BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781102|ref|YP_003065515.1|
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (497 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI
Sbjct: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV
Sbjct: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ
Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK
Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF
Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV
Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP
Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK
Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480

Query: 481 KMSVDCDIIREILGLIL 497
           KMSVDCDIIREILGLIL
Sbjct: 481 KMSVDCDIIREILGLIL 497


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88
           +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++     D  A+I S 
Sbjct: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P+  VD+    L+  A     +    I+A+TG+ GK++    +        LSS +  
Sbjct: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206
             + I S+  +N +    P+ LA+            V V+     L    L  I+ +   
Sbjct: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181

Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +   H+      +   +AK  +FE  L K     +  DD++ + +  ++H
Sbjct: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240

Query: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             G + + S G  +     L+K      +  + + ++GK  + +    G     N L+  
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373
           G+   +  D    ++ L   H   GR + +    ++G    +D ++ +N   M     +L
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360

Query: 374 KNIRTITSGRIIVVFG 389
             I     GR I V G
Sbjct: 361 SQISPHGEGRRIAVLG 376


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 34.7 bits (78), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 31/121 (25%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAK 172
           +AVTGT+GKSS  + +  + +++G    Q+G     P   +  F       +P+  Y+ +
Sbjct: 116 IAVTGTNGKSSTVALISHVLRKNGY-DVQLGGNIGLPILNLEYF-------SPNRFYVIE 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             SY          +E +           I    G   N+  DH+D H T + Y N K +
Sbjct: 168 CSSY---------QIELTP---------TIDPSIGVLLNISPDHLDRHHTLENYVNIKKK 209

Query: 233 L 233
           +
Sbjct: 210 I 210


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143
           ++ + GT+GK SVASF Q++ + SGLS
Sbjct: 26  VIHIGGTNGKGSVASFSQRLLETSGLS 52


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 25.8 bits (55), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E+ +R       +  V + GK +  K+V AI  K+Q+   V GKD
Sbjct: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 25.4 bits (54), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +Q+   + G+S+  +     ISSF QDN   T  P Y
Sbjct: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 24.6 bits (52), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 114 PEN------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           PEN      IL +  +   S+  + V++I   S LS     P S+  S  +   L TP+ 
Sbjct: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGE--TLLTPTR 232

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           IY++  L  L   G        +  GL ++
Sbjct: 233 IYVSPLLKILRKTGKIKALAHITGGGLTEN 262


>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 280

 Score = 24.3 bits (51), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 24/109 (22%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +   +F+ +A+AQ ++ I++   ++  DF                R+ + L  S L    
Sbjct: 152 QQKRVFLARALAQKSQVIIMDEPFAAIDFKT-------------EREMIFLLKSLLN--- 195

Query: 114 PENILAVTGTSGKSSVASFVQQ--ICQRSGLSSFQIGPTSTISSFAQDN 160
            E+I+ +  T   +S+ SF  +    +++ L+S   G TS I  F +DN
Sbjct: 196 -EDIMILVSTHNINSIPSFCDRTIFLKKTVLAS---GLTSDI--FNEDN 238


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 24.3 bits (51), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           A +  +E+L K     +  +          G  +MS  CDIIR+I  L+
Sbjct: 134 ATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 24.3 bits (51), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           G   V  A  SNS   + +N +    G I++V GCG
Sbjct: 419 GSSLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCG 454


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,669
Number of Sequences: 1233
Number of extensions: 13254
Number of successful extensions: 46
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 16
length of query: 497
length of database: 328,796
effective HSP length: 78
effective length of query: 419
effective length of database: 232,622
effective search space: 97468618
effective search space used: 97468618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)