RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781102|ref|YP_003065515.1|
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
(497 letters)
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Length = 498
Score = 351 bits (902), Expect = 2e-97
Identities = 165/480 (34%), Positives = 246/480 (51%), Gaps = 14/480 (2%)
Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D
Sbjct: 18 SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 77
Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
P++ + + LS A R Y + +N+ + VTGT+GK++ + Q Q G S
Sbjct: 78 MHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEIS 137
Query: 145 FQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
+G + + TT S + + L+ L QG T ++E SSHGL QHR+ +K
Sbjct: 138 AVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK 197
Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
A FTNL RDH+DYH + Y AK L+ AII ADD + + + +A
Sbjct: 198 FAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--EHHCGQAIINADDEVGRRWLAKLPDA 255
Query: 264 ----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
++ G+++ +V + + S D + L G F V N L+A
Sbjct: 256 VAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLAL 315
Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
+A+G A +L+ +L V GR E + VDYAHT ++LE L+ R
Sbjct: 316 ATLLALGYPLADLLKTAARLQPVCGRMEVFTAP-GKPTVVVDYAHTPDALEKALQAARLH 374
Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
+G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+
Sbjct: 375 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDA 434
Query: 440 IEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
R EA+ A+ + DV++VAGKGHE IV ++ D + +LG+I
Sbjct: 435 GHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIV-GNQRLDYSDRVTVARLLGVI 493
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis}
Length = 535
Score = 301 bits (771), Expect = 2e-82
Identities = 146/477 (30%), Positives = 219/477 (45%), Gaps = 17/477 (3%)
Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
+R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A +
Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEI---AG 115
Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
R+ P+LV R L A+ +YG E ++ +TGTSGK++ V+ + +G +
Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVA 175
Query: 145 FQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
I + + LTTP L L+ + +GV V +E SSH L R+DG +
Sbjct: 176 GLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTR 235
Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHN 262
G+FTNL RDH+D+H + YF AK LF+ + A++ DD + + RA +
Sbjct: 236 FAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAAD 295
Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
A + +Q I G LPG + V N LVA +
Sbjct: 296 AITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAIL 355
Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
+G+ + L ++ V + VDYAH +L +L +
Sbjct: 356 DTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF--LALVDYAHKPEALRSVLTTLA-HPDR 412
Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436
R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G
Sbjct: 413 RLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGD 472
Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
+E +R +AIR A+ DV+++AGKGHET G + D + L
Sbjct: 473 AQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRG-GGRVRPFDDRVELAAAL 528
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 209 bits (531), Expect = 2e-54
Identities = 87/446 (19%), Positives = 157/446 (35%), Gaps = 35/446 (7%)
Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
+ ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS +
Sbjct: 21 DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRP---------L 71
Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
+ P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + +
Sbjct: 72 DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYT 131
Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
G L + + A+ G + + A
Sbjct: 132 AGN-------------LNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEA 178
Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
NL H++ + AK +F LP+ AI+ AD+ +
Sbjct: 179 ALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGSRKVW 237
Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
S + + + T+ D L PLPG + NAL AA L +++G
Sbjct: 238 RFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVG 297
Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--I 384
+ L L VPGR + + Y S+ ++ + + R +
Sbjct: 298 ATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLV 357
Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
+ G + +G+ A D + + E
Sbjct: 358 VGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFA--------- 408
Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH 469
++ I ++ +Q V+ + KG
Sbjct: 409 DKTALITRLKLLIAEQQVITILVKGS 434
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Length = 524
Score = 160 bits (406), Expect = 6e-40
Identities = 61/445 (13%), Positives = 131/445 (29%), Gaps = 47/445 (10%)
Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLS---LFASRLYGKH 113
++ + + +VV +A ++ ++ +D ++ S + ++
Sbjct: 72 YLIAHLQPAPDLVVVGNA---------MKRGMDVIEYMLDTGLRYTSGPQFLSEQV--LQ 120
Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
+++AV GT GK + I +G+ G ++ ++ S
Sbjct: 121 SRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGT 180
Query: 172 KALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
+ +S + +EA S+ + + + NL DH D A
Sbjct: 181 EKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQ 240
Query: 228 NAKMRLFEELLPKESPAI----IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
+ + + I +D +K V ++ + +
Sbjct: 241 TQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENS 300
Query: 284 AIHNKQQVT---ISVEGKDFD------------FLFPLPGEFQVYNALVAAGLCIAIGID 328
N IS +G F + + G V NALVA IG+
Sbjct: 301 QAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360
Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387
L + R E +G ++ D+AH ++ L + R+ +
Sbjct: 361 VKTACAALSAFAGIKRRMELIGDV-NDILVFDDFAHHPTAITTTLDGAKKKLADRRLWAI 419
Query: 388 FGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---G 443
+ G + LAD + + +++ P +
Sbjct: 420 IEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLS 479
Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
+ + I+ D +V+ G
Sbjct: 480 SVDDIIKHICTHAKAGDAIVIMSNG 504
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Length = 437
Score = 143 bits (361), Expect = 1e-34
Identities = 48/406 (11%), Positives = 120/406 (29%), Gaps = 53/406 (13%)
Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL---------- 142
+ ++ + I V GT+GK + ++ I +GL
Sbjct: 36 ERVKQVAERL------DLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHL 89
Query: 143 --------------SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
S + + + + T AL + V +
Sbjct: 90 LRYTERVRIQGQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKL-DVVIL 148
Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
G + + + T++ DH D+ + +
Sbjct: 149 EVGLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDM 208
Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
+ + + R ++ + + ++ ++Q + +
Sbjct: 209 PQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQE--PVDQQINGWHWQCGERQLTGLPVP 266
Query: 309 EFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
+ NA A + + S + + +PGRF+ V + +D AH +
Sbjct: 267 NVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQ---PLLILDVAHNPH 323
Query: 368 SLEMILKNIRTITS-------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
+ ++ + + + G++ V G D+D + ++ + + + P
Sbjct: 324 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAG--TLACLSERVDEWYCAPLEGP 381
Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
R ++ ++ + + A R A++ + QDV++V G
Sbjct: 382 RGASAGQLAEHLVSA----RQFSDVETAWRQAMQDADTQDVVIVCG 423
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics,
TM0231, JCSG, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Length = 469
Score = 141 bits (356), Expect = 3e-34
Identities = 69/451 (15%), Positives = 142/451 (31%), Gaps = 56/451 (12%)
Query: 57 HLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLY 110
+F+P + + ++ + A +R + P +V + +
Sbjct: 59 PIFVPHSADNWYDPDLVIKTPA---------VRDDNPEIVRARMERVPIENRLHYFRDTL 109
Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
+ + AVTGT GK++ + V + + T +
Sbjct: 110 KREKKEEFAVTGTDGKTTTTAMVAHVLKHLR------------------KSPTVFLGGIM 151
Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
+G V E TN DH++ + + +
Sbjct: 152 DSLEHGNYEKGNGPVVYELDESEEFFSEF---SPNYLIITNARGDHLENYGNSLTRYRSA 208
Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
FE++ + +A+D + + +G + + + ++
Sbjct: 209 ---FEKISRNTDLVVTFAEDELTSHLGDVTFG--------VKKGTYTLEMRSASRAEQKA 257
Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
+ + + +PG V NAL L ++G D A VLE LE+ V RF
Sbjct: 258 MVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAF 317
Query: 351 T-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALD 408
+ DYAHT + + +L+ + + I+V+F + AL
Sbjct: 318 HDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQ 377
Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
LAD +VT+ E+ K+ + + + ++ + I +++ V +
Sbjct: 378 LADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVIS-VSENTVFL 436
Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
G G ++ +LG
Sbjct: 437 FVGAGDIIY-SSRRFVERYQSSKSSPSRVLG 466
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA
ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1
c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Length = 475
Score = 137 bits (346), Expect = 5e-33
Identities = 78/418 (18%), Positives = 140/418 (33%), Gaps = 48/418 (11%)
Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGT 123
+GA +VVSSA I+ + P LV + + +AV GT
Sbjct: 76 EGASVVVVSSA---------IKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGT 126
Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
GK++ + + I ++ L + + S ++ L
Sbjct: 127 HGKTTTTAMISMIYTQAKLDPTFVN-GGLVKSAGKNAHLGASR----------------- 168
Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
++ EA L + + TN+ DH+D ++ A F LP
Sbjct: 169 YLIAEADESDASFLHL---QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGL 225
Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFD 301
A++ ADD +M+ G +V++ G+ + + + Q I + +
Sbjct: 226 AVMCADDPV---LMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERIN 282
Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RI 358
L +PG+ NA A + GI + +LE L RF+ +G R R+
Sbjct: 283 VLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRL 342
Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
DY H + + +K R RI+++F L D I+ D
Sbjct: 343 VDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLD 402
Query: 418 DNPRSEDPEKI--RAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
E P + I I + + +++ D+++ G G
Sbjct: 403 VYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAG 460
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-
alanyl-D-alanine ligase, MURF protein...; HET: 1LG;
2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Length = 454
Score = 127 bits (318), Expect = 6e-30
Identities = 74/453 (16%), Positives = 155/453 (34%), Gaps = 45/453 (9%)
Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
+ + ++ + DSR I G +FV + G + DGH FI A GA +
Sbjct: 21 FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV------- 72
Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
SN P ++VD+ AS K ++ AVTG++GK++ + + +
Sbjct: 73 ---SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTY 129
Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIK 203
G + I L + ++ V H D H L + +
Sbjct: 130 KTQG--------------NYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175
Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
T +G H+ + + + KM++ + + S + AD +
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG-MASGSLLLAPADPIVEDYLPIDKKVV 234
Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
+ L+ + K +T + P+ G++ NA++A+ + +
Sbjct: 235 RFG--------QGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286
Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTIT 380
G+ + + L + R E+ + + Y ++++I I
Sbjct: 287 QEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANE 346
Query: 381 SGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS---EDPEKIRAEII 433
G+ I V G Q ++ ++ D+ DI I ++ + +
Sbjct: 347 GGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHV 406
Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
+ ++ + ++ E L D +++ G
Sbjct: 407 YYFKKTEDQDQFEDLVKQVKESLGAHDQILLKG 439
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 123 bits (309), Expect = 8e-29
Identities = 60/410 (14%), Positives = 119/410 (29%), Gaps = 60/410 (14%)
Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS-------- 144
L +P+ + VTGT+GK S A+ + + + SGL+
Sbjct: 23 RRILTLLHAL------GNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFI 76
Query: 145 ------FQIG-----------------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
I Q + T A A Y +
Sbjct: 77 MRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQ 136
Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
V +E D +I + L +D+ + A + ++ +
Sbjct: 137 VDVAVIEVGIG----GDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRG 192
Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
P + + V+ + F K ++ +G+ D
Sbjct: 193 IPVVTGNLVPDAAAVVAAKVATTGSQWLR-FDRDFSVPKAKLHGWGQRFTYEDQDGRISD 251
Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGG 356
PL G++Q N +A + + P R E +
Sbjct: 252 LEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDT---P 308
Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
I +D AH + + ++ ++ + S I V+ G D+D + ++ + + +V
Sbjct: 309 LIVIDGAHNPDGINGLITALKQLFSQPITVIAGILADKD--YAAMADRLTAAFSTVYLVP 366
Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
PE + G K + EA+ ++ + +V+ G
Sbjct: 367 VPGTPRALPEAGYEALHEGRL----KDSWQEALAASLNDV-PDQPIVITG 411
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166,
structural genomics, JCSG, PSI, protein structure
initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2
c.72.2.2
Length = 442
Score = 122 bits (307), Expect = 2e-28
Identities = 61/389 (15%), Positives = 123/389 (31%), Gaps = 51/389 (13%)
Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLS-------------------------- 143
+P + + GT+GK SVA+ V I G
Sbjct: 47 NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEE 106
Query: 144 ----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
++ ++ + + A A Y + + V +E RL
Sbjct: 107 DVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG----GRL 162
Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
D ++ + + D+ +T ++ + P + + +VM+
Sbjct: 163 DATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMED 222
Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
+ V K +K ++ + E D + + G Q+ NA VA
Sbjct: 223 VARKKSSRMYVID--KDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVAL 280
Query: 320 GLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
A G+ + K GRFE + N + +D AH + E ++++++
Sbjct: 281 KTLEATGLPLSEKAIREGLKNAKNLGRFEILEKNGK--MYILDGAHNPHGAESLVRSLKL 338
Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
+ +V G D++ + I+ K + + +PR +D +
Sbjct: 339 YFNGEPLSLVIGILDDKN--REDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFFK 396
Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
+ +EAI + + VV G
Sbjct: 397 NVEVIEDPLEAIEST------ERATVVTG 419
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 115 bits (288), Expect = 2e-26
Identities = 69/439 (15%), Positives = 144/439 (32%), Gaps = 54/439 (12%)
Query: 41 QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-------FSATIRSNTPIL 93
+ G I G D + + +G + + S L D + I N P++
Sbjct: 30 KLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMV 89
Query: 94 V--VDNTRKFLS--LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
++ L+ A + ++ +TG++GK + ++
Sbjct: 90 KKALEKQIPVLTEVELAYLVSESQ---LIGITGSNGKXXXXXMIAEVLN----------- 135
Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
A R I + ++ + +E SS + +
Sbjct: 136 -------AGGQRGLLAGNIGFPASEVVQAANDKDTLVMELSSF--QLMGVKEFRPHIAVI 186
Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
TNL H+DYH + + Y AK + + ++ + SKE+ K ++
Sbjct: 187 TNLMPTHLDYHGSFEDYVAAKWN-IQNQMSSSDFLVLNFNQGISKELAKTTK---ATIVP 242
Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
K A +Q+ E +PG V NAL + GI +
Sbjct: 243 FSTTEKVDG-----AYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISN 297
Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
++ E L V R + +G G Y D T ++ K + + ++I++
Sbjct: 298 QVIRETLSNFGGVKHRLQSLGKV-HGISFYNDSKST--NILATQKALSGFDNTKVILI-- 352
Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
GG + + L + ++ + R ++ + + + +A+
Sbjct: 353 AGGLDRGNEFDELIPDITGLKHMVVLGESASR------VKRAAQKAGVTYSDALDVRDAV 406
Query: 450 RTAIEMLNKQDVLVVAGKG 468
A E+ + DV++++
Sbjct: 407 HKAYEVAQQGDVILLSPAN 425
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A*
2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A*
3uag_A* 2uag_A*
Length = 439
Score = 110 bits (275), Expect = 9e-25
Identities = 77/429 (17%), Positives = 137/429 (31%), Gaps = 58/429 (13%)
Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
D+R G + + G L A+ IV S I P L
Sbjct: 34 MDTRMTPPGLDKLPEAVERHTGSL--NDEWLMAADLIVASPG---------IALAHPSLS 82
Query: 95 -VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
+ + + I+A+TG++GKS+V + V ++ + +G +G I
Sbjct: 83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG---VNVGVGGNI 139
Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
A +E SS L+ ++ +A + N+
Sbjct: 140 GLPALMLL-----------------DDECELYVLELSSFQLETTS--SLQAVAATILNVT 180
Query: 214 RDHIDYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
DH+D + Q Y AK+R++ ++ ADDA + + +++G
Sbjct: 181 EDHMDRYPFGLQQYRAAKLRIY----ENAKVCVVNADDALTMPIRGADERCVSFGVNMGD 236
Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
+ ++V E L G+ NAL A L A G+ A
Sbjct: 237 YHLNHQQGETWLRVKGEKVLNVKE-------MKLSGQHNYTNALAALALADAAGLPRASS 289
Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
L+ L +P RFE V ++ I A S E L + + +++ G
Sbjct: 290 LKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLL---GGD 346
Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
+ P+ + D + D + AE +A+R
Sbjct: 347 GKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTE---------TMEQAMRLL 397
Query: 453 IEMLNKQDV 461
+ D+
Sbjct: 398 APRVQPGDM 406
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase,
bacterial cell WALL; 2.50A {Escherichia coli}
Length = 491
Score = 106 bits (264), Expect = 1e-23
Identities = 73/423 (17%), Positives = 127/423 (30%), Gaps = 51/423 (12%)
Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGT 123
+ A +VVSSA I ++ P +V + + + +A+ GT
Sbjct: 77 RDASVVVVSSA---------ISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGT 127
Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
GK++ + V I +GL + + A + +A+A +S
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV--NGGLVKAAGVHARLGHGRYLIAEADESDAS---- 181
Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
++ + TN+ DH+D +Q F LP
Sbjct: 182 ---------------FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226
Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
A++ DD +E++ R + + +
Sbjct: 227 AVMCVDDPVIRELLPRVGRQ-TTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVT 285
Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR------ 357
PG NA A + GID +L LE RF+F+G
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGT 345
Query: 358 --IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIA 413
+ DY H ++ +K R +V R R + A L D
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGW-PDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTL 404
Query: 414 IVTDDNPRSEDPEKI--RAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
++ + P E P + I G I + +L D+++V G
Sbjct: 405 LMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQG 464
Query: 467 KGH 469
G+
Sbjct: 465 AGN 467
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 101 bits (251), Expect = 5e-22
Identities = 51/360 (14%), Positives = 101/360 (28%), Gaps = 16/360 (4%)
Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
+ V GT+GK + ++ I +G + + + + R+ A S
Sbjct: 50 FVFTVAGTNGKGTTCRTLESILMAAGYKVGVYS-SPHLVRYTERVRVQGQELPESAHTAS 108
Query: 176 YLSSQGVTHVSVEASSHGLDQH--------RLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
+ + +LD + L G L +I
Sbjct: 109 FAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTS 168
Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
A +ES A S++ ++ Q K L++ N
Sbjct: 169 IALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMPSTIADVAQEKGALLQRRGVEWN 228
Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
D V A L + +
Sbjct: 229 YSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENAIRDGIASAILPG 288
Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
S R+ D AH ++ E + ++ + +GR++ V G D+D + +
Sbjct: 289 RFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD--IAGTLAWLK 346
Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
+ D + PR E++ + +G + +A A+ +D ++V G
Sbjct: 347 SVVDDWYCAPLEGPRGATAEQLLEHLGNG----KSFDSVAQAWDAAMADAKAEDTVLVCG 402
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational
change, peptidoglycan synthesis, cell division, cobalt
binding; HET: ADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2vor_A*
Length = 487
Score = 95.1 bits (235), Expect = 3e-20
Identities = 65/434 (14%), Positives = 125/434 (28%), Gaps = 74/434 (17%)
Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG----------L 142
+ L P+ + + GT+GK+SVA V + L
Sbjct: 48 TRISALMDLL------GSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHL 101
Query: 143 SSF---------QIGPTSTISSFAQDNRL------------------TTPSPIYLAKALS 175
S I P ++++ + L + + A
Sbjct: 102 QSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTA-MAF 160
Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---QTQQAYFNAKMR 232
+ V+V G + I T + DH+DY A A +
Sbjct: 161 AAFADAPVDVAVVEVGMGGRWDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGII 220
Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
++ A+I EV+ A + +F L++ A+ +
Sbjct: 221 TRAPDGSPDTVAVIGRQVPKVMEVLL-AESVRADASVAREDSEFAVLRRQIAVGGQVLQL 279
Query: 293 ISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
+ G D PL GE Q +NA L + G L + + +
Sbjct: 280 QGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPGRL 339
Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALD 408
+++D AH + + + ++ V GD+D +
Sbjct: 340 ERMRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDG---ILAALEP 396
Query: 409 LAD-IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLN-------- 457
+ D + + + +PR+ D E + N +AI A +++
Sbjct: 397 VFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDV 456
Query: 458 -----KQDVLVVAG 466
+ +V+ G
Sbjct: 457 AGDAFSRTGIVITG 470
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate
ligase; structural genomics, MCSG, PSI-2; 1.90A
{Haemophilus ducreyi}
Length = 163
Score = 86.3 bits (213), Expect = 1e-17
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 8/147 (5%)
Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
+ G+D L E+L R E G + +Y D+AH ++ + +R +
Sbjct: 8 SSGVD--LGTENLYFQSNAQRRLEVKGVVN-NITVYDDFAHHPTAITATIDALRAKVGQQ 64
Query: 384 IIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
I+ ++A L AD + ++ A + I
Sbjct: 65 RILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLAQPA---IS 121
Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
+ E + ++ D +++ G
Sbjct: 122 ADDVDELVMRIVQQAKPNDHILIMSNG 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 70.7 bits (173), Expect = 7e-13
Identities = 78/469 (16%), Positives = 144/469 (30%), Gaps = 158/469 (33%)
Query: 61 PQAIAQGA-E-AIVVSSAYS-----LQD-FSATIRSNTPILVVDNTR--------KFLSL 104
P ++ G+ E ++V +A LQ+ F+ + T D+ KFL
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
+S + V + F + + + + + Q+N T
Sbjct: 68 VSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDIHAL-------AAKLLQENDTTL 116
Query: 165 PSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDG-IKLIA--GSFTNLGRDHI-DY 219
L K Y++++ + + S+ L + +G +L+A G G+ + DY
Sbjct: 117 VKTKELIKN--YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-----GQGNTDDY 169
Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGC-RVLSVGYQG- 274
FEEL +Y Y +++K + A L
Sbjct: 170 --------------FEEL------RDLY--QTYHVLVGDLIKFS--AETLSELIRTTLDA 205
Query: 275 KFIHLKKVCA---IHNKQQVTISVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAI 325
+ + + + + N D D+L PL G Q+ + +V +
Sbjct: 206 EKVFTQGLNILEWLENPSNT------PDKDYLLSIPISCPLIGVIQLAHYVVT---AKLL 256
Query: 326 GIDSALVLEHLEKLHVVPGRFE--FVGT--NSRGGRIYVDYA-HTSNSLEMILKNIRT-I 379
G PG G +S+G + A ++S E ++R I
Sbjct: 257 GFT--------------PGELRSYLKGATGHSQG--LVTAVAIAETDSWESFFVSVRKAI 300
Query: 380 TSGRIIVVF--GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---H 434
T V+F G R + P + P I + +
Sbjct: 301 T-----VLFFIGV---RCY--------------------EAYPNTSLPPSILEDSLENNE 332
Query: 435 GIPG---------------FIEKGNRI--EAIRTAIEMLNKQDVLVVAG 466
G+P ++ K N + I ++N LVV+G
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 70.0 bits (171), Expect = 1e-12
Identities = 90/508 (17%), Positives = 148/508 (29%), Gaps = 227/508 (44%)
Query: 3 LQDL--IYKDFPE-LINQLSIFPMQWRERKINEVSSD----SRHIQAG-----WIFVAIV 50
L+DL Y LI + ++E+ + G W+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSA--------ETLSELIRTTLDAEKVFTQGLNILEWL----- 219
Query: 51 GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL--------VVDNTRKFL 102
+ Y L S I S P++ VV T K L
Sbjct: 220 ---------------ENPSN-TPDKDYLL---SIPI-S-CPLIGVIQLAHYVV--TAKLL 256
Query: 103 SL----FASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIG------- 148
S L G H + ++ + S SF + R ++ F IG
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--RKAITVLFFIGVRCYEAY 314
Query: 149 PTSTIS-SFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
P +++ S +D N PSP+ LS +S L Q ++
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPM--------LS------IS------NLTQEQVQ---- 350
Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADDAYSKEVMKRAH 261
D+++ +T N+ LP +++ V+
Sbjct: 351 ----------DYVN--KT-----NSH-------LPAGKQVEISLVNGAKNL---VV---- 379
Query: 262 NAGCRVLSVGYQGKFIHLKKVCA--------I-HNKQQVTISVEGKDFDFLFPLPGEFQV 312
+G S+ G + L+K A I +++++ S FL P+ F
Sbjct: 380 -SG-PPQSL--YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----FL-PVASPFHS 429
Query: 313 -YNALVAAGLCIAIGIDSALVLEHLEKLHV--------VPGRFEFV-----GTNSRGGRI 358
LV A S L+ + L K +V +P V G++ R
Sbjct: 430 HL--LVPA---------SDLINKDLVKNNVSFNAKDIQIP-----VYDTFDGSDLR---- 469
Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI------------IVVFGCGGD----------RD- 395
+ + E I + I + I+ FG GG +D
Sbjct: 470 ----VLSGSISERI---VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSE 423
G R I +A L D NP +
Sbjct: 523 TGVRVI---VAGTL-------DINPDDD 540
Score = 30.3 bits (68), Expect = 1.1
Identities = 44/306 (14%), Positives = 73/306 (23%), Gaps = 135/306 (44%)
Query: 75 SAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
AYS + + + S +LV AS+L F
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTA----SFFIASQLQ-------------------EQFN 38
Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
+ + P T FA D+ T +P L +L +VS
Sbjct: 39 KIL------------PEPT-EGFAADDEPT--TPAELV--GKFLG-----YVS------- 69
Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
++ Q F+++L
Sbjct: 70 ---SLVE-----------------PSKVGQ----------FDQVL--------------- 84
Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
+ N L +G IH Q + K + + + Y
Sbjct: 85 NLCLTEFEN---CYL----EGNDIH----ALAAKLLQENDTTLVKTKELI-------KNY 126
Query: 314 -NALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVD-----YA 363
A + A +SAL + +L + F G Y + Y
Sbjct: 127 ITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAI---FGGQGNTDD----YFEELRDLY- 177
Query: 364 HTSNSL 369
T + L
Sbjct: 178 QTYHVL 183
>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase;
nucleotide-binding, peptidoglycan synthesis, MURD
ligase, ATP-binding, cell division, UMA, ADP; HET: KCX
UMA ADP; 1.52A {Escherichia coli} SCOP: c.5.1.1 c.59.1.1
c.72.2.1 PDB: 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A*
2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 445
Score = 61.7 bits (148), Expect = 4e-10
Identities = 68/437 (15%), Positives = 128/437 (29%), Gaps = 56/437 (12%)
Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
R + D+R G + + G L A+ IV S
Sbjct: 26 LARGVTPRVMDTRMTPPGLDKLPEAVERHTGSL--NDEWLMAADLIVASPG--------- 74
Query: 86 IRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
I P L + + + I+A+TG++GKS+V + V ++ + +G++
Sbjct: 75 IALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 134
Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
G + D+ ++
Sbjct: 135 GVGGNIGLPALMLLDDECELYVLEL----------------------SSFQLETTSSLQA 172
Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
+A + N+ DH+D + + A ++ ADDA + +
Sbjct: 173 VAATILNVTEDHMDRYPFGLQQYRAAKLRIY---ENAKVCVVNADDALTMPIRGADERCV 229
Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
+++G + ++V E L G+ NAL A L A
Sbjct: 230 SFGVNMGDYHLNHQQGETWLRVKGEKVLNVKE-------MKLSGQHNYTNALAALALADA 282
Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
G+ A L+ L +P RFE V + G R D T ++ + +
Sbjct: 283 AGLPRASSLKALTTFTGLPHRFEVVLEH-NGVRWINDSKAT--NVGSTEAALNGLHVDGT 339
Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
+ + G + P+ + D + D + AE
Sbjct: 340 LHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTE---------T 390
Query: 445 RIEAIRTAIEMLNKQDV 461
+A+R + D+
Sbjct: 391 MEQAMRLLAPRVQPGDM 407
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
MESO-diaminopimelate ligase; structural genomics, PSI-2,
protein structure initiative; 2.55A {Neisseria
meningitidis MC58}
Length = 326
Score = 57.0 bits (136), Expect = 1e-08
Identities = 31/221 (14%), Positives = 59/221 (26%), Gaps = 15/221 (6%)
Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178
V GT GK++ AS + + + +GL+ + + T +
Sbjct: 113 VAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIE 172
Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
+ + S + + NL DH D A L +
Sbjct: 173 ADEYDTAFFDKRSKFVHYRPRTAV------LNNLEFDHADIFADLGAIQTQFHYLVRTVP 226
Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
+ + + K + + H + + + ++GK
Sbjct: 227 SEGLIVCNGRQQSLQDTLDKGCW-------TPVEKFGTEHGWQAGEANADGSFDVLLDGK 279
Query: 299 D-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
+ L G NAL +G+D E L
Sbjct: 280 TAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGA 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.13
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 19/42 (45%)
Query: 223 QQAY--FNAKMRLFEELLPKESPAIIYADD---AYS-KEVMK 258
+QA A ++L YADD A + K M+
Sbjct: 19 KQALKKLQASLKL-------------YADDSAPALAIKATME 47
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A*
Length = 415
Score = 30.5 bits (68), Expect = 0.87
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
N+ G R + N + + + I + I+ + + K + K+A DL
Sbjct: 223 NTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQ 282
Query: 412 IAIV 415
Sbjct: 283 EQKK 286
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreductase, blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 30.3 bits (68), Expect = 0.96
Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 4/138 (2%)
Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
A L +G+ + L L+ + T +Y + + L + L
Sbjct: 134 TTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLA 193
Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
G + + C +DQ + + G + + + + P + ++ I
Sbjct: 194 AHLRQIGGTMYGAYWCPHCQDQ--KELFGAAFDQVPYVE-CSPNGPGTPQAQECTEAGIT 250
Query: 435 GIPGFIEKGNRIEAIRTA 452
P +I G +R+
Sbjct: 251 SYPTWIINGRTYTGVRSL 268
>2gwn_A Dihydroorotase; zinc-binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis W83}
Length = 452
Score = 30.2 bits (66), Expect = 1.2
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 30/85 (35%)
Query: 366 SNSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
SN+++++L+N G+ +++ G I+ I+ + P
Sbjct: 1 SNAMKILLRNALITNEGKTFPGSVMIDG-------------AFIS------RIIEGELPA 41
Query: 422 SEDPEKIRAEIIHG-----IPGFIE 441
++ E+I PG I+
Sbjct: 42 DDNLSA--DEVIECSGLRLFPGCID 64
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.4 bits (66), Expect = 1.7
Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 49/184 (26%)
Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNS--------------------------RGGRI 358
GI + L E +VP +G S +
Sbjct: 217 YGIATFFGLSPEETQAIVPIARALIGNRSAVVLKTPQGDVQSRVIPAGNLYISGEKRRGE 276
Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA------LDLADI 412
D A + ++ + + R GG ++ R +M + + + D+
Sbjct: 277 -ADVAEGAEAIMQAMSACAPVRDIRGEPGTHAGGMLERV-RKVMASLTGHEMSAIYIQDL 334
Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKG 468
V PR ++ G+ G + + ++ Q ++ +
Sbjct: 335 LAVDTFIPR---------KVQGGMAGECAMENA--VGMAAMVKADRLQMQVIARELSARL 383
Query: 469 HETV 472
V
Sbjct: 384 QTEV 387
>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease,
HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
Length = 235
Score = 29.4 bits (65), Expect = 2.0
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
G S +++ NRL PIY+ KA+ Q + L +R+
Sbjct: 75 TGHYSLYDEYSRINRLAYNLPIYVGKAVPAGWRQSRISDHETRAGSEL-SNRI 126
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 29.2 bits (66), Expect = 2.2
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEII--H 434
G+++VV G G + G A A +AI R++ E+ E+ +
Sbjct: 19 KGKVVVVTGASGPKGMGIE-----AARGCAEMGAAVAIT--YASRAQGAEENVKELEKTY 71
Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLV 463
GI K + ++ + + D +
Sbjct: 72 GIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFI 106
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.00A {Bacillus halodurans c-125}
Length = 243
Score = 29.0 bits (64), Expect = 2.7
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
+ +G VFG G IA ++ + A PE + E +
Sbjct: 36 SEAVMNGGRFYVFGSGH---------SHMIAEEIYNRAGGLALVTAILPPELMLHERPN- 85
Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
++E+ + + + +DV+++ V
Sbjct: 86 KSTYLERIEGLSKSYLKLHQVTNKDVIMIISNSGRNTVPV 125
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 28.5 bits (63), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
+ +AL +L S + H + + R IK+I
Sbjct: 110 QVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKII 146
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 28.5 bits (63), Expect = 3.6
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
N G LSV + H I N G+ F L L
Sbjct: 32 SRKNQGDFSLSVRVGDQVTH----IRIQNSGDFYDLYGGEKFATLTEL 75
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 28.3 bits (62), Expect = 4.4
Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 3/88 (3%)
Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
+ Q + + I S + E + + + + V++ G +
Sbjct: 125 DQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGLSVDT--L 182
Query: 61 PQAIAQGAEAIVVSSA-YSLQDFSATIR 87
+ ++ + R
Sbjct: 183 KLFEGVDVFTFIAGRGITEAKNPAGAAR 210
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
consortium, nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 28.2 bits (61), Expect = 4.5
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPR 421
+ ++I+++ +T D R+ G ++ AI +
Sbjct: 2 SLKRFDLIIRSSTVVTETTTYR-----ADVAIRN-------GIVS------AITEPGSIS 43
Query: 422 SEDPEKIRAEIIHGIPGFIE 441
S+D I +H PG ++
Sbjct: 44 SDDGPAIDGTGLHLFPGMVD 63
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein structure initiative; HET: PG6;
2.00A {Ruminococcus gnavus atcc 29149}
Length = 298
Score = 28.0 bits (62), Expect = 5.1
Identities = 31/256 (12%), Positives = 74/256 (28%), Gaps = 29/256 (11%)
Query: 190 SSHGLDQHRLD--GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
S G + +A D +Q K+ P+
Sbjct: 28 SCGEFTPEMKADGGFEHVALGIQIEDTQWTDDDSLKQEELLLKIAESTSCAKTSCPSPER 87
Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
++Y + + LS Y + + ++Q+ + F+
Sbjct: 88 YMESYHCDAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHV------FNSRSASV 141
Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRGGRIYVD 361
GE + + C G+ V+E +E V + + + GR+
Sbjct: 142 GETLI---ALKVQQCEKAGMTFEEVVESVECYIEEQHTYFVLENLDTL---RKNGRLTGI 195
Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVT 416
+ + +L + + + G I + + +A D+ + +AI
Sbjct: 196 KSLVAGALNIKPI-MGSTPQGT-ICQKEKARGMKKALVKMADCVAADVVNAGDKILAIAH 253
Query: 417 DDNPRSEDPEKIRAEI 432
+ E ++++ +
Sbjct: 254 CNCE--ERAKEVQRLL 267
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 28.0 bits (62), Expect = 5.5
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGI 436
+G+ I++ G ++ IA + A++A T + EK+ AE
Sbjct: 25 AGKKILITGLLSNKSIAY-----GIAKAMHREGAELAF-TYVGQFKDRVEKLCAEFNPAA 78
Query: 437 PGFIEKGNRIE---AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
+ + E ++ + D +V + + N ++ +
Sbjct: 79 VLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTRE 130
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like
fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP:
a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Length = 746
Score = 27.7 bits (61), Expect = 5.6
Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 16/64 (25%)
Query: 38 RHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN 97
+ + G FV + L + + P VVD+
Sbjct: 490 KLDREGQKFVVFADS---SLLNSTPGTGRPMPGL-------------VQYLKIPATVVDS 533
Query: 98 TRKF 101
+
Sbjct: 534 DGAW 537
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC,
structural genomics, unknown function; 1.75A
{Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Length = 77
Score = 27.7 bits (62), Expect = 5.7
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRI-EAIRTAIEML 456
D +I D DP+ +R +H + F + E I AI ++
Sbjct: 18 DSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDDDPQASNEKILEAILLV 71
>1llu_A Alcohol dehydrogenase; enzyme-coenzyme-substrate complex, proton
relay system, NADH, oxidoreductase; HET: NAD; 2.30A
{Pseudomonas aeruginosa} SCOP: b.35.1.2 c.2.1.1
Length = 342
Score = 27.5 bits (60), Expect = 6.6
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA------DIAIVTDD-------------- 418
G+ + + G GG +G +A+ A AI DD
Sbjct: 168 ARPGQWVAISGIGG---------LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLT 218
Query: 419 -NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
N R EDP + I G G + A AI M + + + G
Sbjct: 219 VNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPT 275
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
+++ + + VLV+ G G +V
Sbjct: 76 LLKSVLSQPSAGGVLVIDGAGSLHTALV 103
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain,
structural genomics, NPPSFA; NMR {Drosophila
melanogaster}
Length = 168
Score = 27.5 bits (61), Expect = 8.1
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
S DP + + + A + K ++L G V N E+K
Sbjct: 72 SNDPVTLEGTLPKYACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEK 131
Query: 482 MSVDCDI 488
+ I
Sbjct: 132 GVILTGI 138
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 27.1 bits (59), Expect = 9.5
Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 12/148 (8%)
Query: 82 FSATIRSNTPILV-------VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
+ +R + + +F + + + +HP +++++ G + + +
Sbjct: 56 YKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHP-HLVSLIGFCDERNEMILIY 114
Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
+ + L G S + + RL A+ L YL ++ + H V++ + L
Sbjct: 115 KYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA--ARGLHYLHTRAIIHRDVKSINILL 172
Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
D++ K+ + G + H +
Sbjct: 173 DEN--FVPKITDFGISKKGTELDQTHLS 198
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 27.2 bits (60), Expect = 9.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
GC G K P + + L L + ++V++ + +D E+ AE+
Sbjct: 45 GCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAEL 88
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.394
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,232,313
Number of extensions: 199894
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 53
Length of query: 497
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 401
Effective length of database: 3,365,806
Effective search space: 1349688206
Effective search space used: 1349688206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)