RPSBLAST alignment of GI: 254781102 and protein with PDBid: 1j6u

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469

 Score =  141 bits (356), Expect = 3e-34
 Identities = 69/451 (15%), Positives = 142/451 (31%), Gaps = 56/451 (12%)

Query: 57  HLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLY 110
            +F+P +       + ++ + A         +R + P +V     +        +     
Sbjct: 59  PIFVPHSADNWYDPDLVIKTPA---------VRDDNPEIVRARMERVPIENRLHYFRDTL 109

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +  +   AVTGT GK++  + V  + +                        T      +
Sbjct: 110 KREKKEEFAVTGTDGKTTTTAMVAHVLKHLR------------------KSPTVFLGGIM 151

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                    +G   V  E                     TN   DH++ +      + + 
Sbjct: 152 DSLEHGNYEKGNGPVVYELDESEEFFSEF---SPNYLIITNARGDHLENYGNSLTRYRSA 208

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              FE++       + +A+D  +  +                +G +    +  +   ++ 
Sbjct: 209 ---FEKISRNTDLVVTFAEDELTSHLGDVTFG--------VKKGTYTLEMRSASRAEQKA 257

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +      +  +    +PG   V NAL    L  ++G D A VLE LE+   V  RF    
Sbjct: 258 MVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAF 317

Query: 351 T-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALD 408
                   +  DYAHT + +  +L+  + +     I+V+F         +       AL 
Sbjct: 318 HDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQ 377

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  +VT+     E+       K+  + +  +        ++  +   I  +++  V +
Sbjct: 378 LADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVIS-VSENTVFL 436

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             G G           ++          +LG
Sbjct: 437 FVGAGDIIY-SSRRFVERYQSSKSSPSRVLG 466