RPSBLAST alignment for GI: 254781102 and conserved domain: TIGR01143

>gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417
 Score =  124 bits (313), Expect = 5e-29
 Identities = 98/359 (27%), Positives = 156/359 (43%), Gaps = 34/359 (9%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I+ G +F+A+ G + DGH F+ QA+A GA A++V       D         P ++V
Sbjct: 2   DSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREV-GPDNGL------PQILV 54

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           D+T + L   AS    K    ++ +TG+SGK++    +  I              +T  +
Sbjct: 55  DDTLEALQALASAKRAKFSGKVIGITGSSGKTTTKEMLAAILSHKY------KVFATPGN 108

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-E--ASSHGLDQHRLDGIKLIAGSFTNL 212
           F  +N +  P        L+ L + G    +V E  AS  G   +  +  K      TN+
Sbjct: 109 F--NNEIGLP--------LTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNI 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +    AK  + +  L +   A+I ADD    +  KR  N    +LS G+
Sbjct: 159 GPAHLEGFGSLEGIAEAKGEILQG-LKENGIAVINADDPAFAKFAKRLPN--KAILSFGF 215

Query: 273 QGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +G       +  +       T+   G +F+   PL G   V NAL AA L + +GI    
Sbjct: 216 EGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEE 275

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFG 389
           + E L +L +V GRFE    N   G   +D  + +N   M    +      G+ I+V G
Sbjct: 276 IAEGLAELKLVKGRFEIQTKN---GLTLIDDTYNANPDSMRAALDALARFPGKKILVLG 331