HHsearch alignment for GI: 254781103 and conserved domain: COG0744
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=377.95 Aligned_cols=302 Identities=24% Similarity=0.317 Sum_probs=255.9
Q ss_pred CCCCCCCEEEEHHHHHHHHHHHHH-HHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 768867425552576777776442-1001132343111223023203211121001473111344432322222332456
Q gi|254781103|r 250 EKNLQPIRLALDLRIQNIVHQELV-ENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFE 328 (598)
Q Consensus 250 ~~~g~dI~lTID~~lQ~~~e~~l~-~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~ye 328 (598)
T Consensus 293 ~~~gl~I~TTlD~~~Q~~ae~~v~~~~~~~~~~~q~a~v~~d~~tG~V~A~VGg~d~~~~~---------fNrAt~a~Rq 363 (661)
T COG0744 293 LTGGLKVYTTLDPELQEAAEKAVQADPLYKLRDVQAALVLIDPKTGAVRALVGGRDYQPSG---------FNRATQAKRQ 363 (661)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC---------CCCCCCCCCC
T ss_conf 0498589957799999999999863046777650367999966898589997688898665---------3300003678
Q ss_pred CCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHC
Q ss_conf 643201235654430240320442133676322210112345432--300399985503671235432023333200110
Q gi|254781103|r 329 MGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQN--RILTIPEIFRYSSNIGAAQIADAMGIQGHKEFL 406 (598)
Q Consensus 329 PGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~--g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~ 406 (598)
T Consensus 364 ~GSt~KP~~~~~a~~~~~~~~~~~~~d-~p~~~~~~~p~N~~~~y~~g~vtl~~ALa~S~Nipav~l~~~vG~~~~~~~~ 442 (661)
T COG0744 364 PGSTFKPFLYYAALEEGKATPSTIVVD-APVTYGNWSPKNYDGRYEGGSVTLREALATSLNIPAVRLLQKVGLDKVVDTA 442 (661)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCEECC-CCEECCCCCCEECCCCCCCCEECHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
T ss_conf 852588999999997389997744526-8722378887466786568526199998719999999999986748999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCC------
Q ss_conf 12225763446865421111223355441001146875213001002211001107823010899986307885------
Q gi|254781103|r 407 YRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEK------ 480 (598)
Q Consensus 407 ~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~------ 480 (598)
T Consensus 443 ~~lGi~~~~~------------------~~~s~~lg-~~~~sp~~ma~aY~~fangG~~~~p~~I~ki~~~~Gvl~~~~~ 503 (661)
T COG0744 443 KKLGINSPLV------------------PGPSLALG-ASEVSPLEMASAYATFANGGTYYPPHFIRKVTDADGVLYDNPP 503 (661)
T ss_pred HHHCCCCCCC------------------CCCCCCCC-CCCCCHHHHHHHHHHHHHCCEECCCEEEEEEECCCCCEEECCC
T ss_conf 9829988888------------------86522268-8889899999989999609833587468999889970763699
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCC-CCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 032018999999999999987338-8464104797357667240351268876688621799999742888099999980
Q gi|254781103|r 481 VSRIVLKKNTVKTMRSLLREGVTG-GSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMD 559 (598)
Q Consensus 481 ~~~~vis~~~a~~l~~~l~~vv~~-GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~ 559 (598)
T Consensus 504 ~~~rv~~~~~a~~m~~ml~~vv~~tg~~~~a~~~~~~~~GKTGTt~~---------~~D~WfvG~tp----~~~~avW~G 570 (661)
T COG0744 504 KVKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKLPGPYAAGKTGTTND---------NRDAWFVGYTP----QLTTAVWLG 570 (661)
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---------CCCEEEEEECC----CEEEEEEEE
T ss_conf 86363089899999999999876507610025676555665678898---------76417983158----758999984
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78888888743214678999999999999818998
Q gi|254781103|r 560 SPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKP 594 (598)
Q Consensus 560 ~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P 594 (598)
T Consensus 571 ~d~~-~~~~~~g~s~~a~iw~~~m~~a~~~~~~~~ 604 (661)
T COG0744 571 NDDN-PLTPLTGGSDAAAIWKEFMGQALPGGLRVP 604 (661)
T ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 5899-875676776189999999998722687778