BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] (497 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/497 (100%), Positives = 497/497 (100%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI Sbjct: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV Sbjct: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 Query: 481 KMSVDCDIIREILGLIL 497 KMSVDCDIIREILGLIL Sbjct: 481 KMSVDCDIIREILGLIL 497 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 54.7 bits (130), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 Query: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 374 KNIRTITSGRIIVVFG 389 I GR I V G Sbjct: 361 SQISPHGEGRRIAVLG 376 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 31/121 (25%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAK 172 +AVTGT+GKSS + + + +++G Q+G P + F +P+ Y+ + Sbjct: 116 IAVTGTNGKSSTVALISHVLRKNGY-DVQLGGNIGLPILNLEYF-------SPNRFYVIE 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 SY +E + I G N+ DH+D H T + Y N K + Sbjct: 168 CSSY---------QIELTP---------TIDPSIGVLLNISPDHLDRHHTLENYVNIKKK 209 Query: 233 L 233 + Sbjct: 210 I 210 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 32.0 bits (71), Expect = 0.024, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ + GT+GK SVASF Q++ + SGLS Sbjct: 26 VIHIGGTNGKGSVASFSQRLLETSGLS 52 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 E+ +R + V + GK + K+V AI K+Q+ V GKD Sbjct: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 >gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 594 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 +Q+ + G+S+ + ISSF QDN T P Y Sbjct: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358 >gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 114 PEN------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 PEN IL + + S+ + V++I S LS P S+ S + L TP+ Sbjct: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGE--TLLTPTR 232 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 IY++ L L G + GL ++ Sbjct: 233 IYVSPLLKILRKTGKIKALAHITGGGLTEN 262 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 24/109 (22%) Query: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 + +F+ +A+AQ ++ I++ ++ DF R+ + L S L Sbjct: 152 QQKRVFLARALAQKSQVIIMDEPFAAIDFKT-------------EREMIFLLKSLLN--- 195 Query: 114 PENILAVTGTSGKSSVASFVQQ--ICQRSGLSSFQIGPTSTISSFAQDN 160 E+I+ + T +S+ SF + +++ L+S G TS I F +DN Sbjct: 196 -EDIMILVSTHNINSIPSFCDRTIFLKKTVLAS---GLTSDI--FNEDN 238 >gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 405 Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 A + +E+L K + + G +MS CDIIR+I L+ Sbjct: 134 ATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182 >gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] Length = 623 Score = 24.3 bits (51), Expect = 5.4, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 G V A SNS + +N + G I++V GCG Sbjct: 419 GSSLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCG 454 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.137 0.394 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,669 Number of Sequences: 1233 Number of extensions: 13254 Number of successful extensions: 46 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 16 length of query: 497 length of database: 328,796 effective HSP length: 78 effective length of query: 419 effective length of database: 232,622 effective search space: 97468618 effective search space used: 97468618 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)