DGH Sbjct: 1 MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P L+V + K + A K +++ Sbjct: 54 FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G L P Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G HV E + + L G H+++ +++ A+ ++ Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D + G L+ K +T Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + + +++ LE L + R E+ + + + Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIM 402 Y ++ +IL+ I + G+ I + G++ M Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQM 371 >gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 463 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A S P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------SGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 + D+ + + ++ +++ E+ ++ EA+ ++ LN D +++ KG Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439 >gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] Length = 427 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 76/435 (17%), Positives = 143/435 (32%), Gaps = 59/435 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++ DSR + G FVA+ G + G+ FI A+A+GA ++ + Sbjct: 28 RDLVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA---------- 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V + + L L + P ++ VTG+ GK++ + Q Sbjct: 78 --VQVQDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQG-------------- 121 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ A + L TP + L V + G Q + + G T Sbjct: 122 --LAWPAPEGNLNTPPAL-ARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLT 178 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H++ + + A+ + + A A + + V + Sbjct: 179 AIAPAHLEALGSLEVV--AREKSQLLQASRVRIASTQA----------ARYLSLPEVRTY 226 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G++ + + + P PG AL A + +G D Sbjct: 227 GFEEGTFQGRDLTITPEGTRFR----YGQRTLHLPYPGYGPALGALAALAVAEVLGQDLD 282 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 V +HLE L + PGR V I+ Y S+ L+++ GR IVV G Sbjct: 283 QVCQHLEALRLPPGRMHLVRRGGV-LFIHDAYNANPASVRAGLESLDRF-PGRKIVVLGT 340 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 G + + ++A +A A+ + ++ G + + Sbjct: 341 MKELGPQAEAYHLEAARLAARVAQRAVFVGEY---------APQMARLFEGALAVTDAET 391 Query: 448 AIRTAIEMLNKQDVL 462 A + + DV+ Sbjct: 392 ARQALKAQVRPGDVI 406 >gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. CC9902] gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9902] Length = 449 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 88/457 (19%), Positives = 153/457 (33%), Gaps = 38/457 (8%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 + P + + + +DSR +Q G FV +VG DGH F+ Q A GA+A VV + Sbjct: 13 GAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAAVVEQS 72 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 +S + S+ VD+T K A + ++AVTG++GK++ ++ Sbjct: 73 WSDP-----LPSDLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRAA 127 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G G + LT S + + G + Sbjct: 128 LAPLGDVHCSEGNNN----NDIGVPLTVLSADSHHC---------ALVIEMGMRGPGEIE 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + TN+G HI +++A A L + +I A DA + Sbjct: 175 RLSRCTEPDVAVITNIGTAHIGRLGSREAIA-AAKCEITAALKSDGVVVIPAGDALLETA 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + + + + V A +E PL G N L Sbjct: 234 LSKVWSGRVVRVRLADDTP------VAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVL 287 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A + +G+DSA + + R G + Y + ++ L + Sbjct: 288 LALAVADQLGVDSASLNAMEVSVPGGRNRRLVQGGLTLLDET---YNASPEAVMAAL-TL 343 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEI 432 + GR V G + + +A A D +V D A Sbjct: 344 LSSQPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRA----MANA 399 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 G+P + +A + E L DV+++ A +G Sbjct: 400 AAGLPRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRG 436 >gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] Length = 455 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + + DSR+I G +F+ + G + DGH Sbjct: 1 MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P L+V + K + A K +++ Sbjct: 54 FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G L P Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G HV E + + L G H+++ +++ A+ ++ Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D + G L+ K +T Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + + +++ LE L + R E+ + + + Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393 Y ++ +IL+ I + G+ I + + Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359 >gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1087-00] Length = 457 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 160/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALYLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus denitrificans PD1222] gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paracoccus denitrificans PD1222] Length = 461 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 86/454 (18%), Positives = 149/454 (32%), Gaps = 49/454 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ + VS D+R I+ G +FVA+ + DGH F+ +A+ +GA A +VS Sbjct: 19 RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEKGACAALVSR------IPEG 71 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + P+LVV + L + ++A+TG+ GK+S + G Sbjct: 72 VAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTSTKEMARVALAGQGRVHA 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + P+ LA+ V +H + L + Sbjct: 132 AEASYNNHWGV----------PLTLARMPEDTDFAIVEIGM----NHPGEIEPLARLARP 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + + L + AII D ++ + A +A Sbjct: 178 HVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDAAA 237 Query: 266 RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V+ G QG LK + + + E DF ++AA Sbjct: 238 IVIGFGQQGMARPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLAALSAAG 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 + A + + G E + G R+ D Y SL L + +T GR Sbjct: 298 ADVAEAAKHLSDWRPPLGRGAVE----DLDGIRLIDDAYNSNPTSLSAGLATLARLTGGR 353 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIE 441 + + G + + + +A D A A+ V PR + + G+ Sbjct: 354 RVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQGRRGMHA--- 410 Query: 442 KGNRIEAIRTAIEMLNK-------QDVLVVAGKG 468 TA E+ K D+++V KG Sbjct: 411 --------ETAAELAGKVGELVASGDIVLV--KG 434 >gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter gallaeciensis BS107] gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 470 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 7/128 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ +S D+R I AG +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L+VD+ + L + ++AVTG+ GK+S + ++ G + Sbjct: 73 GDDAPLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132 Query: 147 IGPTSTIS 154 + + Sbjct: 133 VASYNNHW 140 >gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 139/416 (33%), Gaps = 38/416 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + + VS+DSR I G +FVA+ G + DGH ++ Sbjct: 5 MTFSELVIHLDARLVGG---------DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q +GA +V ++ P LVV +TRK L+ + + + A Sbjct: 56 EQVAGKGAVGALVEHEVE--------GASLPQLVVLDTRKALAQLGAMNRNAFVDKPVAA 107 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++V + I + G G + P Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + AS G + K TN G H+ A E L Sbjct: 155 HDAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 A++ DD RA ++ +H + ++ Sbjct: 214 ATGTAVLNLDDKAFPIWQLRAGERKVMTFALNNPAADLHATDLRRDARGCPAFMLNSPLG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G V NAL AA A+G+ + L + V GR ++ I Sbjct: 274 AAPVQLNLLGTHNVANALAAAAAACALGVSLEGIAAGLNNVQPVKGRAVAQIASNGVRVI 333 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410 Y S+ + + SGR ++V G G+ +QG R + A ++ Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388 >gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] Length = 459 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 146/381 (38%), Gaps = 27/381 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R +QAG +FVA+ G + D H F+ QA AQGA A + + + P Sbjct: 27 VHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQGAVAAIAHHGLAA--------AGLPG 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +++ L A+ + ++AVTG++GK++V + I + + Sbjct: 79 LEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVTQMIAAILRAWKST--------Q 130 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + P+ L + + + V V + + G + K N Sbjct: 131 AFATEGNLNNDIGVPLTLLRLRASHA---VGVVELGMNHPGEIAYLAALAKPGVALVNNA 187 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 R+H+++ T +A + L + A+ ADD Y+ R RVL+ Sbjct: 188 QREHLEFMATVEAVARENG-SVLQALGTDGIAVFPADDDYTAIW--RGLAGARRVLTFAQ 244 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G + + QV DF + G V NAL A +A G+ ++ Sbjct: 245 TGPADVTAQAQWSGDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATACALAAGVPLPVI 304 Query: 333 LEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 L + V GR N I Y +S+ ++ + + + R++V+ Sbjct: 305 AAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLAELPAPRLLVMGD 364 Query: 390 CGGDRDQGKRPIMGKIALDLA 410 G DQG P + A A Sbjct: 365 MGEVGDQG--PQFHEEAGRYA 383 >gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium NOR5-3] Length = 459 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 95/450 (21%), Positives = 163/450 (36%), Gaps = 39/450 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + V+ DSR + G +F+A+ G + DGH F+ AIA+GA A +V + Sbjct: 20 GASLQFSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVERPVQV----- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P L V N LS ++A+TG+ GK++V + + I +G + Sbjct: 75 ----SIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCRSIFSEAGSTV 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G P+ LA+ V + A+ G H + Sbjct: 131 ATAGN----------YNNEIGVPLTLARLQDDTR---YAIVEMGATKRGDIAHLCTLARP 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + N H++ + + K +++ L AI+ D + R AG Sbjct: 178 SITTVLNAMEAHLEGFGSVADVADIKAEIYDG-LGSSGAAIVNLDQPWVPLWRDRIAQAG 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + LS L + T+ + G+ +PLPG V NAL AA L Sbjct: 237 AQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHSVANALAAAAL 296 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 IA G+ ++ LE PGR + + I Y S+ + + T+ Sbjct: 297 AIAAGLSLDQIVVGLEHAQAEPGRLQSERLGNDKTLIDDSYNANPGSVRAAITLLAA-TA 355 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G +++ G G + MG+ LA ++ +T E +R + Sbjct: 356 GESLLILGEMLELGAESPERHAEMGE----LARLSGITRFVGVGE---AVRPAVEAFGAN 408 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +R ++L D ++V KG Sbjct: 409 GQWFASREALTPKLADLLGASDTILV--KG 436 >gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] Length = 430 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ ++ + + + DSR+I G +F+ + G + DGH Sbjct: 1 MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A + P L+V + K + A K +++ Sbjct: 54 FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + I + + G L P Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIILEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G HV E + + L G H+++ +++ A+ ++ Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 +I D + G L+ K +T Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+PG++ NA+VAA + + + +++ LE L + R E+ + + + Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393 Y ++ +IL+ I + G+ I + + Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359 >gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 130/369 (35%), Gaps = 28/369 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ L I ++ KI VS DSR I+ +++ IVG K DG +FI + Sbjct: 1 MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G+ A ++ +F N P ++VD+T+K L A K I+A+TG+ Sbjct: 61 QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + + G + + + Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSED-------------TDIG 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + G + + TN+G H+ +T++ AK+ E L + Sbjct: 163 VVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKL-EILEGLKDDGI 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD ++K+ + G + + + KD ++ Sbjct: 222 FLYNGDDE----ILKKVLPSYDIKQKTISFGMGDKVDFKVEAREYTSTSTNFSYKDENYS 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 PL G QVYN +A + + + L K R E G I D Y Sbjct: 278 VPLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNEL--IERDGFDILDDAY 335 Query: 363 AHTSNSLEM 371 SL+ Sbjct: 336 KSNPQSLKQ 344 >gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] Length = 496 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 80/489 (16%), Positives = 148/489 (30%), Gaps = 47/489 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERK-INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + I V DSR + +G +FVA+ G K DGH + A Sbjct: 1 MITLRLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAATA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPIL----------VVDNTRKFLSLFASRLYGKH 113 + QGA ++ + + + V + ++ A + K Sbjct: 61 MDQGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKLARHVVDKL 120 Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 ++ +TG++GK+S V I + +G + G + T Sbjct: 121 SARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCT------ 174 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + + A S G H G N+G H+ ++ AK Sbjct: 175 -------ETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAK 227 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 L E LP + A++ ADD Y + R ++ + ++ Sbjct: 228 GELVEA-LPADGIAVLNADDDYVAAMADRTSATVWSFSTLHKPVRVAATDIRLDNLSRPT 286 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA------LVLEHLEKLHVVPG 344 T+ VA L A +A + Sbjct: 287 FTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAH 346 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCG----GDRD 395 R + + I Y S+ L+ + + R I V G D Sbjct: 347 RMDVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDAT 406 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 +M +A D+ +V + E+ + I + +A +++ Sbjct: 407 ADHVELMRTVAEQGIDLVVVVGTD---ENARAMINAAAAMGLRAIPTADTTQAATEVLKV 463 Query: 456 LNKQDVLVV 464 L + DV++V Sbjct: 464 LGRGDVILV 472 >gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 456 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 157/481 (32%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIINEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ + + +L + R E+ + + Sbjct: 262 EERIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467 TD +D E + EI G + K + E ++ A+ L D +++ K Sbjct: 381 TDLFLYGQDIEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQVLL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] Length = 468 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 30/382 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+ I + +DSR +AG F+A+ G + D H F+ Q + +G + +V L Sbjct: 33 PEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNKGCQVAIVERPLDL------ 86 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + LVV +TR+ L + ++P+ ++A+TG+SGK++ + I R + Sbjct: 87 ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + T + + AS G + ++ Sbjct: 144 VTRGNLNNDLGVPMMLLELTAE-------------HQYAVMELGASHQGEIDYTSQLVQP 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+G H+ ++ AK ++ + + I ADD H Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTD----AIRHAVQ 246 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + +G I+ ++ + Q + + P G V NA A +A Sbjct: 247 TTQVLSFGEGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 IGI ++ LE GR F+ I Y S+ + + + ++ Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQH-LFIDDTYNANPTSMRAAGEVLAQQSGIKV 365 Query: 385 IVV--FGCGGDRDQGKRPIMGK 404 +V G GD + +G+ Sbjct: 366 MVTGDIGELGDAAAVEHYRLGR 387 >gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis SK321] Length = 457 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 79/485 (16%), Positives = 161/485 (33%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL+ E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKLR------IHEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D ++ + V G+ L+ + K +T Sbjct: 209 MSSNSLLLAPADPVVEDYL-------PTDKKVVRFGQGAELEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 NQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNR---IEAIRTAIEMLNKQDVLV 463 I ED ++ P F + +R + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDRDQFEDLVKQVKESLGTNDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase protein [Xanthomonas albilineans] Length = 501 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 19/367 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + I+ +S D+R + AG ++VA+ G + DGH F A +GA A++V + Sbjct: 17 LHGDDVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLPQIE- 75 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P +VV +T+ L+ A+ + + A+TG++GK+SV + + I Q Sbjct: 76 -------LPQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALLLAILQ---Y 125 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + + +N + P + A + + + A G + D Sbjct: 126 ACRLDGGSVYANPGNHNNEIGLPLAVIAAPDDADYAI-----YEMGAGKPGDIAYLTDIA 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 N+ H++ + K ++ LP + A+I DDA+ ++ Sbjct: 181 PPRVSLVNNIAPAHLERMGSLLGVAQTKGAIYAA-LPADGTAVINIDDAFGLWFEQQLSA 239 Query: 263 AGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A G + ++ ++ + + + PLPG + NAL AA Sbjct: 240 ASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHNLLNALAAAA 299 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L +A+ + A + L ++ VPGR I Y SL + + I Sbjct: 300 LALALDVAPARIAAGLAQVQPVPGRQISHTLPGGAVLIDDSYNANPGSLAAAIDALAAIG 359 Query: 381 SGRIIVV 387 R +V+ Sbjct: 360 GERWLVL 366 >gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] Length = 449 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 70/450 (15%), Positives = 143/450 (31%), Gaps = 41/450 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E + V DSR I+ +FV + G + DGH F QA GA A + S + Sbjct: 18 NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIE 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ V +T K A K I+ +TG++GK++ V+ + + + Sbjct: 71 PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130 Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + T + + + +A++ L Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +++ + ++ PA + + + + Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLTQTIE 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + + T+ P+ G + V NAL+A G+ Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380 G+ + E L + R ++V + + Y ++ ++L + R + Sbjct: 286 GRHFGVADEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +GR I V + + ++A L D + +++ + Sbjct: 346 AGRRIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFLYGKEMQALQKRLANTALADKVR 405 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + I + IE L D LV+ KG Sbjct: 406 YFAIDEKPQLIASLIETLEPSDSLVI--KG 433 >gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] Length = 470 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 136/375 (36%), Gaps = 24/375 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ IN+VS+D+R +F+A+ G + D H FI QA+AQGA A++ Q Sbjct: 23 PQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPLDEQ----- 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 TP ++V++TR L L + + + +A+TG++GK++V + I + Sbjct: 78 ----TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAIIGQQYNVLA 133 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + P+ L + V + A+ G + + Sbjct: 134 TAGNFN----------NDIGVPLTLL---RLEAQHQYAVVELGANHAGEIAYTTSLTRPD 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+ H++ + A + LP++ AI + Y Sbjct: 181 VAILNNVSAAHVEGFGSVHGVAKA-KTEIFQGLPEDGLAITPYESEYLPCWRNVRAGKRL 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + Q + + +S+ + + L G V NAL A+ + + Sbjct: 240 QTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAALEV 299 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + + L + V GR + I Y + S + L + + G I Sbjct: 300 GMSAEEIATGLANVAPVKGRLTPMQLTENVTVIDDTYNASVASTKAALDLLGSY-QGTTI 358 Query: 386 VVFGCGGDRDQGKRP 400 +V G + R Sbjct: 359 MVLGDMAELGAEARA 373 >gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 77/447 (17%), Positives = 152/447 (34%), Gaps = 43/447 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+ + GN+ DGH ++ AI +GA A++VS + D Sbjct: 23 NEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEINDKDK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++VD+ + L A +A+TG+ GK+S ++ + Q L G Sbjct: 76 -IILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQYDSLVFASRGNF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + L S + + G + + +K T Sbjct: 135 NNRLGL-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+ H+++ + + A E K A+I AD +++ N + Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFENFSKNDIAVINADINCYNKIVSILKNLSINRVYN 240 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + V + +QV + K + P N + +G D Sbjct: 241 FGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLIIDILGKD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + HL + GR E + I Y + S++ L+ ++ + + + Sbjct: 301 IEIAANHLANIPPNKGRGEII-NIQNSRIICDYYNASPQSMKAALEYLKQVPAENKTAII 359 Query: 389 GCGGD-RDQGKR---PIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIE 441 G + + KR ++ I + N + P KI + E Sbjct: 360 GDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPPKI---VKKYFKNVDE 416 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I ++ +++++ KG Sbjct: 417 L------ITHITDLFESNELILI--KG 435 >gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] Length = 474 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 143/474 (30%), Gaps = 40/474 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + +I+ V DSR ++AG +F A G DGH + Sbjct: 1 MIALSLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A A P +VV + K L A + + +++A+TG Sbjct: 60 ----------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ Q + + G + T Sbjct: 110 SAGKTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAE-------------TRH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKE 241 + + A G + G N+G HI ++ AK L E + Sbjct: 157 LVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEAD 216 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D M A + + + T+ D Sbjct: 217 GGVAVLNADDLLVRAMSARTKARTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTGCSD 276 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L GE V NAL AA + +G+ + + R E + Sbjct: 277 VTLRLYGEHHVSNALAAAAVAHVLGMSAMEIATALSGAGTLSRWRMEVTERADGVTIVND 336 Query: 361 DYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-A 410 Y S+ L+ + + T GR V G GD + +G++A+ L Sbjct: 337 AYNANPESMRAALRALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNV 396 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + + A+ L DV++V Sbjct: 397 SKLVAVGGREASWLQLGAYNEGSWGEESVL-VSDAQAAVDLLRSELRPGDVVLV 449 >gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] Length = 487 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 89/462 (19%), Positives = 155/462 (33%), Gaps = 52/462 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------SSAYSLQD 81 R + S D+R ++ G +F AI G DGH F+ A+ +GA A VV Sbjct: 25 RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAAVVAEVRAKEFEGVGPV 84 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + P+L + + L L A G I+AVTG+ GK+ ++ + G Sbjct: 85 LAVPGEGDDPVL---DAMRRLGLAARARTG---AAIIAVTGSVGKTGTKEALRHVLSAQG 138 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + + + P+ L + + Sbjct: 139 ATHASVASYNNHWGV----------PLTL---TRMPEDTRFGVFEIGMNHGAEILPLTAM 185 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ T + HI++ ++ A +AK +F L A+I D+ + ++ A Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAHAQ 244 Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG + ++ + ++ + V +V G + PG N+L Sbjct: 245 ASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLGVL 304 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNI 376 A+G D A L L GR E G VD Y S+ L + Sbjct: 305 ACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALATL 364 Query: 377 RTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 I GR I V G + + R + +A + D+ + Sbjct: 365 AGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---------AVGPLM 415 Query: 430 AEIIHGIPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468 A + +P + E + A+ L D ++V KG Sbjct: 416 AHLFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMV--KG 455 >gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 476 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 150/461 (32%), Gaps = 55/461 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R +QAG +FVA+ + DGH F+ QA+ +GA A +VS + + Sbjct: 24 TGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDKGAAAALVS------HVPPGVPEDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V++ + L + ++AVTG+ GK+S + + G + + Sbjct: 77 PLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLLAMLSDQGRAHASVASY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + +H + L + + Sbjct: 137 NNHWGV----------PLTLARMPRDTEFAVIEIGM----NHPGEIAPLAKMAAPHVALI 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + E + AI+ AD S +M +A + R ++ Sbjct: 183 TTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCRLRDITF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G G L + + V + + PG NAL A + A+ D A Sbjct: 243 GEHGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVMAALRTDVA 302 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-------YVDYAHTSNSLEMILKN-------- 375 L L L + GR + Y S+ L+ Sbjct: 303 LALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAEVTN 362 Query: 376 -IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I ++ GR I G + + + +A A I D ++ Sbjct: 363 DIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEI---------DVIHCIGPVMR 413 Query: 435 GIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468 + + + R EA ++ DV++ KG Sbjct: 414 ALYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVL--AKG 452 >gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Zunongwangia profunda SM-A87] Length = 430 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS+D+R+I+ +F A+ G +G+ F +A+ +GAE +V +D Sbjct: 14 SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN------ 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V++ L A+ +LA+TG++GK++ + + + + G Sbjct: 68 -YIFVEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNL 126 Query: 151 STI 153 + Sbjct: 127 NNH 129 >gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 38/480 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +++++ +L+ + + V +DSR + G +FV + G K D H F+ Sbjct: 3 MTVREIVAACGGKLL-------CGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A + ++ A + VD+T+ L A+ + ++ + Sbjct: 56 HAAFASGAAAALTQEHMRMEAEEA-------WIAVDSTQLALQQIAAAYRQRFSIPVVGI 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ G ++++ P + Sbjct: 109 TGSAGKTTTKEMTALALSAGYKVMKTGGN--------HNSQIGLP-----LMMFQFSWEH 155 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + S G + RL + + TNLG HI +TQ K+ + + Sbjct: 156 EAAVVEMGISDFG-EMARLAQVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFT- 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S + DD + + + + V + ++ + Sbjct: 214 QGSVLFLNGDDPMLAGLRGKTGYETVFYGRLPWCDFRAEGITVQEETTAFRC-LAPGSES 272 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + P+ G V +AL A + +G+ L + R + N I Sbjct: 273 VEVTLPVLGMHHVLDALAALAVAERLGVPLKRAAAALRDYRPLAMRQQIYHVNEV-AVID 331 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + + + L + +GR + V G+ + +G A + ++T Sbjct: 332 DSYNSSPGAAKSSLSVLAGFRAGRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLT 391 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + + GI N +A L+ D ++V G +G T IV Sbjct: 392 VGQEAK-AVAEGARSVRAGID-CRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIV 449 >gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 457 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 75/433 (17%), Positives = 135/433 (31%), Gaps = 45/433 (10%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ DSR I+AG +F+ + G + DGH Sbjct: 1 MKL------DLYEIAEVLAAKNDVSQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A QGA A + + P ++VD+ A K ++L Sbjct: 54 FIATAFDQGATATLSERPVAEG----------PYVLVDDVLAAFQALAQYYLEKTGVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + AK ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSEIAKPKTGIVTLVGEAHLEFFGSRTEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ ++ D + + G + K +T Sbjct: 209 MKKGGLLLVPADKIVNDFLPDQQKVV-------RFGPDADICLTRLEERKDSLTFEANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + +L + R E+ + + Sbjct: 262 EQAIDLPVTGKYNATNAMIASYVALQEGVSESAIRQAFAQLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ I GR V + + + G + L I Sbjct: 322 SDVYNANPTAMRLILETFSAIPASQGGRKAAVLADMKELGADSKLMHGAMITSLNPEVI- 380 Query: 416 TDDNPRSEDPEKI 428 TD ED E + Sbjct: 381 TDLFLYGEDMEAL 393 >gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] Length = 429 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 70/393 (17%), Positives = 135/393 (34%), Gaps = 49/393 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ DL+ FPE I +V DSR ++ G +F AI G G+ + Sbjct: 1 MKIIDLLRDYFPE--------KKILESMDIKDVCMDSREVKKGSLFFAIKG----GNNHV 48 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI GA ++ + + + ++T F+ A + ++A+ Sbjct: 49 EEAIKNGAVLVIYDRK-------DLLIQDENTIFTEDTVNFMQKLARDYRKSNQTKVVAI 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + G + P Sbjct: 102 TGSNGKTTTKDIIYSVLSQRFRTKKTQGNHNNHIGLPYTILNAQPE-------------D 148 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + + S G G TN+G H++Y + ++ F AK L E + K Sbjct: 149 EVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKNKENVFKAKGELLEYVHSK 208 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +K H ++ K Sbjct: 209 NTIVFG------DDYYLKDIHGIKVGYGDENTFKISEFIENDKGAEFKLAGK-------- 254 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ GE V NA A L + +G+ + + + L+ + + P RF+ + + I Sbjct: 255 TYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVELTPMRFQKI-EKGKKLYIND 313 Query: 361 DYAHTSNSLEMILKNIRTITSGR--IIVVFGCG 391 Y S+++ ++ + + R I+V G Sbjct: 314 AYNANPTSMKLAIETFDKLYNKRACKIIVLGDM 346 >gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii SDF] gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii] Length = 466 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 139/395 (35%), Gaps = 31/395 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L + ++ + ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + L P L + + A+ G + + Sbjct: 142 TLINRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H+ + AK ++ +LP+ + DD + Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + G + ++ + + P GE V NA A Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ +++ LE+ GR F+ I Y S+ + + Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414 +++V+ G GD + +G+ L D + Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIV 398 >gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica OSU18] gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis subsp. holarctica OSU18] gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 452 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FV IV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385 >gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK353] Length = 456 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 90/484 (18%), Positives = 160/484 (33%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSDRPVAEGA----------YILVDDVLAAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ ++ + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVAEAAITQSFSELELTRNRTEWKKASNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI S GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp. novicida GA99-3549] gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549] Length = 453 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FVAIV DGH FIP AIA A+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANRAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + N V I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385 >gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] Length = 471 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 78/402 (19%), Positives = 147/402 (36%), Gaps = 35/402 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ + + + ++ ++ D+R + AG +++A+ G + DGH F A+A+GA A++V Sbjct: 8 LLAHWAGGELHGPDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + P L+V+++ L+ A+ + ++A+TG++GK+SV + V Sbjct: 68 ER---------LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALV 118 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + Q++G + G ++N + P + A + + + A G Sbjct: 119 LSVLQQAGQAYANPGN--------RNNEIGLPLAVIDAPEDADFAI-----YEMGAGKPG 165 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 D L I S N LP A++ ADDA+ Sbjct: 166 -DIAYLTDIARPDVSLVNNIAAAHLERMGDLLGVATTKGAIYAALPAGGTAVVNADDAFG 224 Query: 254 KEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + G + + V A + + + LPG Sbjct: 225 AWFEQEVVRPAGTGRQLLRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGR 284 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V NAL AA + +A G+ A + L + V GR G + Y S+ Sbjct: 285 HNVRNALAAAAIGLACGVSLAAIAAGLGQARPVAGRQVAHGLPGGVVLVDDSYNANPGSV 344 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + + +V G R + + A AD Sbjct: 345 AAAIDALAA-SGDEAWLVLG-------DMRELGPEAATLHAD 378 >gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae OXC141] Length = 457 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLVPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] Length = 452 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 81/414 (19%), Positives = 149/414 (35%), Gaps = 27/414 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ N + + I+ VS+DSR+I+A +FVA++G + D H F+ A Sbjct: 1 MILMSLNEVAN-ICQGRLNGVNTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEE 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA A++VS S+ P ++V +T K L ++ + +A+TG+ G Sbjct: 60 QGAVALLVSHEVD---------SSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V + I +RSG G + + PS + + Sbjct: 111 KTTVKEMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPS-------------NDFSVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ N+ H++ + + AK +FE L + + AI Sbjct: 158 ELGANHQNEIAYTTQLVRPDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LKENATAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLF 304 D N S H + T++ Sbjct: 217 YNLDSNGLPRWSDLFENKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G+ V NA+ AA L + A + + L+ L V GR S I Y Sbjct: 277 TIIGKHNVSNAVAAAALAVQANCTLADIQQGLQSLENVKGRVAVEVLPSGLKVIDDTYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +++ + + R +V+ G +G+ A ++T Sbjct: 337 SVPAMKAAVDLLGGFNGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVIT 390 >gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] Length = 468 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 82/423 (19%), Positives = 148/423 (34%), Gaps = 35/423 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + + + VS+D+R + A +F+A+ G + D H F A+ Sbjct: 1 MIEVQLAQLADVLGA-ELIGNDITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121 GA A++VS ++ P LVV +T + L L + + H +A+T Sbjct: 60 NGAAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALT 110 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++V +I + G G + P+ L + + Sbjct: 111 GSCGKTTVKEMAAEILSQKGNVLSTAGNFN----------NDIGVPLTLLRLTAE---HE 157 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A+ + + +K NL H++ + AK +FE L Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPL 217 Query: 242 S-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISV 295 + AII D + S+ + + T+ Sbjct: 218 NDSGLSTAIINVDSNDLAMWQPLLAQHAVKTFSLTDIDADFSATDIFINSEGRACFTMRT 277 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D L G V NAL AA L + +G V LE++ V GR + Sbjct: 278 SAGTIDITLTLAGIHNVSNALAAAALAMTVGATLEQVKAGLEQVVNVKGRVDVSHPREGL 337 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413 I Y + S++ + + + T R V+ G+ + + A+ A Sbjct: 338 RLIDDTYNASVASVKAAIDLLASFTGQRWFVLGDMAELGEESASLHREVAEYAMTKALDK 397 Query: 414 IVT 416 + T Sbjct: 398 VFT 400 >gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 459 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 28/369 (7%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I + ++ L I ++ KI VS DSR I+ +++ IVG K DG +FI + Sbjct: 1 MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 G+ A ++ +F N P ++VD+T+K L A + I+A+TG+ Sbjct: 61 QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + + G + LT + Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLN----NEIGVPLTILDFSE---------DTDIG 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + G + + TN+G H+ +T++ AK+ E L + Sbjct: 163 VVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKL-EILEGLKDDGI 221 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD ++K+ + G + + + KD ++ Sbjct: 222 FLYNGDDE----ILKKVLPSYEIKQKTISFGMGDKVDFKVEAKEYTSTSTNFSYKDENYS 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 PL G QVYN +A + + + L K R E G I D Y Sbjct: 278 VPLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNEL--IERDGFDILDDAY 335 Query: 363 AHTSNSLEM 371 SL+ Sbjct: 336 KSNPQSLKQ 344 >gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia mucilaginosa ATCC 25296] Length = 539 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 83/489 (16%), Positives = 148/489 (30%), Gaps = 53/489 (10%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L E +I E+ + ++DSR +Q G +FVA G DGH FIP A Sbjct: 3 KLSAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119 +GA +V + P + V + + A + ++ Sbjct: 63 FERGATLALVEREVLDEQGVPY-----PSIQVPDVVLAMGDLARYSIEQMRAQGELTVIG 117 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + I G + +G ++ P+ + S Sbjct: 118 ITGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSE----------VGVPLTVF---RADES 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + A G ++ + G+ +G H K L E + P Sbjct: 165 TRYLVIEMGADHVGNIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQP 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 S A+ ADD + R+ G + + T + + Sbjct: 225 TGSLAL-NADDERVLRMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEF 283 Query: 299 --------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349 +++ L GE V+N L AA + GI + L K R Sbjct: 284 TLRLPDGSEYEISSQLIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKWRMART 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCG---GDRDQG 397 I Y S+ L+ + + R V G GD Sbjct: 344 DRADGVTVINDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVE 403 Query: 398 KRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIE 454 + +G++ + + I D E A + G EA + Sbjct: 404 EHDRIGRLVVRMNISKLIAVGD----ETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRA 459 Query: 455 MLNKQDVLV 463 + D+++ Sbjct: 460 EVRPGDIVL 468 >gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella timonensis CRIS 5C-B1] Length = 446 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 57/373 (15%), Positives = 120/373 (32%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR IF A+ G +G+ F A+ +G V+ I+ + Sbjct: 16 VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQK------EYQIQQDERY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++ + L A+ K I+ +TGT+GK++ + + + G + Sbjct: 70 ILVEDCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + V + AS G Q + ++ TN+ Sbjct: 130 EIGVPKTLLRLTSE-------------HEIAVVEMGASHPGDIQSLVTVVEPDYALITNV 176 Query: 213 GRDHIDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 GR H+ + + A++ + E+ I D+ + +E+ + R+ Sbjct: 177 GRAHLQGFGSFEGVKRTKAELYDYMEVNKPNGKVFINQDNPHLQEMFQAHCPHVHRISYS 236 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA----------LVAAG 320 Q + + +N + + ++V+ L A Sbjct: 237 QTQQTGVSYQGKICSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAIS 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G+ + L R + I Y S+E L N + Sbjct: 297 IGHYLGVQPHEINHALTHYTPSNNRSQLE-VTKHNNLIVDAYNANPTSMEAALVNFAQMQ 355 Query: 381 SGRIIVVFGCGGD 393 + + G + Sbjct: 356 VAPKMAILGDMRE 368 >gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] Length = 473 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 89/446 (19%), Positives = 158/446 (35%), Gaps = 27/446 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ ++ DSR ++ G F+A+ G + DGH F AIA GA ++V+ Q + + Sbjct: 26 RVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFAREA 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I V + ++ LS AS + +++ VTG+ GK++ Q+ + G Sbjct: 86 GCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVLSARFKTESTKG 145 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 +N L P + A V + G RL + + Sbjct: 146 N--------FNNELGLPLTVLTA-----PKDCEALVVEMGMDGRG-QIARLAAVARPERA 191 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----RAHN 262 TN+G H++Y T++ AK + E L E A + AD ++ +++ Sbjct: 192 IITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGI 251 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R G+ + + + +G+ L G V NA AA + Sbjct: 252 RVVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIG 311 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381 ++ G+ V L GR + + Y + S+ L + + TS Sbjct: 312 LSYGMSLPDVCHALAGAQAQAGRQALLRMPEGYRLLDDAYNASPESMAASLSVLSSFSTS 371 Query: 382 GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 G I V G G+ D G + +A D I P+S Sbjct: 372 GSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICV--GPKSRRIAHAARAAGMDPA 429 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLV 463 E + A ++ DV++ Sbjct: 430 RIQEVDDAGAAREALSRIVRADDVVL 455 >gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 455 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 75/449 (16%), Positives = 157/449 (34%), Gaps = 29/449 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I VS D+R ++ G +FV + GN DGH + ++A + Sbjct: 16 ISIQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAA------ALSKEAAAAFWKRGYPNPP 69 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + ++ VD+ K L + + + I+ +TG++GK++ V + + Sbjct: 70 EDAVLIFVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLV----------ASVL 119 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G T + + P+ L + V + + S G + + + Sbjct: 120 GTTYRVHKTQGNLNNHIGLPLTLLQI---GEDTEVAVIEMGMSGRGEIELLSELAQPDMA 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T +G H+ +++ AK + L + + + R Sbjct: 177 IITMIGDAHLLQLGSREEIARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRR 236 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +S G + + V + ++ D +F PL G V NAL A + + Sbjct: 237 VSFGQKSTNN-IYPVDIQIGNDGSSFRLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEV 295 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + L + + R E S + Y + + + +L ++ + R V Sbjct: 296 SDEKIAQGLRDVQLSGMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLKGYRHKYV 355 Query: 388 FGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441 G+ ++ +G IA +LA+ ++ I E P Sbjct: 356 VLADMLELGELEEQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYW 415 Query: 442 KGNRIEAIRTAIEM-LNKQDVLVV-AGKG 468 + +A+ A++ ++ +DV++V A +G Sbjct: 416 FED-KQAMANALKEVIHPEDVVLVKASRG 443 >gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Flavobacteria bacterium BAL38] Length = 428 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 116/362 (32%), Gaps = 32/362 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS+D+R I+ +FVA+ G+ D + F +A+ +GA+ +V+ ++ D Sbjct: 15 SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDNSKFYIDERT------ 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+V+++ L A I+ +TG++GK++ + + + + IG Sbjct: 69 --LLVEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNL 126 Query: 151 STISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + T I + + + + + G Sbjct: 127 NNHIGVPLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGY--------------I 172 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ + K L+ + I ADD L+ Sbjct: 173 TNFGKAHLEGFGGVEGVIKGKSELYNYIKNNNKTVFINADDP--------LQKEKSNNLT 224 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 V + + D L G + N A + I Sbjct: 225 TYSFSTNETEADVTISKVVANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISD 284 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 L+ E +E R + + + I Y +S++ + N + I + G Sbjct: 285 KLIKEAIENYIPENNRSQLI-EKNGNKIILDAYNANPSSMQAAITNFIQLEDNSKIAILG 343 Query: 390 CG 391 Sbjct: 344 DM 345 >gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] Length = 467 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 75/476 (15%), Positives = 157/476 (32%), Gaps = 42/476 (8%) Query: 8 YKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI- 64 + ++ + + + + V +DSR Q+ +FV +VG + DGH ++ Q + Sbjct: 2 KRTIGQIASMCGGILHGETDAEQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVS 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A + + + V++T + L A+ + +++ +TG++ Sbjct: 62 EASAAAFLWQKNHGAPPSENA-------IEVEDTLEALQHLAAAYLRETGVSVVGITGSN 114 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ V + +G T + + P+ + Q Sbjct: 115 GKTTTKDIV----------NALLGTTFKVHKTEGNYNNHIGLPLTVLSM-----PQDTDI 159 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + +E G + RL Q A+ +L K Sbjct: 160 LILEMGMSGRGEIRLLANIAQPDVAIITNIGESHLLQLGSRAEIARAKLEITSGLKPGGL 219 Query: 245 IIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +IY D + + G ++ + G + + I+ + Sbjct: 220 LIYNGDEPLLSQVLAESETVKPEGLKLFTFGLATGNDDYPTEITSDGEGSLFITAQSGKE 279 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PL G+ V N L A + +D+ + + L L + R E V + + Sbjct: 280 AFRLPLLGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVNCPNGLTVLND 339 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 Y + S++ ++ + GR + V G G ++ +G A + T Sbjct: 340 AYNASPASMKAAIQTLSAYKTDGRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFT 399 Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 A+ G+ ++ E I+ L+ D+++V A +G Sbjct: 400 -----YGALGTSIAQGAQGLMPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRG 450 >gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis C231] gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis 1002] gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis I19] Length = 516 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 86/490 (17%), Positives = 153/490 (31%), Gaps = 48/490 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L E++ S+ + V DSR + AG +FVA+ G + DGH + +A Sbjct: 3 ELSLGTIAEIVGG-SLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAAKA 61 Query: 64 IAQGAEAIVVSSAY-----------------SLQDFSATIRSNTPILVVDNTRKFLSLFA 106 +A GA ++S + + + N V + L L A Sbjct: 62 VADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGLIA 121 Query: 107 SRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 + + ++ VTG++GK+S + I +G + G + Sbjct: 122 RHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTALKC 181 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 T + A G H G N+G H+ +Q Sbjct: 182 TAE-------------TQFLISEMSARGIGHIAHLAAIAPPKIGVELNVGTAHVGEFGSQ 228 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 A AK L E LP+ A++ ADD ++ R +V Sbjct: 229 TAIAQAKGELVEA-LPENGEAVLNADDPLVAQMASRTRARVTSYSAVSTAAAVYATDITF 287 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG--IDSALVLEHLEKLHV 341 + + + +E ++ + L + +AA + + Sbjct: 288 DHNACARFRLHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNRHVGA 347 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGK 398 R V I Y + S+ L + R V G G+ + Sbjct: 348 SAHRMSLVSCPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRES 407 Query: 399 RPIMGKIALDLADI----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 + + I +L +I I +N S GI + + N A + A Sbjct: 408 QTVHAAIGAELKNIGVHGLIAVGENSDSRALATAAE--KTGITTLVARTNLEAAHKLA-P 464 Query: 455 MLNKQDVLVV 464 +L+ DV++V Sbjct: 465 LLHADDVVLV 474 >gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 420 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 66/383 (17%), Positives = 133/383 (34%), Gaps = 39/383 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + +DSR +++G IF A+ G+ +G+ F +A+ GA AIV+ ++ +N+ Sbjct: 12 KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNY-----NNS 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V N L FA+ K + I+ +TG++GK++V + + + + G Sbjct: 67 DVFFVKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGN- 125 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 P+ L + V + A+ G + + G T Sbjct: 126 ---------YNNHIGVPLTLLNIRDS---HDIAIVEMGANHIGEIKALCEISLPDYGYIT 173 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G H++ + K L+E L S + + +D +++ Sbjct: 174 NFGLAHLEGFGGIEGVIKGKSELYEHLDKNNSISFVNPND----------------SIAL 217 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + V + + L L G +Q N L A + ++ + Sbjct: 218 KNCNSQNIEFTDGVNFFYKSGLLGVSFGNEEILTNLTGSYQENNVLAAITIGRNFELEDS 277 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV---- 386 + + + R + T + Y S+E L+N + V Sbjct: 278 KIAKGIANYIPQNNRGQIFKTG-KNTIFLDAYNANPTSMEASLRNAVNLYKKMPHVYIAG 336 Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409 G+ + + M +I +L Sbjct: 337 GLLELGEYSKSQHQRMIEIFQEL 359 >gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 436 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 71/450 (15%), Positives = 148/450 (32%), Gaps = 65/450 (14%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L+ ++ +F L+ + +KIN DSR ++ G F+ + G DGH +I Sbjct: 5 QLKKIVNGEFLNLV----------KNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIE 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA + ++ ++V +T + L ++ +T Sbjct: 55 DAIEKGAVGYFSEKPLNFKNG----------ILVKDTYQALVEVGKH-KRNQVRVVIGIT 103 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GTSGK+S + +F + ++ + + P+ LA S Sbjct: 104 GTSGKTSTKELM----------NFVLSNLASTYATQGNYNNEIGVPLTLANI---PESTD 150 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A G + I + K FE ++ + Sbjct: 151 FAIIEMGAGKVG-----------DIDYLGKIVNQDISVLVSVGHGHVEKFGSFENVIKGK 199 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + + +K+ +N + +K + + + I + + Sbjct: 200 GEIFNCGNYSVLPSELKKFYNPKNPITYGEDGDIE--IKDIKIVKDGTVGIIKYKNDKIE 257 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P+ N AG+ +G D LE L+ R E + + I Sbjct: 258 LKIPVYNIGVFKNIGAVAGVLYHLGYDPIKNLEVLKDFKSSSQRGEIIKIGNF-TIIDDS 316 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV--- 415 Y S++ ++ + ++ +I V+ G+ Q +GK+ D ++ Sbjct: 317 YNANPLSVKNAIEILNSMEGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYGN 376 Query: 416 --------TDDNPR---SEDPEKIRAEIIH 434 DD R ++ + I +I+ Sbjct: 377 ETKYVFEEIDDKSRVKHFDNKDDIAEDILK 406 >gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] Length = 453 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 70/396 (17%), Positives = 136/396 (34%), Gaps = 41/396 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + +++ + + + +R N+V DSR I G +FV + G + DGH FI Sbjct: 1 MKLT---LHEVAQVLGAKNDISL-YPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A G + + + P ++V++ L A+ K ++AV Sbjct: 56 PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + G L P Sbjct: 105 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + L L G + + A L Sbjct: 164 GDIHLLSEIAKPSLSVITLFGEAHLEFF-------GSREEIAKGKLQIADGMEPGSKLLI 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I +++ G+ L+ + +K +T +V D Sbjct: 217 PAYPIADKLLPSHVDLI--------------RFGEQADLQVTSLVESKDSLTFTVNFMDG 262 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+ G++ NA+VA+ + +G+ + + L L++ R E+ + + Sbjct: 263 DIFLPVTGKYNATNAMVASYVGKTLGVSNEAIKSALASLNLTRNRTEWKKAANGADILSD 322 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD 393 Y ++ +IL+ +I G+ I V + Sbjct: 323 VYNANPTAMRLILETFSSIPANEGGKKIAVLADMKE 358 >gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 434 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 74/448 (16%), Positives = 147/448 (32%), Gaps = 46/448 (10%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+ ++ DSR +F A+ G DG+ F +A+ GAE V+ + Sbjct: 12 RQFPNITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDP--------DVA 63 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ +VV + + A+ + I+AVTGT+GK++ + + + + Sbjct: 64 ADDRYIVVPDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTE 123 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + T + + A+ G D + G Sbjct: 124 RNHNNHIGVPLTLLRLTEE-------------DQFGVIEMGANHKGEIASLCDIAQPDFG 170 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN GR H++ + + AK LF+ L + I ++ E + Sbjct: 171 IITNFGRAHLEGFGSFEGVIEAKTELFDYLREHKGRVFINIGNSNIVE-KAKGIGNISYG 229 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ ++ + + L G + + N L A + + + Sbjct: 230 INNDKADVSGYITGQNPCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEV 289 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + E L R +++ T+ R I Y +S+ L+N ++ +V+ Sbjct: 290 EPNDINEALCGYIPENHRSQYMKTD-RNDLIIDAYNANPSSMAAALRNFNSLPYPHKMVI 348 Query: 388 FGC---GGDRDQGKRPIMGKIA-LDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 G GD + I L+ D ++ +I A I G F+ Sbjct: 349 LGDMLEMGDTAVEDHEEIVNIIRNQLSIDEVLL---------VGEIFASIDSGYKTFVTV 399 Query: 443 GNRIEAIRTAIEMLNK--QDVLVVAGKG 468 + A N +++ KG Sbjct: 400 DDLS-----AYLEANPPKDTAVLL--KG 420 >gi|309802501|ref|ZP_07696607.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] gi|308220901|gb|EFO77207.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] Length = 289 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV--VFGCGGD 393 VPGR E V G +Y+D+AH S++ ++ +RT R + V G G Sbjct: 121 MCRVQVPGRMERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGG 179 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAI 449 + +R + K AL + I T D+P EDP I ++ + R AI Sbjct: 180 KAVDRREGIVKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAI 239 Query: 450 RTAIEMLNKQ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 AI + ++++V GKG ET +I+ D ++R +LG Sbjct: 240 EKAIADAREHADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 288 >gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine-ligase murF [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 74/475 (15%), Positives = 155/475 (32%), Gaps = 50/475 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M++ + K +++N + DSR + +FVA+ G DGH ++ Sbjct: 1 MRI--MTLKQIAKILNSSLPEVEG----VVKGFCVDSRLTKKNEVFVALRGEHVDGHAYL 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + +GA A +V Y F + +N L + A + K ++AV Sbjct: 55 NEVKQKGALAAIVDQNYQGPVF------GMHLFRTENPLLALQMLAQKCLEKTS-RVVAV 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177 TG+ GK++ F++ + ++ +++ G +++ ++ T + L ++ Sbjct: 108 TGSIGKTTTKEFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGTEDILVLEMGMTEP 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + L + + + + + E Sbjct: 168 GQLSTL------------------VNIAHPEVSVLTTAALVHACRFETLKDIALTKAEIF 209 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + + + E + + S HL+ V + S+ Sbjct: 210 SHSHTRLGVVDREIEAYETIAQIGECKKISFSTVSSRADYHLETVNEEVRLKTEGQSISL 269 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 LPG+ ++N L A + + + + + L + R +FV Sbjct: 270 GKMC----LPGKHNLHNLLAAIAVARYFELTWNEIKQAIPFLKLPERRLQFVQKEGV-YF 324 Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 + Y + S++ L+ + T G I V G G +G+ AL+ D Sbjct: 325 LNDSYNASELSVKSALETLPNATGKGYKIAVLGSMMELGHFSDECHQRVGEFALNYVDKM 384 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I R E I T + L DV+++ KG Sbjct: 385 YC-----LGAECLPIVEVWKKANRPVELFMERSELISTLKKNLKPADVVLL--KG 432 >gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 465 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 144/397 (36%), Gaps = 31/397 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +I + +DSRH + G F+A+ G + D H F+ Q AQG + +V Sbjct: 30 QNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQGCQIAIVERPID---- 85 Query: 83 SATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 S+ L+V +TR L R ++A+TG+SGK++ + I R Sbjct: 86 -----SDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTTKEMLGSILSRLA 140 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G + P + + A+ G + + Sbjct: 141 PTLITRGNLNNDLGVPMMLLELRPE-------------HQFAVMELGANHQGEIDYTSNL 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ N+G H+ + AK ++ +L + AI+ +DD ++ + + A Sbjct: 188 VQPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHIL-PDGTAIVPSDDDFTATIRQNAG 246 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N G ++ ++ Q + P G V NA A Sbjct: 247 NHPILSFGEG---GDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +AIGI +++ LE+ GR F+ + I Y S+ K + Sbjct: 304 ALAIGIPLDDIVQGLEQAQGAKGRLNFIQHQNY-LFIDDTYNANPTSMRAAAKVLLQQQG 362 Query: 382 GRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIV 415 +++V+ G GD + +G+ ++L D +V Sbjct: 363 LKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVV 399 >gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] Length = 452 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V+ +S ++ +FV IV DGH FIP AIA GA+AI+VS L Sbjct: 18 GEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +V NT K L A I+++TG+ GK+SV + + Sbjct: 72 ----DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + L TP + A + + G + + I+ Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +T K L + L + D + Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ I + A N I + +++D+ P G+ ++N+++A +A Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ L++ + + GRF + + I Y ++ +++ ++++ +I Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415 + + GD + MG+ D + Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385 >gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK405] Length = 456 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 158/484 (32%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKEGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+ G++ NA++AA + G+ A + + KL + R E+ + + Sbjct: 262 DQRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSKLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EELTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2053A-b] Length = 455 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH +I Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L I + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441 >gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 436 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 72/450 (16%), Positives = 141/450 (31%), Gaps = 65/450 (14%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L+ ++ +F L +KIN DSR ++ G F+ + G DGH +I Sbjct: 5 QLKKIVNGEFLNLK----------ENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIE 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 AI +GA + ++ ++V +T + L + ++ +T Sbjct: 55 DAIEKGAVGYFSEKPLNFKNG----------ILVKDTYQALVEVGKHKRNQVKA-VIGIT 103 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GTSGK+S + + + G P I L Sbjct: 104 GTSGKTSTKELMNFVLSNLASTYATQGN-YNNEIGVPLTLANIPENIDL----------- 151 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 T + + A G + + ++G H+ + + + Sbjct: 152 -TIIEMGAGKVGDIDYLGKMVNQDISVLVSVGHGHVGKFGSFENV-------------IK 197 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I+ YS + + + I ++ + + + I + + Sbjct: 198 GKGEIFNCGDYSVLPSELKKFYNPKNPITYGEDGDIEIRDIKIVKDGTVGVIKYKNDKIE 257 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P+ N AG+ G D LE L+ GR E + + I Sbjct: 258 LKIPVYNIGVFKNIGAVAGVLYHFGYDPIKNLEVLKDFKSSSGRGEIINIGNF-TIIDDS 316 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL-DLADIAIV--- 415 Y S++ + + ++ +I V+ GD Q +GK D ++ Sbjct: 317 YNANPLSVKNAIDILNSMEGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGN 376 Query: 416 --------TDDNPR---SEDPEKIRAEIIH 434 DD R ++ + I +I+ Sbjct: 377 ETKYVFEEIDDKSRVKHFDNKDGIVEDILK 406 >gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 466 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 81/483 (16%), Positives = 154/483 (31%), Gaps = 55/483 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L + ++ + + + V +DSR+I+ G FV ++GNK DGHLF+ Sbjct: 1 MVLRLL---NLNDIWGPPYQNKLVNLDAPLGTVCTDSRNIKKGNFFVPLIGNKFDGHLFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + +G +A +S +L I VD+T++ A ++AV Sbjct: 58 EEVFEKGVQAAFISKDCNL-----AIPEELLYWQVDDTQEAYQKLAFLHRRLFSIPVVAV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + P + + + +N P L ++ Sbjct: 113 TGSAGKTTTRELIHSSLV----------PLGEVLATSNNNNNDIGVPFTL-----LKANV 157 Query: 181 GVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + +E + GL Q RL + + + + Sbjct: 158 NHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQNIASAKCEIAAHMN 217 Query: 240 KESPAIIYADDA---------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 II A D + +++ + K V + Sbjct: 218 PNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQTKKNVDYLGVLDS 277 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + F PL G N + A + + + + L Sbjct: 278 DNWQITYDGIIFQMPLQGRHNAINFMFALAVAYELNVPLDSIRNLSVNLPPG-----RNH 332 Query: 351 TNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGK- 404 + + G +D Y + S+ L + T GR V G G++ + + Sbjct: 333 SLTFGNINVLDETYNASPESVIASLDLLAT-KPGRHFAVLGNMYELGEKTIDYHEQIVQH 391 Query: 405 -IALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDV 461 IA L + I + P +E A ++ G + +A LN D Sbjct: 392 SIATGLTGLVICVN-GPEAE------AMLLAGQPLSYIEVVSTPEDAFLILKSWLNSGDY 444 Query: 462 LVV 464 L++ Sbjct: 445 LLL 447 >gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74] Length = 457 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 158/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIKTAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] Length = 452 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 73/479 (15%), Positives = 159/479 (33%), Gaps = 53/479 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL ++ ++ + + + + IN + DSR I+ G +F+ + G + DGH FI Sbjct: 1 MKLT---LQEIASVVGAQNDVSL-FEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A I S+ P ++V + K A K +++AV Sbjct: 56 DTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVIAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + I + + G P + Sbjct: 107 TGSNGKTTTKDMIATILATTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEKI 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + L + T +G H+++ +++ A+ ++ Sbjct: 157 VLEMGQDHLGDIALLSNLT---HPHIAVVTLIGEAHLEFFGSREKI--AQGKMQITQGMD 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K + D Sbjct: 212 GHGILIAPADKIISSFLPEKQKVI-------RFGADEDIFVTELEEHKNYLNFKTNFLDN 264 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + P+ G++ NA++A+ + + + ++ L +L++ R E+ + + Sbjct: 265 EIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEWKKAANGADILSD 324 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y ++++IL+ +I G+ I V + + + + L D A++ Sbjct: 325 VYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASL-DPAVIDR 383 Query: 418 DNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + E+ + E I+ + D +++ KG Sbjct: 384 IFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQIQKVL---GPNDQILL--KG 437 >gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 159/482 (32%), Gaps = 48/482 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 + + +++ + R+ +S DSR + +F+AI G DGH F+P+ Sbjct: 2 EFFLSELNDVLGNIRNLRESKRDFLSFKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEV 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +G +++V+ + + SN P VV++T + A K I+A+TG+ Sbjct: 62 LNKGVKSVVI-----KKGMQRLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGS 116 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + + + G + T Sbjct: 117 VGKTTTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIE---------------DK 161 Query: 184 HVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E GL Q + + TN+G HI +++ +A + L E Sbjct: 162 VLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITHA-KCEISKFLNPE 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKD 299 II A+D + ++ +K + + + + ++ ++ Sbjct: 221 GVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEE 280 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F L G N L A + +GID A + GR + + + Sbjct: 281 NTFEISLEGFHNASNFLFAYAVSKELGIDFASF--NKFDFVSFGGRNKILKSLKTTIYDE 338 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + S++ +KN+ + +FG +GK + +N Sbjct: 339 -SYNASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGKESEKYHKEIFNLINN 388 Query: 420 PRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 E I + + F+ N + + + K D +++ KG Sbjct: 389 SDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKGDSILI--KGSRC 446 Query: 472 VH 473 Sbjct: 447 WQ 448 >gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] Length = 417 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 16/157 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+ I SDSR ++ G +FVAI G + DGH F+ Sbjct: 10 MGLAEIEQAVHGRLVAAEGIASNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 66 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115 + AQGA A +V + + P +VVD+T + L A + P Sbjct: 67 SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 118 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ +TG+ GK++ + + G + +G + Sbjct: 119 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNN 155 >gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 82/412 (19%), Positives = 139/412 (33%), Gaps = 37/412 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L ELI + I+ VS+D+R+I + +F+A+ G + D H F Sbjct: 5 QLSQLASVLNAELIG---------ADTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENI 117 A GA+A++VS + + P LVV +TR L + + KH Sbjct: 56 TAKDNGAKALLVSK---------RLPVDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKT 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 LA+TG+ GK++V I G G + TP Sbjct: 107 LALTGSCGKTTVKEISAAILATKGNVLATAGNFNNDIGAPLTLLRLTPE----------- 155 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + A+ + + +K NL H++ + + AK +FE L Sbjct: 156 --YQYAVIELGANHQQEISYTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGL 213 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + A + + + + T+ Sbjct: 214 SDGGIAIVNLDSNDLPLWQPLLAQHQVLTFSATASDADYHAERININAQGLACFTMCTPI 273 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L G V NAL AA L I++G A V LE + V GR + + Sbjct: 274 GKVDVNLTLAGMHNVANALAAAALTISLGATLAEVKAGLETMANVKGRLDITEPRAGLRL 333 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 I Y + +++ + + R ++ GD +G+ A Sbjct: 334 IDDTYNASVAAVKAAIDVLANFQGQRYFILGDMAELGDESDNLHREVGEYAQ 385 >gi|94991839|ref|YP_599938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] gi|94545347|gb|ABF35394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] Length = 121 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIH 434 + +G+++++ G G++ + +R G++ ++ I+T D+P EDPE I EI Sbjct: 1 MEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDISKEIAS 60 Query: 435 GIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +R +AI+ A+ + +D +++AGKG + IV + + D I + Sbjct: 61 HIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDLAIAKHY 120 Query: 493 L 493 L Sbjct: 121 L 121 >gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus mitis SK597] Length = 457 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 75/485 (15%), Positives = 154/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEKELA----------NHPYILVDDVLTAFQTLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTIYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D + + G+ L+ + K +T Sbjct: 209 MSSNSLLLAPADPIVESYLPADKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEWKKAANGADVL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVID 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chryseobacterium gleum ATCC 35910] Length = 423 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 142/437 (32%), Gaps = 46/437 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR I IF A G + +AI GA A++V + I Sbjct: 16 VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE-------LPEFENRDKNI 68 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T +FL A K + +TG++GK++ + + + G + Sbjct: 69 FYVPSTLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNN 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P + + + A+ + + G TN Sbjct: 129 HIGVPLTILSIKPE-------------HEMAVIEMGANHQKEIEFLCTISQPDFGYITNF 175 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L++ L ++ +D +++ N ++ Sbjct: 176 GKAHLEGFGGFEGVIKGKSELYDYLKNNNRTIVVNENDPIQ---LEKTENYPSKITFGKE 232 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + + + + L GE+ N AA L + GI + Sbjct: 233 TS------NYNFESFSEEHFVGLIYQGVKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKI 286 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389 LE R + V G + +D Y +S+ L N + + I++ Sbjct: 287 KHALELYTPTNMRSQVVKKE--GRTLVLDTYNANPSSMTASLNNFISFEGSKTIIIGDML 344 Query: 390 CGGDRDQGKRPIMGKIALD-LADIAI--------VTDDNPRSEDPEKIRAEIIHG---IP 437 GD + + + K+A D D I V + E+ ++ + Sbjct: 345 ELGDESEKEHQNILKLAQDLHFDEIITVGKHFKAVNSSDLAFENTTELAEYLKQHKIQTE 404 Query: 438 GFIEKGNRIEAIRTAIE 454 + KG+R A+ I+ Sbjct: 405 NILLKGSRGIALEKIID 421 >gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 447 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 48/448 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR + AG +FV + G + DGH FI QAIA GA A S + Sbjct: 21 VTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGAIATFWS--------VQDQPED 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V + + + A+ ++A+TG++GK++ + ++ + G Sbjct: 72 ITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTKDLTASVLSQAFRTYKTQGN 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P L V + + G + + Sbjct: 132 --------YNNEIGLP-----YTILHMPKDTKVVVLEMGMDHAGDLTTLSTIARPDIAAI 178 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268 T +G HI+ ++ AK+ + + A + ++ +V+ Sbjct: 179 TMIGEAHIENLGSR-----AKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMTQQVV 233 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G + + + ++ K+ D+ PL G + V NAL+A + G+ Sbjct: 234 TFGIDAGDVAAHILEEHAEQTVFSV----KEQDYRIPLLGTYNVKNALIAYSIGEKFGVT 289 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387 + L+ + V R +++ + + Y ++ ++L + + GR V Sbjct: 290 PEQIANGLKNVQVTKNRTQWLEMENGTRLLSDVYNANPTAMGLVLDSFGKLPVQGRRFAV 349 Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIE 441 G M + D + E + + E+ +P + Sbjct: 350 LADMLELGPESSVMHAAMADHVQNY-DGLFLV-----GEQMDYLAKELAARDSDVPLELY 403 Query: 442 KGNRIEA-IRTAIEMLNKQDVLVVAGKG 468 N + A I ++L D+L++ KG Sbjct: 404 DANELAALIEDLKQLLQPADMLLL--KG 429 >gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa M567] gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 535 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 137/480 (28%), Gaps = 44/480 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +I E+I P+ R+ ++DSR + G +FVA G DGH F+ Sbjct: 1 MIKLSAAEIITATGGSPLGLAGRESELGATFATTDSREVIPGTLFVAKPGEVTDGHNFVS 60 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NI 117 A +GA +V + P + VD+ + A K + Sbjct: 61 GAFDKGAVLALVERPVKDERGILY-----PSIQVDDVVLAMGKIAQYAVEKMRSLGDLTV 115 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TG++GK++ + I G + +G + P+ + +A Sbjct: 116 IGITGSAGKTTTKDLLAAILSSQGETIAPVGSYNGE----------VGVPLTVFRADEST 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + + + + + + Sbjct: 166 RYLVIEMGADHVGNIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEG---- 221 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNKQQVTI 293 + I+ ADD + RA + + + Sbjct: 222 IRTGGTLILNADDERVARMSARASAPVTYFGVGEKPQYERYTAALGLHTNDAGCPEFTLR 281 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTN 352 + +++ L GE V N L AA + G+ + L R Sbjct: 282 LPDASEYEISSKLIGEHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKWRMARTDRA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCG---GDRDQGKRPIMGKI 405 I Y S+ L+ + + G R V G G+ + +G++ Sbjct: 342 DGVTVINDAYNANPESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLGRL 401 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + ++ N E A + G EA+ L D+++ Sbjct: 402 VVRMNISKLIAVGN---EAKPAYNAAHLEGSWGNEATWVETPQEALNILRAELRSGDIVL 458 >gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] Length = 426 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 82/488 (16%), Positives = 179/488 (36%), Gaps = 73/488 (14%) Query: 1 MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MK L L+ + F +++L +I +V DSR I+ +F AI +G+ + Sbjct: 1 MKILTKLLKEKFK--LDKLD---------EILKVVMDSRKIEKDSLFFAI----NNGNKY 45 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I + + +GA ++ ++ ++VV++T K + A ++A Sbjct: 46 IDEVLERGATLVIADD---------YSGDDSRVIVVEDTIKAMQDLAQEYRKALGVKVIA 96 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + + + G +N + P I Sbjct: 97 ITGSNGKTTTKDMIYSVLSQKYRCKKTEGN--------YNNHIGLPFTILQLDDTDE--- 145 Query: 180 QGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 V+ + + S G + RL I K TN+G H+++ +T++ F AK + + ++ Sbjct: 146 --VSVLEMGMSGFG-EIDRLCEIAKPDYALITNIGDSHLEFLKTRENVFKAKGEIIKYVV 202 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D Y + + + + + + I++ GK Sbjct: 203 SENLIIF---GDDYYLKNLSGITVGYEKNCKKRIENFKDTDEGIEFSLEGNNYKINLNGK 259 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 N +A + +++ + S + + + L++ P RF+ + I Sbjct: 260 -----------HNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPMRFQKI-VKGETLYI 307 Query: 359 YVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCG---GDRDQG-KRPIMGKIALDLADIA 413 Y + S+ L+ + + R I V G GD++ R I+ K D Sbjct: 308 NDAYNASPISMRYSLETFDKLYNDRTKIAVLGDMLELGDKEIEFHREIIKKALDIKVDRI 367 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAG-KGH 469 + + + E++ I + E+I+ +I+ +++ G +G Sbjct: 368 YI------YGERMQKAYELMKQNKKIITSLDKNFIRESIKESIKGSKA---ILLKGSRGM 418 Query: 470 ETVHIVTN 477 + I+ Sbjct: 419 KMEEIIEG 426 >gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] Length = 471 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 75/393 (19%), Positives = 135/393 (34%), Gaps = 31/393 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V +S+ IQ G +F+A+ DGH F+ A+A+GA+A++VS +N Sbjct: 29 VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIVSKLIDN-------NANDK 81 Query: 92 ILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++V+NT LS A+ + + +TG+ GK+S + ++ + Sbjct: 82 IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTYYKTFASRKNF 141 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + S + + SS G Q + + L T Sbjct: 142 NNLLGMLL-------------NLASVPINTEYAIFELSTSSPGGLQKLVKILPLNIAVLT 188 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRV 267 N+ H ++ + + AK +F L+ K I + + K N Sbjct: 189 NINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINKLGINNVFTF 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + I A + K + IS G D+ F + G Q +N + I Sbjct: 249 GTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVMLVSNICKI 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIRTITSGRI 384 + V E + L GR + N +D Y S++ L + I + R Sbjct: 309 NLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLGQIKAKRK 368 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414 + + G G+ + + I Sbjct: 369 VAILGDMLELGNNTKEHHLNLVTYIKKYNIHVI 401 >gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 328 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 10/144 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F EL+ L + + + VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA Sbjct: 2 TFSELVVPLDALLVGG-DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAV 60 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSS 128 +V P LVV +TRK L+ + + AVTG+SGK++ Sbjct: 61 GALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTT 112 Query: 129 VASFVQQICQRSGLSSFQIGPTST 152 V + I + G G + Sbjct: 113 VKEMLASILRTRGPVLATRGNLNN 136 >gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia sp. 383] Length = 468 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 78/411 (18%), Positives = 140/411 (34%), Gaps = 27/411 (6%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + VS+DSR G +FVA+ G + D H F+ A+GA A +V+ + Sbjct: 15 GATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGASAALVAHVPA 74 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 A TR L A + ++AVTG++GK++V + I Sbjct: 75 GVTMPAIEGGE--------TRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFA 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + ++ +++ P+ L + + + + + R Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEILAR 178 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L N R+H ++ T +A LP + A+ ADDAY+ Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A ++ G+ + V + ++ I GE NAL A Sbjct: 236 AATGNRILDFALHDAGRQNDAQ-VTGRLHGGELAIDTPAGVVTVRLRALGEHNARNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374 + G+ + + + LE V GR + + G + D Y +S+ + Sbjct: 295 TAAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAID 354 Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422 + + R++V+ G GD +G A D D R Sbjct: 355 VLAAQPAPRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRD 405 >gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis] Length = 446 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 91/481 (18%), Positives = 151/481 (31%), Gaps = 73/481 (15%) Query: 9 KDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + E++ + DSR + G +FVA G DGH + +A G Sbjct: 7 GEIAEIVGG----KATGESVTVTAPAVLDSRQAEPGGLFVAFAGEHADGHDYAERAGRAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++ S ++ P +VV++ R L A+ + + + ++ VTG+ G Sbjct: 63 AVAVLGSR-----------PTSLPTVVVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+ + + +G + G +N L P L ++ + Sbjct: 112 KTGTKDLLAAVLSGAGPTVATTGSL--------NNELGVP-----LTMLRAQAATRFLVL 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A G + N+G H+ ++ A AK L + L+P + + Sbjct: 159 EMGARHEGDIAELTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVL 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D M + L V + T+ P Sbjct: 219 --NADDPRVASMSVLTDGPVLTFGRTDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G Q NA AA +A G+ L L + P R E + Y Sbjct: 277 LVGAHQALNASAAAAAALAAGVPLDLATTALTTASLSPWRMELRDLACGATLLNDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRP--------------IMGKIALD 408 +S L + I GR I V G GD + + +G+ A Sbjct: 337 PDSTRAALDALSAIEGGRRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVVAVGEAARP 396 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGK 467 LAD G + GN A+ + L DV++V A + Sbjct: 397 LAD---------------------GAGERAVVLAGN-DAAVDWLRDHLAAGDVVLVKASR 434 Query: 468 G 468 G Sbjct: 435 G 435 >gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54] gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae G54] Length = 457 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase [Streptococcus pneumoniae R6] gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae D39] Length = 457 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 154/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D ++ + G+ L+ + K +T Sbjct: 209 MASGSLLLAPADPIVEDYLPIDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella buccalis ATCC 35310] Length = 446 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 57/400 (14%), Positives = 125/400 (31%), Gaps = 38/400 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR +F A+ G +G+ F A+ +G V+ I+ + Sbjct: 16 VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQK------EYQIQEDERY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++ + L A+ I+ +TGT+GK++ + + + G + Sbjct: 70 ILVEDCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P + V + AS G Q + + TN+ Sbjct: 130 EIGVPKTLLCLKPE-------------HEMAVVEMGASHPGDIQSLVTVAEPDYALITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ + + +++ + ++ + + V ++GY Sbjct: 177 GRAHLQGFGSFEGVMRTKAELYDYMQQHKPQGLVFINQD-NEYLKEMFRTHCPNVKAMGY 235 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-------------NALVAA 319 + + + + + + N L A Sbjct: 236 AQTDRPDISIRGEVVSCAPYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAI 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + G+ + L R + T I Y S+E L N + + Sbjct: 296 TIGSHFGVSDEQINHALAGYVPSNNRSQLQITA-HNKLIVDAYNANPTSMEAALTNFQRM 354 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIV 415 + + + G + KI +A D + Sbjct: 355 DVPKKMAILGDMRELGDVSMAEHQKIVDLIATLNLDKVWL 394 >gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 458 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 160/460 (34%), Gaps = 42/460 (9%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E+ +++ + + VS+D+R +Q G +FVA+ G DGH F+ A Sbjct: 6 LAEIASKVGG-ELHGGDTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSD--DLPAAG 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 ++VS + + P ++VD+TR L A P +LA+TG++GK++V Sbjct: 63 VMVSR---------LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + I + + G + P+ L + V + A+ Sbjct: 114 EMLSAIAREHAPTLATRGNLN----------NDIGVPLTLLEMARNHR---YAVVEMGAN 160 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 HG + + TN G H++ + + AK ++ L + A+I ADD Sbjct: 161 HHGEIAYLTSLARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSG-LGPDGVAVINADD 219 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V G + + + + G+ PG Sbjct: 220 -----IYADYWYGLNPGRRVISFGLDHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRH 274 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NAL AA + I +L L ++H V GR V + Y S Sbjct: 275 NALNALAAAAAALGAEIPEEAILRGLARVHPVSGRLVAVPGRGGALLLDDSYNANPASTR 334 Query: 371 MILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ + R +V+ G GD + +G A +L ++ + P Sbjct: 335 AALEVLSGHGGERCMVLGDMGELGDEGETLHAEIGARARELG------IEHFHAVGPLS- 387 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + G ++ I ML+ ++V KG Sbjct: 388 AHAVRAFGEGAQHHPDQAALIEALRPMLHAGMTVLV--KG 425 >gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 461 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 72/428 (16%), Positives = 141/428 (32%), Gaps = 48/428 (11%) Query: 1 MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + +N++ DSR+I G +F+ + G + DGH Sbjct: 1 MKL------TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A A S P ++V+N A K +++ Sbjct: 54 FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK+S ++ + ++ + G P + Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN----------YNNDIGLPYTVLHMPEDTE 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + L R+ + T +G H+ Y +++ A+ ++ Sbjct: 154 KIVLEMGQDHMGDIQL-LSRIA--RPHIALLTLIGEAHLAYFGSREKI--AEGKMQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + +I D + + G L K +T Sbjct: 209 MDSNGILIAPGDPILDPYLPDSQMVI-------RFGDHQELVVEDIKECKDSLTFRTNVL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G++ NA++AA + + + ++E LE + + R E+V + + Sbjct: 262 PRPVTLPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALETVKLTRHRTEWVKAANGADLL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411 Y ++ +IL+ I +G+ I V + + ++ D Sbjct: 322 ADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRID 381 Query: 412 IAIVTDDN 419 + D+ Sbjct: 382 QLVFYGDD 389 >gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] Length = 476 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 135/427 (31%), Gaps = 35/427 (8%) Query: 6 LIYKDFPELI----NQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +I E+ + P + V +DSR + G ++VA +G DGH F+ Sbjct: 1 MIALSLAEIAVATGGTVHGAPTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQFV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA A + S P +VVD+ + + + + L V Sbjct: 61 GAARDKGAVAALTSRPVDE----------LPCVVVDDVQAAFVAISRAVLER--ATDLTV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 G +G S S + G ++ I P + +S T + Sbjct: 109 IGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVGVPLTVT----------RVTADT 158 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + A G + G N+G H+ +++A AK L E LP Sbjct: 159 RFLVVEMGARGIGHINYLTRIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEA-LPS 217 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + + R V V + + ++ Sbjct: 218 DGVAVLNADDPVVRAMADRTSARVVLVGEAAEAAVRAEDVTVGSDG-RATFRVTTPAGGA 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIY 359 L G V NAL + + GI + + V R E + Sbjct: 277 TIALRLVGRHHVGNALAVLAVALECGIPLDTATTSIAEAGIVSRWRMEVTERPDGVTVVN 336 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIA-LDLADIAI 414 Y +S+ L + ++ GR V G GD +G A D + Sbjct: 337 DAYNANPDSMRAALSALESMGEGRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELL 396 Query: 415 VTDDNPR 421 V + R Sbjct: 397 VVGETAR 403 >gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14] Length = 453 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 175/483 (36%), Gaps = 60/483 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + +++ + + + + N+V DSR + G +FV + G + DGH FI Sbjct: 1 MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A G + + + P ++V++ L A+ K ++AV Sbjct: 56 PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + G L P Sbjct: 105 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + L L G H+++ +++ AK +L + Sbjct: 164 GDIHLLSEIAKPSLSVITLFG------------EAHLEFFGSREEI--AKGKLQIADGME 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ D + +++ + + G+ L+ + +K +T +V D Sbjct: 210 PGSKLLIPADPIADKLL-------PSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDG 262 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+ G++ NA+VA+ + +G+ + L L++ R E+ + + Sbjct: 263 DIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEWKKAANGADILSD 322 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ +I G+ I V + + ++ L L+ D Sbjct: 323 VYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTV 382 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVA 465 I + E ++ +++ I R A ++ E L K+D ++ Sbjct: 383 IFYGQDI--EGLAQLASQMFP-IGKVYFF--RKNAEQDQFEDLVKQVRESLGKEDQILF- 436 Query: 466 GKG 468 KG Sbjct: 437 -KG 438 >gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] Length = 457 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 84/483 (17%), Positives = 175/483 (36%), Gaps = 60/483 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + +++ + + + + N+V DSR + G +FV + G + DGH FI Sbjct: 5 MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A G + + + P ++V++ L A+ K ++AV Sbjct: 60 PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + + G L P Sbjct: 109 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G H+ E + L L G H+++ +++ AK +L + Sbjct: 168 GDIHLLSEIAKPSLSVITLFG------------EAHLEFFGSREEI--AKGKLQIADGME 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ D + +++ + + G+ L+ + +K +T +V D Sbjct: 214 PGSKLLIPADPIADKLL-------PSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDG 266 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+ G++ NA+VA+ + +G+ + L L++ R E+ + + Sbjct: 267 DIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEWKKAANGADILSD 326 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ +I G+ I V + + ++ L L+ D Sbjct: 327 VYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTV 386 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVA 465 I + E ++ +++ I R A ++ E L K+D ++ Sbjct: 387 IFYGQDI--EGLAQLASQMFP-IGKVYFF--RKNAEQDQFEDLVKQVRESLGKEDQILF- 440 Query: 466 GKG 468 KG Sbjct: 441 -KG 442 >gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 156/481 (32%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ ++ DSR +++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSERPVA----------GGAYILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K+ +I D E + G + K ++ Sbjct: 209 LKKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGANSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEIIHGIPGFIEK----GNRIEAIRTAI-EMLNKQDVLVVAGK 467 T +D E + EI + ++ E + A+ E L D +++ K Sbjct: 381 THLFLYGQDMEALYDYAKEIYPPGKVYYFIKNDEKDQFEQLTKAVRENLTPADQILL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] Length = 473 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 87/475 (18%), Positives = 154/475 (32%), Gaps = 45/475 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + V DSR + G +F A G + DGH + Sbjct: 1 MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A P +VV++ L A + + ++ +TG Sbjct: 60 ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G +N + P + ++ Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSL--------NNEIGLP-------VTALTATAAT 154 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 H+ +E + G+ R G N+G H+ +++A AK L E LP+ Sbjct: 155 EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEV-LPE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ ADD + + R ++ + + Sbjct: 214 DGCAVLNADDPLVRAMASRTRARVLLFGEAPEADVRGEKVRMTPDG-RPAFELHTPTGCS 272 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + E L + R E + Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332 Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409 Y S+ L+ R GR V G GD + +G++A+ L Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 393 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446 >gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC 43183] Length = 475 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 71/439 (16%), Positives = 151/439 (34%), Gaps = 34/439 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++DSR+ G +F+A+ G+ +G+ F +A+ G+ VV A +T Sbjct: 57 TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAG------DT 110 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VDN L A+ + I+ +TGT+GK++ + + + + +G Sbjct: 111 RYILVDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNL 170 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + T + V + AS G + ++ + G T Sbjct: 171 NNPIGVPLTLLRLTTE-------------HELGVVEMGASHPGDIKELVEIAEPDYGIIT 217 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K L++ L + + I D + R N Sbjct: 218 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFLHQDNPYLREIARGLNPITYGEEN 277 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + EG+ L GE+ NAL A + G+++ Sbjct: 278 SLYINGHVTGN--SPYLAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGVEAE 335 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L + R + T I Y S+ + N R + + + +++ G Sbjct: 336 KIDKALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLAAIGNFRNMQAEKKMLILGD 394 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 + + +I L + ED + + + A+ Sbjct: 395 MRELGKDSAEEHQRIVDYLEEY--------GFEDVILVGELFAATRHTYTTYPD-APALI 445 Query: 451 TAIEMLNK-QDVLVVAGKG 468 A++ +++ KG Sbjct: 446 AALQKNKPCGKTILI--KG 462 >gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 455 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 74/428 (17%), Positives = 137/428 (32%), Gaps = 40/428 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q P + ++ + +DSR I AG +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116 + + L VD+T L A Sbjct: 55 ED------------VLAAGAAAVVVSHEDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TG+ GK++V + + +R + ++ P+ L Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + G K A N R H+ + Sbjct: 153 KEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQ 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L ++ A+I +D ++ + + G + + G +H + + + + Sbjct: 213 GLGEDGLALIPCEDEHAAVF--QTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCG 270 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+PG V+NA A L +A G+ V E L+ + GR Sbjct: 271 NERAAVVLPVPGRHNVHNAAAATALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGAT 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411 I Y +S++ + + + + R I V G G+ + + M A + Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389 Query: 412 IAIVTDDN 419 A DN Sbjct: 390 AAYFVGDN 397 >gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Flavobacterium psychrophilum JIP02/86] Length = 427 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 62/362 (17%), Positives = 127/362 (35%), Gaps = 32/362 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS+D+R I+ +F+A+ G+ D + F +AI++GA +++ + Sbjct: 14 TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKM----- 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V ++ + L A + I+A+TG++GK++ + + + + IG Sbjct: 69 --ILVLDSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNL 126 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 + P+ L S+ + V + A+ H + L I + G Sbjct: 127 NNH----------IGVPLTLL---SFDEDTDIGIVEMGAN-HQKEIELLCSIAEPNFGYI 172 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ AK L+ L + A + DD + + Sbjct: 173 TNFGKAHLEGFGGIDGVIKAKSELYNYLEENKQTAFVNLDDEIQNQ---------KTMQI 223 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + Y V + + K L G + N A + I Sbjct: 224 MRYSFSIAKESDVKIDFVVANPMVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIAD 283 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + ++ R + + NS + Y +S+E + N + + I + G Sbjct: 284 DDIKDAIQNYIPTNNRSQLIEKNSNNIILDA-YNANPSSMEAAITNFIQLKAKDKIAILG 342 Query: 390 CG 391 Sbjct: 343 DM 344 >gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70] gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016] gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae AP200] Length = 457 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAYLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L+ D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium luteolum DSM 273] gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium luteolum DSM 273] Length = 476 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 151/463 (32%), Gaps = 32/463 (6%) Query: 15 INQLSIFPMQWRERKINE--VSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L + P R++ + + DSR I G IF+A+ G DGH F+ +GA+ Sbjct: 13 CGELVLNPEAHPRREVQDPVAAIDSRAIDGPG-IFIALRGESTDGHRFVQDVFRRGADFA 71 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +VS + + +VV +T K L AS P ++ + G++GK++ Sbjct: 72 MVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKE 131 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + G + PI L + V + + Sbjct: 132 MTAAVLRTGFKVHVSRGNFNNH----------LGVPITLLGMRRD---TEIAVVEMGINH 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + + G TN+G +H+++ + A+ +LF+ L + ADD+ Sbjct: 179 PGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFDWLDRCRGTIFVNADDS 238 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + T++ G Sbjct: 239 RLADAATDSERHVLYGTGSPEGRICSAESVSVGHGGRVSFTLTAGAVREQVFLQFTGRHN 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V NA+ AA + + G+ +A V LE L R E I Y +S+ Sbjct: 299 VQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLELSEEGGV-TIINDTYNANPDSM 357 Query: 370 EMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L + + GR I V G G + + +G+ L T Sbjct: 358 RLALDTLADMPCSGRRIAVIGDMLELGATAEDEHRSIGRYLAGLPIDMFFTFGALAGLGG 417 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ G R E + E + D ++ KG Sbjct: 418 RELPERCRGHFTG------RDELLHALQEEVRSGDAVLF--KG 452 >gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] Length = 456 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 149/446 (33%), Gaps = 49/446 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I G +FV + G + DGH FI A GA A + P ++ Sbjct: 31 FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 79 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 V++ A+ K ++ AVTG++GK++ + Q+ + L+ G Sbjct: 80 VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 134 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +N + P +G + +E L L + Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 184 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 + AK +L E ++ D + G Sbjct: 185 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVNAYLPEKQKVV-------RFG 237 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I K +T + P+ G++ NA++AA + + G+ A + + Sbjct: 238 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSEAAIRD 297 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391 E L + R E+ + + Y ++ +IL+ TI +GR + V Sbjct: 298 SFETLQLTRNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357 Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442 G++ M ++ D+ D I + ++ +++ E+ Sbjct: 358 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E L +QD +++ KG Sbjct: 416 DQFEDMVKQVKESLKEQDQILI--KG 439 >gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] Length = 825 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 147/398 (36%), Gaps = 25/398 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E++ L + ++ +I EVS DSR + +F A+ G DGH ++ + QG Sbjct: 14 KEILRILDCKACEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVR 73 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 VV + S VVD L A+ G+ ++ +TG++GK+ V Sbjct: 74 NFVV----TGLRAGFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIV 129 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ Q+ S P S S L + S ++A Sbjct: 130 KEWLYQL--LSDEPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQA 187 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 I+ G FT+LG H + +++Q K L ++ II + Sbjct: 188 -----------MIRPEIGIFTHLGDAHGENFESRQQKLAEKAI-----LFRDCRCIIGRE 231 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + R +++ + + +++ + +++ V + E F P P E Sbjct: 232 GEALDYIASRLRPDVKKMIWGSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDE 291 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 N + A + + GI + E + +L + R E +R I Y + S Sbjct: 292 ASFENCMNAVCVLLLEGISPVFIAERVARLQPLAMRMEIKDGINRCVLINDYYNSDAASF 351 Query: 370 EMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406 ++ L + +GR +V+ D G+R + ++A Sbjct: 352 QLALNTLAMQDAGREKVVILSDFVDTGTGERELYREVA 389 >gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 456 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 76/461 (16%), Positives = 130/461 (28%), Gaps = 43/461 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I I Q I + +DSR I AG +FVA+ G DGH F+ Q Sbjct: 9 IVNTTLGAIAQALGLDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDGHQFVDQ---- 64 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 ++ A + S+ P L V NT + P ++AVTG+ GK Sbjct: 65 -----AAAAGAIALMVEAPLSSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGK 119 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G + + P + Sbjct: 120 TTTKEMIAAVLSHYGAVLKTEANFNNEIGVPKTLLQLEP-------------HHQFAVIE 166 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 + + G + TN+G HI +++A AK L E+ P + + Sbjct: 167 MGMRARGEIALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAEMPPGGTAVLN 226 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 V + G + I+ + T+ Sbjct: 227 ADSPLLLPTVAQVWSGRTITYGLEGGTLRGIYQPPQTLHVGGRTYTV------------P 274 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 +AA + + L L + GR + Y Sbjct: 275 LAGAHHALNFLAALGVLQALDVESDRLPVQLTLELPSGRGGRYRLEPDILLLDETYNAGL 334 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422 S+ L +R++ R + V G G +G L D + D Sbjct: 335 ESMVAALHLLRSLPGQRHLAVLGPMRELGAFSLSFHEQVGATVAQLDLDGLFILDQ---G 391 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 E+ + G + G+ E + + L D L+ Sbjct: 392 EEGAALAQ--GAGQIPTQQFGSHEELVEYLLRELQAGDRLL 430 >gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes sp. HGB5] Length = 414 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 75/443 (16%), Positives = 135/443 (30%), Gaps = 62/443 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I+ G +F A+ G DG+ F A+++GA +VV ++ S Sbjct: 14 ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVDDPAAV--------SGDRT 65 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V +T + L A + ILA++G++GK++ V ++ G + Sbjct: 66 VLVGDTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNN 125 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + AS+ G + G TN+ Sbjct: 126 H----------IGVPLTLL---AMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNI 172 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H++ + K L + L A + +D + SV Sbjct: 173 GRAHLEGFGGPEGIRRGKGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAEYYSVTL 232 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 H + N A + ID + Sbjct: 233 ADGIAHHLEGDYNRF--------------------------NIAAAVAVGRYFDIDGERI 266 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391 + R + T + Y +S+ + N GR V G Sbjct: 267 RHAVGSYMPDNNRSQRTETERNTLIVDC-YNANPSSMRASVLNFLAEPAGGRSRRVLILG 325 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNR 445 + G + DI + NP +E + + A + +R Sbjct: 326 DMLELGAWSE-----QEHRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSR 380 Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468 E I + ++V KG Sbjct: 381 EELIAELRRRPVENAFVLV--KG 401 >gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 504 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I G +FV + G + DGH FI A GA A + P ++ Sbjct: 79 FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 127 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 V++ A+ K ++ AVTG++GK++ + Q+ + L+ G Sbjct: 128 VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 182 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +N + P +G + +E L L + Sbjct: 183 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 232 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 + AK +L E ++ D + G Sbjct: 233 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEKQTVV-------RFG 285 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I K +T + P+ G++ NA++AA + + G+ A + + Sbjct: 286 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSEAAIRD 345 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391 E L + R E+ ++ + Y ++ +IL+ TI +GR + V Sbjct: 346 SFETLQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 405 Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442 G++ M ++ D+ D I + ++ +++ E+ Sbjct: 406 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 463 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E L +QD +++ KG Sbjct: 464 DQFEDMVKQVKESLKEQDQILI--KG 487 >gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 475 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 88/479 (18%), Positives = 161/479 (33%), Gaps = 46/479 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I +L + E + V +DSR +AG ++VA G DGH F+ A+ Sbjct: 1 MIQLTTRQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGT 123 GA A + ++V + ++ + A + + P+ ++AVTG+ Sbjct: 61 GNGAVASLAEREVPG-----------TYVLVPDVQEAFARLARWMVDELPDLQVVAVTGS 109 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK+S + Q+ +G + + ++ + P + + Sbjct: 110 SGKTSTKDLLGQVLAEAGPT--------IAPIESYNSEVGVPLTV-----CRIEPTTEYL 156 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + AS G + G N+G H+ +QQ + K E LP + Sbjct: 157 VAEMGASGPGHIAYLTAIAPPRVGIVLNVGSAHLGGFGSQQGIADTKA-AIVEGLPADGL 215 Query: 244 AIIYADDAYSKEVMKRAH-----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 A++ ADD + +R + R SV + + L + V Sbjct: 216 AVLNADDPLVAAMSERVTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVR 275 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGT 351 + + G NAL +G+D+A + L + + R E Sbjct: 276 GQGGTERHPVHLRVRGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRWRMEVTER 335 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIAL 407 I Y S+ L +R + GR V G + +G+ A Sbjct: 336 PDGVMVINDGYNANPESMRAALTALRDMAHGRRTWAVLAGMLELGPDSAARHREVGRHAA 395 Query: 408 DLADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 ++ ++ + P E + P I + EA + L QDV++ Sbjct: 396 EVGVDVVLVVGDTAAPIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVL 454 >gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM 13965] Length = 610 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 9/211 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E+ S S ++ G +FVAI G + DG F +A+ +GA +V Q + Sbjct: 25 VGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGARVVVA-----QQPPGQPLPPG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--QRSGLSSFQI 147 L V R LS A+ YG ++ V T + + +G+ + I Sbjct: 80 VSWLQVPCARSALSRLAANRYGHPSRRLVVVGVTGTTGKTTTTLLLHHLLSATGIPAGLI 139 Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G LTTP P+ L + L ++ G +E SS G DQ R+D + Sbjct: 140 GSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQGADQRRVDDVAFDL 199 Query: 207 GSFTNLGR-DHIDYHQTQQAYFNAKMRLFEE 236 G TNL +H++YH T + Y AK R Sbjct: 200 GVVTNLAPLEHLEYHPTYEDYAAAKGRFVAM 230 >gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae 670-6B] Length = 457 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 80/485 (16%), Positives = 157/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L + K +T V Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] Length = 456 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 149/489 (30%), Gaps = 73/489 (14%) Query: 10 DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + ++ L ++ + + +S DSR+I +F+AI G DGH F+ + + +G Sbjct: 7 NINTILGNLKNSENLKNQSQTFKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A+V+ + P +V NT + A ++ +TG+ GK++ Sbjct: 67 KAVVI-----RDGMQHLLPEKFPYWLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTT 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + ++ ++ G +I T + T + +E Sbjct: 122 TKEMMGEVLKQLG----KIKLTQLNYNNEIGVGRTILDS-----------DFKDKILIIE 166 Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 GL Q + + TN+G HI +++ AK + + L P I Sbjct: 167 MGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENITYAKCEITKYLKPSGVVIIP 226 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D + + K +V + K + K I + S+ +D F L Sbjct: 227 ANDLFLEETLKKNWSGRIIKVDLLDINQKVDSINKKNLIGFFNRSNNSIIIEDKLFEISL 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G +N L + GI+ + + Y + Sbjct: 287 KGFHNAFNFLFVYAVAKEFGIEFKDTNKFNFLTLDGRNKIIKSKKTVIYDET---YNASP 343 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 SL+ + N+ + ++ + K+ +L D + Sbjct: 344 ESLKACIINLLNNPNNHFLIFGSIQELGSKSKKYH-----KELFDFIV------------ 386 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTA----------------------IEMLNKQDVLVV 464 I I +R + I A + K D ++V Sbjct: 387 ------KSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGITINKYTKKGDFILV 440 Query: 465 AGKGHETVH 473 KG Sbjct: 441 --KGSRNWQ 447 >gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] Length = 474 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 150/413 (36%), Gaps = 29/413 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ ++ ++ I+ +++D+R++ +FVA+ G D HLF+ A Sbjct: 1 MIRLTLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDNA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122 I+ GA+A++V A + ++VV +TR L ++ + K N +A+TG Sbjct: 61 ISTGAKALLVEQASD---------HDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK++ + + + + T+ + LT + Sbjct: 112 SNGKTTCKELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLL---------RLTQNTRF 162 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A+ G + ++ N+ H++ + ++K ++ L + Sbjct: 163 AVLELGANHPGEINYTAQLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGT 222 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + D + + C + + K Sbjct: 223 AVVNLDADFSQTYLSQLQAQGQCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPIC 282 Query: 303 ------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +PG+ V NAL A + +A+G V + L +L V GR + N Sbjct: 283 TGTQSISLKIPGQHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVNDFLT 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407 I Y S S++ + + ++ + +++ G G + + +G+ A Sbjct: 343 IIDDTYNANSASVKAAINVLCATSTKQALILSDMGELGTHTELEHQKVGEYAA 395 >gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS455] Length = 456 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEKRVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASNSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHKAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 77/480 (16%), Positives = 158/480 (32%), Gaps = 52/480 (10%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + ++ + + +S DSR I +F+AI G DGH F+ + + +G Sbjct: 6 SELKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 +++V+ + ++ + P VV++T + A K I+A+TG+ GK+ Sbjct: 66 VKSVVI-----KKGMQKSLPIDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + ++ ++ G + T + + Sbjct: 121 TTKEMMGEVLKKLGRIKLSYSNFNNEIGVGLTILDTDVE---------------DKVLVL 165 Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E GL Q + + TN+G HI +++ A + L + I Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYA-KCEISKFLNPKGVVI 224 Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I A+D+ +E +K +F + +N TIS++ F+ Sbjct: 225 IPANDSLLEETLKEFWKGRVIKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFE 284 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F N L A G+ +GID + + + + + + Sbjct: 285 ISFGGF--HNASNFLFAYGVAKELGIDFSSFNKFNFASLGGRNK---ILKSVKTTIYDES 339 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y + S++ +K + +FG +G+ + +N Sbjct: 340 YNASPESVKACIKTLLE-KPRNQFFIFGSMQ--------ELGEESEKYHKEIFNLINNSD 390 Query: 422 SEDP--------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 E E+I A + F+ N + + + K D +++ KG Sbjct: 391 IEKCLFICDKKNERIYANYLKDNKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRCWQ 448 >gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK115] Length = 456 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 159/481 (33%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G L P Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E + L G + + + + + + Sbjct: 163 HLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPAD-- 220 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K + + G + C K ++ Sbjct: 221 -------------------KIVNEFLPADCKLVRFGPDADIFLTCLEERKDSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + G+ A + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIASYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467 TD +D E + EI G + K + E ++ A+ L D +++ K Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 428 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 72/471 (15%), Positives = 167/471 (35%), Gaps = 49/471 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++++ + +I V DSR +Q G +F AI +G+ +I + +GA Sbjct: 2 KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 57 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 ++ + ++ ++ V++T K + A + ++A+TG++GK++ Sbjct: 58 ALVIADN---------YKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 108 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + +++ +G +N + P I L + + Sbjct: 109 TKDMIYSVLSQKYVTAKTMGNL--------NNHIGVPFTI-----LQLDEKCEAAVLELG 155 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G ++ G TN+G H+++ +T++ F AK L + + + Sbjct: 156 MSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVFGDD 215 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +K + + +S E ++ + L G Sbjct: 216 PFLKDLNGIKVGYENNNNYQIKNFTDSDEG--------------LSFEMEEKKYTVSLNG 261 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N +A + +G+ + L+ L + P RF+ + + A + Sbjct: 262 KHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKIEKENIIYINDAYNASPISV 321 Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + + I V G G+++ + + A + I TD + Sbjct: 322 SFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEKA-----LIIHTDKIYLYGER 376 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 ++I G I E I+ +E + + +++ G +G + I+ Sbjct: 377 MAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEII 427 >gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 456 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I G +FV + G + DGH FI A GA A + P ++ Sbjct: 31 FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 79 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 V++ A+ K ++ AVTG++GK++ + Q+ + L+ G Sbjct: 80 VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 134 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +N + P +G + +E L L + Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 184 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 + AK +L E ++ D + G Sbjct: 185 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPENQTVV-------RFG 237 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I K +T + P+ G++ NA++AA + + G+ A + + Sbjct: 238 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALKEGVSEAAIRD 297 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391 E L + R E+ ++ + Y ++ +IL+ TI +GR + V Sbjct: 298 SFETLQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357 Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442 G++ M ++ D+ D I + ++ +++ E+ Sbjct: 358 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E L +QD +++ KG Sbjct: 416 DQFEDMVKQVKESLKEQDQILI--KG 439 >gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] Length = 469 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 32/400 (8%) Query: 27 ERKINEVS-SDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +N + +S+ IQ G +F+A+ DGH F+ A+A+GA+A++VS Sbjct: 20 NVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDALARGADAVIVSKLIDN----- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLS 143 +N I++V+NT LS A+ + + +TG+ GK+S + ++ + Sbjct: 75 --NTNDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTHYKT 132 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + + S + + S G Q + + Sbjct: 133 FASRKNFNNLLGMLL-------------NLASVPINTEYAIFELCTRSPGELQKLVKILP 179 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260 L TN+ H ++ + + AK +F L+ K I + + K Sbjct: 180 LNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYINKLG 239 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 N + I A + K + I+ G D F + G Q +N Sbjct: 240 INNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAAVML 299 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIR 377 + I+ V E + L GR + N +D Y S++ L + Sbjct: 300 VSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLD 359 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414 I + R + + G G+ + + I Sbjct: 360 QIKAKRKVAILGDMLELGNNTKEHHLNLVTYIKKYNIHVI 399 >gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC0288-04] Length = 457 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 79/485 (16%), Positives = 158/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 I+ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLILAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 477 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 95/474 (20%), Positives = 164/474 (34%), Gaps = 44/474 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + E+ + P+ + +S DSR + G F AI G+K DGH F AIA Sbjct: 3 LLWTVQEMTEAMDGRPLGNLPDGVTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAAIAT 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +VV+ A A R P++VV++ L + I+A+TG+ GK Sbjct: 63 GAALLVVAEA----KLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +S +++ + SG + P+ LA+ + + Sbjct: 119 TSSKEMLRRALEPSGEVHASAASFNNHWGV----------PLTLARMPA-----SAQYGV 163 Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 E + D+ R + ++ T + H+ + AK + E ++ Sbjct: 164 FEVGMNHPDEIRPLVKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVL 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + ++ +S + + + +VL+ G K L + + +T + D Sbjct: 224 LNRDNEKFSWLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVK 283 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYV 360 PG V NAL G G D A L + G R E I Sbjct: 284 IGAPGRHLVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDE 343 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413 Y S+ L+ +R GR I V G + ++ R + + AD+ Sbjct: 344 SYNANPASMRAALELLRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMV 403 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVV 464 + SE + + +E R A A +L DV++V Sbjct: 404 CL----SGSE-----MKALRDELGNEVETVYRDTADDLADHLKNVLRDGDVVMV 448 >gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Streptococcus mitis NCTC 12261] Length = 457 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIEIAFENGAAVTLSEKKVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D +++ +V+ G + L+ I K +T Sbjct: 209 MSSNSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLIERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Pedobacter sp. BAL39] Length = 433 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 121/360 (33%), Gaps = 26/360 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I +F A+ G+K + + F QA+ +GA ++ ++ Sbjct: 17 VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIID--------DQQYHTDERC 68 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V + L A + ++ +TG++GK++ ++ I + G + Sbjct: 69 ILVPDVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNN 128 Query: 153 ISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T I + + + + S+ +GL TN Sbjct: 129 HIGVPLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGL--------------ITN 174 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+D + K L+ L ++ A I D+ Y E+ A + Sbjct: 175 VGMAHLDGFGGFEGVKKGKAELYAHLKQQQGKAFINNDNPYLLEMAHTAQLSDIVYYGSE 234 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + +++ +G +F L G + N L A + + Sbjct: 235 RSNTISGALN--STDPFLELSWQKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQ 292 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + L R + T Y +S+ LKN+ ++ + +V+ G Sbjct: 293 INKGLSGYAPQNNRSQLTKTEHNTVICDF-YNANPSSMNAALKNMDSLHAANKVVIIGDM 351 >gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33300] gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 433 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 66/390 (16%), Positives = 137/390 (35%), Gaps = 32/390 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R+I G +F A+ G +G+ F QA+ GA +++ A +D Sbjct: 16 VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDG--------RY 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN + L A+ ++ VTGT+GK++ + + + G + Sbjct: 68 ILVDNVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLN- 126 Query: 153 ISSFAQDNRLTTPSP---IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + L + I + + + + + +HGL Sbjct: 127 -NHIGVPLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGL--------------I 171 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 +N+G+ H++ + + K L++ L + AD+ + E+ + Sbjct: 172 SNVGKAHLEGFGSFEGVKKTKGELYDYLQNHNGTLFLQADNPHLNEMAATRKISEVVTYG 231 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 I + + + + L G + N L A + + G+ + Sbjct: 232 FAETNDVIGKLLKADPLLQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSA 291 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387 + +E+ R + T Y ++S+ L NI I + R +++ Sbjct: 292 EQINTGIERYTPKNNRSQVTKTEHNTIIADY-YNANASSMAAALDNIEVIDASRKVIILG 350 Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIV 415 F G + D ++ + AD I Sbjct: 351 DMFEMGDESDAEHEKVVQRAKSIGADRLIF 380 >gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] Length = 448 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 162/453 (35%), Gaps = 53/453 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +++ E+ S+ +I V DSR +Q G +F AI +G+ +I Sbjct: 21 MK---ILFNILDEIFGIKSVVETN----EIGHVVMDSRKVQKGDLFFAI----NNGNNYI 69 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + +GA +V + ++ ++ V+NT + + A + I+A+ Sbjct: 70 EDVLNKGAALVVADN---------YKGNDKRVIKVENTVESMQKLAQKYREALDIKIIAI 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + +++ +G +N + P I + ++ Sbjct: 121 TGSNGKTTTKDMMYSVLSQKYVTAKTMGNL--------NNHIGVPFTILQLDSKYEVA-- 170 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + S G + K G TN+G H+++ +T++ F AK L + + + Sbjct: 171 ---VLELGMSGFGEIDLLSNIAKPDIGVITNIGDSHLEFLKTRENVFKAKTELIKYITKE 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D +++ + + K + ++ + +++ GK Sbjct: 228 NLIIF---GDDPFLKILDGIKVGYGDNNNYQIKNFMDSDKGLSFELDENKYEVALNGK-- 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 NA +A + +GI + L+ L + P RF+ + + Sbjct: 283 ---------HNCLNAAMAVVIGKKMGIPYEEIKAGLKNLELTPMRFQKIEKENIVYINDA 333 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRP-IMGKIALDLADIAIVT 416 A + + + IVV G G+ + I+ K D + Sbjct: 334 YNASPISVSFSLETFDKLYNDTLKIVVLGDMLELGENEIEYHKNILDKALNIHTDKIYLY 393 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 + R + E I F EK +AI Sbjct: 394 GE--RMRKALEYIKENREKITHFTEKEEIKKAI 424 >gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] Length = 470 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 7/128 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +N +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L+V++ + L + ++AVTG+ GK+S + ++ G + Sbjct: 73 SEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132 Query: 147 IGPTSTIS 154 + + Sbjct: 133 VASYNNHW 140 >gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] Length = 458 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 84/443 (18%), Positives = 153/443 (34%), Gaps = 37/443 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + AG FV + G + DGH F+ A QG +A VV+ + + + Sbjct: 33 VCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDSDIP-----VPQSLLH 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VD+T + A + ++A+TG++GK++ ++ G IG + Sbjct: 88 WIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQASIGNNN- 146 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + G + + TN+ Sbjct: 147 ---------NDVGVPLTLLGVDEQHA---AVVVEMGMRGPGEIERLSRCAEPEIAVITNI 194 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G HI +++A AK + L P I D + + RV V Sbjct: 195 GTAHIGRLGSREAIAAAKCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVALVDD 254 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 H+ +N IS+ ++ PL G N ++A + +G+ A + Sbjct: 255 ANDSEHVADDLGDYNPLTGRISLGNDSYNC--PLEGRHNARNFMLAIAVARTLGVAPADL 312 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGC 390 ++ ++ R G +D Y + ++ L + GR V G Sbjct: 313 VQLKVEVPGGRNR-----KRQIGSLTILDETYNASPEAVFAALDLLAA-QPGRRFAVLGT 366 Query: 391 GGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 + R ++ A D +V + K ++ P F + Sbjct: 367 MLELGTDSVGLHRAVIDHAATLNLDGLVVVA----TGAEAKAMSDASSRWPQFQQVETPE 422 Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468 +A IE L D +++ A +G Sbjct: 423 QAAEPLIEWLRPGDTVLLKASRG 445 >gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] Length = 452 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 152/391 (38%), Gaps = 31/391 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + K+N V++D+R I+ G +F A+ G + D H F+ A GA A +V + Sbjct: 14 LQGDDLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVDREQDSFES 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + + V ++R+ L A + LAVTG +GK++V + Sbjct: 74 A---------VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMAAAM------ 118 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G +T +F D + P+ L + + + + A++ G Sbjct: 119 --LGDGTLATHGNFNNDVGV----PLTLLRLRAEHR---FAVIELGANAPGEIAWTSSLT 169 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN+ H++ + Q +AK +F P AII DD+++ ++A Sbjct: 170 RPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTPGGQ-AIINNDDSFADFFAEKARA 228 Query: 263 AG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG RV L ++ + ++ PLPG QV NAL+A Sbjct: 229 AGLTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMAC 288 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A+G++ VL L L VPGR G + Y S+ + + Sbjct: 289 AAVRALGVNLPQVLPRLAALKPVPGRMHIQAAG-AGAVVDDTYNANPGSVRAAIDWLAAQ 347 Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408 + +++V+ G G + +G+ A Sbjct: 348 PAPQMLVLGAMGELGPQADSLVEELGEYARQ 378 >gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus pyogenes NZ131] Length = 463 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 74/481 (15%), Positives = 157/481 (32%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + ++++ + + ++ + DSR I G +F+ + G + DGH FI Sbjct: 1 MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A GA A P L+V++ K A K +++AV Sbjct: 56 DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKTFQKLAHYYIDKMRVDVIAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+S + + + + G P + Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + +E + RL A+ ++ Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +I D + G + +K +T + Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG++ NA+VAA + + + ++ L+ + + R E+ + + Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323 Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413 Y ++ +IL+ I G+ I V + + + ++ L D Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383 Query: 414 IVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467 + D+ + + ++ +++ +H E+ ++ EA+ ++ LN D +++ K Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKA-EQEDQFEAMAQYVQNILNPFDQILL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 440 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 133/396 (33%), Gaps = 46/396 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + Q + +N++ DSR I+ G IF+ + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA L+VD+ A K ++ Sbjct: 54 FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVI 102 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L P + Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNN-EIGLPYTILHMPEDTEKLVLEMGMD 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + + L L G + + T Sbjct: 162 HPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENIAKGKMGITA--------------- 206 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A + ++ ++ G G+ + + K+ +K+++T Sbjct: 207 -----GLHGELIAPADPIINAFIPENQKISRFGLPGEDLFITKLI--EHKERLTFETNFL 259 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+PG++ NA++AA + + G+ A + L+++ + R E+ + + + Sbjct: 260 DESITIPVPGKYNATNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRTEWNKSKNGADLL 319 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391 Y ++ +IL+ + I +GR I V Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADM 355 >gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] Length = 471 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 80/406 (19%), Positives = 142/406 (34%), Gaps = 26/406 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +FVA+ G + DGH ++ QGA ++VS + ++ S Sbjct: 31 VVIDSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGF 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V D+ L AS ++A+ G++GK++ V + G + Sbjct: 91 IVTDDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASVLATGFTVQMSQGNRNN 150 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P G+ V V + G + + G TN+ Sbjct: 151 HLGVPLTLLQLRPD-------------TGIAVVEVGINHPGEMEELTAIARPTHGLLTNI 197 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G +H+++ A+ +LF L A + D A + Sbjct: 198 GHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNG-DDSRLRAAGEALEGPVIYGTADL 256 Query: 273 QGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G+ + + + + + + G+ V NA+ AA + + G+ + Sbjct: 257 PGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHNVINAVAAAAVGLHFGLPLSR 316 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFG 389 + E LE L PG +S G RI D Y S+S+ + + + + G+ I V G Sbjct: 317 IREGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMRLAIDALCDLPCEGKRIAVLG 376 Query: 390 CG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE 431 G + +G+ I D+ V E I E Sbjct: 377 DMLELGAAGDVEHESIGRYIHGSRVDLLYV-----YGEKARLICRE 417 >gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Maricaulis maris MCS10] Length = 474 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 80/451 (17%), Positives = 165/451 (36%), Gaps = 43/451 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S D+R +Q G +FVA+ + DGH F+ A+ +GA A +V + + Sbjct: 31 VSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAMEKGASACLVERGDTGVE-------- 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + + L + + +AVTG+ GK+SV + + + SG + + + Sbjct: 82 -PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTSVKEALAAVFRSSGPAHWSVKS 140 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + P+ LA+ G + + G + ++ Sbjct: 141 YNNHWGV----------PLTLARMPRD---TGRAVFELGMNHAGEIRDLSSLVRPHVALI 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267 T + H+++ + +A +A + L ++ AI +DD ++ + + A ++ Sbjct: 188 TRIAPAHLEHLGSVEAIADA-KSEIFDGLEQDGVAIYPSDDPLAERIARHARHSCAAFLL 246 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 I +++ + + +V G F G +NA G+ Sbjct: 247 DFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFAAAAGAGL 306 Query: 328 DSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----T 380 D+ V E L + PGR + G +D A+ +N + M Sbjct: 307 DARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAALGAADPGP 366 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I V G + + + ++A LA +++T K + + Sbjct: 367 DGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGR-----RMKHLHDALPKTV 421 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + ++ DV+++ KG Sbjct: 422 RAGYAQDAAGGLEQVKSLVRSGDVVLI--KG 450 >gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia neofelifaecis NRRL B-59395] Length = 438 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 93/471 (19%), Positives = 150/471 (31%), Gaps = 50/471 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L + + + ++ S DSR + G +FV IV + DGH FI Sbjct: 1 MRL---LASQIAAATGGT----LHGPDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P A+ GA + A + V +T + L+ + P +++ V Sbjct: 53 PSAVQAGAPVYLTDRAPD-------PALGATAVQVADTAEALADLGRFVRAGLPGSVVGV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + +G T ++ + P+ L A Sbjct: 106 TGSVGKTSTKDLL----------AGVLGTTFRTAASEKSFNNELGLPLTLLGAPDD---T 152 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A G G T + H++ + AK L E LP Sbjct: 153 EAVVLEMGARGVGHIAQLCSIASPTVGVLTRVEAVHLEMFGSLDDVAQAKGELVEA-LPA 211 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ AD + R V V + T+ Sbjct: 212 DGLAVLNADHPVVAAMTSRTSARVL-TYGVDPGADVRATDIVLDDELRASFTLHSPWGTT 270 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 GE QV NAL AA IG+ + E L ++ R E T + I Sbjct: 271 AVRLGARGEHQVSNALAAAAAGGGIGVPIEKIAEGLLGANLSGLRMELSTTAAGVTIIND 330 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ L + I +GR V G GD + A+ L + ++ Sbjct: 331 AYNANPTSMAAGLSALARIDAGRRFAVLGTMAELGDDSAAAHREVADQAVALG-VTVIAV 389 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 D P G A+ A+ L D ++V KG Sbjct: 390 DEP-------------AYGAGVTHVSGVDGAVD-ALGDLRSGDAVLV--KG 424 >gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 426 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 124/364 (34%), Gaps = 29/364 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + ++S+ ++ G IF+A+ G DG+ F +AI+ GA +V Sbjct: 4 SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCRK------- 56 Query: 91 PILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ VD++ FL A + I+A+TG++GK++ + I R Sbjct: 57 -IIYVDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKN 115 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 L+ P I ++ + + + S IK G Sbjct: 116 NLNNHIGIPLTILSMP--INTQISVIEIGANHEKEIDKMCSI----------IKPDYGYI 163 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ ++ + K+ L+ L + + DD ++ + G + Sbjct: 164 TNFGKAHLEGFKSIEGIIRGKLELYNFLKKNKKVVFVNGDDP-----IQLDKSIGMKRYI 218 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + K+ + N+ + + L G + +YN A + I Sbjct: 219 FSEKEDKKSNVKIKYLWNQVGCDLKSILYVDNTKISSSLIGNYNLYNIASAISIGKYFKI 278 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +E+ R + + + I Y S+ L G I + Sbjct: 279 SLEKIKKAVEEYIPKNHRSQIMNKKNTKIIIDC-YNANPTSMIKALTFFNNNIKGNKIAI 337 Query: 388 FGCG 391 G Sbjct: 338 LGDM 341 >gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK160] Length = 456 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 85/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ L Q+ + DSR I+ G +FV + G + DGH Sbjct: 1 MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A QGA A + + ++VD+ A K ++L Sbjct: 54 FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ + + Sbjct: 262 EQKIDLPVTGKYNATNAMIAAYAALQEGVSDADIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 456 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 87/484 (17%), Positives = 155/484 (32%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I+ +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLMAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK408] Length = 456 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 85/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ L Q+ + DSR I+ G +FV + G + DGH Sbjct: 1 MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A QGA A + + ++VD+ A K ++L Sbjct: 54 FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ + + Sbjct: 262 EQKIDLPVTGKYNATNAMIAAYAALQEGVSEADIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 26/393 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + DSR ++AG +F A+ G + DGH F+ QA+A GA V++ + + Sbjct: 23 VTVAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLA-EVLPGGPP 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 T ++ V +TR+ L+ A + + P ++ +TG+ GK++ + ++ Sbjct: 82 PGTAVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQRFAVLKT 141 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLI 205 G + + P + +E + GL + RL I Sbjct: 142 AGN--------YNTDIGLPLIL-------LDLEDHHQVAVLEMAMRGLGEIARLASIAEP 186 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + + E LP + AI+ A D + + R Sbjct: 187 DIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRVRAMAARTRARVL 246 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324 G G + V + + + + G D LPG V AL AA + + Sbjct: 247 TFGVEG--GADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAVGVV 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383 +G+D+ + L + R E S I Y + S L+ +R + R Sbjct: 305 LGLDADAIAAGLGRARPASLRSEIRQAGSWTLFIDC-YNASPTSTAAALQALRQVAGDRR 363 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413 + + G GD + G+ A D+ Sbjct: 364 AVAILGDMFELGDWAEEGHRRTGQAAARSVDVL 396 >gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV104] Length = 457 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 75/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI +A GA A + + N P ++VD+ A+ K ++ Sbjct: 54 FIERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK72] Length = 456 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 157/481 (32%), Gaps = 55/481 (11%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + L+VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSERPVAEGA----------YLLVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ + + G L P Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKLVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E + L G + + N + + + Sbjct: 163 HLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRENGLLIVPAD-- 220 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 K + + G + K ++ Sbjct: 221 -------------------KIVNEFLPTGCDLVRFGPDADIFLTRLEERKNSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467 TD +D E + EI G + K + E ++ A+ L D +++ K Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILL--K 438 Query: 468 G 468 G Sbjct: 439 G 439 >gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1] Length = 456 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 88/484 (18%), Positives = 158/484 (32%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL D E+ L Q+ + DSR I++G +FV + G + DGH Sbjct: 1 MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FIP A AQGA A + + ++VD+ A K ++L Sbjct: 54 FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K ++ +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDQKDQFEQLTKAVR---EKLTPADQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] Length = 500 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + E + L+ + ++ +D+R I+ G IF+AI G+ DGH ++ A +G Sbjct: 8 SANLTEALKDLNPTFHSDFTQTSKKIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKG 67 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGK 126 A +VS A S+ P LVV +T+ L + +HP ++A+TG+SGK Sbjct: 68 AVLAIVSRAVE---------SDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST 152 ++ + I R + G + Sbjct: 119 TTAKEMLGSILNRIAPTLITRGNLNN 144 >gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP9-BS68] Length = 457 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 79/485 (16%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTVIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 448 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 72/471 (15%), Positives = 167/471 (35%), Gaps = 49/471 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++++ + +I V DSR +Q G +F AI +G+ +I + +GA Sbjct: 22 KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 77 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 ++ + ++ ++ V++T K + A + ++A+TG++GK++ Sbjct: 78 ALVIADN---------YKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 128 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + +++ +G +N + P I L + + Sbjct: 129 TKDMIYSVLSQKYVTAKTMGNL--------NNHIGVPFTI-----LQLDEKCEAAVLELG 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G ++ G TN+G H+++ +T++ F AK L + + + Sbjct: 176 MSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVFGDD 235 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +K + + +S E ++ + L G Sbjct: 236 PFLKDLNGIKVGYENNNNYQIKNFTDSDEG--------------LSFEMEEKKYTVSLNG 281 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N +A + +G+ + L+ L + P RF+ + + A + Sbjct: 282 KHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKIEKENIIYINDAYNASPISV 341 Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + + I V G G+++ + + A + I TD + Sbjct: 342 SFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEKA-----LIIHTDKIYLYGER 396 Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 ++I G I E I+ +E + + +++ G +G + I+ Sbjct: 397 MAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEII 447 >gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 461 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 71/428 (16%), Positives = 141/428 (32%), Gaps = 48/428 (11%) Query: 1 MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + +N++ DSR+I G +F+ + G + DGH Sbjct: 1 MKL------TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA A A S P ++V+N A K +++ Sbjct: 54 FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK+S ++ + ++ + G P + Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN----------YNNDIGLPYTVLHMPEDTE 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + L R+ + T +G H+ Y +++ A+ ++ Sbjct: 154 KIVLEMGQDHMGDIQL-LSRIA--RPHIAVLTLIGEAHLAYFGSREKI--AEGKMQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + +I D + + G L K +T Sbjct: 209 MDSNGILIAPGDPILDPYLPDSQMVI-------RFGDHQELVVEDIKECKDSLTFRTNVL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G++ NA++AA + + + ++E LE + + R E++ + + Sbjct: 262 PRPVTIPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALEAVKLTRHRTEWLKAANGADLL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411 Y ++ +IL+ I +G+ I V + + ++ D Sbjct: 322 ADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRID 381 Query: 412 IAIVTDDN 419 + D+ Sbjct: 382 QLVFYGDD 389 >gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M334] Length = 456 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + + DSR I AG +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAAVTLSEKEIA----------NHPYILVDDVLTAFQSLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + S + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTSYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEIIDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGINDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47368] Length = 457 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 79/485 (16%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] Length = 453 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 163/464 (35%), Gaps = 41/464 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ ++ + + +I EV +D+R + AG +FVA+ G + D H F A V Sbjct: 8 VLAEILSAELIGADSQIIEVKTDTRKVTAGCLFVALKGERFDAHDF---------AAAAV 58 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ S + + P LVV +TR L A+ + + P ++++TG+SGK+SV Sbjct: 59 AAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMT 118 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I G + G + P+ L + + A+ G Sbjct: 119 AAILSECGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHIG 165 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + A NL H++ + AK +F L I ++ + Sbjct: 166 EIAYTSALARPQAALINNLAAAHLEGFGSLAGVAQAKGEIFTGLPTDGVAIINADNNDWP 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G +V N Q + + + PLPG V Sbjct: 226 HWQSMLDGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVA 285 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA L +++G V + L +L VPGR + + + Y S+ Sbjct: 286 NALAAAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAANKLLLDDSYNANVGSMTTAA 345 Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI----------VTDDN- 419 + + + R++VV G Q +G+ A D I V N Sbjct: 346 QVLAEMPGYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVASGNG 405 Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNK 458 +D + A + + + KG+R A+ + L + Sbjct: 406 EHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQE 449 >gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfurihydrogenibium azorense Az-Fu1] Length = 433 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 64/450 (14%), Positives = 154/450 (34%), Gaps = 54/450 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL +++N + ++ + DSR +F+ + G DGH +I Sbjct: 1 MRLTDLAKVVEGKILNIE-------EDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ + + + + ++ ++V +T + L A K + ++ + Sbjct: 53 EDALKKWSVGYLTEKPLNFKNG----------ILVKDTYQALKKIA-IYKRKSIDTVVGI 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK+S + + + G P+ LA + + Sbjct: 102 TGSSGKTSTKELLNFVLSNFYKTYATSGN----------YNNEIGVPLTLA---NTPENT 148 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + A G N+ I + K FE ++ Sbjct: 149 HIAIIEMGAGKVG-----------DIDYLNNIVNPDIGVLVSVGHAHVEKFGSFENIIKG 197 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + + + + + I + + I ++ + + Sbjct: 198 KGEIFNTSHYHVLPFDLLNYYKDKLKKFITFGEEGNIKVYDIKIIPEGTTGKVAYKNQVL 257 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+ + N AG+ +G+D L+ L++ + + GR + + + I Sbjct: 258 DLTIPIFNKGIFKNIGAVAGVLYHLGLDPIESLKVLKEFNQIQGRGKIIKIGNL-TIIDD 316 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S++ ++ + I + +++V+ G + ++ R I +I D + Sbjct: 317 SYNANPLSVKNAIETLNEIPTVKVLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFL-- 374 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 E+ + I+ E+ ++ ++ E Sbjct: 375 ---YGEETKYIKQELEG--KKYVLHTDKKE 399 >gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae SP195] gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae ATCC 700669] gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae JJA] gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae TCH8431/19A] gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17570] Length = 457 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 154/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D ++ + G+ L+ + K +T Sbjct: 209 MASGSLLLAPADPIVEDYLPIDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Treponema denticola F0402] Length = 430 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 79/429 (18%), Positives = 151/429 (35%), Gaps = 40/429 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L +L+ L+ + S V DSR+++ +F+ + G +DGH++I Sbjct: 15 MTLDELLTSTGAWLVYESSSSKAFSS------VVMDSRNVKNNSLFIPLRGENQDGHVYI 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPE- 115 A+ GA+ VV Y ++ +A + + + V N K L A K P Sbjct: 69 EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + +TG+SGK++ + I + + G ++ T P+ + + Sbjct: 129 YKIGITGSSGKTTTKEILASIYSKKYNTVSTKGNLNSE----------TGLPLSVFEVRP 178 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + G + A TN+G HI T+QA K +F Sbjct: 179 E---HEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 A+ + + + +K +S ++ + + + Sbjct: 236 FFKDD---ALGFIPECEFTDFLKDVPRGSVFTVSDNDSSLVQKVEDAGVLGS------KI 286 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + + LFPLPG + V NAL+ L G + + LE + + GR + + Sbjct: 287 FYRGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLHGFVTY 346 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLA 410 Y +S++ ++ +I + V+ G D + I+ A Sbjct: 347 FLDC--YNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAKSDYEHKKIIEDALKSNA 404 Query: 411 DIAIVTDDN 419 D D+ Sbjct: 405 DNLYFFGDD 413 >gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter chlorophenolicus A6] Length = 488 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 81/479 (16%), Positives = 143/479 (29%), Gaps = 45/479 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + V +DSR G ++VA G DGH FI A Sbjct: 1 MIAFTAAEIADITKGRLDADPGITPTSVVTDSREATPGSLYVAKPGEHADGHDFIAAAFE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---------HPEN 116 GA +V + D S+ P ++V++ + A+ + Sbjct: 61 SGAVLALVERPAARPDGSSY-----PSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELT 115 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ + + G + G + LT Sbjct: 116 VVGITGSAGKTTTKDLLAGLFASQGSTVAPKGS----YNGEVGVPLTVFQADE------- 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + A+ G ++ D +K G +G H A E Sbjct: 165 --GTRYLVIEMGATGIGHIRYLADMVKPDIGVVLAVGTAHAGEFGGVDNIALA-KGEMVE 221 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTI 293 L + AII DD + R + G G + + + + + Sbjct: 222 GLSADGTAIINLDDDRVAAMRSRTTATVLGFSAEGRGGAAVQALSADTNEHGNPEFDLQL 281 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTN 352 L G N L AA A G+ A + ++ R E Sbjct: 282 PGSDGPQHVASKLIGAHHTGNLLAAAAAAFAAGMSGADIAAGLSKQSAASRWRMERTERA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408 I Y S+ L+ + + GR V G GD + +G + Sbjct: 342 DGVTVINDAYNANPESMRAALRTLADLGRGRRTWAVLGAMLELGDDSIREHTAVGTQVVR 401 Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 L + + +V E + + G + N EA L D+++ Sbjct: 402 LNISRLVVV-----GREARALYVSAVQEGSWGDECLFAENPDEAYELLNAELEPGDLVL 455 >gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae DSM 12333] Length = 474 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 86/483 (17%), Positives = 156/483 (32%), Gaps = 54/483 (11%) Query: 6 LIYKDFPELIN-QLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + +++ V DSR AG +FVA+ G DGH ++ A Sbjct: 1 MIEMTADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRVA 60 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH------PENI 117 GA +V+ + ++VD+ ++ L A + + P + Sbjct: 61 HENGATTSLVTR-------LVPDAGDGAQVLVDDAQRALGDLARHVLARRREVADEPPVV 113 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TG+ GK+S + ++ G+ G + Sbjct: 114 VGITGSVGKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDA---------- 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V + A + G + +GR H+ + A A Sbjct: 164 ---RVVVAEMGADAPGNLTYLTSIAPPDVAVVLTVGRAHLAGFGSVDAVA-ATKSELVSG 219 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SV 295 L A++ ADD + + A + + V + + + Sbjct: 220 LAPGGFAVLNADDERVAAMARLAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTP 279 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSR 354 +G++ L GE V NAL AA + + +GI +A V L P R V Sbjct: 280 DGEEVPVTLALVGEHHVTNALAAAAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDG 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409 + Y S+ LK + I R + V G GD + + +G++A+ L Sbjct: 340 VTVVDDAYNANPESVRAALKALVAIAGRERRSVAVLGEMLELGDSSRDEHDAVGRVAVRL 399 Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461 D +V + R + G + + A L DV Sbjct: 400 NVDKLVVVGEGAR---------AMHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDV 450 Query: 462 LVV 464 ++V Sbjct: 451 VLV 453 >gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae TIGR4] gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae TIGR4] Length = 457 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 77/482 (15%), Positives = 160/482 (33%), Gaps = 57/482 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I +N + ++ +++ ++ + ++ E L D +++ Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILL-- 437 Query: 467 KG 468 KG Sbjct: 438 KG 439 >gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 452 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 85/434 (19%), Positives = 161/434 (37%), Gaps = 32/434 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L++ L + + I VS+D+R I++G +FVA+VG + D H F QA + Sbjct: 1 MITLMLSQLVDVLDAQLIGD-DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQAAS 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++VS A +Q P L+V++T+ L ++ +A+TG+ G Sbjct: 60 AGASALLVSKAVDVQ---------VPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V I + G + G + + P + Sbjct: 111 KTTVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPE-------------DDFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ G + + N+ H++ + A + L S AI Sbjct: 158 ELGANHVGEIAYTTQLVNPDVAMVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLKPGSVAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLF 304 + D + + + + S+ + V + + TI FD Sbjct: 217 VNLDSNGGEHWREVLSDKTVKTFSLSDNSAEYKARNVTMNVNGEASFTIQTPETSFDVKL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G+ V NAL A L + +G + ++ L L V GR E V I Y Sbjct: 277 GIIGQHNVSNALAATALSLELGATTEMIASGLANLSKVKGRVETVDLTDSIRLIDDSYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + +++ + + R +V+ G+ +G+ A ++T Sbjct: 337 SVPAMKAAADLLNSFDGVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLT----FG 392 Query: 423 EDPEKIRAEIIHGI 436 D + I +++ G+ Sbjct: 393 ADTKAI-SDVCQGM 405 >gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 460 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 158/457 (34%), Gaps = 43/457 (9%) Query: 25 WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + ++ V +DSR +G ++VA VG DGH FI AIA GA +V++ Sbjct: 18 GADVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCAIVTN-------P 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139 + ++V++ L L A + I+ +TG+ GK++ I + Sbjct: 71 SIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTAGILAK 130 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + + + LT + + + AS G ++ Sbjct: 131 FAPTVAPVASFN----NEVGMPLTALKADE---------NTRYLVLEMGASGIGHLEYLT 177 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + G ++GR H+ + AK L E + + I+ DD + Sbjct: 178 GLVSPDLGVELSVGRAHLGGFGSVAGLARAKAELVEG-VKENGLVILNLDDPNVAAMETV 236 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318 AH ++G + I+ + V G+ L G QV NAL A Sbjct: 237 AHTPVVYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAA 296 Query: 319 AGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--ILKN 375 +C G++ +V P R V + I Y +S++ + Sbjct: 297 ISICQGFGLELPEIVAALNGMKAASPHRMSIV-ESRGATFIDDSYNANPDSMKAGLAVLA 355 Query: 376 IRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + I V G G+ +G+ + D+ I E ++I Sbjct: 356 KQGEHANQRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLI-----TLGEGAKEIAVP 410 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + F G+ EA++ E + DV+ + KG Sbjct: 411 LTEKTTHFH-AGSVAEAVKLLEEKVVAGDVVFL--KG 444 >gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] Length = 461 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 75/412 (18%), Positives = 131/412 (31%), Gaps = 40/412 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ ++ + + ++ + DSR G +FVA+VG DGH + Sbjct: 1 MLEMTLGKIAKVVGGTVAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDY----- 55 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A GA A++ S P +VV + L A+ + + +LAVTG+ Sbjct: 56 AAGAHAVLGSRPTEA-----------PTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQ 104 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+ ++ +I +G + G + P Sbjct: 105 GKTGTKDYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPE-------------TRYLV 151 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + A G +H + + N+G HI ++ + A L E A Sbjct: 152 LEMGARRIGHIKHLCEIAPPDVAAVLNVGTAHIGEFGSRDSIAFA-KGEIVAALQPEGTA 210 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ A D E+ R + I + + + Sbjct: 211 VLNAGDPLVAEMTSRTRARVLTWGP--DDADVSERGSEVDDLGRPSFEIGYDDEWYPVRL 268 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYA 363 G Q NAL AA + +A+GI A + L P R E + Y Sbjct: 269 QQSGLHQAQNALAAATMALAVGIPLADIAAGLSAATASSPMRMEVHERADGLIVVNDAYN 328 Query: 364 HTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409 S+ L+++ I R + V G G +G+ A L Sbjct: 329 ANPASVVAALESLAVIGRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARL 380 >gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 432 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 30/365 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR G +F A+ GN +G+ F QA+ QG +V A + Sbjct: 16 VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGG------DERY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++ L A + ++ VTGT+GK++ + + + G + Sbjct: 70 ILVEDVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIAGS 208 + +P H + + + G Sbjct: 130 HIGVPKTLLELSPD-----------------HTIAVIETGANHLGEIKALAEIVDPDFGL 172 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H++ + + K L++ L K I D K + H Sbjct: 173 ITNVGMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQICYGSP 232 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + + E ++ L G + + N L AA + G++ Sbjct: 233 CDEVLSVEGEVLECAPFLKFRWRPAGGEWQEV--QTGLIGAYNMQNMLAAATIGRTFGVE 290 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L R + + + Y S+ ++N R + R +V+ Sbjct: 291 VDSINRALAAYEPKNNRSQLM-ETDDNKLLVDAYNANPTSMRAAIENFRDMKVERRMVIL 349 Query: 389 GCGGD 393 G G+ Sbjct: 350 GDMGE 354 >gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13] Length = 427 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 33/399 (8%) Query: 27 ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ +++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++VDN K L A I+ +TGT+GK++ + + Sbjct: 68 --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + T + + + AS G + +D + Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+GR H++ + + K L++ + + I ++ Y + + K G Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G +V + +GK + G + + N L A + Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 I + + + R +F T I Y +S+++ L N T+ Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTE-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419 ++ G + + ++ + D + ++ Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379 >gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus obscurus DSM 43160] Length = 464 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 79/443 (17%), Positives = 139/443 (31%), Gaps = 40/443 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--T 90 V+ DSR + G +FVA+ G + DGH F + ++A + + T R + Sbjct: 29 VTVDSRAVAPGDLFVAVPGERVDGHDF------------LTAAAAAGAVAALTTRPDGAL 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VVD L A+ ++ + + +TG+SGK+S + Q+ +G + Sbjct: 77 PCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSSGKTSTKDLLGQVLATAGATVSPP 136 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGI-KLI 205 G + LT + +E S G RL + + Sbjct: 137 GS----YNNDIGLPLTVLDADE-----------DTRFLVLEMGSRGRGHIARLCRVARPD 181 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G N+G H+ + AK L E LP E A++ ADD + R Sbjct: 182 VGVVLNVGSAHLGEFGSADGIAVAKGELVEA-LPAEGTAVLNADDPRVIGMAPRTRARVV 240 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + ++ + L + A A Sbjct: 241 TTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAAGAALAAG 300 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 A+ R E + + Y S+ L + + + R + Sbjct: 301 MAPDAVAAALSAAEPRSRWRMEVTRRDDGVTVVNDAYNANPESMRAALAALAGLPARRRV 360 Query: 386 VVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 V G G + +G+ D+ + + + A G G + Sbjct: 361 AVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADGALAAGAREG-EGAVR 419 Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464 +R A E+L DV++V Sbjct: 420 VPDRAAARELLTEVLVPGDVVLV 442 >gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] Length = 478 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 76/398 (19%), Positives = 129/398 (32%), Gaps = 31/398 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S DSR I G + AI G+ DGH F+ A+ G V+ Q A + Sbjct: 27 INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGLAVI-----AQSQRAKFSGD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV + L A + I+AVTG+ GK+S ++ + Q G + Sbjct: 82 LPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTKEALRTVLQAQGATHVSAAS 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + + G + + ++ Sbjct: 142 FNNHWGVPLSLARCPQDA-------------KFAVFEIGMNHAGEIEPLVKLVRPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+++ +A +AK +F L AI+ D++ + +RA G + Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTG-LEPGGAAILNRDNSQFARLAERAKACGVARIV 247 Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + V V V D + + G N+L +G Sbjct: 248 TFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAASTLVGG 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---TS 381 D AL L GR GG + Y S+ + + + Sbjct: 308 DLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRVAIGPQ 367 Query: 382 GRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIV 415 GR I V G + R + I + D+ Sbjct: 368 GRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFC 405 >gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 20_3] Length = 427 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 33/399 (8%) Query: 27 ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ +++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++VDN K L A I+ +TGT+GK++ + + Sbjct: 68 --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + T + + + AS G + +D + Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+GR H++ + + K L++ + + I ++ Y + + K G Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G +V + +GK + G + + N L A + Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 I + + + R +F T I Y +S+++ L N T+ Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTE-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419 ++ G + + ++ + D + ++ Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379 >gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK150] Length = 456 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 86/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ L Q+ + DSR I+ G +FV + G + DGH Sbjct: 1 MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A QGA A + + ++VD+ A K ++L Sbjct: 54 FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAKYYLEKMQVDVL 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + Q+ S + G + L Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + A+ ++ Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ +I D E + G + K ++ Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++AA + G+ A + + +L + R E+ + + Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELKLTRNRTEWKKAGNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y ++ +IL+ TI GR + V + + + G + L + IV Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380 Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464 TD +D E + EI G + K + +A+R E L D +++ Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPTDQILL 437 Query: 465 AGKG 468 KG Sbjct: 438 --KG 439 >gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus influenzae 10810] Length = 457 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 88/466 (18%), Positives = 159/466 (34%), Gaps = 31/466 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L L + ++ E+++D+R + +F A+ G K D H ++ QA+A Sbjct: 1 MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVA 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 Q A ++ + P LVV +TR L A L K +A+TG+SG Sbjct: 61 Q--------GAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V I Q + S + T+ + LT + Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ + ++ A N+ H++ + AK ++ L Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 A + + GK +K V T+ + D P Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GE V NAL A L + +G A V LE+ V GR + + Y Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338 Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 +SL + +++ + I+ V G+ +G+ L ++ +V Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394 Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I ++ E + + + L + +VV GKG Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438 >gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter sp. FB24] Length = 491 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 66/476 (13%), Positives = 131/476 (27%), Gaps = 36/476 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + V +DSR G ++VA G DGH FI A Sbjct: 1 MIAFTAAEIAEITDGRLAADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAAFE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116 +GA +V + P +VV + + A+ + Sbjct: 61 RGAVLALVEREGPDGAGAPY-----PAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFT 115 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TG++GK++ + I G + G + + + + + + Sbjct: 116 VIGITGSAGKTTTKDLLAGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGA 175 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + S G+ G N+ + + A + L + Sbjct: 176 TGIGHIRYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDD 235 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + + +S + A R + V ++ + + Sbjct: 236 GRVAAMTSRTTANVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRS 295 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L A G IA + + R E Sbjct: 296 RLIGAHHVTNLLAAAGAAYAAGVTGERIAASLSTQTA--------ASRWRMERTERPDGV 347 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-- 409 I Y S+ L+ + + GR V G GD + +G + L Sbjct: 348 TIINDAYNANPESMRAALRTLADLGRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNI 407 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + + +V E + + G + + EA L D+++ Sbjct: 408 SRLVVV-----GREARSLYVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVL 458 >gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] Length = 818 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 74/372 (19%), Positives = 136/372 (36%), Gaps = 24/372 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 I Q +Q+ E +I + DSR I +F AI G DGH F+ A G + V Sbjct: 10 ILQAKSPNLQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAGVRSFV 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ L F L+V+N + L A+ + P ++ +TG++GK++V + Sbjct: 70 VTKVPELSQFPEAN-----FLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEW 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + Q+ S + ++++ P + + + S Sbjct: 125 LFQLLYPHYAI--------IRSPRSFNSQIGVPLSV-----WGIQAQHELGIFEAGISRK 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + I+ G FT LG H + ++ K+ LF + I DDA Sbjct: 172 GEMGNLANIIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFA----EVDLLIYRRDDAT 227 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +K + +++ K N + + + P + Sbjct: 228 VHRAIKDLGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASI 287 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ + + +G+ S + E + +L V R E + + I Y +SL + Sbjct: 288 ENAIHCWAVLLHLGLKSEEIAERMAQLEPVAMRMELLDGRNNCLIINDTYNADLSSLRLG 347 Query: 373 LKNIRTITSGRI 384 L+ +R GR Sbjct: 348 LQWMRQHEHGRN 359 >gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP19-BS75] gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CGSP14] gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae INV200] gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP14-BS292] gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae SP-BS293] gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS458] gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS457] gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae BS397] Length = 457 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 77/482 (15%), Positives = 162/482 (33%), Gaps = 57/482 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I +N + ++ +++ ++ + ++ E L D +++ Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILL-- 437 Query: 467 KG 468 KG Sbjct: 438 KG 439 >gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Xanthobacter autotrophicus Py2] gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xanthobacter autotrophicus Py2] Length = 493 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 134/399 (33%), Gaps = 29/399 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + +S DSR + G F AI G DGH ++ +A+ GA VV+ D + Sbjct: 41 HDVTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVAR-----DRADGFP 95 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ P+LVVD+ L+ A + I+AVTG+ GK++ ++ G + Sbjct: 96 ADAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTKEALRIALGADGETHASA 155 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + P+ LA+ + + G + ++ Sbjct: 156 ASYNNHWGV----------PLSLARFPREAR---YGVFEIGMNHPGEITPLVRLVRPHVA 202 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + HI + + +AK +F+ + P + + + + + A R+ Sbjct: 203 IVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARGISRI 262 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIG 326 +S G K A+ + V ++ F +PG V N L G Sbjct: 263 VSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAAKLAG 322 Query: 327 IDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380 D AL L L PGR + + + Y S+ L + Sbjct: 323 ADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRTPVGP 382 Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 GR I V G G + + + I D Sbjct: 383 RGRRIAVLGDMLELGPDGEAHHAGLAEAIVAAKIDQVYC 421 >gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 75/489 (15%), Positives = 152/489 (31%), Gaps = 71/489 (14%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI------NEVSSDSRHIQAGWIFVAIVGNKE 54 MKL I++++ + I + DSR I G +FV + G + Sbjct: 1 MKLT----------IHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR- 49 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 DGH FI A GA A + + N P ++VD+ A+ K Sbjct: 50 DGHDFIETAFENGAVATLSEKEIA----------NHPYILVDDVLTAFQTLAAYYLEKTA 99 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ AVTG++GK++ + + + + G + L Sbjct: 100 VDVFAVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKL---- 155 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +E L L + + A+ ++ Sbjct: 156 -----------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQ 204 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ D + + G+ L+ + K +T Sbjct: 205 IADGMAPGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLVERKDSLTFK 257 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + P+ G++ NA++A+ + + G+ + + + L + R E+ + Sbjct: 258 ANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEWKKAANG 317 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIAL 407 + Y ++++IL+ I G+ I V GD+ M ++ Sbjct: 318 ADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSP 377 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQ 459 D+ DI I ED ++ ++ + ++ E L Sbjct: 378 DVLDIVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAY 432 Query: 460 DVLVVAGKG 468 D +++ KG Sbjct: 433 DQILL--KG 439 >gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] Length = 456 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 92/451 (20%), Positives = 157/451 (34%), Gaps = 42/451 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ VS+D+R I G +F+A+ G D H F+ AI + + + Sbjct: 18 GADVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLA-------PAIAAGATALMVADES 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P +VVD+TR L A+ K ++AVTG++GK++ V I + + ++ Sbjct: 71 KVPTGVPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKEMVAAILKAAFGAA 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + P+ L + + + + G + Sbjct: 131 VLST--------RGNLNNDIGLPLTLLGLRASHR---AAVIEMGMNHPGEIGYLAPIGAP 179 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN R H++ K +F LP A+I ADDAY+ R G Sbjct: 180 TVALITNAQRAHLEGMGDLDEVAREKGSIFLG-LPANGVAVINADDAYAGLW--RGMAGG 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V + G KV + + +S D + +PG NA+ AA C+A Sbjct: 237 RPVRTFGIDNAADVSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAACLA 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 GI V+ LE V GR + + Y +S+ + + T GR Sbjct: 297 AGIPMVAVIAGLEAFSGVKGRLQRRTGKQGAEILDDTYNANPDSVRAGIDVLAA-TIGRK 355 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN-----PRSEDPEKIRAEIIHGIP 437 ++V G G +G+ + D E ++ G Sbjct: 356 LLVLGDMG--------EIGEASGQYHDEIGGYAKSQGIDRLFALGEAAQQAVRNFGEGAK 407 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + I A+ L + ++V KG Sbjct: 408 HYCNVDKLIAAVDK---ELGPETTVLV--KG 433 >gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 511 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 81/477 (16%), Positives = 150/477 (31%), Gaps = 62/477 (12%) Query: 6 LIYKDFPEL--INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ I + + + ++ V DSR + +G +FVA+ G + DGH + Sbjct: 1 MIALSLAEIAEITGGRLDSVDEPDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYATT 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN---------------TRKF 101 AI +GA A++ + + + ++ R Sbjct: 61 AIDKGAVAVLAARPVGVPAIVVEPHGRVEGDGANADIYANDEDGSAAAVVAALSAIARAV 120 Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 A+ + I+ VTG++GK+S + I + G + G +N Sbjct: 121 TQRLAA----EQNLTIVGVTGSAGKTSTKDLIATIFREVGETVAPPGS--------FNNE 168 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + P AL + A G +H + G N+G H+ Sbjct: 169 IGLP-----YTALRCDEHTRYLVAEMSARGIGHIRHLTEITAPRVGVVLNVGTAHLGEFG 223 Query: 222 TQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGK 275 +++ A ++ A++ ADD + + + G Sbjct: 224 SRENIAQAKGELVEALPNAEAGGVAVLNADDPFVAAMAPRTEAKVVYYSTENRRGGAPAA 283 Query: 276 FIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 + + S + + + G QV NAL AA I +G+ + V Sbjct: 284 QYYATDIVLDDVARPSFTLHSPDAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVA 343 Query: 334 EHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVF 388 L R + I Y +S+ + + + R I V Sbjct: 344 AALSGHRLASEHRMDVRTRRDGVTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVL 403 Query: 389 GCGG----DRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 G G D +Q R +G+ + I +NP + A+ GI + Sbjct: 404 GEMGELGSDAEQSHR-QLGEFLAKYHVEHLIAVGENPNCRAMAEAAAQ--QGINTVV 457 >gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] Length = 490 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 88/472 (18%), Positives = 160/472 (33%), Gaps = 43/472 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ KD E + + I E S DSR IFV I+G + D H FI A+ Sbjct: 26 NITIKDIVEACSG--QLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGAL 83 Query: 65 A-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 GA S D N P + V +T + + + + ++AVTG+ Sbjct: 84 KINGATF------TSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGS 137 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + + IG ++ P+ L + Sbjct: 138 VGKTTTREMISTVLASQKKVFQTIGNQNSQ----------IGVPLTL---SHLTREDEIA 184 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + S G + + I+ T +G HI +TQ+ + LP++ Sbjct: 185 VLEIGMSERGQIEKLTNMIRPNVAVVTMIGVSHIAQLKTQENICLE-KMDIVKGLPEDGM 243 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFD 301 + DD + + + V KD + Sbjct: 244 VFLNGDDKFLAPYRGKLSHKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDME 303 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GE V NALVA G+ +G+D + L H + + T I Sbjct: 304 VVLGTMGEHNVRNALVALGVAHQMGLDMKAAAKALVTFHGQR---QQMHTLKSCTLIDDT 360 Query: 362 YAHTSNSLEMILKNIRTIT--SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y + +S++ + + ++ GR I G++++ +GK IA D Sbjct: 361 YNASPDSMKASVSVLSSMEGVKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEV-- 418 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIR-TAIEMLNKQDVLVV 464 E E+I + + K +R +A++ + ++ DVL++ Sbjct: 419 ---AAYGELSEEILKGVEDNNERIVVKHFESR-DALKDYLLTYVHPDDVLLL 466 >gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus curdlanolyticus YK9] Length = 465 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 164/477 (34%), Gaps = 34/477 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + + I+ ++ DSR ++ G ++V ++G DGH F Q++A GA + Sbjct: 2 CGGTLANEQRDSQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWE 61 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + D A P+++V +T L AS + I+ +TG++GK++ Sbjct: 62 EGCPVPDELAEA----PLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDL-- 115 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 ++ +G + A + P+ + + + + + S G Sbjct: 116 --------TAAVLGTIYRVHKTAGNLNNHIGVPLTILQ---LDETIETAVLEMGMSDFGE 164 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + A TN+G H+ ++ AK+ + LLP + + + Sbjct: 165 IELLSTIASPDAAIITNVGDAHMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRE 224 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE-------GKDFDFLFPL 306 + + G ++ G V + + + P+ Sbjct: 225 RLAQIELPEGTELVPFGAAADCQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPV 284 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG V NAL A + G+ +A + + L + + R + V + + Y Sbjct: 285 PGAHNVMNALAAIAVAYRFGVPAAQIRDGLATVTMTGMRIQPVDAFNGAKILNDAYNANP 344 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++ + + +T R VV G + +G A++T P + Sbjct: 345 TAVRAAVDLVAELTGYRRKWVVLADMLELGPEEADLHRGIGAYVTPEKADAVLTW-GPLA 403 Query: 423 E---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + D + E ++ + E L+ D+++V G +G +V Sbjct: 404 QYIADGAAVAFEAAGRADDVRHFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVV 460 >gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides sp. 2_1_7] gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B] gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides sp. 3_1_19] Length = 427 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 139/399 (34%), Gaps = 33/399 (8%) Query: 27 ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ +++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++VDN K L A I+ +TGT+GK++ + + Sbjct: 68 --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + T + + + AS G + +D + Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+GR H++ + + K L++ + + I ++ Y + + K G Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G +V + +GK + G + + N L A + Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 I + + + R +F T+ I Y +S+++ L N T+ Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTD-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419 ++ G + + ++ + D + ++ Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379 >gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae 70585] Length = 457 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLTPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + +I L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] Length = 492 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 84/451 (18%), Positives = 157/451 (34%), Gaps = 42/451 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS DSR ++ G +FVA+ G DGH ++ ++A + + Sbjct: 36 TGVSIDSRTLRPGDLFVALKGPNFDGHDYVGD------ALAHGAAAALVSRLPGNVPPEA 89 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+T L ++AVTG+ GK+ ++ G + G Sbjct: 90 PVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTGTKEALKLCLDARGPTFATQGSL 149 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + A G R ++ T Sbjct: 150 NNHWGV----------PLSLARFPADAHYGVFELGMNHAGEIG-PLSR--MVQPDVAIIT 196 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H+++ + + +AK +FE + P + + + +++ V R+ S Sbjct: 197 TVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAARTQGLTRIWSF 256 Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G Q G HL + VT S+ G+ + LPG V N+L A D Sbjct: 257 GTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLLAVSAAEGDV 316 Query: 330 ALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-----RTITSGR 383 A L ++ + GR ++G +D ++ ++ + + GR Sbjct: 317 AAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLGKADPGAGGR 376 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I V G + + +A AD+ N + + + + G Sbjct: 377 RIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKF-----LFDRLPAALRGR 431 Query: 440 IEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468 + + A + A+ DV++V KG Sbjct: 432 HTEDSAALAPLVADAV---RAGDVVMV--KG 457 >gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 453 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 81/473 (17%), Positives = 169/473 (35%), Gaps = 49/473 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF-- 59 K+ ++ +LIN ++ ++ ++ ++++ + +K D + Sbjct: 5 KITEIAKVVGGKLINCNKDIILKSVSTRVFG-------VKPEYLYIYLTYSKSD---YNP 54 Query: 60 ---IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 + QAI GA AI+V I P ++V+NT L K Sbjct: 55 NPDVEQAIKNGAAAIMV---------PCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIP 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AVTGTSGK+S + + + + + +TT Sbjct: 106 VIAVTGTSGKTSTKDLIALVLSERFNTHKTLSNVND----LIGVPMTTLQINDTH----- 156 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ + + S+G + +D ++ G T++G HI +++ A Sbjct: 157 ----QISVIEIGLRSYGHIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKA-KMEVAT 211 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 K II DD + ++ + L+ + ++ + + + + Sbjct: 212 YFDKNDILIINGDDPLLSTIKEKPYKIIRISLNGKGEYNAKDVRDLGEKGVEFKCD--YK 269 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G++ F +PG VYNA+ A + I+ V + K R V + Sbjct: 270 GEEHLFKLKVPGIHNVYNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNAK 329 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA 413 I Y +S++ + +++ + I V G G+ + +G+ + DI Sbjct: 330 IILDCYTSELDSMKAGINVLKSFGGNKKIAVLGSMYGCGNLTEEIHREIGRYVIGKCDIL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + N R + E + + G + EA ++ K DV+++ G Sbjct: 390 VTVGGNARYINEE--AKDKLEG----KHCETKEEACSYLKNIIQKDDVILING 436 >gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides helcogenes P 36-108] Length = 432 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 136/374 (36%), Gaps = 22/374 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ F +A+ QG+ +V A NT Sbjct: 16 VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAG------NTHY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN + L A+ + I+ +TGT+GK++ + + + + G + Sbjct: 70 ILVDNCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + + + + AS G + ++ + G TN+ Sbjct: 130 H----------IGVPLTLL---RLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L++ L + I D + + + A Sbjct: 177 GKAHLEGFGSFDGVIKTKGELYDYLRRRGDSTIFIDHD--NPYLKEIAWGLNMIPYGTED 234 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + EG+ + L GE+ N L A + G++ A + Sbjct: 235 ELYVNGRITGNSPYLTFKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGVEPAKI 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + L + R + T I Y S+ + N R + + +++ G Sbjct: 295 DKALAEYVPQNNRSQLKKTA-DNILIVDAYNANPTSMMAAISNFRNMQAENKMLILGDMR 353 Query: 393 DRDQGKRPIMGKIA 406 + + KI Sbjct: 354 ELGKDSAEEHQKIV 367 >gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 194 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 14/154 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+ E+ + QW + ++ V+ DSR+++AG +FV + G + DGH Sbjct: 1 MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ +A GA+A + + D P LVVD+ + L K ++ Sbjct: 54 YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 AVTG++GK++ V I + Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFNN 142 >gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jonquetella anthropi E3_33 E1] Length = 468 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 84/471 (17%), Positives = 157/471 (33%), Gaps = 41/471 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL+ ++ P+ +R DSR ++ G F A G DGHL+I Sbjct: 13 LKDLLPNGL-DVTGPDRPLPLTFR--------VDSRAVEPGDGFAAFQGESTDGHLYIES 63 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120 A+A+GA ++ + A + + L+ A + P +++ AV Sbjct: 64 ALARGASVVLAERGRVSEKLPAQWPQ-VTFIFGHRSETALAELARAYLVRLPDLKHVAAV 122 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ SF+ +I S + G +T+ + Sbjct: 123 TGSVGKTTTRSFLARIMSASQRTHAASGNYNTLIGCSVAVLSAPFDV------------- 169 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + A+ G + A + T + H++ + Q K +F K Sbjct: 170 QCLVLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQGVLREKAGIFGGGRLK 229 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + A++ AD+ E+ + + G + K + G Sbjct: 230 D--AVLNADNPLLAELASQINTPVTTFGRDGSLSFEDDRLEWD-EGFKVSARLCYSGDRV 286 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G+ +Y A L + +G+ + +PGR E V + I Sbjct: 287 PVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESLPGRGEVVRLQNGAFLIDE 346 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 Y + S+ ++++ + GR + G G +G A + Sbjct: 347 SYNASPKSMTAAIQSLGEVQIRGRKFALLGSMG--------ELGAGASAAHQQVMEVARG 398 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVVAGKG 468 + ++ G E +R A+ L DVL+V KG Sbjct: 399 QGFDWWGAYGSDWQSGAKATDNLLTDWEEVRRAVAGLNLRSGDVLLV--KG 447 >gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 476 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 149/457 (32%), Gaps = 45/457 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 VS D+R ++AG +FVA+ + DGH F+ QA+ +GA A +VS + ++ P Sbjct: 25 GVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEKGAAAALVSR------VPENVPADAP 77 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +LVV + + L + I+AVTG+ GK+S ++ + + Sbjct: 78 LLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTKEMLRTVIGGQRRVHAAEASYN 137 Query: 152 TISSFAQDNRLTTPSPIYLAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P+ LA+ + G+ H A L + + I Sbjct: 138 NHWGV----------PLTLARMPRDTEVGIIEIGMNHPGEIAPLARLARPHVAMITT--- 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +G H++ K +F L+P I D + Sbjct: 185 ----VGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAEATGAHIL 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L KV I + F G NAL + A+G+ Sbjct: 241 TFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVVRALGL 300 Query: 328 DSALVLEHLEKLHV-----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 D AL L + + R + + +D A +N + M + Sbjct: 301 DRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEVIAAAR 360 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI------RAEIIHG 435 V R M ++ +LA A + D P + + + + + Sbjct: 361 PKDNVGRHARGRRIAILGEMLELGPDELALHAGL-ADLPATAELDVVHCVGKRMRALYEA 419 Query: 436 IPGFIEKGNRIEAIRTAIEMLN---KQDVLVVAG-KG 468 +P + +A A + DV++V G KG Sbjct: 420 LPPGNRGRHTEKASDLAAKAARLVDAGDVVLVKGSKG 456 >gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2052A-d] gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners ATCC 55195] gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 60-B] Length = 455 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441 >gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 2503V10-D] Length = 455 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441 >gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 315 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 18/153 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 1 MTFRELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 52 DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 VTG+SGK++V + I + G G + Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNN 136 >gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974] gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CCRI 1974M2] gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41301] Length = 457 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 77/482 (15%), Positives = 161/482 (33%), Gaps = 57/482 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I +N + ++ +++ ++ + ++ E L D +++ Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILL-- 437 Query: 467 KG 468 KG Sbjct: 438 KG 439 >gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Parabacteroides distasonis ATCC 8503] Length = 427 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 66/399 (16%), Positives = 139/399 (34%), Gaps = 33/399 (8%) Query: 27 ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I+ +++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 8 DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++VDN K L A I+ +TGT+GK++ + + Sbjct: 68 --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + T + + + AS G + +D + Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+GR H++ + + K L++ + + I ++ Y + + K G Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G +V + +GK + G + + N L A + Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRF 281 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 I + + + R +F T+ I Y +S+++ L N T+ Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTD-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419 ++ G + + ++ + D + ++ Sbjct: 341 AIILGDMRELGPTSDELHAEVVAQIKKGQFDKVFLCGEH 379 >gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC7] Length = 494 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 78/434 (17%), Positives = 139/434 (32%), Gaps = 35/434 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 ++ + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + LT + + + + S+ L + Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246 G N+ + + + A + ++ P S Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301 + +S + + T++ Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P GE V NAL AA A+G+ + + L + GR + + G I D Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ K + +I+V +F G D + ++AL D +T Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430 Query: 418 DNPRSEDPEKIRAE 431 N + I + Sbjct: 431 GNHMAHTAAAINEQ 444 >gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] Length = 471 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/475 (17%), Positives = 148/475 (31%), Gaps = 47/475 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + ++ V DSR G +FVA G + DGH F Sbjct: 1 MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 T P +VVD+ + L A + + ++A+TG Sbjct: 60 ----------AVVGAGAVAVLGTRPVGVPAIVVDDVQTALGALARHVVRRLGATLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR + F G + T Sbjct: 110 SAGKTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEE---------------T 154 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238 + +E + G+ R G N+G HI ++ A ++ Sbjct: 155 RFLVLEMGARGIGHIRYLAGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSE 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + AI+ ADD Y + + R G ++ + + Sbjct: 215 AEGGTAILNADDPYVRAMASRTKAKVILFGESGEADVSAENVRLTDTG-QPAFRLHTPSG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357 D L GE V NAL AA + +G+ + + L + R E Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIAVALSEAGSLSRWRMEVTERPDGVTV 333 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL--AD 411 + Y S+ L+ + + GR V G GD + +G++A+ L + Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSK 393 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + V E G + + A+ L DV++V Sbjct: 394 LVAVG----GREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444 >gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Congregibacter litoralis KT71] Length = 458 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 146/390 (37%), Gaps = 29/390 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + ++ ++ DSR + G +FVA+ G + DGH +I A+A GA A +V Sbjct: 17 PYEGAPLAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEHPVDA-- 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P L V + LS ++A+TG+ GK++V + + I ++G Sbjct: 75 -------DVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKTTVKNLCRSIFTQAG 127 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G P+ LA+ V + A+ G H Sbjct: 128 PTVATAGN----------YNNEIGVPLTLARLDDETR---FAIVEMGATRRGDIAHLCAL 174 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + N H++ + + K +F+ L + AI+ D + +R Sbjct: 175 ARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDG-LGAQGTAILNLDQPWVSLWRERIA 233 Query: 262 NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG +S G +G + T+ V G++ FPLPG V NAL AA Sbjct: 234 RAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAA 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L A G+D ++ LE+ GR I Y S+ + + Sbjct: 294 ALATAAGLDLGTIVTGLEQAEAESGRLRAESLGEDKTLIDDSYNANPGSVRAAIDLLAA- 352 Query: 380 TSGRIIVVFGCG---GDRDQGKRPIMGKIA 406 T+G +++ G G+ + MG A Sbjct: 353 TAGNSLLILGEMLELGEESAERHREMGARA 382 >gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa DY-18] Length = 539 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 81/490 (16%), Positives = 148/490 (30%), Gaps = 55/490 (11%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L E +I E+ + ++DSR +Q G +FVA G DGH FIP A Sbjct: 3 KLSAAQIIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMA 62 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119 +GA +V + P + V + + A + ++ Sbjct: 63 FERGATLALVEREVLDEQGMPY-----PSIQVPDVVLAMGDLARYSIEQMRAQGELTVIG 117 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + I G + +G ++ P+ + S Sbjct: 118 ITGSAGKTTTKDLLAAIFAPEGPTVAPVGSYNSE----------VGVPLTVF---RADES 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + A G ++ + G+ +G H K L E + P Sbjct: 165 TRYLVIEMGADHVGNIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQP 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298 S A+ ADD + R+ + + T + + Sbjct: 225 TGSLAL-NADDERVLRMASRSVAPITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEF 283 Query: 299 --------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349 +++ L GE V+N L AA + GI + L K R Sbjct: 284 TLRLPDGSEYEISSQLIGEHHVHNLLAAATIAYNSGISGEKIARALNKAAAASKWRMART 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCG---GDRDQG 397 I Y S+ L+ + + R V G GD Sbjct: 344 DRADGVTVINDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVE 403 Query: 398 KRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI-IHG--IPGFIEKGNRIEAIRTAI 453 + +G++ + + I D + + I + G EA + Sbjct: 404 EHDRIGRLVVRMNISKLIAVGD-----ETKPIYNAAHLEGSWGNEATWVKTPEEAEQILR 458 Query: 454 EMLNKQDVLV 463 + D+++ Sbjct: 459 AEVRPGDIVL 468 >gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 440 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 71/424 (16%), Positives = 147/424 (34%), Gaps = 50/424 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + Q + +N++ DSR I+ G IF+ + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA L+VD+ A K ++ Sbjct: 54 FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVI 102 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L P + Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNN-EIGLPYTILHMPDDTEKLVLEMGMD 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G E + L L G H+++ +++ + Sbjct: 162 HPGDIDFLSELAKPELAVITLIG------------EAHLEHMGSRENI--------AKGK 201 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + A + ++ +++ G G+ + + K+ +K+++T Sbjct: 202 MGITAGLHGELIAPADPIINAFIPDNQKIIRFGLPGEDLFITKLV--EHKEKLTFETNFL 259 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+PG++ NA++AA + + G+ A + + L+++ + R E+ + + Sbjct: 260 DESITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLL 319 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411 Y ++ +IL+ + I +GR I V + + +I + D Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKEILKSIDFNKID 379 Query: 412 IAIV 415 + Sbjct: 380 KVYL 383 >gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus peroris ATCC 700780] Length = 455 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 78/485 (16%), Positives = 152/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + +N+ DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVARVVGAKNDVTVFLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAALTLSEKEVASH----------PYILVDDVLTAFQALAAYYLQKTGVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTNYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +E L L + + AK +L Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 E ++ D+ + V G+ L+ + K +T Sbjct: 209 MPEGGLLLAPSDSIVDSYL-------PTKQQVVRFGQGAELEVTDLVERKDSLTFKTNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVPEEQIHQAFQNLELTRNRTEWKKATNGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ + V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAI-RTAIEMLNKQDVLV 463 I ED ++ P ++ EA+ + E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTADEDQFEAMTKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners AB-1] gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 09V1-c] gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 01V1-a] gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners SPIN 1401G] Length = 455 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L I + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441 >gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] Length = 178 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 QW + + + DSR I G +FV + G DGH FI A+A G +A Sbjct: 36 QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANGCQAAFWGQDL----- 89 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+L V + + A+ K N++AVTG++GK++ + + + Sbjct: 90 -VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFV 148 Query: 143 SSFQIGPTSTI 153 + G + Sbjct: 149 TYKTQGNYNNQ 159 >gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA17545] Length = 457 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 160/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G L P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN-YNNEIGLPYTVLHMPEGTEKLVLEMGQD 162 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H+ E L + + + L+ + +D + + + + Sbjct: 163 HLGDIHLLSE-----LARPKTAIVTLVGEAHLAFFKDRSEIAKGK-------------MQ 204 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A A + +++ +V+ G + L + K +T V Sbjct: 205 IADGMASGSLLLAPAAPIVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] Length = 478 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 113/315 (35%), Gaps = 21/315 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R + G +FVA+ + DGH F+ A+ +GA A +V + N Sbjct: 24 DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALV------THVPEGVAENA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V++ + L + + ++AVTG+ GK+S + I G + + Sbjct: 77 PLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + +H + L + + Sbjct: 137 NNHWGV----------PLTLARMPADTEYAVIEIGM----NHPGEISPLAQMAKPDVAMV 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 A + + L A+I AD ++ +M +A + R + Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRRLREVEF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G G L V + V +G F PG NAL A A+G D A Sbjct: 243 GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADLA 302 Query: 331 LVLEHLEKLHVVPGR 345 L L + GR Sbjct: 303 LAAASLGRWTPYKGR 317 >gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis ES14902] Length = 452 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + ++ P+ L + + + G Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDN 397 >gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 470 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR------RPEGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L+VD+ + L + ++AVTG+ GK+S + ++ G + Sbjct: 73 SEDAPLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132 Query: 147 IGPTSTIS 154 + + Sbjct: 133 VASYNNHW 140 >gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 79/476 (16%), Positives = 144/476 (30%), Gaps = 43/476 (9%) Query: 5 DLIYKDFPELINQLS----IFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLF 59 D+I E+ + + + ++ V +DSR I G IFVA G + DGHLF Sbjct: 15 DMIALTLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLF 74 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---- 115 P A+ GA ++V L P ++V + L A + + Sbjct: 75 APWAVEAGAALLLVERELDLP---------VPQVLVPDVVDALGRLAHEVVARVRALGEL 125 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++AVTG++GK++ + + I + G + + + T Sbjct: 126 RMVAVTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVT----------- 174 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S + AS G + RL + Sbjct: 175 --RSTRFLVAEMGASGLG-EITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMV 231 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + L E A++ ADD + + + + A T+ + Sbjct: 232 KDLLPEDTAVLNADDPRVASMSDKTQAPVLWFGRDARAA--VRATDIVASAAGTTFTLHL 289 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +AA + + R+ G Sbjct: 290 PDGSTRPVSFRVLGEHHVTNALAAAAGAWALGVDGDAIVSALQTVQRAERWRMEVLGGNG 349 Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409 + D Y + +S+ L+ + I R + V G G+ + + +G +A+ L Sbjct: 350 VTVINDAYNASPDSMAAALRTLAQIRGPEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRL 409 Query: 410 AD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +V R E I G I + EA +L D+++V Sbjct: 410 NIGQLVVVGRPARRLHLEAIGQGSWDG--ESIFAEDAAEAREILDGILRDGDLVLV 463 >gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] Length = 478 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 82/447 (18%), Positives = 149/447 (33%), Gaps = 29/447 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR + G +FVA G K DG+ +I A+ GA + S + R + + Sbjct: 29 VEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDATL 88 Query: 93 LVV--DNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L D+ +FL A + ++AVTG+ GK++ ++ G Sbjct: 89 LRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDMLRAGIATQRRVHATAGN 148 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + L + G + Sbjct: 149 HNNLIGLPMTILSAPKDAEVL-------------VCECGMNHKGEILRLTRCCRPTIAVI 195 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP----AIIYADDAYSKEVMKRAHNAGC 265 TN+G HI +++ AK + E + + D S K A G Sbjct: 196 TNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFARPKGI 255 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLC 322 V+ VG I + + + T + +D F +PG V +AL+A Sbjct: 256 DVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMALEAI 315 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITS 381 +G+D + L+ + + R + I Y + +S+ L + R T Sbjct: 316 TLLGLDRDMALDAIATMPPTRMRLSVLHAVCGARIIDDSYNASPSSMAAALDVLSRMPTR 375 Query: 382 GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR I + G G+ Q ++ + G +A D+ + + E E + Sbjct: 376 GRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDAAREMAEA-AKTMGLSED 434 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + + ++ +L D ++V Sbjct: 435 AIELVESVEDVMKIIPPILKDTDTVLV 461 >gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 461 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 88/474 (18%), Positives = 159/474 (33%), Gaps = 41/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M DL + E++ ++ P + +RK+N + DSR G +F I G + D H F Sbjct: 1 MLKLDLTIGEMLEILETEAVGVPARTLKRKVN-LCMDSRESAKGVVFWPIKGARFDAHQF 59 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + Q GA VV+ +F V++T K L A +A Sbjct: 60 VSQMEKDGALMSVVNQTAIDPNFKMYAP-------VEDTTKALLKLAKGYQRLFKLKKVA 112 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG++GK++ + + + G + P+ L + Sbjct: 113 ITGSNGKTTTKEMTKAVLSMKYNTHATKGNFNNH----------IGVPMTLFQLKHS--- 159 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + S + + TN+G H++ FN L Sbjct: 160 HEAAVVEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLGDLDGVFNE-KINITAGLK 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + I+ ADD +V + V G + K + + + Sbjct: 219 ENGTLIVNADDERLCKVKA------TKHYKVVTFGVRRGVVKPEKLKWTENLCADFYVGR 272 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ +PG+ +Y+AL A + A+ I + + L R E N Sbjct: 273 THFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAGFTSTSMRMEIKNANGFKVISD 332 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415 Y +S +M L+ + + G+ I V G G +G + ++ ++ Sbjct: 333 C-YNANPSSTKMALQTLGNMRVEGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLL 391 Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 +D +K G+ E I E++ + D+L+V KG Sbjct: 392 AV----GKDAKKYVEGAKSRGMKNVQYFETVPEVISMLGEVVAEGDILLV--KG 439 >gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 454 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 67/404 (16%), Positives = 135/404 (33%), Gaps = 40/404 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +N++ DSR+I G +F+ + G + DGH FI A GA A A Sbjct: 12 SDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVATFSERAI----- 65 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 S P ++V+N A K +++AVTG++GK+S ++ + ++ Sbjct: 66 -----SGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYK 120 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G P + + L R+ Sbjct: 121 TYKTQGN----------YNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQL-LSRIA-- 167 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + T +G H+ Y +++ A+ ++ + +I D + + Sbjct: 168 RPHIAVLTLIGEAHLAYFGSREKI--AEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQM 225 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G L K +T PL G++ NA++AA + Sbjct: 226 VI-------RFGDHQELVVEDIKERKDSLTFKTNVLPRPVTIPLTGKYNATNAMIAAYVG 278 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 + + ++E LE + + R E++ + + Y ++ +IL+ I Sbjct: 279 RLLAVPDEDIIEALEAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPAN 338 Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDN 419 +G+ I V + + ++ D + D+ Sbjct: 339 LNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDD 382 >gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] Length = 474 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 118/389 (30%), Gaps = 26/389 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ ++ L+ +Q + I VS+D+R + G +FVA+ G + DGH + A Sbjct: 1 MMRASLQQVATWLNQLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARL 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A +VS + P + V++T L G+ ++A+TG++G Sbjct: 61 AGAAAAIVSH--------LNPDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++V + IC ++G + +G + I L+ + + + + Sbjct: 113 KTTVKQLLASICAQAGPTLATLGNLNNDIGVPLTLLSLSDIDQFAVIEMGANHLGEIARL 172 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++ GL Sbjct: 173 TALARPDVGL-----------ITMAGTAHVGEFGSVDAIVQGKGELFVGLVPEAQAVINL 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 Y D + + + + + + Sbjct: 222 DSYGADRWWAMGSAQRNGFTLNNDPRARWTGEYNATTERLTIFENGQLL-----IESQPL 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG N L A + G ++L L GR V + + I Y Sbjct: 277 PLPGAHNATNLLAAVAVARTAGFSKEIILAGLNSFTPPAGRMSLVACSEQLTVINDTYNA 336 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD 393 S+ L + G + V G G+ Sbjct: 337 NPESMCAALDYLVG-RPGLHLAVLGDMGE 364 >gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 456 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 85/472 (18%), Positives = 156/472 (33%), Gaps = 49/472 (10%) Query: 10 DFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D E+ L Q+ + DSR I +G +FV + G + DGH FIP A AQG Sbjct: 4 DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A + + ++VD+ A K ++LAVTG++GK+ Sbjct: 63 AAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKT 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + Q+ S + G L P G H+ Sbjct: 113 TTKDMLAQLLATSYKTYKTQGN-YNNEIGLPYTILHMPENTEKLVLEMGQDHLGDIHLLS 171 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E + L G + + + + + + Sbjct: 172 ELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPAD----------- 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 K + + G + K ++ + P+ Sbjct: 221 ----------KIVNEFLPADCKLVRFGPDSDIFLTRLEERKDSLSFECNFLEQRIDLPVT 270 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G++ NA++AA + G+ A + + +L + R E+ ++ + Y Sbjct: 271 GKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKASNGADILSDVYNANPT 330 Query: 368 SLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++ +IL+ TI + GR + V + + + G + L + IVTD +D Sbjct: 331 AMRLILETFSTIPTNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTDLFLYGQD 389 Query: 425 PEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGKG 468 E + EI G + K + E ++ A+ L D +++ KG Sbjct: 390 MEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILL--KG 439 >gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter sp. SXCC-1] Length = 463 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 147/474 (31%), Gaps = 40/474 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L L + + VS D+R + G IF+A+ G +GH + Sbjct: 1 MTL--LWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHV 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA +V ++ IL VD+T + A + +LAV Sbjct: 59 ARALEAGAACVVAHEDCG---------TDPRILRVDDTLAAMQAMARYARARFGGRMLAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+SV + G + + + P+ LA+ + + Sbjct: 110 TGSVGKTSVKDMLHAALAACGPTHCAVASYNNHWGV----------PLTLARLPAGAAYC 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 A ++ T + H+ + +A K + L Sbjct: 160 VCEIGMNHAGEIA---PLAAMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRG 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I + A + +G I V A ++ + G Sbjct: 217 GIGIIPDGVSGQAFFERNAAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVG 276 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PG NA++A G A G D A + L GR + Sbjct: 277 EAHVSAPGRHMAANAMLALGAACAAGADMARAVAGLATFRPGAGRGAMTKVMQDKVALLD 336 Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + Y + S++ L + + GR + V G G + + ADI Sbjct: 337 ESYNASPASVQAALDLLGLVAPGRRVAVLGDMLELGAFAGHEHVSLLPAVRANADIVFCC 396 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468 N ++ + + + G + A +R A+ D ++V KG Sbjct: 397 GPNMKT-----LFDTLPPSLRGAWTPDSGQLAPLVRAAL---RAGDTVMV--KG 440 >gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 440 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 148/429 (34%), Gaps = 60/429 (13%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + Q + +N++ DSR I+ G IF+ + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA L+VD+ A K ++ Sbjct: 54 FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVI 102 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L P + Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNN-EIGLPYTILHMPDDTEKLVLEMGMD 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G E + L L G H+++ +++ + Sbjct: 162 HPGDIDFLSELAKPELAVITLIG------------EAHLEHMGSRENI--------AKGK 201 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + + A + ++ +++ G G+ + + K+ +K+++T Sbjct: 202 MGITAGLHGELIAPADPIINAFIPDNQKIIRFGLPGEDLFITKLV--EHKEKLTFETNFL 259 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+PG++ NA++AA + + G+ A + + L+++ + R E+ + + Sbjct: 260 DESITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLL 319 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD---------RDQGKRPIMGKIA 406 Y ++ +IL+ + I +GR I V + +D K KI Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKDILKSIDFNKI- 378 Query: 407 LDLADIAIV 415 D + Sbjct: 379 ----DKVYL 383 >gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners UPII 143-D] Length = 455 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L + + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441 >gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 3_1_12] gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 432 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 72/391 (18%), Positives = 142/391 (36%), Gaps = 24/391 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS + + + V++DSR+ G +F+A+ G +G+ F QA+ G VV A Sbjct: 2 KLSALYQIFLDCAV--VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + N I++VDN + L A+ + ++ +TGT+GK++ + + Sbjct: 60 EYAPE------DNKHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 ++ + G + P+ L + + + + + A+ G + Sbjct: 114 LAKAHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HDLAVIEMGANHPGEIK 160 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + G TN+G+ H++ + + K L++ L K+ + D Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKDDSTVFIHHDNVYLMD 220 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + R N + + + +G L GE+ NAL Sbjct: 221 IARGLNLIPYGSENSLYVNGHVTGN--SPYLTFEWKAGKDGNLHQVQTQLIGEYNFPNAL 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G++S+ + E L R + T I Y S+ L+N Sbjct: 279 AAVTIGRFFGVESSKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 R +T R +++ G + KI Sbjct: 338 RNMTVERKMLILGDMRELGAESAAEHHKIVE 368 >gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] Length = 471 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 147/470 (31%), Gaps = 37/470 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + ++ V DSR + G +FVA G + DGH F Sbjct: 1 MIALSLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ P +VV + + L A + K ++A+TG Sbjct: 60 ----------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S V Q+ +R + F G + T +L Sbjct: 110 SAGKTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240 + + A G ++ G N+G HI ++ A ++ + Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEE 216 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AI+ ADD + + R G + + + Sbjct: 217 GGAAILNADDPLVRAMASRTKARVILFGESGEADVRAENVTLTDAG-QPAFRLHTPSGAS 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359 D L GE V NAL AA + +G+ + + L + R E + Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSVSEIATALSEAGSLSRWRMEVTERPDGVTVVN 335 Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414 Y S+ L+ + + GR V G GD + +G++A+ L + Sbjct: 336 DAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLV 395 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 S E G + AI L DV++V Sbjct: 396 AVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAIDLLRSQLRPGDVVLV 444 >gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 2062A-h1] Length = 455 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L I + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFAINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441 >gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136] Length = 821 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 84/503 (16%), Positives = 173/503 (34%), Gaps = 63/503 (12%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65 E+ + + + + I+ + +DSR + +F A+ + DGH +IP+ A Sbjct: 2 SNSIEEITSVIGAERIGKHQATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYA 61 Query: 66 QGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +G +V L + ++ L V NT K L A++ + ++ +TG++ Sbjct: 62 RGVRNFVVTDVPEQLSHY-----ADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSN 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+ V ++ Q+ + + S + ++++ P + + Sbjct: 117 GKTVVKEWIYQLLSPEKVIT--------RSPRSYNSQIGVPLSV-----WMMNEHTELGI 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 S G + I+ G TN+G H + + Q K++LF+ + Sbjct: 164 FEAGISEMGEMEALQPIIQPTIGVLTNIGWAHQENFSSLQGKCMEKLQLFK---DCDVII 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ S V K + S+ + + ++K+ V G ++ Sbjct: 221 YNGDNELISSCVSKSLFTSREIAWSMKDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRI 280 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P + + N+L A + + + + + E + L V R E + I Y Sbjct: 281 PFIDDASIENSLNALAVALYLMVSPEDIAERMAHLEPVAMRLEVKEGKNGCVLINDSYNS 340 Query: 365 TSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTD 417 SL++ L + R ++ + Q + + ++A D I Sbjct: 341 DFASLDIALDFMARRTEDKGRRRTLILSDILESGQPSKLLYRQVADLVHSRKVDRII--- 397 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKGHETV 472 + EI F E R E I + I + +V+++ KG Sbjct: 398 ---------GVGEEISAAASRF-EIDKRFFRTTAELIESGILSSLRNEVVLI--KGA--- 442 Query: 473 HIVTNGEKKMSVDCDIIREILGL 495 D I ++L L Sbjct: 443 ------RVFHFDD---ITDLLEL 456 >gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio harveyi ATCC BAA-1116] gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116] Length = 454 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 73/442 (16%), Positives = 156/442 (35%), Gaps = 39/442 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V Sbjct: 9 IADITGGERVGNDLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ + +++ L A+ ++ +A+TG+ GK++V V Sbjct: 69 KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q G F G + P+ L + + A+ G Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++ +K N+ H++ + A + L AI+ D Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGGA 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + S + + + I+ ++ + + G+ Sbjct: 226 KWDEVLADKNVITFSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA+ A+ + + +G + L+ L+ V GR E + + I Y + +++ Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD---------LADIAIVTD--D 418 + + R +++ G+ +G+ A AD ++++ D Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISELCD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFI 440 E +++ I + + Sbjct: 406 GIHFETHQEMIDYIKQHLDQAV 427 >gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acidiphilium cryptum JF-5] gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium cryptum JF-5] Length = 451 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 93/447 (20%), Positives = 166/447 (37%), Gaps = 47/447 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS DSR I G +FVA+ + DGH F+P A A+GA ++V+ Sbjct: 26 TGVSIDSRTIAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGAG---------- 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L+V++ + L+ + ++AVTG+ GKS+ +++I G + Sbjct: 75 PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHAAEASF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + V + + G + G T Sbjct: 135 NNH----------IGVPLTLARLPAE---ADFAVVEIGMNHPGEIAPLSAITRPHVGVIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G H+ + +A + K L ++P + + + + +RA + V Sbjct: 182 AIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG--PFLSRLARRARDGVRVVSFG 239 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 L + + + VT ++ PG NA+ A A+G+D A Sbjct: 240 AQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLDPA 299 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387 L+ + GR N G I + Y + NS+ L+ + ++ GR I V Sbjct: 300 QAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL-SLLPGRRIAV 358 Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIE 441 G GD + + +AD+ + R E PE+ R ++ Sbjct: 359 LGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRGA------WAVD 412 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A+R A+ + DV++V KG Sbjct: 413 AASLAPAVRAALAV---GDVVLV--KG 434 >gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M04-240196] Length = 452 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha153] Length = 452 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR IQ G +F A+ G + D H F+ + Sbjct: 15 LPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKTTVKEMLASV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAVALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LEAF 3008A-a] Length = 455 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L I + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441 >gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915] Length = 447 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I E+ + R + D R + G +FVA G DGH F QA Sbjct: 1 MIAMSVGEIAAAVGGLVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 GA A++ S P +VVD+ + L A+ + + ++AVTG Sbjct: 61 QAGAVAVLGSRPTV-----------LPTVVVDDVQAALQALAAHVLARLRAGLTVIAVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + + P +L Sbjct: 110 SQGKTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFL------------ 157 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + L N+G H+ +++A AK L L Sbjct: 158 -VLEMGARHTGDIAMLTNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGEL-VRGLVPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + + + + + T+ Sbjct: 216 TAVLNADDPRVALMRSLSDGPVLTFGYADHADVRVRDLTLDRFG-RPSFTLCTADASVGV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P G Q NA A +A G+ + L + R E S + Y Sbjct: 275 TLPFVGGHQAGNASAATAAALAAGVSLDVAAAVLGTASLSKWRMELRHLTSGVTLLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 + +S L + + R I V G G + + +G+ A AD+ I Sbjct: 335 NASPDSTRAALDALLAVEGARRIAVLGEMRELGQASEAEHRAVGEYAAARADMVIAI--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E + G + + A++ L DV++V A +G Sbjct: 392 --GETVRPLAD--GAG-DRAVVLADNDAAVKWLHGNLAAGDVVLVKASRG 436 >gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus iners LactinV 11V1-d] Length = 455 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+Q E+ N + ++ V DSR A +FV +VG + DGH ++ Sbjct: 1 MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A + ++ + N P+LVVD+T L A K ++ + Sbjct: 54 ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ V + + + I + + + Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V H L I + + + + L + Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + I D+ +++ ++ + + + ++ Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F P+ G+ V NAL A + G+ + + L R ++ + + Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329 Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413 Y + + +L + + GR I V G + + +A L D Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + K E + G + EK + I E + D++++ KG Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441 >gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium urealyticum DSM 7109] Length = 500 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 83/494 (16%), Positives = 145/494 (29%), Gaps = 54/494 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + I + E + V DSR + G IF+A+ G DGH ++ A Sbjct: 4 LSAGEIAAITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVAAAGE 63 Query: 66 QGAEAIVVSSAYSLQDFSATIR------SNTPILVVDN------TRKFLSLFASR----L 109 QGA +V A N+ + D + A L Sbjct: 64 QGAALAIVGRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHNTDVL 123 Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 + ++ VTG++GK+S + + G + G +N + P Sbjct: 124 ADEEGMVVVGVTGSAGKTSTKDLIGALLGDLGETVAPPGS--------FNNEIGLP---- 171 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 AL + A G H G N+G H+ +++A A Sbjct: 172 -YTALRASRGTKFLVSEMSARGVGHIAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQA 230 Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKV 282 ++ AI+ ADD + R G + + Sbjct: 231 KGELVEALPAAEDGGIAILNADDDAVIAMRHRTRARVVTFALDERSKTGERADYWASDIR 290 Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLH 340 + + + D + G QV NAL AA + + G+ +++ + Sbjct: 291 LDEVARASFRLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLGNHVA 350 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG---GD 393 R + I Y S+ + + GR V G G+ Sbjct: 351 ASANRMDVRTRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGE 410 Query: 394 RDQGKRPIMGKIAL-DLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 + +GK D A++ T N R I + A+ Sbjct: 411 ESAEEHTELGKFLGTRGIDHAVIVGTGVNQR-----AIADAAREHGVDTRSVEDVDAAVN 465 Query: 451 TAIEMLNKQDVLVV 464 + + +DV++V Sbjct: 466 FVDQHVKPKDVVLV 479 >gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria cinerea ATCC 14685] Length = 452 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 77/428 (17%), Positives = 135/428 (31%), Gaps = 40/428 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK DL I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ Sbjct: 1 MKPLDL------NFICQALNLPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116 + R + L VD+T L A Sbjct: 55 ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TG+ GK++V + I +R + ++ P+ L Sbjct: 103 VFGITGSGGKTTVKEMLAAILRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + G K A N R H+ + Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQ 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L + A+I +DA + + G +H + + + + Sbjct: 213 GLCSDGIALIPQEDANMAVF--KMATLNLNTRTFGIDSGDVHAENIMLKPLSCEFDLVCG 270 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + P+PG V+NA AA L +A G+ V E L+ + GR Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGAT 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411 I Y +S++ + + + + R I V G G+ + + M A + Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389 Query: 412 IAIVTDDN 419 A DN Sbjct: 390 AAYFVGDN 397 >gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Herpetosiphon aurantiacus ATCC 23779] Length = 489 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 147/471 (31%), Gaps = 46/471 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI---------PQAIAQGAEA- 70 P I DSR +FVA+ G + DGH FI + +G A Sbjct: 21 LPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRGRLAD 80 Query: 71 ----------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +++ A + ++ VD T + A+R + ++ + Sbjct: 81 PSQLGLDRPFVLLDPDQGQIANEAPANA-FFLISVDQTLTAMHRLATRYRQQQDLVVVGI 139 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+S + + + + ++ ++ P Sbjct: 140 TGSVGKTSTKEVLAAMLAPTMRTHKSPRSYNSENTLPLVVLGIEPE-------------H 186 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + + + G + G TN+G H++ T + AK L + L Sbjct: 187 QIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSELVQALPAD 246 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D M++ A + + + G+ + Sbjct: 247 GWAIL--NYDDQRVRAMQQVTKAQVFTYGLDPEADLWADNIESRGLDGIGFDAHYRGEQW 304 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G V+ AL AA + I +G+ +++ L R I Sbjct: 305 HIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLR--SSAQLRLLSYPAVGGATLIDD 362 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417 Y + S L + + GR I VFG G D+ ++G A D+ D V Sbjct: 363 TYNASPVSCIAALNLLAEL-QGRRIAVFGDMAELGPHDESGHRLVGVRAADVVDQLYVVG 421 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + R E I E+ ++ I L D ++V KG Sbjct: 422 EKARWIGEEAI--EVGLPAEQVHVLPDKAALIAALQSTLQANDYVLV--KG 468 >gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11A3] Length = 457 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 78/475 (16%), Positives = 155/475 (32%), Gaps = 52/475 (10%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + ++ + R+ +S DSR + +F+AI G DGH F+P + +G Sbjct: 6 SELNNVLGDIKNLSEGKRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 +++V+ + + SN P VV++T + A K I+A+TG+ GK+ Sbjct: 66 VQSVVI-----KKGMQRLLPSNFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + G + T + + Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIE---------------DKALVL 165 Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E GL Q + + TN+G HI +++ A + L E I Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYA-KCEISKYLNPEGVVI 224 Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I A+D + ++ +K + F + +N TI +E F+ Sbjct: 225 IPANDPFLEKTLKEVWKGRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFE 284 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 N L A + +GID A + + + + + + Sbjct: 285 ISLEGF--HNASNFLFAYAVAKELGIDFASFNKFDFAILGGRNK---ILKSVKTTIYDES 339 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y + S++ +KN+ + +FG +G+ + +N Sbjct: 340 YNASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGEQSEKYHKEIFNLINNSD 390 Query: 422 SEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E I + + F+ N + + + K D +++ KG Sbjct: 391 IEKCVFICDKKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSVLI--KG 443 >gi|309801877|ref|ZP_07695993.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] gi|308221492|gb|EFO77788.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] Length = 288 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 10/178 (5%) Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--- 384 H + VPGR E VDYAH S+ ++ + R Sbjct: 110 PFDSAAMHAMESVHVPGRMELFTGTDGDTVAIVDYAHNYTSVRALIDFVEQRYCERKPRI 169 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FI 440 +V G G++ +R + + A D + T ++ +E I E++ + Sbjct: 170 TLVAGSAGNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDAT 229 Query: 441 EKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R++AI +A+E + D V+++ GKGHE N D ++ +L + Sbjct: 230 VIVDRVKAIESAVEQAHSHDGLDVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 287 >gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] Length = 461 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 17/247 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + L + ++I +V DSR G +F A+ G K DG ++ +GA A+VV Sbjct: 17 IAPLLKADCLNPNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVV 76 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132 + + + A R P+L ++ L A + P + +TG+ GKS+ Sbjct: 77 PKSRAAE---ALARVRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTTKEA 133 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + +I G ++ G ++ P I + + Sbjct: 134 LARITAVLGSTAKTPGNLNS--------EYGLPLSI-----FGLDETSRYGVFEMGIDHV 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + +K TN+G H++ +Q+ K R+F L + Sbjct: 181 GEMDRMVGMLKPSIALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAGFVSSSCKHLDL 240 Query: 253 SKEVMKR 259 + + R Sbjct: 241 IQTIAAR 247 >gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 300 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 18/153 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 1 MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 52 DQVAAKGAVGALVEHEVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 VTG+SGK++V + I + G G + Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNN 136 >gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus 5a2] Length = 433 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 66/387 (17%), Positives = 133/387 (34%), Gaps = 33/387 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR A IF A+ G DG++F QA+A+GA V+ + + + Sbjct: 21 VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDN-------PRYYQEDERY 73 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V++T + L A + I+A+TG++GK++ + + + G Sbjct: 74 LLVNDTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGN--- 130 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +N + P + LS S + + + A+ G + ++ G TN+ Sbjct: 131 -----FNNHIGVPISL-----LSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNI 180 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ K L+ L I + D+ V N Y Sbjct: 181 SHAHLEGFGGINGVIKGKSELYTYLKQHGGVPFINSADSVLLNVANGFVNPIYYPQKGDY 240 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + L G+ +N A + GI+ +V Sbjct: 241 YYCELKEAN--------PYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMV 292 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 ++ + R + + + Y S++ L++ + S +++ Sbjct: 293 NTAIQAYNPSNNRTQLIKKG-TNSILLDAYNANPASVQAALESFSFLKSMYKVLILADMN 351 Query: 393 DRDQG----KRPIMGKIALDLADIAIV 415 + + + I+ K A D ++ Sbjct: 352 ELGEESLAFHQAIIEKTAQQDYDAILL 378 >gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136] Length = 466 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 138/388 (35%), Gaps = 33/388 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G +G+ F QA+ QG V+ + + + Sbjct: 55 VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT--------- 105 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN + L A+ + ++ +TGT+GK++ + + R + + G + Sbjct: 106 ILVDNCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNN 165 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + A+ G + + + G TN+ Sbjct: 166 H----------IGVPLTLL---RLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNV 212 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G+ H+ + + K L++ + I ++ Y + + G + G Sbjct: 213 GKAHLQGFGSFEGVIRTKGELYDFLRAKGGATIFIQNENPYLNGIAE-----GLTCVRYG 267 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++ + + EG + L G + + N L AA + G+ Sbjct: 268 QTAGLYVSGELISCSPFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDD 327 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L R + + I Y S+ LKN R I + +V+ G Sbjct: 328 ISSALASYLPHNNRSQL-KETADNKLIVDAYNANPTSMMAALKNFRQIEAPHKMVILGDM 386 Query: 392 GDRDQGKRPIMGKIALDL----ADIAIV 415 + + R K+ L D ++ Sbjct: 387 KELGEASREEHQKVVDYLKECGFDRVVL 414 >gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] Length = 432 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 167/453 (36%), Gaps = 36/453 (7%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS + + + V++DSR+ AG +F+A+ G +G+ F QA+ G +V A Sbjct: 2 KLSALYKIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +N I++VDN + L A+ + ++ +TGT+GK++ + + Sbjct: 60 EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +S + G + P+ L + + + + + A+ G + Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + G TN+G+ H++ + + K L++ L KE + D + + Sbjct: 161 FLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M AH + + + +G L GE+ NAL Sbjct: 219 MDIAHGLNLIPYGSEDALYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G+++ + E L R + T I Y S+ L+N Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T + +++ G R + + A + I + E + + Sbjct: 338 RNMTVKKKMLILG-------DMRELGAESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 P + N E I+ ++ +D +++ KG Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419 >gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 484 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 153/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + + DSR I G +FV + G + DGH Sbjct: 28 MKL------TIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 80 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 81 FIETAFENGATVTLSEKEVA----------NHPYILVDDVLSAFQALAAYYLEKTAVDVF 130 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 131 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 176 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 235 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + + K +T Sbjct: 236 MAPVSLLLAPADP----IIEDYLPTDKKVVRFGSGAELEVTDLIE---RKDSLTFKANFL 288 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P+ G++ NA++AA + + G+ + + + L + R E+ + + Sbjct: 289 GQALDLPVTGKYNATNAMIAAYVGLQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 348 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 349 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLD 408 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 409 TIIF-----YGEDIAELAQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 463 Query: 464 VAGKG 468 + KG Sbjct: 464 L--KG 466 >gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 77/478 (16%), Positives = 155/478 (32%), Gaps = 48/478 (10%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + +++ + + +S DSR +F+AI G DGH FIP+ + +G Sbjct: 6 SELNDVLGNIRNLRESKSDFLSFKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 +++V+ + + SN P V++T + A K I+A+TG+ GK+ Sbjct: 66 VKSVVI-----KKGMQRLLPSNFPYWAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + G + T + + Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIE---------------DKVLVL 165 Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E GL Q + + TN+G HI +++ +A + L E I Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITHA-KCEISKFLNPEGVVI 224 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFL 303 I A+D + ++ +K + + + + ++ ++ F Sbjct: 225 IPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE 284 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G N L A + +GID A + GR + + + Y Sbjct: 285 ISLEGFHNASNFLFAYAVSKELGIDFASF--NKFDFVSFGGRNKILKSLKTTIYDE-SYN 341 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + S++ +KN+ + +FG +GK + +N E Sbjct: 342 ASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGKESEKYHKEIFNLINNSDIE 392 Query: 424 DPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 I + + F+ N + + + K D +++ KG Sbjct: 393 KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKGDSILI--KGSRCWQ 448 >gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] Length = 508 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 78/494 (15%), Positives = 146/494 (29%), Gaps = 52/494 (10%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +I E+ + + + + + DSR I+ G +F+A+ G + DGH FI QA Sbjct: 1 MIALTAAEIAHIVGGELVHVDDDATVTQPAEFDSRKIREGSLFLALPGARVDGHDFIDQA 60 Query: 64 IAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 +A G A+VV QD +A ++ P + L A + + Sbjct: 61 VAAGATMALAARDVGQPAVVV-KPLGKQDSNADAFAHDPDGSGAAVLEALGKLARYVVDE 119 Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 + +++ VTG++GK+S + + + G + G + TP Sbjct: 120 LKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGPTVAPKGSFNNEIGHPYTVLQCTPE--- 176 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + A G H G+ N+G H+ +++ A Sbjct: 177 ----------TKYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTAHLGEFGSREVIAQA 226 Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 ++ + A++ ADD Y + R + + Sbjct: 227 KGELVEALPAAEQGGVAVLNADDDYVTGMAPRTQAKVVFFSADESSERHATADYRATNVQ 286 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-------LVLEHLEKLH 340 + P + QVY A A AI + + + Sbjct: 287 LDDFARASFDLHVPDGRTFPIQLQVYGAHQVANALAAIAVAVESGIDAEQVAKAMAAHVA 346 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLE------MILKNIRTITSGRIIVVFGCG--- 391 R + I Y +S+ T V G Sbjct: 347 ASERRMDVQQLTGNIVVINDSYNANPDSMRAGIDALARTAAGPTHQDASSWAVLGQMGEL 406 Query: 392 GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GD + + +G+ + D I ++ E+ G+ + A Sbjct: 407 GDSAEDEHSSLGEYLVGRGIDRLIAVGESSNVHALADKAEEL--GL-NTSRVPDTSTAAD 463 Query: 451 TAIEMLNKQDVLVV 464 + DV++V Sbjct: 464 LVAAEVRPDDVVLV 477 >gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrobacter aurescens TC1] Length = 496 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 72/479 (15%), Positives = 145/479 (30%), Gaps = 45/479 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I E+ + + V +DSR G ++VA G DGH F+ A Sbjct: 1 MIALTAAEIADITHGRLTGDPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAAFE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116 +GA ++ + D P +VV++ + A+ + Sbjct: 61 RGAVLVLGEREVTDADGRPF-----PAVVVEDAVLAMGALAAESVRRIRAERASRGEDFT 115 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ + + +G + G + P+ + + Sbjct: 116 VIGITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGE----------VGVPLTVF---AA 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ + + A+ G ++ + +K G +G H + K L E Sbjct: 163 DATTRFLVIEMGATGLGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEA 222 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTIS 294 L + A+I DD + R S + + + V + Sbjct: 223 -LSEHGTAVINLDDGRVAAMRARTKAKVLGFTSSPATTEEVEARNVVVNGQGFPDFDLVL 281 Query: 295 VEGKDFDFLFPLPGEFQVYNALV--AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +G + L+ AA A + + + R E Sbjct: 282 PDGGPAVEVRSRLIGGHHVTNLLAAAAAAFAAGIPAADIATSLSSQSAASRWRMERTERA 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408 I Y S+ L+++ + GR V G G+ + +G + Sbjct: 342 DGVTIINDAYNANPESMRAALRSLADLGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVR 401 Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 L + + +V E + I G EA L D+++ Sbjct: 402 LNISRLVVV-----GREARALYISAIQEGSWGDECSFTETVEEAYELLQRELEPGDLVL 455 >gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 85/477 (17%), Positives = 149/477 (31%), Gaps = 46/477 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + +I V DSR ++AG +F A G DGH + Sbjct: 1 MIALSLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A A P LVVD+ + L A + + +++A+TG Sbjct: 60 ----------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ R + + G +N + P + +S Sbjct: 110 SAGKTSTKDLIAQVLDRHAPTVWTPGSL--------NNEIGLP-------LTALRASDET 154 Query: 183 THVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238 H+ +E + G+ R G N+G HI ++ A ++ Sbjct: 155 RHLVLEMGARGIGHIRYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAA 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A++ ADD + + R ++ + + Sbjct: 215 EDGGVAVLNADDPLVRAMASRTKARVTLFGEADEAAVRAENVRLTENG-QPSFRLHTPTG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357 D L GE V NAL AA + +G+ + L + R E Sbjct: 274 CSDVTLRLYGEHHVSNALAAAAVAHELGMPVEEIATALSEAGTLSRWRMEVTERPDGVTI 333 Query: 358 IYVDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408 + Y S+ L+ R V G GD + +G++A+ Sbjct: 334 VNDAYNANPESMRAALRALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVR 393 Query: 409 L-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 L + D S E G + A+ L DV++V Sbjct: 394 LNVSKLVAVGDREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 449 >gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] Length = 488 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 84/442 (19%), Positives = 151/442 (34%), Gaps = 32/442 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++AG +FV +VG + DGH F+ A GA+A +V +A++ Sbjct: 58 VCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGAQAALV-----AAGSNASLPEGLLH 112 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T AS + ++AVTG++GK++ ++ G + Sbjct: 113 WRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAGKTTTRELIRAALASLGPIQASASNNNN 172 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 TT V + G + + TN+ Sbjct: 173 DIGVPLTLLGTT-------------QHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNI 219 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G HI +++A AK + L I D + + RV VG Sbjct: 220 GTAHIGRLGSREAIAAAKCEITAALKLDGVVVIPAGDPLLETALARVWQGRIHRVALVGD 279 Query: 273 QG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G L + + + + + +FD+ PL G N L+A + + +DS Sbjct: 280 PGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNARNWLLARAVASGLNVDSDS 339 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 ++ + R +G + Y + ++ L + R V+ Sbjct: 340 LVALDVDVPGGRNRRLKLGALTVLDET---YNASPEAVLAALDLLAQQPGRRFAVLGTML 396 Query: 392 GDRDQG---KRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 D+ R ++ + +AL L + +VT AE + F + Sbjct: 397 ELGDESAALHRAVVERAVALKLDGLVVVTSG-----AEATAMAEAGASLERFAVVASPEA 451 Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468 A L+ D L++ A +G Sbjct: 452 AAEPLRGWLSAGDCLLLKASRG 473 >gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Shewanella amazonensis SB2B] gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella amazonensis SB2B] Length = 455 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 166/453 (36%), Gaps = 47/453 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ++ + SDSR + G +FVA+ G + DGH F A A GA A++V L Sbjct: 19 GEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVERELPLA---- 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P LVV +T+K + + + +A+TG++GK+SV V + + Sbjct: 75 -----LPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G + P+ L + A+ G + + Sbjct: 130 FTAGNFN----------NEIGVPLTLL---RLEQGHEYGVFELGANHKG-EIDYTSSLVR 175 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + S N +A L ++ I+ DD Y++ ++ + Sbjct: 176 PSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNKLKGKR 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +G + + + + G PL G+ QV NAL A +CIA Sbjct: 236 VLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIA 295 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG 382 +G+ + L KL V GR G + VD Y NS+ + ++ I++ Sbjct: 296 LGLPLQEIAAGLAKLAPVKGRM---MPRQLGRLLLVDDSYNANPNSVGAAIDWLKEISTN 352 Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPR----------SEDPEKIR 429 R +V+ G GD +G+ A + D R E+ + + Sbjct: 353 RTLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFGSKHFEELDALV 412 Query: 430 AEIIHGIPGF------IEKGNRIEAIRTAIEML 456 +E+I+ I G + KG+R A+ +E L Sbjct: 413 SELINYINGVEGDVTLLVKGSRSAAMERVVEAL 445 >gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Porphyromonas gingivalis ATCC 33277] gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 129/374 (34%), Gaps = 29/374 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR IF A+ G DG+ F A+ +G VV ++D Sbjct: 16 VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ L A+ ++ +TGT+GK++ + + + + G + Sbjct: 68 LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + + + + + A+ G + G TN+ Sbjct: 128 H----------IGVPLTLLRLKAEHR---IAIIEMGANKPGDIAELTRIARPNFGLITNI 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ + + + DD ++ + G + +S G Sbjct: 175 GRAHLQGFGSLEGVRRTKEELYDFIRAEGGILFLNFDDDTLIDMSQ-----GLQSVSYGT 229 Query: 273 QGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + A + + + L G++ + NAL A + Sbjct: 230 SADATVRGLIVANNTPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEA 289 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 ++ L R +++ T I Y S+ L N ++ + + +V+ Sbjct: 290 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRAALDNFDSLHTDKPLVLILGD 349 Query: 392 GDR--DQGKRPIMG 403 + + KR M Sbjct: 350 MNELGAESKREHMA 363 >gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73] Length = 356 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 19/154 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI +A GA A + + N P ++VD+ A+ K ++ Sbjct: 54 FIERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 AVTG++GK++ + + + + G + Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNN 137 >gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] Length = 462 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 28/369 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N +S D+R ++ G +FVA+ ++ DGH +I A GA A +VS + N Sbjct: 24 NGISIDTRTLKMGDLFVALK-DQRDGHEYIKIAFENGAAAALVSR------VPDGLDENL 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+ L A + ++ +TG+ GK+S ++ I +G + Sbjct: 77 PLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTSTKEMLKSILIANGKTHAAERSY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGS 208 + P+ LA+ +E + D+ R KL Sbjct: 137 NNHWGV----------PLTLARMPKE-----TDFAVIEIGMNNPDEIRPLAKLAKLDVAI 181 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H+ + + AK +FE L + + + + Sbjct: 182 VLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQKVRSKLIT 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 L NK VT + DF+F F G+ NA+ A+GI+ Sbjct: 242 FGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAAAEAVGIE 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMILKNIRTIT-SGRI 384 + GR + G +D Y S+E + + SGR Sbjct: 302 RKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLSQSEASGRK 361 Query: 385 IVVFGCGGD 393 + + G G+ Sbjct: 362 VAILGDMGE 370 >gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58] gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria meningitidis MC58] Length = 455 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 132/410 (32%), Gaps = 35/410 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + ++ P+ L + + + G Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + RI V+ G G+ + + M A + A DN Sbjct: 351 ARMPAPRIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 400 >gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] Length = 454 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 73/442 (16%), Positives = 157/442 (35%), Gaps = 39/442 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I ++ + I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V Sbjct: 9 IADITGGERIGNDLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQ 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ + +++ L A+ ++ +A+TG+ GK++V V Sbjct: 69 KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I Q G F G + P+ L + + A+ G Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++ +K N+ H++ + A + L AI+ D Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGGA 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + S + + + + I+ ++ + + G+ Sbjct: 226 KWDEVLADKNVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA+ A+ + + +G + L+ L+ V GR E + + I Y + +++ Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345 Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD---------LADIAIVTD--D 418 + + R +++ G+ +G+ A AD ++++ D Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISELCD 405 Query: 419 NPRSEDPEKIRAEIIHGIPGFI 440 E +++ I + + Sbjct: 406 GIHFETHQEMIDYIKQHLDQAV 427 >gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 112/348 (32%), Gaps = 29/348 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R+I G +F A+ G +G+ F +A+ QGA VV T+ + I Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + + L A + +TG++GK++ + + + G + Sbjct: 64 IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + +A + Q + S + TN Sbjct: 124 HVGVPLTILSMSKD-TEIAIIEMGANHQLEIALLASISQPTIGY------------ITNY 170 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L++ ++ ++ DD+ E K + G G Sbjct: 171 GKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKDHNRFGFGHSKGGV 230 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K + + + + +G L G F N AA L + + + Sbjct: 231 T------WKSTSDNEFASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDI 284 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 LE R E + Y S+ + ++N Sbjct: 285 KTALEAYVPSMNRVE-WRKTQYNAVLMDAYNANPTSMSLSIQNFGKWH 331 >gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] Length = 453 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 89/460 (19%), Positives = 157/460 (34%), Gaps = 36/460 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + + + +INEV++D+R I G +FVA+ G + A A Sbjct: 7 QALADVLSAELIGADCQINEVTTDTRQITPGCLFVALKGERF---------DAHDFAADA 57 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +++ S + P LVV +TR L A+ + + P ++A+TG+SGK+SV Sbjct: 58 LAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I ++ G + G + P+ L + + A+ Sbjct: 118 TAAILRQCGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHI 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + NL H++ + AK +F L I ++ + Sbjct: 165 GEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIINADNNDW 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R G ++ Q T+ PLPG V Sbjct: 225 PHWQTQLVGKTVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL AA L ++G V L +L VPGR + + Y S+ Sbjct: 285 ANALAAAALATSVGASLEAVRVGLGQLQAVPGRLFPIQLKPGQLLLDDSYNANVGSMTAA 344 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKI 428 + + + R++V GD + +G+ A LA D +T + Sbjct: 345 AQVLAEMPGYRVLVAGDMAELGDEAEECHRQVGE-AARLAGIDKV-LT--------VGSL 394 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ I E+L + V+ V KG Sbjct: 395 SQLLSAASGQGEHFQDKAAVIARVAELLTEHTVITVLIKG 434 >gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640] gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06] Length = 452 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 74/408 (18%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGNDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R HI + L + A+I +DA Sbjct: 173 VLTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALALAAGLGLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides clarus YIT 12056] Length = 432 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 138/367 (37%), Gaps = 22/367 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V++DSR+ G +F+A+ G+ +G+ F +A+ G+ VV A +T Sbjct: 14 TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAG------DT 67 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VDN + L A+ + I+ +TGT+GK++ + + + + +G Sbjct: 68 HYILVDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNL 127 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ L + + + V + AS G + ++ + G T Sbjct: 128 N----------NPIGVPLTLLRLKAE---HELGVVEMGASHPGDIKELVEIAEPDYGIIT 174 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H++ + + K L++ L + + I D + + + A Sbjct: 175 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFIHQD--NPYLTQIAWGLNPVTYGE 232 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + G+ + L G++ NAL A + G+++A Sbjct: 233 EDNLYINGHVTGNSPYLTFEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGVEAA 292 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L + R + T I Y S+ + N + +G +++ G Sbjct: 293 KIDKALHEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLAAISNFHNMQAGGKMLILGD 351 Query: 391 GGDRDQG 397 + + Sbjct: 352 MRELGKD 358 >gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA47901] Length = 457 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae Taiwan19F-14] gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA04375] Length = 457 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + ++ L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC 43184] Length = 428 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 76/423 (17%), Positives = 142/423 (33%), Gaps = 39/423 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 16 VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT-------- 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN L A R I+ +TGT+GK++ + + + G + Sbjct: 68 ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 T + + + AS G + +D + G TN+ Sbjct: 128 HIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H++ + + K L++ + + I D+ Y KE+ G ++ G Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 V + + +GK L G + + NALVA + I + + Sbjct: 230 DETAFAWGCVVSCNPYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERI 289 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + R + T I Y +S+++ L N T+ ++ G Sbjct: 290 SRAITAYEPTNNRSQLKKTE-NNELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348 Query: 393 DRDQGKRPIMGKIALD----LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 + + ++ D + E +K + IEA Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLC-----GEHFQK---AAGKDFTTYATTEELIEA 400 Query: 449 IRT 451 +R Sbjct: 401 LRK 403 >gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella oralis ATCC 33269] Length = 436 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 63/425 (14%), Positives = 135/425 (31%), Gaps = 36/425 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR IF+A+ G DG+ F A+ +G +V + ++ Sbjct: 17 ITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVD------EQKYQKPDDSRY 70 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN K A + + + G +G + + + + G + Sbjct: 71 ILVDNCLKTYQQLAREHRRRF---HIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + + + + AS G + ++ ++ G TN+ Sbjct: 128 FNNDVGVPK----------TLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNV 177 Query: 213 GRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 G+ H+ + + ++ + + I AD+ Y + + Sbjct: 178 GKAHLQGFGSFEGVIRTKGELYDYLRAKQGGNKVFINADNPYLMNISQGLTLIKYGKRDD 237 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + + + + G + + N L AA + + GI A Sbjct: 238 CELSVKGEVTGCSPFLDFRWYNTQAGHWN-EVHTRMIGAYNIDNMLAAACIGLHFGISEA 296 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + E L K R + + I Y S+ ++N + + I + G Sbjct: 297 DIDEALSKYTPSNNRSQLT-VTNDNKLIVDAYNANPTSMHAAIENFKAMHVSPKIAILGD 355 Query: 391 GGDRDQGKRPIMGKIALDL--ADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRI 446 + + +IA +L AD DN E+ G F Sbjct: 356 MRELGNASKEEHQRIADELKTADF-----DNVWLVGEEFYN----TKSGFRKFHNIEEVK 406 Query: 447 EAIRT 451 A++T Sbjct: 407 TALQT 411 >gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] Length = 447 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 76/472 (16%), Positives = 168/472 (35%), Gaps = 44/472 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ +D+ L+ LS ++KI + DS+ +Q G +F A+ GN DGH F+ Sbjct: 1 MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKH 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A + A + ++ VD+T+ L S ++ +TG Sbjct: 59 ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ F + I + S + +++LT P + +A+ + V Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G Q ++++ + + + ++ +L K Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ D Y ++ + A S K + V I +++ Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAISG----DSVVIQTPEENYCL 272 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + N L+A L + + V+ L +L + P RFE + R G ++ Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329 Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 A+ ++ L + G+II++ G G + ++ + A D+ Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + F + + ++ DV+++ KG Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434 >gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] Length = 448 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 19/131 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L D+ ELI + + +N V +D+R I +G +FVA+ G + DGH +I Q Sbjct: 7 LSDIAKACDGELIGE---------DCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQ 57 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +GA +V + + + V +T + A + ++ +TG Sbjct: 58 AVQEGAVGVVSDRVVDVPN----------YVKVFDTTLAYGVIARLIRDAFKGPVVCITG 107 Query: 123 TSGKSSVASFV 133 ++GK++V ++ Sbjct: 108 SNGKTTVKDWL 118 >gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Riemerella anatipestifer RA-YM] gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer RA-GD] Length = 424 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 129/388 (33%), Gaps = 35/388 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N+VS DSR I G +F A G + AI +GA A++V + Sbjct: 14 NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQK-------EYENISK 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I V +T KFL + K I+A+TG++GK++ + + + F G Sbjct: 67 NIFYVPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNL 126 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 + P + V + A+ H + RL I + G Sbjct: 127 NNHIGVPLTLLSIKPE-------------HEIAVVEMGAN-HQKEIERLCQIAQPDYGYV 172 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ + K L++ L + ++ A+D E K C Sbjct: 173 TNFGKAHLEGFGGVEGVIKGKSELYDYLKKENKQILVNANDTIQVEKTKDYSKIICFGTL 232 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + + + + A L + GID Sbjct: 233 QSDYDFQLFYDNQRVGLIFEGEEMISQLTGAYNFTNIS---------AAVTLGLHFGIDK 283 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387 L+ E +++ R + + + Y +S+ + L+N + +++ Sbjct: 284 NLIKEAIQEYTPTNMRSQIMQKG-DKTLVLDTYNANPSSMAVSLENFALFNGCKTVIIGD 342 Query: 388 FGCGGDRDQGKRPIMGKIALDL-ADIAI 414 GD + + + + A L D I Sbjct: 343 MLELGDASKEEHKTILQKAQSLNFDKII 370 >gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] Length = 432 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 167/453 (36%), Gaps = 36/453 (7%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS + + + V++DSR+ AG +F+A+ G +G+ F QA+ G +V A Sbjct: 2 KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +N I++VDN + L A+ + ++ +TGT+GK++ + + Sbjct: 60 EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +S + G + P+ L + + + + + A+ G + Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + G TN+G+ H++ + + K L++ L KE + D + + Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIDHD--NAYL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M AH + + + +G L GE+ NAL Sbjct: 219 MDIAHGLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G+++ + E L R + T I Y S+ L+N Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T + +++ G R + + A + I + E + + Sbjct: 338 RNMTVKKKMLILG-------DMRELGAESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 P + N E I+ ++ +D +++ KG Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419 >gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] Length = 450 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 91/465 (19%), Positives = 166/465 (35%), Gaps = 54/465 (11%) Query: 11 FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +L+ L P+ E + +VS +D+R I+ G +F+A+ G DGH F+ AIAQ Sbjct: 7 ISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQ 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A +V S Y ++ +L V +T + + ++ VTG+ GK Sbjct: 67 GAIAAIVDSDYE--------NADVAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSVGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G G +N + P + + Sbjct: 119 TTTKELIAAVLATEGRVHKTFGN--------FNNEIGVPKTL-------LELDTEHDYAV 163 Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 VE + G Q R + G TN+G HI+ +++A A +P++S A Sbjct: 164 VEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSEEAIARA-KCELLAEMPEDSVA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D+ ++ + + L +++ + Sbjct: 223 ILNHDNPLLMATAQQVWSGEVVTYGLSGGDIQGVLTDNQ----------TIKVGEMRLPL 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPG N L A + +GID + + + K+++ GR + + Y Sbjct: 273 PLPGRHNASNFLAALAVAQVLGIDWSTLQNGV-KVNMPTGRSQRFTLPHDIILLDETYNA 331 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNP 420 ++ L+ + R I V G G+R +G+ L D +V D Sbjct: 332 APEAMTAALQLLADTPGKRKIAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVD-- 389 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463 +D + I GIP F + + + D ++ Sbjct: 390 -GKDAQAIAQS-AEGIPSECFTTHADL---VARLKTFVQAGDRIL 429 >gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] Length = 472 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 156/455 (34%), Gaps = 49/455 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + VS DSR ++ G +FVA+ G + DGH F+ Q +GA ++S + Sbjct: 32 DFEATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVA-------- 82 Query: 87 RSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++T L + AVTG+ GK+SV V+ +R+G + Sbjct: 83 ---IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTSVTRAVEAGLRRAGKAHA 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + P+ LA+ V + G I+ Sbjct: 140 SVKS----------YNNHIGVPLTLARMPRD---TQRAVFEVGMNHSGEITPLSGFIRPH 186 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A + T +G H++ + + A++ AD+ + + A AG Sbjct: 187 AVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAEKAGA 246 Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V S G +G L + A N +T + G F G N+L + A Sbjct: 247 EVWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVLLMLEA 306 Query: 325 IGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS 381 + +D L L + + GR E V G VD Y S++ LK + Sbjct: 307 LDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTLGAREV 366 Query: 382 -GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR IVV G + IA D+ + + + Sbjct: 367 AGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFC---------AGPLMKSLWEAL 417 Query: 437 PGFIEKGNRIEAIRTA---IEMLNKQDVLVVAGKG 468 P G A A + + DV++V KG Sbjct: 418 PPTRRGGYAESAAELAPQVVSAIRAGDVVMV--KG 450 >gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 471 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 41/472 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + ++ V DSR +++G +FVA G + DGH F Sbjct: 1 MIALSLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA- 59 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ P +VVD+ + L A + + ++A+TG Sbjct: 60 ----------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ + + F G + T Sbjct: 110 SAGKTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEE---------------T 154 Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238 + +E + G+ R G N+G HI ++ A ++ Sbjct: 155 KFLVLEMGARGIGHIRYLADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPA 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AI+ ADD + + R ++ A + ++ Sbjct: 215 EDGGAAILNADDPLVRAMASRTKARVILFGESDEADVRAENVRLTA-GGQPSFSLHTPSG 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357 D L GE V NAL AA + +G+ + + L + R E Sbjct: 274 CSDVTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTV 333 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADI 412 + Y S+ L+ + + GR V G GD + +G++A+ L Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGK 393 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 394 LVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 444 >gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii DSM 18315] Length = 428 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 31/391 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G IF A+ G+K DG+ + +A+A G V+ + Sbjct: 16 VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT-------- 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN L A R I+ +TGT+GK++ + + + G + Sbjct: 68 ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNN 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 T + + + AS G + +D + G TN+ Sbjct: 128 HIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H++ + + K L++ + + I D+ Y KE+ G ++ G Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 V + + +GK L G + + NALVA + I + + Sbjct: 230 DETAFAWGCVVSCNPYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERI 289 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + R + T I Y +S+++ L N T+ ++ G Sbjct: 290 SRAIAAYEPTNNRSQLKKTE-NNELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348 Query: 393 DRDQGKRPIMGKIALD----LADIAIVTDDN 419 + + ++ D + ++ Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLCGEH 379 >gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 12P80B1] Length = 494 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 78/434 (17%), Positives = 137/434 (31%), Gaps = 35/434 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + LT + + + + S+ L + Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246 G N+ + + + A + ++ P S Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301 + +S + + T++ Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P GE V NAL AA A+G+ + + L + GR + + G I D Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRL--SMDGYHIIDD 371 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ K + +I+V +F G D + ++AL D T Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-FTL 430 Query: 418 DNPRSEDPEKIRAE 431 N + I + Sbjct: 431 GNHMAHTAAAINEQ 444 >gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia phymatum STM815] Length = 470 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 139/455 (30%), Gaps = 35/455 (7%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E + + + VS+DSR G +FVA+ G++ D H F+ A Sbjct: 4 TLREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNV 63 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A++ + + A + +TR L A+ + ++AVTG++GK++ Sbjct: 64 SAVLATRTPDNFEVPALRVTG-------DTRTALGALANGWRQRFSLPLVAVTGSNGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + I + + ++ ++ P+ L + V Sbjct: 117 VKEMISSIFAAAVGEASRLATAGNFNNDV-------GLPLTLFRLNETHKLAVVELGMNH 169 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 L + N R+H ++ T +A L E A+ A Sbjct: 170 PGETALLGKIA---EPTVAVVNNAQREHQEFMATVEAVALEHA-AVIHALKPEGVAVFPA 225 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +DAY+ A ++ V +++I D + G Sbjct: 226 NDAYAGIWRVAATGNRIIDFALNTAEHTTEA-AVKGSLEGSELSIDTAEGHVDVTLQVLG 284 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAH 364 +NAL A +A G+ + LE V GR + G + D Y Sbjct: 285 AHNAHNALAATAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNA 344 Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421 +S+ + + S R++V+ G GD +G A D + R Sbjct: 345 NPDSMLAAIDVLAARPSPRVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALGEASR 404 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 + + + Sbjct: 405 --------DACAAYGDEAHHCDDVEALVAHLKQAA 431 >gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus] Length = 463 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 95/475 (20%), Positives = 173/475 (36%), Gaps = 43/475 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L ++ L+N + V DSR + G +FVA G + DGH F Sbjct: 4 MTLGEIAGITGGRLVNSDGSAEVTA------SVEYDSRKVVPGGLFVAFPGERVDGHDFA 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119 A T + P +VV+++ + ++ A + + PE ++ Sbjct: 58 S-----------AVVAAGAAGVLGTRDTGEPGVVVEDSLRAVATLAHEVVARLPELTVVG 106 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +TG+SGK++ ++ Q+ R G + G + P + +A + Sbjct: 107 LTGSSGKTTTKDYIGQLLSRLGPTVALPGSLN----------NELGFPYTVLQAGADTR- 155 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + A G +H + G N+G HI + + AK L E LP Sbjct: 156 --FLVLEMGARGVGHIRHLTGIARPSIGVVLNIGAAHIGEFGSVEGTALAKGELVEA-LP 212 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A++ ADDA + R + + + + + + Sbjct: 213 QTGVAVLNADDALVSAMASRTGAR-VVTVGEAAGAQLRAVDVTLDPAGRASYVLEHGERR 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G QV N+L AA + + G+ ++ L ++ +V R V G + Sbjct: 272 GTVRLRVAGRHQVANSLSAAAVALTAGLAFDDLVTALSEMSMVSDRRMDVFERPDGVTVI 331 Query: 360 VD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIA 413 D Y +S L+ + +++GR V G G+ + +G++A +L D Sbjct: 332 DDSYNANPSSTAAALRALAAMSAGRRTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRL 391 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I +N R AE+ ++ AI + L DV++V KG Sbjct: 392 IAVAENAR--PILDGAAEVGAWRGTARFAADQAAAIEILQDDLRADDVVLV--KG 442 >gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC 27126] Length = 431 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 127/369 (34%), Gaps = 25/369 (6%) Query: 43 GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102 G +++A+ G +GH FI A GA A++ S + ++ P+++V++T++ L Sbjct: 1 GAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVA---------TSLPVIMVEDTKEAL 51 Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 L + + +A+TG+SGK++V I +R G G + Sbjct: 52 GLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFN----------N 101 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 P+ L + + A+ G + + +K + N H++ + Sbjct: 102 DIGVPLTLL---RLEPQHEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGS 158 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 AK +F+ L + K + + Sbjct: 159 LLGVARAKSEIFKGLGSDGVAVVNVDSQFSEFWQGKLKQTKTLTFSPQQKNDADFRAEDI 218 Query: 283 CAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + D +PG V NALVAA L + +G V + L + Sbjct: 219 TIGLDGCAAFHLVCPQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMKQ 278 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKR 399 V GR + + Y S+ + + + + R++V+ G++ + Sbjct: 279 VSGRLNVKQLTEQVRLLDDTYNANVASVNAAIDTLSSFSGIRVLVLGDMKELGEKARFYH 338 Query: 400 PIMGKIALD 408 +G+ A Sbjct: 339 EQVGEYAKQ 347 >gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 492 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 64/428 (14%), Positives = 135/428 (31%), Gaps = 35/428 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ++ R+++ V+ DSR ++FV I G + DGH FI Sbjct: 4 MSLQEITT-----ACGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + QGA + + ++P ++V + + L A ++ + Sbjct: 59 PQVMEQGALCTLSEHP---------LSDSSPYILVSSCAQALKDIAEHYRRALGIKVVGI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPIYLA 171 +G+ GK+S + I ++ G + + + Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQ 169 Query: 172 KALSYLSSQGVTHVSVE-ASSHGLD--------QHRLDGIKLIAGSFTNLGRDHIDYHQT 222 + + L+ + + S ++ + D + Sbjct: 170 EMNRLAKIAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLS 229 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + A +A ++ + D+ + + ++ + F + Sbjct: 230 EIATVHAASFSKQDGTTVVPYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQ 289 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 I DF + +PG VYNAL + I +G+ + +E L V Sbjct: 290 SLGLKGTSCKIHTPAGDFTVIISIPGAHMVYNALAGIAVGIELGLTLDEIKTGIEALQPV 349 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRP 400 GR + T Y S++ L + T + ++ ++ G ++ Sbjct: 350 AGRNHMIETEHLTILDDC-YNANPVSMKASLDVLSTALTRKVAILGDMFELGTKELLLHR 408 Query: 401 IMGKIALD 408 +G A + Sbjct: 409 EVGTYAAE 416 >gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella salivae DSM 15606] Length = 446 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 142/426 (33%), Gaps = 36/426 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR+ IF+A+ G DG+ F A+ +G ++ + N + Sbjct: 24 ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAE------ADNDRL 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ K A ++ +TGT+GK++ V + G + Sbjct: 78 ILVDDCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNN 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + L ++ + V + AS G + + ++ G TN+ Sbjct: 138 DVGVPK-------------TLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNV 184 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + +A E+ ++ Sbjct: 185 GRAHLLGFGSFEGVKRTKGELYDYLKAHDGLLFLNESNADLVEMARQREMNRIMTYGQSD 244 Query: 273 QGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + T + + +D L G + + N L A + + G+ Sbjct: 245 DANVQGEVLDCAPFLRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVT 304 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L R + ++ I Y +S+ ++N + + + + Sbjct: 305 PEQINHALSHYIPANNRSQLE-VTAKNKLIVDAYNANPSSMAAAVENFKLMNVEHKMAIL 363 Query: 389 GCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIHGI 436 G + + ++ K+A D + T R ++ ++++AEI Sbjct: 364 GDMRELGEVSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRKFKNVDEVKAEIAAHC 423 Query: 437 PGFIEK 442 P Sbjct: 424 PENYYI 429 >gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] Length = 459 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 80/445 (17%), Positives = 152/445 (34%), Gaps = 38/445 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA++G DGH F+ + A + + Sbjct: 23 VSGVAFDSREVGPGDLFVAMLGEATDGHRFLD-----------QAFAQGAAGALVSADTP 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V ++ + L + I+ VTG+ GK+S + +R G Sbjct: 72 HPHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAKEALYAALER--------GW 123 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + T P+ LA+ + + + G ++ Sbjct: 124 HGRVHRSVKSYNNHTGVPLSLARMPRDVR---AGVFEMGMNHAGELSALTAMVRPHIAIV 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H ++ + A +A + L AII D + ++ A R+++ Sbjct: 181 TAIAPAHTEFFPDESAIADA-KGEIFQGLEPGGTAIIPYDSPHRDRLIAAAKPYAARIVT 239 Query: 270 VGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ ++ + + VT + ++ +F PG+ V NAL A G Sbjct: 240 FGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVLAAVDAAGG 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D L L +L + GR + I Y S+ L + GR + V Sbjct: 300 DLGLAGLALAELGGLAGRGARFRAANGALIIDESYNANPASMRATLAVLAE-EPGRHVAV 358 Query: 388 FGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 G GD + + I + ++ E + A + G F+ Sbjct: 359 LGEMRELGDDSADYHAGLAEPILAAHVEKVLLV-----GESMAPLAAA-LEGRVDFVHVT 412 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468 + A ++ DV+++ KG Sbjct: 413 DAKAAQAALASIIAPNDVVLI--KG 435 >gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] Length = 453 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 43/466 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 + + + + + +I EV++D+R + AG +FVA+ G + A A Sbjct: 7 QALADVLSAELIGADCQIIEVTTDTRQVTAGCLFVALKGERF---------DAHAFAADA 57 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V++ S + + P LVV +TR L A+ + + P ++A+TG+SGK+SV Sbjct: 58 VAAGAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I + G + G + P+ L + + A+ Sbjct: 118 AAAILRECGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHI 164 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + NL H++ + AK +F L I ++ + Sbjct: 165 GEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDW 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 R +G V Q T+ PLPG V Sbjct: 225 PHWQSMLNDKTVWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL AA L +++G V + L++L VPGR + + Y S+ Sbjct: 285 ANALAAAALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTENKLLLDDSYNANVGSMTAA 344 Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAI--------VTDDNP 420 + + + R++VV G + +G+ A LA D I + + Sbjct: 345 AQVLAEMPGYRVMVVGDMAELGADAEECHRQVGE-AARLAGIDKVIGIGPLSQALCAASG 403 Query: 421 RSEDPEKIRAEII--------HGIPGFIEKGNRIEAIRTAIEMLNK 458 E + A I H + + KG+R A+ + L + Sbjct: 404 SGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449 >gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citreicella sp. SE45] Length = 477 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 156/468 (33%), Gaps = 69/468 (14%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R I G +FVA+ + DGH F+ QA+ +GA A +VS D + Sbjct: 24 TGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSHVPEGVDPAR------ 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +LVVD+ + L + ++AVTG+ GK+S ++ + G Sbjct: 77 -LLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTKEMLRCVLGAQGKVHAAEKSY 135 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + + + G + T Sbjct: 136 NNHWGV----------PLTLARMPAD---VDFAVIEIGMNHPGEIAPLSRMARPHVAMVT 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H+ ++ + K +FE L A+I D S + + A V+ Sbjct: 183 IVAPAHLAAFESLEGIAREKGAIFEG-LEPGGTAVINGDLPVSPILREMAQARAAHVIDF 241 Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G G + +V + + +PG N + + A+G+D Sbjct: 242 GEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVLAVAHALGLDR 301 Query: 330 ALVLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNS-----------LEMIL 373 AL + L + GR ++ +D A+ +N Sbjct: 302 ALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGASLEVLAAAEPR 361 Query: 374 KNIRTITSGRIIVVFGCGGD---------RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + +T GR I G + R P MGKI D+ Sbjct: 362 DGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKI-----DVVHC--------- 407 Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + E+ +P G + +R A L+ DV++V KG Sbjct: 408 VGPLMRELWTALPYEKRGHWTEDSRAMA-ARVRHDLDAGDVVLV--KG 452 >gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491] Length = 452 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 32/443 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R + G +FVA+ G + D H F+ QA + I + P+ Sbjct: 30 ISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFPL 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T L A + + AV G++GK++ V I G + G + Sbjct: 86 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPALKTEGNLN- 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L S + + G I+ AG T + Sbjct: 145 ---------NEVGVPLTLL---RLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVV 192 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +H++ + + A+ LF E L E+ A++ DD + G R+ Sbjct: 193 QPEHLEGLGSLEGVAEAEGELFRE-LSPEAVAVVNLDDPLIPAQAAK--GRGKRLTFGRA 249 Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + L +V + +T+ +G+D+ GE NA A L +A+G Sbjct: 250 ESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSPEE 309 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389 + LE R V + Y S++ L +RT+ + GR + V G Sbjct: 310 CVRGLESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLG 369 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G + + +G A A + PRSE + + + F E G Sbjct: 370 DMLELGPGELEEHAALGTRAAGRAQLVAF--FGPRSEKGFQAASGLGDATAHFTEVGPL- 426 Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468 + L DV++V A +G Sbjct: 427 --VDWLTPRLKAGDVVLVKASRG 447 >gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] Length = 464 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 169/481 (35%), Gaps = 56/481 (11%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + KIN VS +S+ + IFVAI G G+ F+ +A+ +GA A+ S A + + Sbjct: 14 EKISDFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEK 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 A V ++ +FL FA ++ +TG++GK++V + + + Sbjct: 70 YAERA-----FFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYK 124 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G +N + P + L + + S G Sbjct: 125 GKKTEGN--------YNNHIGLPFTL-----LRAEKDDDFIILEMGMSDFGEIDLLGQIA 171 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAH 261 TN+G H+++ +T++ F AK + + K E ++ Sbjct: 172 LPDINVITNIGESHLEFLKTKENVFLAKTEIIPHIKSTLVINGDDKYLKNVKAENIEIVR 231 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNA 315 R + + + + + GK + + GE V N Sbjct: 232 ALNLRNNEYEDKTSDFYYGDIHFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNL 291 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 ++A + G++ ++ E ++ + + RF+ + N I Y + S++ L+ Sbjct: 292 VMAIAVAKQFGMEDKIISEAVKNIELTGMRFQII-ENGNTTYINDAYNASPMSMKKSLET 350 Query: 376 IRTITSGR-IIVVFGCG---GDRDQG-KRPIMGKIALDLADIAIV--------------T 416 I + + I+V G G+R+ R + I D + Sbjct: 351 FSLIFNDKLKIMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKEN 410 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DN E+ E ++ + + +R IR I VL+ A +G + I+ Sbjct: 411 MDNGNLEN-ESLKNKEFEYFDEKNKIKDR---IRE-ISESKA--VLLKASRGMKLEEIIE 463 Query: 477 N 477 Sbjct: 464 K 464 >gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium sp. 4-46] Length = 485 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 86/469 (18%), Positives = 153/469 (32%), Gaps = 38/469 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + ++ +S D+R ++ G +F AI G + DGH F+ A+A+GA A VV Sbjct: 12 LAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDALARGAGAAVV 71 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S A + A P D + A+ + I+AVTG+ GK+ + Sbjct: 72 SQARAADLAGAGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSVGKTGTKEAL 131 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G + + + P+ L + + + A Sbjct: 132 RHVLAAQGATHASVASYNNHWGV----------PLTLGRMPAASAFGVFEIGMNHAGEIA 181 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + + + +H L A+I D+ + Sbjct: 182 PLTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCG----LEPGGVAVINRDNPHF 237 Query: 254 KEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + A AG V + + ++V + V V G + PG Sbjct: 238 ERLRDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHT 297 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNS 368 N+L A+G D AL L +L GR E G + VD Y S Sbjct: 298 ALNSLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPAS 357 Query: 369 LEMILKNIRTITSG---RIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + L + I R I V G + + R + +A D+ V Sbjct: 358 VRAALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFV-----A 412 Query: 422 SEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ + G G + ++A+ + + D ++V KG Sbjct: 413 GPLMAELFEALPAGTRGVAAASSADLLDAV---VAEIRPGDAVMV--KG 456 >gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis SK564] Length = 457 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 75/485 (15%), Positives = 154/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI +A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIERAFENGAAVTLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLANLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 E ++ D + + G+ L+ + K +T Sbjct: 209 MAEGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLVERKDSLTFKTNFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYIALQEGVSEEQIRQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ + + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTENQDQFEDLVKQVKESLGANDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis 961-5945] Length = 452 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 103P14B1] gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis O35E] gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 101P30B1] Length = 494 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 78/434 (17%), Positives = 138/434 (31%), Gaps = 35/434 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + LT + + + + S+ L + Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246 G N+ + + + A + ++ P S Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301 + +S + + T++ Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P GE V NAL AA A+G+ + + L + GR + + G I D Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ K + +I+V +F G D + ++AL D +T Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430 Query: 418 DNPRSEDPEKIRAE 431 N + I + Sbjct: 431 GNHMAHTAAAINEQ 444 >gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 518 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 32/443 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R + G +FVA+ G + D H F+ QA + I + P+ Sbjct: 81 ISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFPL 136 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T L A + + AV G++GK++ V I G + G + Sbjct: 137 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPALKTEGNLN- 195 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L S + + G I+ AG T + Sbjct: 196 ---------NEVGVPLTLL---RLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVV 243 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +H++ + + A+ LF E L E+ A++ DD + G R+ Sbjct: 244 QPEHLEGLGSLEGVAEAEGELFRE-LSPEAVAVVNLDDPLIPAQAAK--GRGKRLTFGRA 300 Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + L +V + +T+ +G+D+ GE NA A L +A+G Sbjct: 301 ESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSPEE 360 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389 + LE R V + Y S++ L +RT+ + GR + V G Sbjct: 361 CVRGLESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLG 420 Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 G + + +G A A + PRSE + + + F E G Sbjct: 421 DMLELGPGELEEHAALGTRAAGRAQLVAF--FGPRSEKGFQAASGLGDATAHFTEVGPL- 477 Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468 + L DV++V A +G Sbjct: 478 --VDWLTPRLKAGDVVLVKASRG 498 >gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 440 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 133/396 (33%), Gaps = 46/396 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + Q + +N++ DSR I+ G IF+ + G + GH Sbjct: 1 MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA L+VD+ A K ++ Sbjct: 54 FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVI 102 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G + L P + Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNN-EIGLPYTILHMPEDTEKLVLEMGMD 161 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + + L L G + + T Sbjct: 162 HPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENIAKGKMGITA--------------- 206 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + A + ++ ++ G G+ + + K+ +K+++T Sbjct: 207 -----GLHGELIAPADPIINAFIPENQKISRFGLPGEDLFITKLI--EHKERLTFETNFL 259 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D P+PG++ NA++AA + + G+ A + + L+++ + R E+ + + + Sbjct: 260 DESITIPVPGKYNATNAMLAAYVGLHYGLTEAEINKALKEVELTRNRTEWKKSKNGADLL 319 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391 Y ++ +IL+ + I +GR I V Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADM 355 >gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis M13399] Length = 452 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC8] Length = 496 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 138/436 (31%), Gaps = 37/436 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + LT + + + + S+ L + Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246 G N+ + + + A + ++ P S Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-------GKD 299 + +S + + T++ Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDIDQIDS 313 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 P GE V NAL AA A+G+ + + L + GR + + G I Sbjct: 314 LPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHII 371 Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIV 415 D Y S+ K + +I+V +F G D + ++AL D + Sbjct: 372 DDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-L 430 Query: 416 TDDNPRSEDPEKIRAE 431 T N + I + Sbjct: 431 TLGNHMAHTAAAINEQ 446 >gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 456 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 144/389 (37%), Gaps = 27/389 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + VS+DSR I AG +FVA+ G DGH ++ A ++ + Sbjct: 16 GANATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAK----ARGAAAAIVATDAAEG 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P++ V TR L A+ G+ +LAVTG++GK++ + I + + + Sbjct: 72 LQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILKAAYGEA 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + P+ L ++ + + + G + + Sbjct: 132 VLAT--------QGNFNNDIGLPLTLL---RLNATHRAAIIELGMNHPGEIAYLAGIARP 180 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN R H+ + +A A+ L + A+ ADD ++K R+ G Sbjct: 181 TVALVTNAQRAHLAGMGSLEAIA-AEKGSIYTGLDETGVAVFNADDPWAKLW--RSQCRG 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R+++ G++ K + ++++ D + LPG+ NAL AA +A Sbjct: 238 LRMMTFGFEQAADVTGKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALA 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 GI V L + GR + + Y +S+ + + T G+ Sbjct: 298 AGISLTAVQAGLSAFRGLKGRLQRRTALHGAVLLDDTYNANPDSVRAGIDVLAA-TIGKK 356 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I+V G G +G+++ D Sbjct: 357 ILVLGDMG--------EIGEMSAQFHDEI 377 >gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila caviae GPIC] Length = 448 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 83/468 (17%), Positives = 167/468 (35%), Gaps = 41/468 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 ++ +D+ L+ +P + KI+ V+ DSR ++ G +F A+ G DGH F+ Sbjct: 4 ILLEDWVSLMLSDVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKH--- 58 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 A + A + +++V++ + L I+ +TG+ G Sbjct: 59 ---AAQAGAVAAVVSKDYCGDSFGLELIIVNDPTEALKEAGENQSHLFQGTIVGITGSIG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ F S + +++LT P + +A ++ + Sbjct: 116 KTTTKVFANTFLSSVYKV--------YASPKSYNSQLTVPLSLLMADG-----NEDFIIL 162 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S G + L ++ TN+ H + A+ +L + Sbjct: 163 EMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQGIAE--EKGRILQNSRVQL 220 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + D + +K+A ++ + + + K + V IS D DF Sbjct: 221 LPKDSPWYPHFIKQASSSEKFSFAFHNETADFYYKAIRK----DSVIISTPEGDIDFAIS 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 P + N L++ L + + ++ L + P RFE N I Y Sbjct: 277 FPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMRFEQSMRNGI-QVINDAYNAC 335 Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 ++ L I SG+II++ G G+ + I+ K AL A I Sbjct: 336 PEAMIAALDAIPHPSESGKIILILGHMAELGNYSEEGHTIVAKKALSKASIIFFI----- 390 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 E I+ + +G + + I ++ + + D++++ KG Sbjct: 391 GEKWLPIQHVLNYGSCEVSFHPS-AQGIEEILKKVVQQGDIVLL--KG 435 >gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 470 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 68/449 (15%), Positives = 144/449 (32%), Gaps = 38/449 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS DSR +Q +F+A+ G DGH + ++ + ++ + Sbjct: 27 RGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS------ALAGGAAGALVHKLPKGVQDDA 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+++V +T L + +I+AVTG+ GK+ + G++ + +G Sbjct: 81 PLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGKTGSKEMLALALSDQGVTHYSLGSF 140 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + + G + ++ T Sbjct: 141 NNHWGV----------PLSLARMPAGSR---YAIFEIGMNHPGEITPLVRMVRPHVAVIT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H+++ + AK +F+ + P + + ++ A + S Sbjct: 188 TVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAAAKAGITHIRSF 247 Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G L V + + + + G N+L A+G D Sbjct: 248 GNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAVLLAVEALGADV 307 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT-----SNSLEMILKNIRTITSGR 383 L L + GR + G +D ++ + L +++ GR Sbjct: 308 NLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAALASVKPAKGGR 367 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G G + M + + T + + + + G Sbjct: 368 RIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTAGILTAHLHDALAEQRRGG----- 422 Query: 441 EKGNRIEAIRTAIEML-NKQDVLVVAGKG 468 + +A+ ++ DV++V KG Sbjct: 423 HAAD-SDAVSALVKAAVRPGDVVMV--KG 448 >gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 423 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 111/348 (31%), Gaps = 29/348 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R+I G +F A+ G +G+ F +A+ QGA VV T+ + I Sbjct: 13 VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + + L A + +TG++GK++ + + + G + Sbjct: 64 IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + +A + Q + S + TN Sbjct: 124 HVGVPLTILSMSKD-TEIAIIEMGANHQLEIALLASISQPTIGY------------ITNY 170 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + K L++ ++ ++ DD+ E K + G G Sbjct: 171 GKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKDHNRFGFGHSKGGV 230 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K + + + + +G L G F N A L + + + Sbjct: 231 T------WKSTSDNEFASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDI 284 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 LE R E + Y S+ + ++N Sbjct: 285 KTALEAYVPSMNRVE-WRKTQYNAVLMDAYNANPTSMSLSIQNFGKWH 331 >gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 105 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 48/99 (48%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 + S + + N P++ + LS A + Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFMIRP 102 >gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. WH 7803] gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. WH 7803] Length = 471 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 74/452 (16%), Positives = 142/452 (31%), Gaps = 44/452 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G F+ + G + DGH F+ A+ +GA+A V+S + + Sbjct: 32 VCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAH-----AVPDGLLH 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T + A+ + ++AVTG++GK++ ++ P Sbjct: 87 WKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELIRSALA----------PLGD 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + +N P+ L A ++ V A + RL + Sbjct: 137 VQASDSNNNNDIGVPLTLLGAHRSHAAVVVEMGMRGAG----EIERLSCCAEPEIAVITN 192 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +A + L +I A DA ++ + R +S+ Sbjct: 193 IGTAHIGRLGSRAAIASAKCEITAALSPRGVVVIPAGDALLEDALSRCWTGRILRVSLEG 252 Query: 273 QGKF----------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 L + Q S+ + F PL G N ++A + Sbjct: 253 DEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQGLRFRCPLEGRHNARNFMLALAVA 312 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITS 381 + + + + S GG +D + ++ + + Sbjct: 313 SELEVPLHSLEAMDVAMPGG-----RNKRLSMGGVSLLDETYNASPEAVLAALELLAHQP 367 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR V G G R + + A+DL D +V D + + Sbjct: 368 GRRFAVLGTMLELGSRSVELHRRVAQRAVDLKLDGLVVVA----GGDEGDVMEATACSLS 423 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 F +A L D +++ A +G Sbjct: 424 RFTRVQTPEDAALPLRGWLKPGDTVLLKASRG 455 >gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] Length = 494 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 78/434 (17%), Positives = 138/434 (31%), Gaps = 35/434 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G + LT + + + + S+ L + Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246 G N+ + + + A + ++ P S Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301 + +S + + T++ Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 P GE V NAL AA A+G+ + + L + GR + + G I D Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 Y S+ K + +I+V +F G D + ++AL D +T Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430 Query: 418 DNPRSEDPEKIRAE 431 N + I + Sbjct: 431 GNHMAHTAAAINEQ 444 >gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 447 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 76/472 (16%), Positives = 169/472 (35%), Gaps = 44/472 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ +D+ L+ LS ++KI + DS+ +Q G +F A+ GN DGH F+ Sbjct: 1 MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A + A + ++ VD+T+ L S ++ +TG Sbjct: 59 ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ F + I + S + +++LT P + +A+ + V Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G Q ++++ + + + ++ +L K Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ D Y ++ + A S K + + V I +++ Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAIS----RDSVVIQTPEENYCL 272 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + N L+A L + + V+ L +L + P RFE + R G ++ Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329 Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 A+ ++ L + G+II++ G G + ++ + A D+ Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + F + + ++ DV+++ KG Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434 >gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus SJ1] Length = 243 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 17/190 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ Sbjct: 1 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD T L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++V ++ I + G + + R T + + + Sbjct: 108 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 167 Query: 177 LSSQGVTHVS 186 + Sbjct: 168 CRIIERFTWN 177 >gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 134 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 18/151 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M +L+ L+ + VS+DSR I+ G +FVA+ G + DGH ++ Sbjct: 1 MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119 Q A+GA +V P LVV +TRK L+ + + A Sbjct: 52 DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 VTG+SGK++V + I + G G Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGHL 134 >gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alistipes shahii WAL 8301] Length = 417 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 63/382 (16%), Positives = 119/382 (31%), Gaps = 51/382 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I+ IF A+ G+ DG+ F+ +A+ +GA V I Sbjct: 14 ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQR-----I 68 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+T K L A ILA++G++GK++ V ++ G + Sbjct: 69 VLVDDTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNN 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + V + AS+ G + G TN+ Sbjct: 129 H----------IGVPLTLL---AMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNI 175 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H++ + K LF+ L A + ADD + + S Sbjct: 176 GLAHLEGFGGPEGVRRGKGELFDFLAANGGHAFVPADDEILTGMAAERDSLADEYYSASL 235 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + N A + + + Sbjct: 236 ADGIENHLEGSYNRF--------------------------NIAAAVAVGRYFDVPDERI 269 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITSGRIIVVFG 389 + R + +GT+ Y +S+ + N R +++ G Sbjct: 270 RHAIASYVPDNNRSQRIGTSRNTLVADC-YNANPSSMRASVGNFLAEPLEERQRRVLILG 328 Query: 390 CG---GDRDQGKRPIMGKIALD 408 GD + + + ++A Sbjct: 329 DMLELGDWSEREHAAIIEMAAQ 350 >gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 105 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 48/99 (48%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 + S + + N P++ + LS A + Sbjct: 64 TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFMIRP 102 >gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 464 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 126/384 (32%), Gaps = 26/384 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR------IPEGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +L+VD+ + L + ++AVTG+ GK+S + + G + Sbjct: 73 GEDGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHAS 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + P+ LA+ + + + Sbjct: 133 VASYNNHWGV----------PLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMV 182 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + + + D A M E A I D + RA G R Sbjct: 183 TTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNADIAEAD------ILRAAARGAR 236 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 LS G + L V F G NAL A C A+G Sbjct: 237 QLSFGRAAQDYRLTGVEVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALG 296 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGR 383 D+ L+ LE+ GR + GG Y S+ L+ + R Sbjct: 297 ADAGQSLQGLERWTPYKGRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTPGTR 356 Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL 407 + G + + P+ +A Sbjct: 357 RVAFLGDMKELGPEELPLHAGLAA 380 >gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis CO72] Length = 494 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 77/422 (18%), Positives = 137/422 (32%), Gaps = 35/422 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R IQAG +F+AI G + D H FI A QGA A +V + + P Sbjct: 35 IVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VVDCDMPQ 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 L+V +T+ L HP+ ++A+TG+SGK++ + I + + G + Sbjct: 86 LLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLITRGNLN 145 Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 LT + + + + S+ L + G Sbjct: 146 NDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNIGTAHLGEFGGRA 205 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAIIYADDAYSKEVMK 258 N+ + + + A + ++ P S + Sbjct: 206 NIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASKFTNLYLSFGERAVPIEQAGLEAT 265 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLFPLPGEFQVY 313 +S + + T++ P GE V Sbjct: 266 DQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLPVHLPFIGEHNVA 325 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NAL AA A+G+ + + L + GR + + G I D Y S+ Sbjct: 326 NALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLPMD--GYCIIDDTYNANPTSMLAA 383 Query: 373 LKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 K + +I+V +F G D + ++AL D +T N + I Sbjct: 384 AKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTLGNHMAHTAAAIN 442 Query: 430 AE 431 + Sbjct: 443 EQ 444 >gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 477 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 94/471 (19%), Positives = 160/471 (33%), Gaps = 73/471 (15%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N VS D+R +Q G +FVA+ + DGH F+ QA+ GA A +V + + Sbjct: 24 NGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDSGAGAALV------THVPEGVGEDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L+V++ + L + + AVTG+ GK+S + I G + + Sbjct: 77 PLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTSTKEMLLAIFGDQGKAHASVD 136 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + P+ LA+ + + + G + A Sbjct: 137 SYNNHWGV----------PLTLARMPRD---TDYAVIEIGMNHPGEIAPLAKQAQPHAAM 183 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ H++ + A K +F+ + A+I AD +S V+ +A G R Sbjct: 184 VTNVAAVHLEAFKDVAAIAVEKASIFDGM-EPGGVAVINADHDHSDIVLDKALERGLRET 242 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G +G L V V G + PG NAL A + A+G D Sbjct: 243 TFGRKGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALAVAEALGAD 302 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-------VDYAHTSNSLEM---------I 372 AL ++ L + GR + Y S+ + Sbjct: 303 RALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAALEVLAASEV 362 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTD-------DNP- 420 +I ++ GR I G + + +A A D+ DN Sbjct: 363 THDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVGPLMKAFYDNLP 422 Query: 421 ---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 R D + E++ G+ L+ DV+++ KG Sbjct: 423 EHQRG-DWTETAEEMLQGLR----------------ARLDSGDVVLI--KG 454 >gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA1] Length = 485 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +A+TG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315 + +V A T++ + + P+ + Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ E I Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431 >gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] Length = 455 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 132/386 (34%), Gaps = 25/386 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I L + + + + ++ + +D+R + G +F+A+VG++ DGH F+ QA A Sbjct: 1 MIPVTLSTLADAVGGT-LNGADLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEA 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A+VVS P ++V++T L + L + LA+TG+ G Sbjct: 60 SGAAALVVSRPVDSA---------LPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K+SV I + G + G + TP + Sbjct: 111 KTSVKEMTAAIFAQVGPTLATRGNLNNTIGVPMTLLELTPE-------------HRFAVI 157 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + A+ H + + L + N R E L + AI Sbjct: 158 ELGAN-HAGEIRYTSSLALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHLGEAGTAI 216 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + DD ++ +++R + S + + P Sbjct: 217 VNLDDEWAPWLLERLGDQNRFTYSSRGPADLWASALSRDADGCYHFLLHRGEAEVLVRLP 276 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG QV NAL AA L + + L + V GR + + I Y Sbjct: 277 LPGRHQVDNALAAAALASTAELSLEQIASGLAQAPTVAGRTQMTALSGEVMLIDDSYNAN 336 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG 391 + S + + G ++VFG Sbjct: 337 AASTMAAIDLMAE-RDGSSLLVFGDM 361 >gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M0579] Length = 463 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 26 LPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 73 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 74 AAVVVSREDCAALKDALKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAV 133 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + + T ++ P+ L + + + G Sbjct: 134 LRHRFGNEAVLATTGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 184 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 243 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 244 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 302 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 362 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408 >gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae P1031] Length = 457 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 77/485 (15%), Positives = 155/485 (31%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G DGH Sbjct: 1 MKL------TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLTPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411 Y ++++IL+ I G+ I V + + +I L L+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ + ++ E L D ++ Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029] gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029] gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] Length = 447 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 76/472 (16%), Positives = 168/472 (35%), Gaps = 44/472 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++ ++ +D+ L+ LS ++KI + DS+ +Q G +F A+ GN DGH F+ Sbjct: 1 MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A + A + ++ VD+T+ L S ++ +TG Sbjct: 59 ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ F + I + S + +++LT P + +A+ + V Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + S G Q ++++ + + + ++ +L K Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ D Y ++ + A S K + V I +++ Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAISG----DSVVIQTPEENYCL 272 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + N L+A L + + V+ L +L + P RFE + R G ++ Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329 Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 A+ ++ L + G+II++ G G + ++ + A D+ Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + + + + + F + + ++ DV+++ KG Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434 >gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 495 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 74/427 (17%), Positives = 139/427 (32%), Gaps = 47/427 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + VS+D+R ++ G +FVA+ G+ DGH ++ +A +GA A +VS Sbjct: 25 PALPDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEASG 84 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138 P+L+V +TR L A + K + ++ +TGT+GK++ + + Sbjct: 85 ---------PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135 Query: 139 RSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV------- 187 R G + + + L + + Sbjct: 136 REGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAV-LEVGIRKPGDMEYLSSVLVSDVSIV 194 Query: 188 -EASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 L+ ++G+ + N R F + + Sbjct: 195 TSVGEGHLETLGSIEGVWKEKSNLLNWVRPGGGIVLPLDLLFRYPASPVFRERQRRFFFV 254 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D R+ G +LS + + + + + F + P Sbjct: 255 ALDPDPGDSARASRSVPEGSTILSGTLRKEEGGTWILSG---------TTGPESFSWSMP 305 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 P +AL+A A+G+ + +HLEK +PGR + T + Y Sbjct: 306 SPSSILAMDALLALAAGNALGVSLSEGAKHLEKFAPLPGRMQEKRTPEGALLLLDHYNSN 365 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-SED 424 SL+ + + + G GK+ L D+ + +D+ R Sbjct: 366 PLSLQGAFQWCTEVWKKEASLAGGGP-----------GKLLAVLGDMLELGEDSSRLHRK 414 Query: 425 PEKIRAE 431 I AE Sbjct: 415 AGLIAAE 421 >gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paraprevotella xylaniphila YIT 11841] Length = 432 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 22/361 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR G +F A+ G+ +G+ F QA+ QG +V A + + Sbjct: 16 VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEA------EYAVGDDERY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++ L A + ++ VTGT+GK++ + + + G + Sbjct: 70 ILVEDVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNN 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + T + + AS G + + + G TN+ Sbjct: 130 HIGVPKTLLELTSE-------------HTIAVIETGASHPGEIKALAEIVDPDFGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H++ + + K L++ L K I D K + H Sbjct: 177 GMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQICYGSPCDEV 236 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + E ++ L G + + N L AA + G++ V Sbjct: 237 LSVEGEVLECAPFLKFRWRPAGGEWQEV--QTGLIGAYNMQNLLAAATIGRTFGVEVDAV 294 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 L R + + Y S+ ++N R + R + + G G Sbjct: 295 NRALAAYEPKNNRSQLT-ETDDNKLLVDAYNANPTSMRAAIENFRDMKVERRMAILGDMG 353 Query: 393 D 393 + Sbjct: 354 E 354 >gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 7169] gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC1] Length = 494 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPS 166 + G + T Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDE 160 >gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 433 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 66/378 (17%), Positives = 128/378 (33%), Gaps = 27/378 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + + +S+ ++ G IF A+ GN DG+ F +AI+ GA +V + S+ Sbjct: 14 SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDN-------IKYSFSHK 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I V N L A + I+A+TG++GK++ I + Sbjct: 67 NIFFVKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSKKYEVVHST-- 124 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ P+ L S + ++ V + A+ Q I G Sbjct: 125 -------EKNFNNHIGIPLTLL---SMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYI 174 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G+ H++ + + K+ L+ L + + DD ++ H+ G Sbjct: 175 TNFGKAHLEGFKNIKGVIRGKLELYNFLKKNKKKVFVNGDDP-----IQLIHSLGIDRYI 229 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + K + + KD + L G + +YN A + + Sbjct: 230 FSERINSDVDVPIKYFWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPL 289 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + +E R + + + + Y +S+ L I G I + G Sbjct: 290 KKIKKAVEDYIPNNYRSQILEKENVKIIVDC-YNANPSSMIETLTFFNKI-QGNKIAILG 347 Query: 390 CGGDRDQGKRPIMGKIAL 407 + + KI Sbjct: 348 DMLELGSFSKKEHAKIIS 365 >gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya dadantii Ech703] gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech703] Length = 453 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 133/393 (33%), Gaps = 27/393 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 I EVS+D+R + AG +FVA+ G D H + A V+ Sbjct: 19 GENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDY---------AADAVAGGAGALVVCK 69 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P LVV +TR L A+ + + ++A+TG+SGK+SV I ++ G Sbjct: 70 RLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVL 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + P + + A+ G + + +K Sbjct: 130 YTAGNFNNDIGVPLTLLRLAPE-------------HDFAVIELGANHIGEIAYTTELVKP 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H++ + AK +F+ L I + ++ A Sbjct: 177 ETALVNNIAAAHLEGFGSLAGVAQAKGEIFDGLPENGVGIINADSNDIARWQPSLAGKTL 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R S V A T+ D PLPG + NAL A L I+ Sbjct: 237 WRFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAIS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G V L +L VPGR + + Y S+ + + + ++ Sbjct: 297 VGASLEAVKLGLSRLQAVPGRLFPILLAPGKRLLDDSYNANVGSMTAAAQVLAEMPGYQV 356 Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413 +VV G + +G A LA D Sbjct: 357 MVVGDMAELGQEAEACHRQVG-AAAKLAGIDKV 388 >gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 456 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 71/419 (16%), Positives = 144/419 (34%), Gaps = 34/419 (8%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + +++ + + + + +S DSR I +F+AI G DGH F+ + I +G Sbjct: 7 EVNKILGNIKNWDNLTNQFQSFKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +A+V+ + + P V +T + A K ++ +TG+ GK++ Sbjct: 67 KAVVI-----KEGMQNLLPYKFPFWTVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTT 121 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + ++ ++ G + LT + +E Sbjct: 122 TKEMMGEVLKQLGKIKLSQLNFN----NEIGVGLTILDS-----------DFKDKTLILE 166 Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 GL Q + + TN+G HI +++ AK + + L PK I Sbjct: 167 MGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENITYAKCEITKHLNPKGVVIIP 226 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D + + + + +V + K L K + SV +D F Sbjct: 227 ANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSLNKTNLQGFYNRSNNSVIIEDKIFEISF 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G +N L + +GI + + GR + + + Y + Sbjct: 287 QGFHNAFNFLFVYAVAKELGIKFKDT--NKFNFVSLNGRNKILKSKKTTIYDET-YNASP 343 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI---AIVTDDN 419 S++ + N+ ++FG G++ Q + ++ +DI + D N Sbjct: 344 ESVKACINNLLD-NPNNHFLIFGSMQELGNKSQKYHKDLFELIDR-SDIKKCIFICDKN 400 >gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] Length = 445 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 82/439 (18%), Positives = 157/439 (35%), Gaps = 33/439 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + DSR +Q+G +F+A+ +DGH +I A +GA +V + D I + Sbjct: 27 FAGFAIDSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPA--DHQQLIDAG 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +LVV +T L++ A+ + ++AVTG+SGK++V++ ++ + G Sbjct: 85 HALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSACLRTLF------PTSAGT 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++ +P A + + S G + ++ G Sbjct: 139 TGNYNNHIGLPLSMLGTPADAA----------IGVFELGMSGSGEIDALAELLQPQIGLI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI + A AK+ L + +R + + Sbjct: 189 TNVGSAHIGKLGSFAAILEAKLELAR---HCSCLIVDGDGQELLDRARQRHQDVLSVGFT 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G Q ++ ++ P +F V N+L+A + +G+D Sbjct: 246 AGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGLKLGLDQ 305 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A + L ++ + P R+E Y SL L++ R+ V+ Sbjct: 306 AALQAGLRRVQLPPLRWELHRRGGNTYIFDC-YNSNPGSLRAALEDFSHYPGYRVAVLGE 364 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 +R + D+ + D R +++ A+I P + R+ Sbjct: 365 MRELGAFSEREHRKVASAINCDLVLTYGDEARFL-ADELGADIATHCPTLEDVVARLANC 423 Query: 450 RTAIEMLNKQDVLVVAGKG 468 + A V++V KG Sbjct: 424 QNA--------VVLV--KG 432 >gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis glossinidius str. 'morsitans'] gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis glossinidius str. 'morsitans'] Length = 455 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 164/455 (36%), Gaps = 43/455 (9%) Query: 25 WRERKINEVSSDSR--HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + I V +DSR +FVA+ G + D H F QA+A GA A++V+ Sbjct: 19 GDDCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNR------- 71 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + + P LVV +TR+ L + + + P ++A+TG+SGK+SV I ++ G Sbjct: 72 --RLPLDVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGR 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + TP + + + A+ G D + Sbjct: 130 VLATEGNFNNDIGVPLTLLRLTP-------------AHDFAVIELGANHLGEIAWTTDLV 176 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + NL H+ + AK +F L + + H Sbjct: 177 RPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGLPANGCGILNADSHDWPHWQQVLGHK 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A R G + + + T+ + PLPG+ V NAL A L Sbjct: 237 AVWRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALA 296 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++G + V L +L VPGR + + + Y S+ + + + Sbjct: 297 LSVGAELPAVAAGLAQLQAVPGRLFPIALGAGRLMLDDSYNANVGSMTAAAQVLAEMPGY 356 Query: 383 RIIVV--FGCGGDRDQGKRPIMGK-IALDLADIA--------IVTDDNPRSEDPEKI--- 428 R++VV G+ +G+ +AL D ++ + + R E + Sbjct: 357 RVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGEASGRGEHFQDKTAL 416 Query: 429 ---RAEII--HGIPGFIEKGNRIEAIRTAIEMLNK 458 A+++ + + KG+R A+ + L + Sbjct: 417 TARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQE 451 >gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M6190] Length = 436 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 129/401 (32%), Gaps = 34/401 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ + +DSR I+AG +F A+ G + D H F+ + R Sbjct: 6 KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + L VD+T L A + +TG+ GK++V + + +R Sbjct: 54 EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++ P+ L + + + G K Sbjct: 114 DAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A N R H+ + L + A+I +DA N Sbjct: 164 PNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNL 223 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + G +H + + + + + + P+PG V+NA AA L + Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 281 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ V E L+ + GR I Y +S++ + + + + R Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 341 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 I V G G+ + + M A + A DN Sbjct: 342 -IFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDN 381 >gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 638R] Length = 432 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 168/453 (37%), Gaps = 36/453 (7%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS + + + V++DSR+ AG +F+A+ G +G+ F QA+ G +V A Sbjct: 2 KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +N I++VDN + L A+ + ++ +TGT+GK++ + + Sbjct: 60 EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +S + G + P+ L + + + + + A+ G + Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + G TN+G+ H++ + + K L++ L KE + D + + Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M AH+ + + + +G L GE+ NAL Sbjct: 219 MDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G+++ + E L R + T I Y S+ L+N Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T + +++ G R + + A + I + E + + Sbjct: 338 RNMTVEKKMLILG-------DMRELGTESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 P + N E I+ ++ +D +++ KG Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419 >gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase [Streptococcus pneumoniae Hungary19A-6] Length = 457 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI +A GA + + N P ++VD+ ++ K ++ Sbjct: 54 FIERAFENGAAVTLSEKKVA----------NHPYILVDDVLTAFQTLSAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSITYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MDSGSLLLAPAD----TIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I I ED ++ ++ + ++ E L D ++ Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|149007558|ref|ZP_01831193.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] gi|147760917|gb|EDK67887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] Length = 122 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEII 433 + T +G+I +V G G++ + +R G + +I +T D+P EDP I EI Sbjct: 1 MVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYEDPMAIADEIS 60 Query: 434 HGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I +E +R EAI+ A+ + N + D +++AGKG + I+ ++ D + Sbjct: 61 SYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQGKKESYPGDTAVAEN 120 Query: 492 IL 493 L Sbjct: 121 YL 122 >gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA1] gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA1] gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA2] gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA2] gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA1] gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA1] gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA2] gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA1] gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA2] gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA1] gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA2] gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL086PA1] gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA4] gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA1] gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA3] gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA3] gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL067PA1] gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA1] gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA1] gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA2] gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA1] gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA1] gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA2] gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA2] gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA3] gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL078PA1] gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA2] gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA3] gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA1] gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA2] gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA1] gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA2] gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL097PA1] gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA3] gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA2] gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA3] gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL092PA1] gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA2] gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA1] gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL020PA1] gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA2] gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes 266] Length = 485 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +A+TG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315 + +V A T++ + + P+ + Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ E I Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431 >gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp. EAN1pec] Length = 447 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 86/470 (18%), Positives = 149/470 (31%), Gaps = 41/470 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I E+ + + D R + G +FVA G DGH + QA Sbjct: 1 MIPLSLGEIAAVVGGTVAGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 GA A + S P +VV++ + L A+ + + + ++ +TG Sbjct: 61 RAGAVATLGSRPTP-----------LPTVVVEDAQSALQALAAHVVARLRDGLTVVGLTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + IG + P+ +LA Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATIGSLNNELGVPLTMLRADPATRFLA----------- 158 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + N+G+ H+ +++A K L + L Sbjct: 159 --LEMGARHIGDIAELTGLVAPDIAVVLNVGQAHLGEFGSREAIARTKGEL-VQGLAPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + V L + T+ Sbjct: 216 TAVLGADDPRVVAMRSLTDGPVLTFGRV-EHADVRVLDLALDRLGRPSFTLRTADASAPV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G Q NA AA +A G+ + L + R E + Y Sbjct: 275 TLPLVGGHQALNASAAAAAGLAAGVPLDVAAAALATASLSQWRMELRDLACGATLLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 +S L + I GR I V G GD + + +G+ A AD+ + Sbjct: 335 NANPDSTRAALDALAAIEGGRRIAVLGEMRELGDGSEAEHRAVGEYAASRADVVVAV--- 391 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 E I G + + A+ L +V++V A +G Sbjct: 392 --GEAARPIAD--GAG-ERVVALADNNAAVDWLRGHLAAGEVVLVKASRG 436 >gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha14] gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis 8013] Length = 452 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 130/408 (31%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S+ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus pneumoniae CDC3059-06] gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pneumoniae GA41317] Length = 457 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 76/482 (15%), Positives = 158/482 (32%), Gaps = 57/482 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I + ++ +++ ++ + ++ E L D +++ Sbjct: 382 TVIFYGQDIAQ--LAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILL-- 437 Query: 467 KG 468 KG Sbjct: 438 KG 439 >gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] Length = 478 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 113/315 (35%), Gaps = 21/315 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R + G +FVA+ + DGH F+ A+ +GA A +V + + Sbjct: 24 DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALV------THVPEGVAEDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+V++ K L + + ++AVTG+ GK+S + I G + + Sbjct: 77 PLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSY 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + + +H + L + + Sbjct: 137 NNHWGV----------PLTLARMPADTEYAVIEIGM----NHPGEISPLAQMAKPDVAMV 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 A + + L A+I AD ++ +M +A + R + Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRRLREVEF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G G L V + V +G F PG NAL A A+G D A Sbjct: 243 GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADLA 302 Query: 331 LVLEHLEKLHVVPGR 345 L L + GR Sbjct: 303 LAAASLGRWTPYKGR 317 >gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale ART12/1] Length = 104 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 10 DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L++ L+ ++ ++I ++ DSR ++ +FV I G + DG+ FIPQAI GA Sbjct: 2 TIEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 AI+ + ++ ++ V N R+ + L Y + + Sbjct: 62 CAIMTEKDVE-------VPADITVIKVPNMREAMELAVPYFYDYPGKKCV 104 >gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442] Length = 463 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 72/408 (17%), Positives = 130/408 (31%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+ G +F A+ G + D H F+ + Sbjct: 26 LPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 73 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 74 AAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 133 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 134 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 184 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 243 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 244 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S+ + + Sbjct: 302 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVL 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 362 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408 >gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.4-21] Length = 99 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L P + +++ + DSR ++AG +FVAI G++ DG+ FI A+ GA A+V Sbjct: 4 LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109 + S + + N P++ + LS A Sbjct: 64 TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVF 98 >gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] Length = 432 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 168/453 (37%), Gaps = 36/453 (7%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS + + + V++DSR+ AG +F+A+ G +G+ F QA+ G +V A Sbjct: 2 KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +N I++VDN + L A+ + ++ +TGT+GK++ + + Sbjct: 60 EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +S + G + P+ L + + + + + A+ G + Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + G TN+G+ H++ + + K L++ L KE + D + + Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M AH+ + + + +G L GE+ NAL Sbjct: 219 MDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G+++ + E L R + T I Y S+ L+N Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T + +++ G R + + A + I + E + + Sbjct: 338 RNMTVEKKMLILG-------DMRELGTESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 P + N E I+ ++ +D +++ KG Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419 >gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71] Length = 370 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 131/396 (33%), Gaps = 44/396 (11%) Query: 1 MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + ++ + DSR I G +FV + G + DGH Sbjct: 1 MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + SN P ++VD+ AS K ++ Sbjct: 54 FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MASGSLLLVPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391 Y ++++IL+ I G+ I V Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADM 357 >gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL074PA1] gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA1] gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL007PA1] gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL056PA1] gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA1] gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL045PA1] gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA1] gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL038PA1] gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA2] gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA2] gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA1] gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL099PA1] Length = 485 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 135/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +A+TG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315 + +V A T++ + + P+ + Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L ++ V RD R L D+ + D+ R + E R Sbjct: 364 AASLTSMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ E I Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431 >gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] Length = 459 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 153/460 (33%), Gaps = 34/460 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L + +L+N + ++ +S+D+R + AG +F+A+ G + D H F+ Sbjct: 4 MSLAQIAQVTDGQLLNCPDAT------QTVSHISTDTRTVAAGALFLALQGERFDAHQFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ A + + P ++V +TR L A+ + + I+A+ Sbjct: 58 AQAV--------AKGAVAAVVSRPLADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK+++ I Q++ G + Q TP Sbjct: 110 TGSCGKTTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPD-------------D 156 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + A+ G +K N+ H+ + + AK +F L Sbjct: 157 RYAVVELGANHPGEIAWTTSLVKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSG-LSD 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A+I AD + + + F T+ Sbjct: 216 SGTAVINADSEFYDWWREILSVRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQI 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+PG V NAL AA + ++G+ V L + V GRF + I Sbjct: 276 DIQLPIPGLHNVSNALAAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLSDDLTLIDD 335 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 Y + S+ + + + R++ G G +G+ A A+ T Sbjct: 336 TYNASVQSVMAAIDTLAVMPGYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVFTV- 394 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458 E F K + +A++T ++ Sbjct: 395 ---GELSRHTAEAAAASGQHFANKDSLYQALQTLMQHQRP 431 >gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus castenholzii DSM 13941] Length = 485 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 84/490 (17%), Positives = 165/490 (33%), Gaps = 48/490 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +++ E+ ++ P + +E DSR + +FVA+ G + DGH F+ Sbjct: 3 RLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEFLA 62 Query: 62 Q----------AIAQGAE-------AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +V+ + + ++ VD+ + L+ Sbjct: 63 DAAARGARGALVRRSKVSSLTLERPYVVID-PVTGEGLERATPDTMLLIAVDDPQAALNR 121 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A+ G + ++ +TG+ GK+S + QRS + ++ ++ T Sbjct: 122 LAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRSFRTLKSPRSYNSEATLPIVLLKLT 181 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + G+ A L + RL G TN+G H++ + + Sbjct: 182 AD------HQVAVLEMGMYGPGEIAHLAALARPRL-------GIVTNVGPSHLERMGSIE 228 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 A A + LP++ AI+ DD + + + + + Sbjct: 229 AIQRA-KSELPQALPEDGFAILNIDDPRVRAMAEVTRARPFFYGLDPAADLWADAIE-SR 286 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + +G PL G V+ AL AA + +G++ ++ L Sbjct: 287 GLQGVSFRVHYQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRS-EGAQL 345 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPI 401 R V ++ I Y + S++ L + + GR I + G G ++ + Sbjct: 346 RLLAVPGINQTTLIDDTYNASPASMQAALNLLAEL-DGRRIAILGDMLELGSIEEEAHRM 404 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNK 458 +G A ++A I I R I E + A A +L Sbjct: 405 VGARAAEVAQILIAVGQRARW-----IANEAQQAGLPADQVYAVDDNDAAAHLARNLLAP 459 Query: 459 QDVLVVAGKG 468 D +++ KG Sbjct: 460 GDFVLI--KG 467 >gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia donghaensis MED134] Length = 424 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 116/347 (33%), Gaps = 33/347 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V +D+R ++ I+ A+ G +G+ F QA+ GA +V + D S Sbjct: 14 NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS------- 66 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VD+ L A+ I+ +TG++GK++ + + G Sbjct: 67 --VLVDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNL 124 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + L T + V + A+ G + + + G T Sbjct: 125 N--NHIGVPLTLLTMDAST-----------EIGIVEMGANHQGEIKMLCEIAQPNFGYIT 171 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ + K L+ L I D ++++ N + Sbjct: 172 NFGKAHLEGFGGFEGVIKGKSELYNYLRENNELVFINDQDEIQ---VRQSANIVSKTFGS 228 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 ++L+ + + + L G + N VA + + Sbjct: 229 SQSEYPVYLED-------GSGNLKITVGETTITSNLIGTYNFSNIAVAMAMGNHFDVPLT 281 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + +EK R + + ++ + Y S+ LKN++ Sbjct: 282 HIKNGIEKYVPSNNRSQIIDKDTYKIILDA-YNANPTSMAAALKNLQ 327 >gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 476 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 81/463 (17%), Positives = 160/463 (34%), Gaps = 34/463 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 E + ++ + I+ +++DSR ++ +++ I+G + DGH FI A A Sbjct: 15 FEPWSVEAVAAITQGKVVHPGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACAN 74 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A++ S + + + I+ V +T + + A+ ++ ++AVTG++GK Sbjct: 75 GAAAVLCDSD---HLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGK 131 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + + G + TP + + G+ H Sbjct: 132 TTTKDLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTP------AHEAAVVEMGMNHPG 185 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 A S G ++ G TN+G H++ +++ A + K+ A+I Sbjct: 186 EIARSIG-------EVRPHIGVITNIGSAHLENLGSKENTLKA-KMEIFGTMEKDDIALI 237 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y + ++ R + + + + E F F Sbjct: 238 NGDDPYLRRIVARDYRVVRVGIREPDADLKAEAIREDLSG------LYFEADGVPFHFKW 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG VYN L+A + +D A + L+ R + + Y Sbjct: 292 PGIHNVYNCLIAIWIGRYYHLDDAAIQAGLDAFVPSGNRMQMAEVGGL-RFVNDAYNANP 350 Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S+ + + + GR I V G G+ + +G+ A D+ I E Sbjct: 351 ESMRAAMDTVCAVAEGRKIAVLGDMLEIGENAEAWHRAVGEYAGTHMDVLI-----GVGE 405 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVV 464 E + P I E+ D +++ Sbjct: 406 WAETLCEGARGAAPNHPAVAAATVDAAAQILGEIAQTGDTVLI 448 >gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA2] gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA3] gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA4] gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA2] gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL103PA1] Length = 485 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +AVTG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315 + +V A T++ + + P+ A Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ + I Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431 >gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 252 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 17/196 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++V ++ I + G + + R T + + + Sbjct: 117 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 176 Query: 177 LSSQGVTHVSVEASSH 192 + + Sbjct: 177 CRIIERFTWNSFRGNC 192 >gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL060PA1] Length = 485 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 133/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +AVTG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315 + +V A T++ + + P+ A Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA A+ D + R + + Y +S+ Sbjct: 304 TAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ + I Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431 >gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase (UDP-MurNAc-pentapeptide synthetase; D-alanyl-D-alanine-adding enzyme) [Neisseria meningitidis WUE 2594] Length = 452 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA2] Length = 485 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 135/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + I+A+TG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315 + +V A T++ + + P+ + Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ E I Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431 >gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 139/449 (30%), Gaps = 41/449 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +T L A + E +LA+TG+SGK++V I QR G + Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ L + + + G + TN Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H+ Q AK LF L + D + Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + T++++ GE V NAL AA L A G+ A Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390 + L R + + I Y +S+ L + + R +V V G Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGN 444 G++ +G L D + E ++ A H + Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVAAARHRGMAAARTAACAD 452 Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468 + E + M++ D+++ KG Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479 >gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis M01-240013] Length = 479 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 42 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 89 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 90 AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 149 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 150 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 199 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 200 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 259 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 260 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 317 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 318 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 377 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 378 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 424 >gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] gi|46914748|emb|CAG21525.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] Length = 468 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 144/422 (34%), Gaps = 36/422 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I +L + L + + + VS+D+R + A +F+A+ G+ D H F A+ Sbjct: 1 MIEVQLAQLADVLDA-ELIGSDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMD 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121 G A++VS ++ P LVV +T + L L + + H +A+T Sbjct: 60 NGVAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALT 110 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++V V +I + G G + TP Sbjct: 111 GSCGKTTVKEMVAEILSQKGNVLATAGNFNNDIGVPLTLLRLTPE-------------HE 157 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + A+ + + +K NL H++ + AK +FE L Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPL 217 Query: 242 S-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISV 295 + AII D + + S+ + + T+ Sbjct: 218 NGSGLSTAIINLDSNDVAMWLPFLAQHAVKTFSLTDISADFSATDIFINSEGRACFTMCT 277 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D L G V NAL AA L +A+G V LE++ V GR + Sbjct: 278 PEGSTDITLTLAGTHNVSNALAAAALAMAVGATLEQVKAGLEQVVNVKGRVDVSHPREGL 337 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADI 412 I Y + S++ + + + T R V+ G+ + + A D Sbjct: 338 RLIDDTYNASVASVKAAIDLLASFTGQRWFVLGDMAELGEDSASLHREVAEYAMTKGLDK 397 Query: 413 AI 414 Sbjct: 398 VF 399 >gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 46P47B1] Length = 494 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E + +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 23 HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I + Sbjct: 78 ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133 Query: 140 SGLSSFQIGPTST 152 + G + Sbjct: 134 IAPTLITRGNLNN 146 >gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis ATCC 13091] Length = 452 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 132/401 (32%), Gaps = 34/401 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ + +DSR I+AG +F A+ G + D H F+ + R Sbjct: 22 KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 69 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + L VD+T L + A + +TG+ GK++V + + +R Sbjct: 70 EDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGD 129 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + + ++ P+ L + + + G K Sbjct: 130 NAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 179 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A N R H+ + L + A+I +DA N Sbjct: 180 PDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNL 239 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + G +H + + + + + + P+PG V+NA AA L + Sbjct: 240 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ V E L+ + GR I Y +S++ + + + + R Sbjct: 298 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 357 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 I V G G+ + + +M A + A DN Sbjct: 358 -IFVMGDMGELGEDEAAVMHAEVGAYARDQGIEAAYFVGDN 397 >gi|291336143|gb|ADD95723.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C161] Length = 833 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 108/312 (34%), Gaps = 61/312 (19%) Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGK 298 ++ DD ++ E++ ++ ++V + V +S Sbjct: 488 HQRVVVNLDDDFASEIISNCKVPVVTYARRREHRDIADVYCERVDLSLFETAVLVSTPVG 547 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + + L G+ V N L + +A I + + L + + GR E V + Sbjct: 548 ETEIVTALVGDANVSNVLASIASGLATEIPLENIAQGLGRANPAGGRMELV-DEGQKFCA 606 Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR-----------DQGKRPIMGKIA 406 VD A T + +++ R I R+IVV G G ++ R +G+ Sbjct: 607 LVDSAKTPEDVMNAIQSARAIPQCRRVIVVVGADGTNNDINATIDNGTEKAMRRKLGETV 666 Query: 407 LDLADIAIVTDDNPRSED--------------------------PEKIRAEI-------- 432 AD+ VT +P++ED P+ I A+I Sbjct: 667 DKYADVVFVTTQSPKNEDAYDLLEDVVDGFRSRVYDLPEVKERLPDGIIADIPFMKDMYL 726 Query: 433 -----------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 + + +R A+R AI M + D +++ GKG + + G+K Sbjct: 727 IHPNAQSEAVELQNLVRRYVIVDRFFAVRAAIAMAEENDCVLILGKGDQDFFEIE-GQKY 785 Query: 482 MSVDCDIIREIL 493 D R+ L Sbjct: 786 WFDDRMESRDAL 797 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 14/154 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK-----EDGH 57 L+D +++ + + + + +I+ + SD+R+ G +FV + + DGH Sbjct: 77 LRDTFELANIDVVKWIDLEEEE--DVEISGIVSDARYAIPGDLFVCVDNSSDDQDPHDGH 134 Query: 58 LFIPQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 + AIA +GA A+V +D A + P+ VV +T+ L Y Sbjct: 135 DDVSDAIALRGAVAVVSER----EDGVAENANGAPVAVVKSTKGILGKIGKAFYEDPSGK 190 Query: 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ G GK + + ++ I + S + + G Sbjct: 191 LVIAGVLGHRGKDTTCNLIKSIFEASERTLKKNG 224 >gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Rhodococcus opacus B4] Length = 504 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 84/498 (16%), Positives = 151/498 (30%), Gaps = 65/498 (13%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 + E++ + + ++ V DSR + AG +F+A+ G + DGH A+ Sbjct: 4 MTLARIAEIVGG-ELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAASAV 62 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------------FAS 107 GA A++ + + + T K ++L A Sbjct: 63 EAGAVAVLAARPVGVPAVVVSPAPGT------GPSKAMALEHDTDGSGAAVLAALAKLAR 116 Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 L V G +G + S + + P + ++ Sbjct: 117 ASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHP------- 169 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 AL + G + + A G G N+G H+ ++ A Sbjct: 170 ---WTALRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIA 226 Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 A ++ AI+ ADD + R ++ V Sbjct: 227 AAKGELPESLPSADDGGVAILNADDPLVVAMAPRTSAR-VVLVGRSESAHVRATDIVLDE 285 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + T++ + GE QV NAL AA + + G D + L V GR Sbjct: 286 RARARFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGR 345 Query: 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRD 395 V G + D Y +S+ LK + ++ R V G G Sbjct: 346 RMDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPES 405 Query: 396 QGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRI 446 + +G+ A+ L + + IV P + G I + Sbjct: 406 VVEHDAIGRFAVRLDVSRLIIVGTGRP--------ARAMHQGAVMEGSWGEESILVPDIA 457 Query: 447 EAIRTAIEMLNKQDVLVV 464 A+ + L D+++V Sbjct: 458 GAVALLEKELAPGDLVLV 475 >gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria polysaccharea ATCC 43768] Length = 452 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKVGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] Length = 461 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 68/420 (16%), Positives = 141/420 (33%), Gaps = 50/420 (11%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE---------------DGHLFI 60 ++I Q E ++ + DSR I+ G +F+ I + DGH FI Sbjct: 15 KLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFI 74 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A ++++ P+++V +T+ L A K +AV Sbjct: 75 NSALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAV 125 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + R + + ++ + Sbjct: 126 TGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPAD-----TEIAVIEMG 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A S L+ + T +G HI++ +T+ +AKM + + L Sbjct: 181 MDHLGQLTALSKMLEPN--------IALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKD 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + +RA ++ G + + + +S + Sbjct: 233 GTFIY----DGDEILLKERADLFSGEKVTFGEKES----NNFWVSQIEDKKRLSFKVNQE 284 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G+F N A + + S + E + L + R + + + I Sbjct: 285 TYSVNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGETIISD 344 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415 Y + ++ ++ G+ I+V G GD++ + A D + Sbjct: 345 VYNSNPTAAIKAIEILKDFPTQGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVYL 404 >gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus sp. RS-1] gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseiflexus sp. RS-1] Length = 490 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 90/490 (18%), Positives = 164/490 (33%), Gaps = 48/490 (9%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L +++ E + P + +E DSR + +FVA+ G + DGH F+ Sbjct: 8 QLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGHEFLA 67 Query: 62 QAIAQGAEAIVV----------SSAYSLQDF------SATIRSNTPILVVDNTRKFLSLF 105 A A+GA +V Y++ D + ++ VD+ + L+ Sbjct: 68 DAAARGARGALVRRDKLSNLSLERPYAVIDPVTGEGLEQATPDSVLLIAVDDPQAALNRL 127 Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165 A+ GK+ ++ VTG+ GK+S + QR + S+ + L Sbjct: 128 AAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQR------SFRTLKSPRSYNSEASLPIV 181 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 A + G+ A L + RL G TN+G H++ + +A Sbjct: 182 LLKLTADHQVAVLEMGMYGPGEIAHLAALARPRL-------GIVTNVGPSHLERMGSIEA 234 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 AK L + L + D M A + Sbjct: 235 IQRAKSELPQALPDDGFAIL--NIDDLRVRAMAEVTRARPFFYGLDPAADLWADSIESRG 292 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + +G F PL G V+ AL AA + +G++ ++ L + Sbjct: 293 LQGISFRVHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAG---LRDESAQ 349 Query: 346 FEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPI 401 + +D + ++ + N+ GR I + G G ++ Sbjct: 350 LRLLAVPGVNQTTLIDDTYNASPASMLAALNLLAELEGRRIAILGDMLELGSVEEEAHRR 409 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNK 458 +G ++A I R I E + G+ + EA A+ L Sbjct: 410 VGARVAEVARFLITVGRRARW-----IADEALQAGMAPDQVWSVDDNDEAADLAMSCLAP 464 Query: 459 QDVLVVAGKG 468 D++++ KG Sbjct: 465 GDIVLI--KG 472 >gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria meningitidis alpha275] gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis NZ-05/33] Length = 452 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] Length = 461 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 68/420 (16%), Positives = 141/420 (33%), Gaps = 50/420 (11%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE---------------DGHLFI 60 ++I Q E ++ + DSR I+ G +F+ I + DGH FI Sbjct: 15 KLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFI 74 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A ++++ P+++V +T+ L A K +AV Sbjct: 75 NSALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAV 125 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + R + + ++ + Sbjct: 126 TGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPAD-----TEIAVIEMG 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + A S L+ + T +G HI++ +T+ +AKM + + L Sbjct: 181 MDHLGQLTALSKMLEPN--------ISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKD 232 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + D + +RA ++ G + + + +S + Sbjct: 233 GTFIY----DGDEILLKERADLFSGEKVTFGEKES----NNFWVSQIEDKKRLSFKVNQE 284 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G+F N A + + S + E + L + R + + + I Sbjct: 285 TYSVNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGETIISD 344 Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415 Y + ++ ++ G+ I+V G GD++ + A D + Sbjct: 345 VYNSNPTAAIKAIEILKDFPTRGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVYL 404 >gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL001PA1] Length = 485 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V D+R + G +F+A+ G + DGH F A GA A++V+ Q P Sbjct: 27 DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77 Query: 92 ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVVD+ + LS A + + +AVTG+SGK+S + QI + G + +G Sbjct: 78 HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P A + + G + Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ +++ A E L + A++ A D + R Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243 Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315 + +V A T++ + + P+ A Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303 Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 AA +A+ D + R + + Y +S+ Sbjct: 304 TAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L + V RD R L D+ + D+ R + E R Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409 Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451 G I G+ + I Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431 >gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 461 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 64/419 (15%), Positives = 128/419 (30%), Gaps = 48/419 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +G +FVA+ GN+ DGH F+ QA+++GA ++V S + Sbjct: 30 VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVE--ISKLEEIRPGLGGASC 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V + L+ AS ++ +TG+ GK++ + G G + Sbjct: 88 LAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVIL---SLLGRRFKVHGSPKS 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ + A + + SS G + T + Sbjct: 145 YNTLIGLS----------ATVMGMDRGCDNLVLEYGTSSFGEISKLVSYFPPDEMVITEV 194 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + Q AK+ + E + + Y D + + VG Sbjct: 195 APAHLERLRDVQGVLRAKLEILESQRGRF---LSYNADNDLLWGAVTGGGLTVQRMGVGV 251 Query: 273 QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + + ++ D +A +A+ Sbjct: 252 RRGDVRISDRRIVWGDDGPRLNFNLHHGDRQLEVSSGLWPLHGAYPLALSWVMALRFGVE 311 Query: 331 LVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIV 386 + + V GR + + G + Y S+ + + + G R Sbjct: 312 DLFPEVAYGFKPVKGRGRAIRSREGGWLMDESYNANPTSMFGAIDSTLELARGGSMRPQA 371 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 V G MG+ + + + ++G I G+R Sbjct: 372 VLGGML--------EMGEDSSLWHRRIV----------------DRLNGFQRVILVGDR 406 >gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis CI] gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus biovar anthracis str. CI] Length = 250 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 13/153 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ Sbjct: 8 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 61 KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 114 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 TG++GK++V ++ I + + G ++ Sbjct: 115 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ 147 >gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 139/449 (30%), Gaps = 41/449 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +T L A + E +LA+TG+SGK++V I QR G + Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ L + + + G + TN Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H+ Q AK LF L + D + Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + T++++ GE V NAL AA L A G+ A Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390 + L R + + I Y +S+ L + + R +V V G Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGI--PGFIEKGN 444 G++ +G L D + E ++ G+ + Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVEAARYRGMAAARTAACAD 452 Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468 + E + M++ D+++ KG Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479 >gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] Length = 502 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 74/484 (15%), Positives = 159/484 (32%), Gaps = 64/484 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ G DGH ++ AI +GA AI+VS + D + Sbjct: 23 NEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDKGANAIIVSKHIDIVDKNK------ 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ--------------- 135 I++VD+ + L A G +A+TG+ GK+S ++ Sbjct: 76 -IILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTKGALKTLLTETSDKSLHLLYN 134 Query: 136 --ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY---------------------LAK 172 + ++ A RLT P+ L Sbjct: 135 EANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVSYIKGLVFASRGNFNNHLGLLIN 194 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S + + G + + +K TN+ H+++ + + AK Sbjct: 195 LASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMITNVSEAHLEFFNSLEDIAEAKCE 254 Query: 233 LFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +FE + I + Y+K + + + + L + + + Sbjct: 255 IFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYNFGASYNTSAELTLYANLGKQVHL 314 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + K + P N + + +G + + HL + GR E + Sbjct: 315 KYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNLDIAANHLANISPTKGRGEMINI 374 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIAL 407 + Y + S++ L+ ++ + + + G + + + ++ I Sbjct: 375 QNCCVICDY-YNASPQSMKAALEYLKQVPAENKTAIIGDMLELGQNSEALHKELVPYILD 433 Query: 408 DLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + N + + P KI + + I T ++ +++++ Sbjct: 434 ADCSKVFLVGKNTKYIYNLLPFKIAKKYFKNVDELITHI-------TVTDLFKNNELILI 486 Query: 465 AGKG 468 KG Sbjct: 487 --KG 488 >gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 476 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS D+R +Q G +FVA+ + DGH F+ A+ +GA A +VS + S+ Sbjct: 25 TGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMALEKGAAAALVS------HRPDGVASDA 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+LVV + K L + I A+TG+ GK+S ++ + R G Sbjct: 78 PLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKTSTKEMLRTVLSRQGKCHAAEASY 137 Query: 151 STISSFAQDNRLTTPSP 167 + Sbjct: 138 NNHWGVPLTLARMPADA 154 >gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] Length = 451 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 91/447 (20%), Positives = 164/447 (36%), Gaps = 47/447 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 VS DSR G +FVA+ + DGH F+P A A+GA ++V+ Sbjct: 26 TGVSIDSRTTAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGAG---------- 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L+V++ + L+ + ++AVTG+ GKS+ +++I G + Sbjct: 75 PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHAAEASF 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + P+ LA+ + V + + G + G T Sbjct: 135 NNH----------IGVPLTLARLPAE---ADFAVVEIGMNHPGEIAPLSAITRPHVGVIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G H+ + +A + K L ++P + + + + +RA + V Sbjct: 182 AIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG--PFLSRLARRARDGVRVVSFG 239 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 L + + + VT ++ PG NA+ A A+G+D Sbjct: 240 AQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLDPV 299 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387 L+ + GR N G I + Y + NS+ L+ + ++ GR I V Sbjct: 300 QAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL-SLLPGRRIAV 358 Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIE 441 G GD + + +AD+ + R E PE+ R ++ Sbjct: 359 LGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRGA------WAVD 412 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A+R A+ + DV++V KG Sbjct: 413 AASLAPAVRAALAV---GDVVLV--KG 434 >gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis alpha710] gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis OX99.30304] Length = 452 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 15 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L + A + +TG+ GK++V + + Sbjct: 63 AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 173 VLTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397 >gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18] Length = 479 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + ++ + +DSR I+AG +F A+ G + D H F+ + Sbjct: 42 LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 89 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 R + L VD+T L A + +TG+ GK++V + + Sbjct: 90 AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 149 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +R + + ++ P+ L + + + G Sbjct: 150 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 199 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 K A N R H+ + L + A+I +DA Sbjct: 200 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 259 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N R + G +H + + + + + + P+PG V+NA Sbjct: 260 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 317 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L +A G+ V E L+ + GR I Y +S++ + + Sbjct: 318 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 377 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 + + R I V G G+ + + M A + A DN Sbjct: 378 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 424 >gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae] gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] Length = 428 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 61/382 (15%), Positives = 134/382 (35%), Gaps = 32/382 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S D+R I+ G +F AI G D + F +A+ GA +V+ + D Sbjct: 15 SLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDDRT------- 67 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V+N+ + L + I+A+TG++GK++ + + + + IG + Sbjct: 68 -ILVNNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLN 126 Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 T + I + + + + + +G T Sbjct: 127 NHIGVPLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGY--------------IT 172 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G+ H++ Q K +++ LL + +D ++ + G + + Sbjct: 173 NFGKAHLEGFGGVQGVIEGKSEMYQYLLKNNKTVFVNLEDP-----IQIEKSTGIKNFTF 227 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + + + +E +DF L G + N A + ++ A Sbjct: 228 GVNKES---ADLKIKNIQANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDA 284 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 L+ E +E R + + I Y +S+ + + N + + I++ G Sbjct: 285 LIKEAIENYIPANNRSQLLKKG-SNEIILDAYNANPSSMAVAITNFLQLENQNKIMILGD 343 Query: 391 GGDRDQGKRPIMGKIALDLADI 412 + I L++ Sbjct: 344 MFELGNESHEEHKAIVDSLSNQ 365 >gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria meningitidis CU385] gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis H44/76] Length = 439 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 71/403 (17%), Positives = 130/403 (32%), Gaps = 35/403 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ + +DSR I+AG +F A+ G + D H F+ + R Sbjct: 6 KPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVED------------VLAAGAAAVVVSR 53 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + L VD+T L A + +TG+ GK++V + + +R Sbjct: 54 EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++ P+ L + + + G K Sbjct: 114 DAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A N R H+ + L + A+I +DA N Sbjct: 164 PNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNL 223 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + G +H + + + + + + P+PG V+NA AA L + Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 281 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ V E L+ + GR I Y +S++ + + + + R Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 341 Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 I V+ G G+ + + M A + A DN Sbjct: 342 IFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 384 >gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] Length = 457 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 76/485 (15%), Positives = 158/485 (32%), Gaps = 63/485 (12%) Query: 1 MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL E+ + + + + + DSR I AG +FV + G + DGH Sbjct: 1 MKL------TIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHD 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 FI A GA + + N P ++VD+ A+ K ++ Sbjct: 54 FIETAFENGAVVTLSEKKVA----------NQPYILVDDVLTAFQTLAAYYLEKTAVDVF 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG++GK++ + + + + G +N + P Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G + +E L L + + AK ++ Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + ++ D +++ +V+ G + L+ + K +T Sbjct: 209 MRPGSLLLAPAD----SIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + P+ G++ NA++A+ + + G+ + + + L + R E+ + + Sbjct: 262 EQTLDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLDLTRNRTEWKKAANGADIL 321 Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411 Y ++++IL+ I G+ I V GD+ M ++ D+ D Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I ED ++ ++ ++ L D ++ Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVYYFKKTADEDQFEGLVKQVKASLGTNDQIL 436 Query: 464 VAGKG 468 + KG Sbjct: 437 L--KG 439 >gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Flavobacteriaceae bacterium 3519-10] Length = 427 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 134/402 (33%), Gaps = 43/402 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 + DSR ++ IF A G+ + A +GA A++V Sbjct: 18 NATIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPARD------- 70 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I V +T FL A+ + ++A+TG++GK++ + + + + G + Sbjct: 71 IFYVPSTLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLN 130 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK----LIAG 207 P+ L S H Q ++ + G Sbjct: 131 NH----------IGVPLTLLSVRS-------HHNMAVIEMGANHQKEIEMLCEIAKPTYG 173 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G+ H++ + K ++ L ++ +DA + V Sbjct: 174 YITNFGKAHLEGFGGFEGVIKGKSEMYSYLRANSQTILVNENDA----IQVENTAGYSPV 229 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G ++V + + + D L G + N AA L + GI Sbjct: 230 ITFGKPDSDYLFEEVSNQNF-----VGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGI 284 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386 + +E R + + G + +D Y +S+E LKN + I+ Sbjct: 285 SFREIKTAIENYVPTNMRSQIL--EKNGKTLVLDTYNANPSSMEESLKNFNRFEGSKTII 342 Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDP 425 + G+ + + + +A LA D + +N R +P Sbjct: 343 IGDMLELGNESEAEHRRILDLAGSLAFDAVVTVGENFRRINP 384 >gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] Length = 885 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 137/385 (35%), Gaps = 28/385 (7%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GK++V + I + +G G T+T + + + A A + L Sbjct: 482 IAITGTNGKTTVTRMIGHIWRTAGYCV---GMTTTDGIYIDGHCIQKGDTTGPASARAVL 538 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236 + V +E + G+ + L + G TN+ DH+ + A L E Sbjct: 539 TDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKSLVVE 598 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--- 293 + A++ ADD Y + R + + + +I Sbjct: 599 TVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDSILYA 658 Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 D + NALVAA C + + + + L PGR Sbjct: 659 ACGSLASPICAVGDIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLATFDQNPGR 718 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + R+ +DY H + ++ +R + + R++ V GDR +G+I Sbjct: 719 LNLLTLG--DIRVCIDYGHNPAGYQALINTVRRLGATRLVGVIAAPGDRRDDVIVNVGRI 776 Query: 406 ALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLN 457 A D + +D + R P ++ + G+ +R EA+ A+ Sbjct: 777 AGRGFDYIYIKEDADRRGRAPGEVAQLLRRGVLEAQFPEDRIVTILAETEAVAKALADAR 836 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKM 482 D++VV +E V G ++ Sbjct: 837 PGDLVVVF---YEKYEKVLAGIQEF 858 >gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 140/449 (31%), Gaps = 41/449 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +T L A + E +LA+TG+SGK++V I QR G + Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ L + + + G + TN Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H+ Q AK LF L + D + Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + T++++ GE V NAL AA L A G+ A Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390 + L R + + + I Y +S+ L + + R +V V G Sbjct: 337 IAAGLAAYRPFAKRMQLLPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396 Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGN 444 G++ +G L D + E ++ A H + Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVAAARHRGMAAARTAACAD 452 Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468 + E + M++ D+++ KG Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479 >gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] Length = 464 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 87/420 (20%), Positives = 145/420 (34%), Gaps = 35/420 (8%) Query: 7 IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 + F EL + + ++ DSR +Q G IF+A+ G + DGH F+ QA A Sbjct: 8 LLWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFA 66 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTS 124 GA V L+V + +K L A VTG+ Sbjct: 67 SGAVLAVTRRPIE----------GGACLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSV 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK+SV V Q Q++G + I + P+ LA+ + Sbjct: 117 GKTSVTQMVMQGLQQAGRAHSAIKSFNNH----------IGVPLTLARMPADTERAVFEI 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 A + + A T +G H + +A A + L A Sbjct: 167 GMNHADEI---TPLSEFVAPHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLA 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I+ AD+ + + +A +G V + G G L + ++ V G+D F Sbjct: 224 ILNADNRWFDHLSTKARGSGALVAAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFS 283 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360 G Q NAL A + A+ +D L LE + GR + +GG + + Sbjct: 284 LSHTGRHQAVNALAALLMLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDE 343 Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415 Y S+ L ++ + GR + V G + + + + + D + Sbjct: 344 SYNANPVSMTATLASLGQRETAGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYL 403 >gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 300 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 13/153 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+I+ ++ + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 10 MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 63 KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 TG++GK++V + I + G ++ Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ 149 >gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bergensis DSM 17361] Length = 458 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 63/383 (16%), Positives = 128/383 (33%), Gaps = 26/383 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ IF+A+ G DG+ F A+ +G V+ ++ I Sbjct: 34 VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEK------EYDDEADDRI 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + ++ +TGT+GK++ + + G + Sbjct: 88 ILVDDCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNN 147 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + L + + V + AS G + +D ++ G TN+ Sbjct: 148 DVGVPK-------------TLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNV 194 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + AK L++ L +P + + + ++ + Sbjct: 195 GRAHLQGFGSFEGVMQAKGELYDYLKACHAPVFLNTSNEHLVDMAHQRRLERIISYGQDD 254 Query: 273 QGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + L G + + N L A + + G+ Sbjct: 255 GAQVWGEVMSCDPFLKLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVGLHFGV 314 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IV 386 + + LE R +FV SR I Y S+ + N ++ + + Sbjct: 315 SEEQIRQALESYTPSNNRSQFV-ETSRNRLIIDAYNANPTSMAAAIDNFERMSMTQPRMA 373 Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409 + G + + KIA L Sbjct: 374 ILGDMRELGEVSEEEHQKIADSL 396 >gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 155/485 (31%), Gaps = 45/485 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D+ E I +I +DSR + G +FVA+ G DGH F+ Sbjct: 3 DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58 Query: 64 IAQGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 +G + +VS + +A +L V + + L A + Sbjct: 59 ARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118 Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 ++ +TG++GK++ +Q+ G + + + LT Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 S + + AS G D L I + + + + A Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288 + E L AI+ ADD + + R +G + + + + + + Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347 + L G V NAL AA + G+ A + L V R Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403 V I Y +S+ L I + R +V+ G+ +G Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + A +L ++T P ++ E + + + + A R E++ D+++ Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460 Query: 464 VAGKG 468 V KG Sbjct: 461 V--KG 463 >gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 483 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 155/485 (31%), Gaps = 45/485 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D+ E I +I +DSR + G +FVA+ G DGH F+ Sbjct: 3 DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58 Query: 64 IAQGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 +G + +VS + +A +L V + + L A + Sbjct: 59 ARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118 Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 ++ +TG++GK++ +Q+ G + + + LT Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 S + + AS G D L I + + + + A Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288 + E L AI+ ADD + + R +G + + + + + + Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347 + L G V NA+ AA + G+ A + L V R Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403 V I Y +S+ L I + R +V+ G+ +G Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + A +L ++T P ++ E + + + + A R E++ D+++ Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460 Query: 464 VAGKG 468 V KG Sbjct: 461 V--KG 463 >gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pullorum MIT 98-5489] gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pullorum MIT 98-5489] Length = 230 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 17/246 (6%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH + Q+R++G++ TN+ DH+DYH+T + Y K S Sbjct: 1 MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATK----------NSFFAT 50 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D+ + K A + ++ G + K ++ I+ ++ L Sbjct: 51 PKDEKLINKDEKNAQYSLQNTMTYGIESNATFHIKAYSLKGGITAQIAYGKEEAMLNAYL 110 Query: 307 PGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+ +YNAL A + I ++ + LE V GR + V + I VD+AHT Sbjct: 111 FGKHNLYNALAAIGAVKILTKSPLQMIADKLENFGGVLGRMQVV---NEKPLIIVDFAHT 167 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + +E + ++ +I+V+FG GGDRD+ KRP MG A A +T DNPRSE+P Sbjct: 168 QDGMEQVFQS---FLHQKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRSENP 224 Query: 426 EKIRAE 431 + I E Sbjct: 225 KMIMQE 230 >gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] Length = 434 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 78/450 (17%), Positives = 149/450 (33%), Gaps = 51/450 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + V++DSR +FV IVG + DGH +I A+ +GA D Sbjct: 20 ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPD----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N ++ V +T + L A+R + ++A+TG++GK+S V + + + Sbjct: 75 --NLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKT 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KL 204 G ++ P+ + + +E +G Q K Sbjct: 133 AGNFNSD----------VGLPLTVLRMPRDTE-----VAVLEMGMNGFGQIETLSKLAKP 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H + + AK+ + L + DA + + + G Sbjct: 178 DVAFVTNIGESHGEQVGGRTGIAKAKLEIKAGLKADGRLIV----DADEPLLSGQGYRVG 233 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + G Q+ NA A +A Sbjct: 234 YDETADGKIEVIETTFDASIFKYNGD----------LYELKVLGAHQIRNAAYAIACGLA 283 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGR 383 G+D A++ L+++ + R E I Y + S+ ++ I+++ + Sbjct: 284 FGLDHAMIQRGLDRIKLTSMRMEKQMFGEA-HLINDAYNASPTSMIAAIETIKSLEGFSK 342 Query: 384 IIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 ++V G D + G + + D +V + + I I Sbjct: 343 RVLVLGDMYELGADEQMQHEQVGGAVTSPVTDCILV------GDKAKWIADGIQDSRVNV 396 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 EA V+++ A +G Sbjct: 397 KMVPTVEEAKALLHHYQRPDTVVLLKASRG 426 >gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 487 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 95/485 (19%), Positives = 157/485 (32%), Gaps = 53/485 (10%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF------ 59 L D E + + E V DSR + G +FVA+ G + DGH F Sbjct: 4 LSLADIAEAVGG-RLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAARAVA 62 Query: 60 -----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 + A A A++V + + +T L + Sbjct: 63 DGAAGVLAAREVDAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPR 122 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ VTG+SGK+S + Q+ + G + G + Sbjct: 123 LTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRADED-------- 174 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + A G + G+ N+G H+ +Q+A AK L Sbjct: 175 -----TRHLVLELSARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELV 229 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTI 293 E LP + A++ ADD + R L G + + + + T+ Sbjct: 230 ES-LPADGVAVLNADDPLVAAMASRTRARVV--LVGESPGAHVRAEDIVLDEQARPSFTL 286 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTN 352 PL GE V NAL AA + + +G V + L + V R E T Sbjct: 287 VAPQGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETA 346 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGK---RPIMGKIA 406 + Y S+ LK + ++T GR V G G+ + +G++A Sbjct: 347 DGVTVVNDAYNANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLA 406 Query: 407 LDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNK 458 + L D +V D A + HG + + A+ L Sbjct: 407 VRLNIDRLVVVGDQ---------AAGMHHGASLEGSWGEESVLVPDVDAAVALLRAELRP 457 Query: 459 QDVLV 463 DV++ Sbjct: 458 GDVVL 462 >gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] Length = 451 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 83/467 (17%), Positives = 146/467 (31%), Gaps = 52/467 (11%) Query: 8 YKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 +L+ L P+ E + + +DSR ++ G +FVA+ G+K DGH F+P Sbjct: 4 SATLSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVP-- 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A P+L V +T K + ++ V Sbjct: 62 ---------TAIAKGAIAAIVDFEYENPGFPVLRVKDTLKAYQQIGRWWRDRFNIPVIGV 112 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + +G + + P L + + Sbjct: 113 TGSVGKTTTKELI----------AAVLGTKGQVHKTYGNYNNEIGVPKTLLELGAE---N 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + G + G TN+G HI+ +++A A + Sbjct: 160 DYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAEA-KCELLAEMAA 218 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 +S AII D+ + + L + Sbjct: 219 DSVAIINHDNPLLMATAAKVWHGEVLTYGFSGGDIQGQLLDNDQMEVAG----------I 268 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PLPG N L A + +GID + + ++ + GR + + + Sbjct: 269 QLPLPLPGRHNATNFLAALAVAKVLGIDWSNLK-AGVEVDMPTGRSQRFTLPNDVIILDE 327 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416 Y ++ L+ + R I V G G+R Q +G+ L D +V Sbjct: 328 TYNAAPEAMIASLQLLADTPGKRKIAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVL 387 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D ED E A GIP E + + D L+ Sbjct: 388 VD---GEDAEA-MALSAEGIPS-ECFATHAELVARLKTFVQTGDRLL 429 >gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 553 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 152/493 (30%), Gaps = 62/493 (12%) Query: 2 KLQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +L++LI +L + S + + S+DSR I+ F A+ G DGH F+ Sbjct: 5 RLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFDGHAFV 64 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A+VVS + ++ P ++V++T L A+ + ++A+ Sbjct: 65 ERAVRAGAVALVVSD----LKCAELWQAELPTILVEDTLTALQKLAAYYRQNYLHTLVAI 120 Query: 121 TGTSGKSSV--------------ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 TG+ GK+S + + + G+ + S + + Sbjct: 121 TGSVGKTSTREMIAAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHAG 180 Query: 167 PIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + ++ +++ G H+ S + ++ A L D + Sbjct: 181 DLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAI-------MRAKAEIINGLKADGVLLLN 233 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 + + + + A+ + + + K Sbjct: 234 ADDPFLRQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFIIKLQQAPD 293 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + S P+PGE V NAL + L L V Sbjct: 294 LEKYGTMEAFVDSNRLPRI--KLPVPGEHHVINALFGLATAHLLHQPLTLAANGLRDFSV 351 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFG---CGGDRD 395 + R + + I Y S+ +K + + R I V G G+ Sbjct: 352 IGNR-QRIMNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGIAELGNMA 410 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455 +G+ AD+A + P A + G + +A A Sbjct: 411 DRLHYELGRYLAT-ADLAEIWLCGPY-------VAAVAQG------IADGDQAGDQADSQ 456 Query: 456 LNKQDVLVVAGKG 468 GKG Sbjct: 457 AG--------GKG 461 >gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] Length = 825 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 72/385 (18%), Positives = 138/385 (35%), Gaps = 26/385 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67 ++ + + I + +DSR + +F A+ + DGH +IP+ +G Sbjct: 4 TIEKVTTLIGARRYGDNDTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRG 63 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 + VV ++ A+ L V NT + L A R + I+ +TG++GK+ Sbjct: 64 VKNFVV---TNVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSNGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V ++ Q+ S + S + ++++ P ++L V Sbjct: 121 MVKEWLYQLLSPSMFVT--------RSPRSYNSQIGVPLSVWLM-----NEQTQVGVFEA 167 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S G D I+ TNLG H + + + K+ LF I Sbjct: 168 GISMPGEMLALRDIIQPTIAVLTNLGAAHQENFSSMEEKCREKLILF----HDAETVIYD 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD +V+ + L + ++K + + +T +G++ F P Sbjct: 224 GDDEVINKVIAEYPDYKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIP 283 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364 V NA+++A + +G+ + + + + +L V R E I Y Sbjct: 284 FIDNASVQNAIISAVVASKLGLSAEDIDKRMTQLEPVAMRLEVKVGQHGCTLINDSYNSD 343 Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388 S + + N R GR + Sbjct: 344 INSLDIALDFMNRRPDHRGRRHTLI 368 >gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 492 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 29/252 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ++ R+++ V+ DSR ++FV I G + DGH FI Sbjct: 4 MSLQEITT-----ACGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFI 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + QGA + + + P ++V + + L A ++ + Sbjct: 59 PQVMEQGALCTLSEHP---------LSDSFPYILVSSCAQALKDIAEHYRRALGIKVVGI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G+ GK+S + I ++ G + P+ + + Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFN----------NEIGLPLTVFQIQKE---H 156 Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + S + +RL + + TN+G+ H++ + AK +F P Sbjct: 157 EVAVLEMGISDFQ-EMNRLAKVAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRP 215 Query: 240 KESPAIIYADDA 251 S + DD Sbjct: 216 GASIILNGDDDK 227 >gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] Length = 451 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 28/340 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +VS+DSR +QAG +F+A+ G G F+ A QGA A +V+ ++ P Sbjct: 32 DVSTDSRRLQAGELFIALRGPNFRGEDFLAAAKGQGAVAAIVA--------EYQPDADLP 83 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +VV +T L A + A+TG++GK+S +Q++ Q G + +G + Sbjct: 84 QIVVADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLGNLN 143 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ L + + + A+ G + + TN Sbjct: 144 ----------NDIGVPLTLLRLRDEDR---YAVIEMGANHPGEIAALVALARPDVALITN 190 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + H+ T + AK ++ AI+ D + + + + Sbjct: 191 VAPAHLAGFGTLEGVIAAKSEIYAHSDG----AIVLNLDLPAAARWQDQFHDRPQYTFSL 246 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + A + + V+G D+ + L G + NAL A G+ A Sbjct: 247 NIDADVTAHDLAADG--SRFVLRVDGSDYPVAWQLVGRHNIMNALAACTAARLAGVSGAQ 304 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + L L + R + + Y S + Sbjct: 305 MQATLTGLALHQSRLAAIRVGAHTIYDDT-YNANPASFKA 343 >gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] Length = 243 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 17/196 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 1 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VDNT L A + ++ + Sbjct: 54 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDNTLFALQQLAQFYRREINVKVIGI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++V ++ I + G + + R T + + + Sbjct: 108 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 167 Query: 177 LSSQGVTHVSVEASSH 192 + + Sbjct: 168 CRIIERFTWNSFRGNC 183 >gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35243] Length = 480 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 37/476 (7%) Query: 12 PELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 + + ++ +I V++DSR I+AG +FVA+ G DGH F+ +G + Sbjct: 3 IDALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKV 62 Query: 71 IVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------- 116 VV + + +L VD+ + L A + Sbjct: 63 AVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKL 122 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ +Q+ G + G + P+ + +A S Sbjct: 123 VIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLTVLQADSD 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + AS G D L I + + + A+ Sbjct: 173 ---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIIT 228 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L AI+ ADD + + R S G KV + + + Sbjct: 229 SLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPA 288 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK + + AA +A + R V Sbjct: 289 GKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVD 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA-- 413 I Y +S++ L + S R++ V G + + G+I Sbjct: 349 LIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GRYCAKVGI 407 Query: 414 -IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 ++ P +++ E + + H + A R E++ +D++++ KG Sbjct: 408 PVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI--KG 460 >gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacteroides fluxus YIT 12057] Length = 433 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 65/373 (17%), Positives = 140/373 (37%), Gaps = 21/373 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR+ G +F+A+ G+ +G+ F +A+ G+ VV A + Sbjct: 16 VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTG------DAHY 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VDN + L A+ + I+ +TGT+GK++ + + +S + G + Sbjct: 70 IIVDNCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLN- 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + P+ L + + V + AS G + ++ + G TN+ Sbjct: 129 ---------NSIGVPLTLL---RLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G+ H++ + + K L++ L ++ + I+ + + + A+ Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDYLRRRKEGSTIFIHYD-NPYLREIAYGLNQITYGSEE 235 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + + + EGK L GE+ NAL A + G++ A + Sbjct: 236 ELYVSGRVTGNSPYLTFEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKI 295 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + L + R + + I Y S+ + N + + +++ G Sbjct: 296 DKALAEYTPQNNRSQL-KRTADNTLIIDAYNANPTSMMASISNFCKMEAAHKMLILGDMR 354 Query: 393 DRDQGKRPIMGKI 405 + + KI Sbjct: 355 ELGKDSAEEHQKI 367 >gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella oris F0302] Length = 438 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 65/426 (15%), Positives = 142/426 (33%), Gaps = 36/426 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR+ IF+A+ G DG+ F A+ +G ++ + N + Sbjct: 16 ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAE------ADNDRL 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ A + ++ +TGT+GK++ V + G + Sbjct: 70 ILVDDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFN- 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P L ++ + V + AS G + + + G TN+ Sbjct: 129 ---------NDVGVPKTLF---RLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNV 176 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ L + + +A ++ ++ Sbjct: 177 GRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMARQREMNRIITYGQSD 236 Query: 273 QGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 CA T + + ++ L G + + N A + + G+ Sbjct: 237 DANVRGEVIDCAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVT 296 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + LE R + ++ I Y +S+ ++N + + + + Sbjct: 297 PEQINHALESYVPANNRSQLE-VTAKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMAIL 355 Query: 389 GCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIHGI 436 G + D + ++ K+ D + T N R + ++++AEI Sbjct: 356 GDMRELGEVSDLEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAAHC 415 Query: 437 PGFIEK 442 P Sbjct: 416 PENCYI 421 >gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus AH820] Length = 246 Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 17/196 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+ L E+IN + + +I+ V DS++++ G +FV I+ K DGH ++ Sbjct: 4 MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A+ GA A + +Y PI+ VD+T L A + ++ + Sbjct: 57 KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TG++GK++V ++ I + + G + + R T + + + Sbjct: 111 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 170 Query: 177 LSSQGVTHVSVEASSH 192 + + Sbjct: 171 CRIIERFTWNSFRGNC 186 >gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Neisseria meningitidis G2136] Length = 436 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 131/401 (32%), Gaps = 34/401 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ + +DSR I+AG +F A+ G + D H F+ + R Sbjct: 6 KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + L VD+T L + A + +TG+ GK++V + + +R Sbjct: 54 EDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + + ++ P+ L + + + G K Sbjct: 114 NAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A N R H+ + L + A+I +DA N Sbjct: 164 PDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNL 223 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R + G +H + + + + + + P+PG V+NA AA L + Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAALSL 281 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ V E L+ + GR I Y +S++ + + + + R Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMPAPR 341 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419 I V G G+ + + M A + A DN Sbjct: 342 -IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381 >gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 442 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 65/371 (17%), Positives = 132/371 (35%), Gaps = 29/371 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 E+++D+R G IF A+ G +G+ F +A+ QG VV + + + N Sbjct: 15 KEITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVD------ESTPDMIGNE 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VDN L A+ I+ +TGT+GK++ + + + + +G Sbjct: 69 QYIIVDNVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNL 128 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + P + L + + + AS G + +D ++ T Sbjct: 129 NND--------IGVPKTL-----LRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALIT 175 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+GR H+ + K L++ + + A +A S ++++ + Sbjct: 176 NVGRAHLQGFGSFDGVKRTKAELYDFM-EAHNRANNIFINAESADLLEMFSTHCKSESYI 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY--------NALVAAGLC 322 Y A +S K+ + + N L A + Sbjct: 235 AYSPTNSVEASFVAEITANNPFVSFRWKETNNESDTWHNVGTHLIGAYNIANMLAAVSIG 294 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G++S + + LE R + + T I Y S++ L+N + Sbjct: 295 RTMGVESKDICKALENYIPSNNRSQLIKTA-HNTIIMDAYNANPTSMKAALENFIKMDVE 353 Query: 383 RIIVVFGCGGD 393 R +V+ G + Sbjct: 354 RKMVILGDMKE 364 >gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] Length = 457 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 9/131 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P+++ ++ + + +D+R +Q G +F+A+ G DGH F+ +A+ QGA A Sbjct: 23 LPQILAATAVHLDAGQGLTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGAIA 82 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 + + + P LVV +T ++AVTG+ GK++ Sbjct: 83 AITDQ---------VLPGDFPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTK 133 Query: 131 SFVQQICQRSG 141 + + G Sbjct: 134 ELIAAVLGLQG 144 >gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 82/485 (16%), Positives = 155/485 (31%), Gaps = 45/485 (9%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D+ E I +I +DSR + G +FVA+ G DGH F+ Sbjct: 3 DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN--- 116 +G + +VS + ++ +L V + + L A + Sbjct: 59 ARRGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118 Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 ++ +TG++GK++ +Q+ G + + + LT Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 S + + AS G D L I + + + + A Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288 + E L AI+ ADD + + R +G + + + + + + Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347 + L G V NA+ AA + G+ A + L V R Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403 V I Y +S+ L I + R +V+ G+ +G Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 + A +L ++T P ++ E + + + + A R E++ D+++ Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460 Query: 464 VAGKG 468 V KG Sbjct: 461 V--KG 463 >gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] Length = 473 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 148/473 (31%), Gaps = 41/473 (8%) Query: 6 LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + P + + V DSR + G +F A G + DGH + + Sbjct: 1 MITLSLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQR 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A P +VVD+ L A + +++A+TG Sbjct: 61 -----------AVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++GK+S + Q+ QR G + + G + T Sbjct: 110 SAGKTSTKDLIAQLLQRHGPTVWTPGSFNNEIGLPLTALSATAE-------------TEH 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G ++ + G N+G H+ +++A A E LP++ Sbjct: 157 LVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHLGEFGSREAIAQA-KGEMVEGLPEDG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + + R ++ + D Sbjct: 216 CAVLNADDPLVRAMASRTKARVLLFGEAPEADVRGEKVRMTPDGRPV-FELHTPTGCSDV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 L GE V NAL AA + +G+ + E L + R E + Sbjct: 275 TMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTVVNDA 334 Query: 362 YAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411 Y S+ L+ R GR V G GD + +G++A+ L Sbjct: 335 YNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + S E G + A+ L DV++V Sbjct: 395 KLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446 >gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. JDR-2] Length = 459 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 169/461 (36%), Gaps = 32/461 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I VS+D+R IQ G +FV +VG DGH ++ QA+ QGA A + + L A Sbjct: 12 VRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRELPQELA--- 68 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P+L V +T K L A+ + ++ +TG++GK++ + + + Sbjct: 69 -DAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKD----------MVAAVL 117 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + A + P+ + + + + S G + + + Sbjct: 118 GTAYKVHKTAGNLNNHIGLPLTVLQLDEE---TDAAVLEMGMSGFGEIELLTNIARPDVA 174 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H+ +++ AK+ + L + + E+ + G ++ Sbjct: 175 VITNIGDAHLLQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQL 234 Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCI 323 + G + + + +G+D + P+PG+ V NAL A + Sbjct: 235 QTFGLGESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGR 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382 GI + L L + R + V ++ + Y ++ + + ++ Sbjct: 295 RFGISEENIRNGLIGLELTGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGFR 354 Query: 383 RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE---IIHG 435 R +V G G ++ G I D AD I P SE Sbjct: 355 RKWIVLGDMRELGPEEESLHFETGAYITPDKADAVI--TFGPLSEHTSAGALSQFPAEAK 412 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 + ++ + E + QD+++V G +G IV Sbjct: 413 GTAIVHFDDKGKLGEWLREQVEPQDLVLVKGSRGVRMEQIV 453 >gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] Length = 481 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 72/472 (15%), Positives = 150/472 (31%), Gaps = 23/472 (4%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ +++ + + + V+ DSR G FVA G + DG+ F +A+ Sbjct: 1 MLSMSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYG-KHPENILAVT 121 A+ A ++ A A R +L D+ +FL A ++ VT Sbjct: 61 ARAATVVLTGPAPKG-CAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVT 119 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ 180 G+ GK++ + + G + + P + +A+ + + Sbjct: 120 GSVGKTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGE 179 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + + L + + GS ++ R + + +A+ + L Sbjct: 180 LSRLAACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALT 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + + I L + Sbjct: 240 SDNDFAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGW---SE 296 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG V + L+A +C +G+D L+ + ++ R E V R I Sbjct: 297 PCTLGMPGRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDD 356 Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIV 415 Y + +S+ L + ++ +GR + V G G+ + G I A D+ ++ Sbjct: 357 SYNASPSSVAAALDVLCSMACTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKPLDLLVL 416 Query: 416 --TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 T D A + G + A+ +L + D+++ Sbjct: 417 VGTHD-----AAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVL 463 >gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] Length = 481 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 11/152 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ VS D+R + G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 21 DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQALGKGAGAALVS------HIPEGV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ P+L+V++ L + ++AVTG+ GK+S ++ + R G + Sbjct: 74 AADAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKTSTKEMLRTVLARQGRTHAA 133 Query: 147 IGPTSTIS----SFAQDNRLTTPSPIYLAKAL 174 + + A+ R T + I + Sbjct: 134 EASYNNHWGVPLTLARMPRDTQFAVIEIGMNH 165 >gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris 28-1] gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris ATCC 35239] Length = 483 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 80/483 (16%), Positives = 152/483 (31%), Gaps = 41/483 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D+ E++ +I V++DSR I+AG +FVA+ G DGH F+ Sbjct: 3 DMTIDALREIVG----LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSV 58 Query: 64 IAQGAEAIVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 +G + VV + + +L VD+ + L A + Sbjct: 59 ARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARN 118 Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 ++ +TG++GK++ +Q+ G + G + P+ Sbjct: 119 GSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLT 168 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + +A S + + AS G D L I + + + A Sbjct: 169 VLQADSD---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAA 224 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 + L AI+ ADD + + R S G KV + + Sbjct: 225 EKSQIITSLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS 284 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + GK + + AA +A + R V Sbjct: 285 FTLHTPAGKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLV 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 I Y +S++ L + S R++ V G + + G+I Sbjct: 345 HLADGVDLIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GR 403 Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 ++ P +++ E + + H + A R E++ +D++++ Sbjct: 404 YCAKVGIPVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI- 461 Query: 466 GKG 468 KG Sbjct: 462 -KG 463 >gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] Length = 550 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 83/514 (16%), Positives = 152/514 (29%), Gaps = 79/514 (15%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ E VSSDSR I+AG +FVA+ G K DGH F+ + + +GA +V+ Sbjct: 40 LLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVVRKGAAGLVL 99 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASF 132 S + +T + L A R +LA+TG+SGK++V Sbjct: 100 ESPPEEPLPVPVVLV-------ADTLQALGDLAHYRRMQMKGLKVLAITGSSGKTTVKEM 152 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 I ++ + +N + P + L+ + + + + Sbjct: 153 TAAIMEQGRGRQRVLKTRG-----NLNNLIGLPLSL-----LAVDAHHQYAVLEMGMNRF 202 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + TN+ H+ AK LF + P + + DD Sbjct: 203 GEIARMAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNR-DDPR 261 Query: 253 SKEVMKRAHNAGCRV-------------------------------LSVGYQGKFIHLKK 281 + + G+ + + Sbjct: 262 VWRLAGKLPQRRITFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQ 321 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGI---------- 327 V A + ++ G+ P +Q + A G Sbjct: 322 VVASGPAPRTSVRKPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAA 381 Query: 328 --DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 A ++ LE R + I Y +S+ L+ + + R + Sbjct: 382 GVSPAEIVAGLEGYRPFAKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRNRKV 441 Query: 386 VVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA------EIIHG 435 V G +G+ L ++T E R ++ Sbjct: 442 VAILGDMLELGSHGPAAHRFIGEQVARLGFDYLLTVGEFAGETARAARRAGMDAGQVRAC 501 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 + +EA TA L D++++ A +G Sbjct: 502 LDKKEVGAWLLEA--TAKGRLKNDDLVLLKASRG 533 >gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM 22836] Length = 429 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 76/415 (18%), Positives = 151/415 (36%), Gaps = 39/415 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R+ IF A+ G +G+ + +AI QG VV + I Sbjct: 16 ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN--------I 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V ++ + L A + + I+A+TGT+GK++ + + + G + Sbjct: 68 ILVKDSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLN 127 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 P+ L + + V + AS G + + G TN Sbjct: 128 NH----------IGVPLTLLRIKKE---HEIVIVEMGASHVGEIRFLAEMALPNYGLITN 174 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 LG HI+ + + AK L+E + + I ++ R + G + G Sbjct: 175 LGHAHIEGFGSFENVVKAKGELYEFIRSTKDGKIFI----DYSNLLLREMSEGITSIYYG 230 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + KV +I + K + GE+ + NAL A + +G+ ++L Sbjct: 231 LEDDLFISGKVTSISPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASL 290 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + +E+ R + T + I Y S+ L+N + +++ G Sbjct: 291 ICKAIEEYVPTNNRSQLKKTE-KNMLIIDAYNANPTSMHAALENFDHMDVNHKVLILGDM 349 Query: 392 GDRDQGKRPIMGKIALDLADI----AIVTDDN--------PRSEDPEKIRAEIIH 434 + KIA ++D + DN PR ++ + ++ + Sbjct: 350 KELGPDTDMEHQKIADYISDHNFERVMFIGDNFSRVKTKYPRFKNLDDLKEYLKK 404 >gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mesorhizobium sp. BNC1] gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chelativorans sp. BNC1] Length = 477 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 87/421 (20%), Positives = 138/421 (32%), Gaps = 30/421 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + +L+ + P + +S DSR +Q G F AI G++ DGH F A+A Sbjct: 3 LLWTSDDLVAAVGGRPFGALPEGVTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLAMAA 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +V+S + A R P +VV + K L A+ + ++AVTG++GK Sbjct: 63 GAGLLVISE----EKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ ++ G + P+ LA+ + Sbjct: 119 TTTKEMLRHALSSVGTVHAAARSFNNHWGV----------PLSLARLPAGADFAIFEIGM 168 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +H + L + + L H + AII Sbjct: 169 ----NHAGEIEPLTQLVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAII 224 Query: 247 YADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD K + A AG R L + + VTI V G++ Sbjct: 225 NRDDQRFKLLADMAAEAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRI 284 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD-- 361 PG V NAL G G D + +L L GR + G +D Sbjct: 285 GAPGRHMVQNALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDES 344 Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDLADIAI 414 Y S++ L+ + GR I V G + + IA DI + Sbjct: 345 YNANPASMKAALQVLDSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILL 404 Query: 415 V 415 + Sbjct: 405 L 405 >gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14673] Length = 455 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 68/454 (14%), Positives = 151/454 (33%), Gaps = 41/454 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 E + +S DSR ++ +FV ++G K D H F+ QA GA A + S + + Sbjct: 20 GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ V++T+K L + + ++ +TG+ GK++ + + Sbjct: 80 TGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALSAGYRT 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 ++ +T + + + + S G + D + Sbjct: 135 FKTPANHNSQ----VGVPITISDISE---------ADEIGVLELGMSEPGEMEVIADIAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + TN+G HI+ +++ K+R+ + + + + ++ K Sbjct: 182 VDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKDGCET 241 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L + + + + + GE + NAL A + Sbjct: 242 SFYGLGAN---CSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVAD 298 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382 + A E L+ R + + I Y + +S++ ++ + ++ Sbjct: 299 HYHVPLADAAEALKTFDGFKNRQQIYEKGNI-TIIDDTYNASPDSMKAGIRVLASLTDRK 357 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 R I V G+ +G + ++T + EI G+ G Sbjct: 358 RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVIT--------YGALAKEIARGVEGK 409 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E+ + E ++L + D ++ KG Sbjct: 410 VKTTVFEEEQKEEMTEYLEKLLREGDAVLF--KG 441 >gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mobiluncus mulieris FB024-16] Length = 483 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 80/483 (16%), Positives = 152/483 (31%), Gaps = 41/483 (8%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 D+ E++ +I V++DSR I+AG +FVA+ G DGH F+ Sbjct: 3 DMTIDALREIVG----LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSV 58 Query: 64 IAQGAEAIVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 +G + VV + + +L VD+ + L A + Sbjct: 59 ARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARN 118 Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 ++ +TG++GK++ +Q+ G + G + P+ Sbjct: 119 GSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLT 168 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + +A S + + AS G D L I + + + A Sbjct: 169 VLQADSD---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAA 224 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 + L AI+ ADD + + R S G KV + + Sbjct: 225 EKSQIITSLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS 284 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + GK + + AA +A + R V Sbjct: 285 FTLHTPAGKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLV 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 I Y +S++ L + S R++ V G + + G+I Sbjct: 345 HLADAVDLIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GR 403 Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 ++ P +++ E + + H + A R E++ +D++++ Sbjct: 404 YCAKVGIPVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI- 461 Query: 466 GKG 468 KG Sbjct: 462 -KG 463 >gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate [Corynebacterium glutamicum] Length = 293 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 102/294 (34%), Gaps = 33/294 (11%) Query: 6 LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +I E+ + + + + ++ V DSR + G +F+A+ G + DGH F Sbjct: 1 MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60 Query: 63 AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112 AI +GA A++ + + I+ + + + LS A + Sbjct: 61 AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHEPDGHGAAVVEALSRLARHVVDI 120 Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 H N++A+TG++GK+S F+ + + G + G + R TT Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTVRCTT---- 176 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 + A G +H + + N+G H+ +++ Sbjct: 177 ----------DTKYLVAEMSARGIGHIKHLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQ 226 Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 AK + E A++ ADD + + R + Q K Sbjct: 227 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYW 280 >gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Clostridium symbiosum WAL-14163] Length = 455 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 69/454 (15%), Positives = 151/454 (33%), Gaps = 41/454 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 E + +S DSR ++ +FV ++G K D H F+ QA GA A + S + + Sbjct: 20 GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ V++T+K L + + ++ +TG+ GK++ + + Sbjct: 80 TGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALSAGYRT 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 ++ +T S + + + S G + D + Sbjct: 135 FKTPANHNSQ----VGVPITISDISD---------SDEIGVLELGMSEPGEMEVIADIAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + TN+G HI+ +++ K+R+ + + + + ++ K Sbjct: 182 VDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKDGCET 241 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L + + + + + GE + NAL A + Sbjct: 242 SFYGLGAN---CSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVAD 298 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382 + A E L+ R + + I Y + +S++ ++ + ++ Sbjct: 299 HYHVPLADAAEALKTFDGFKNRQQIYEKGNI-TIIDDTYNASPDSMKAGIRVLASLTDRK 357 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 R I V G+ +G + ++T + EI G+ G Sbjct: 358 RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVIT--------YGALAKEIARGVEGK 409 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E+ + E ++L + D ++ KG Sbjct: 410 VKTTVFEEEQKEEMTEYLEKLLREGDAVLF--KG 441 >gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 462 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 68/419 (16%), Positives = 138/419 (32%), Gaps = 46/419 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK+ E+ + P+ + + ++ DSR ++ G +FV + G + DGH Sbjct: 1 MKM------TLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRL-YG 111 FIP +A + + + P+ LVV + K + A Sbjct: 54 FIP------------VAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 K ++A+TG++GK++ I P + + + + P Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT-- 157 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 V + + G H L + + + + + Sbjct: 158 ---------EVLVLEMGMDRPG-QLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + L + I D+ +E K+ R + I + N + Sbjct: 208 MEITDGLKDDGTFIFNGDEPLLQERAKKITQE--RETFGLHPENTIFAHSISGHRNHTEF 265 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T+ D F P+ GE+ V NAL A + + ++ + L V R +++ Sbjct: 266 TVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWLIG 324 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + Y +++ ++ + T +GR I V G + + + +A L Sbjct: 325 DVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHASLAEAL 383 >gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] Length = 457 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 69/396 (17%), Positives = 138/396 (34%), Gaps = 34/396 (8%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + ++ + ++ +S DSR + +F+AI G DGH F+ + + +G Sbjct: 6 SEINNVLGDIKNLSEGKKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKG 65 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 +++V+ + + SN P VV++T + A K I+A+TG+ GK+ Sbjct: 66 VKSVVI-----KKGMQKLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKT 120 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + G + LT + + + Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFN----NEIGVGLTILAA-----------DIEDKVLVL 165 Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E GL Q + + TN+G HI +++ +A + L E I Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKENITHA-KCEISKFLNPEGVVI 224 Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 I A+D + ++ +K + + +N TI +E F+ Sbjct: 225 IPANDPFLEKTLKEFWKGRVIKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFE 284 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F N L A + +GID A + + GR + + + Sbjct: 285 ISFEGF--HNASNFLFAYAVAKELGIDFASS--NKFDFVSLDGRNKILKSVKTTIYDE-S 339 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 Y + S++ +KN+ + +FG + + Sbjct: 340 YNASPESVKACIKNLLEKPRNKF-FIFGSMQELGKE 374 >gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas gingivalis W83] Length = 420 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 63/374 (16%), Positives = 132/374 (35%), Gaps = 29/374 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR + IF A+ G DG+ F A+ +G VV ++D Sbjct: 2 VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 53 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ L A+ ++ +TGT+GK++ + + + + G + Sbjct: 54 LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNN 113 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 P+ L + + + + + A+ G + G TN+ Sbjct: 114 H----------IGVPLTLLRLKAEHR---IAIIEMGANKPGDIAELTRIARPNYGLITNI 160 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 GR H+ + + K L++ + + + DD ++ + G + +S G Sbjct: 161 GRAHLQGFGSLEGVRRTKGELYDFIRAEGGILFLNFDDDTLIDMSQ-----GLQSVSYGT 215 Query: 273 QGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++ A + + + L G++ + NAL A + Sbjct: 216 SADATVRGRIVANNTPYLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEA 275 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 ++ L R +++ T I Y S+ + L N ++ + + +V+ Sbjct: 276 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRVALDNFDSLHTDKPLVLILGD 335 Query: 392 GDR--DQGKRPIMG 403 + + KR M Sbjct: 336 MNELGAESKREHMA 349 >gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 447 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 87/471 (18%), Positives = 144/471 (30%), Gaps = 43/471 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I E+ + + DSR Q G +F+A G DGH + QA Sbjct: 1 MIPLSVGEIAAVVGGTVSGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHAYAEQAG 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122 GA A++ S P +V ++T+ L A + G+ + + VTG Sbjct: 61 QAGAAAVLGSRPTP-----------LPTVVAEDTQAALQALAVHVVGRLRDRLTVFGVTG 109 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + +G + G + T ++ Sbjct: 110 SQGKTSTKDLLAAVLSSAGQTIATFGSFNNELGVPLTMLRT-------------EATTRF 156 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + A G + N+G+ H+ +++A AK L + L Sbjct: 157 LALEMGARHLGDISELTGLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGEL-VQGLAPGG 215 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ ADD + L + T+ Sbjct: 216 TAVLNADDPRVAAMRSLTDRPVL-TFGRTEHADVRALGLALDRLGRPSFTLRTADASAPV 274 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 P G Q NA A + G+ L + R E S + Y Sbjct: 275 SLPHVGAHQALNASAAVAAGLVAGVPLDTAAAMLATASLSRWRMEPRDLASGAILLNDSY 334 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419 +S L + I R I V G GD + +G+ A AD +VT Sbjct: 335 NANPDSTRAALDALAAIEGRRHIAVLGEMLELGDDSEVWHRAVGEYAAARAD-VVVT--- 390 Query: 420 PRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468 K I G + + A+ L DV++V A +G Sbjct: 391 -----VGKAALRIAEGAGDRAVALADNGAAVHWLRNHLAADDVVLVKASRG 436 >gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC 25986] Length = 474 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 130/390 (33%), Gaps = 16/390 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ DSR ++ G IFVA G DG+ F +A+ GA A+V++ + S Sbjct: 22 ADQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLA 81 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 IL+ D+ +FL A + ++ +TG+ GK++ + + + Sbjct: 82 QDKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTTKDVLAAVLAKRYRVWA 141 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + + L+ P+ + ++ ++++ L G I Sbjct: 142 TKGNFNNLIGMPL-TVLSAPADTEVLVLEMGMNHFHEIERLSQSANPNLAIVSKIGTSHI 200 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + + ++ ++ +D ++ + Sbjct: 201 GILGS---------RENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDTFAQPAG 251 Query: 266 RVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + +V +G+ D + +PG V NA+ AA + Sbjct: 252 IDVMLAGVSDDDEVRARDVRVDDEGRPVFTLDFGQGETIDTMLAIPGVQSVPNAVKAAAV 311 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380 +G+ + L + R E S I Y ++ S+ L + ++ Sbjct: 312 AYRLGVTPEQIDAAFRGLTITGHRQEIKRAKSGARVIDDSYNASAESMAAGLDLLCSLSC 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 +G + + G G+ + P M ++ A Sbjct: 372 TGSRMAILGEMGEMG-DEAPRMHELVGAYA 400 >gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus australis ATCC 700641] Length = 456 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 148/446 (33%), Gaps = 49/446 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 DSR I G +FV + + DGH FI A GA A + P L+ Sbjct: 31 FDSRLIGKGDLFVPLKVAR-DGHDFIETAFENGAVATLSEKEVE----------GHPYLL 79 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 VD+ A + K ++LAVTG++GK++ + Q+ + + G Sbjct: 80 VDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLLSTTYKTYKTQGN----- 134 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +N + P +G + +E L L + Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHPKAAIVTLI 184 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 + AK +L ++ D ++ + G Sbjct: 185 GEAHLEFFKDRTEIAKGKLQIADGMPAGGLLLVPADPIVEDFLPNQQELV-------RFG 237 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + ++ K +T + P+ G++ NA++A+ + + G+ + Sbjct: 238 EGADIRITKLDERKDSLTFEANFLEEAIDLPVTGKYNATNAMIASYVALKEGVSEEAIRA 297 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391 + L + R E+ + + Y ++ +IL+ TI +GR + V Sbjct: 298 SFKGLELTKNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357 Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442 G++ M ++ D+ D I + ++ +++ E+ Sbjct: 358 KELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + ++ E L +QD +++ KG Sbjct: 416 DQFEDLVKQVKESLKEQDQILI--KG 439 >gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941] gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941] Length = 849 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 82/463 (17%), Positives = 156/463 (33%), Gaps = 32/463 (6%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69