HHsearch alignment for GI: 254781103 and conserved domain: PRK11669
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional.
Probab=98.40 E-value=6.2e-07 Score=62.89 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCC--C
Q ss_conf 34311122302320321112100147311134443232222233245664320123565443024032044213367--6
Q gi|254781103|r 281 AESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRN--P 358 (598)
Q Consensus 281 a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~--~ 358 (598)
T Consensus 38 i~A~sail~D~~TG~VLy~k-------------------n--~d~~~~pAS~TKlMTalv~le~~-~~ld~~v~v~~~~~ 95 (308)
T PRK11669 38 LASGSAMVVDLNTNKVIYSS-------------------N--PDLVVPIASITKLMTAMVVLDAK-LPLDEKLKVDISQT 95 (308)
T ss_pred CCCEEEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEHHHH
T ss_conf 45408999999999690015-------------------8--29984878999999999998178-99887699767762
Q ss_pred CCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCEEEEEEECCC------CCCCHHHCCCCCCCC
Q ss_conf 322210112345432300399----9855036712354320233------332001101222576
Q gi|254781103|r 359 IKVGKHVIHDYHPQNRILTIP----EIFRYSSNIGAAQIADAMG------IQGHKEFLYRLGLLS 413 (598)
Q Consensus 359 ~~~~~~~i~~~~~~~g~it~~----~al~~S~Nv~~~~i~~~lg------~~~~~~~~~~fG~g~ 413 (598)
T Consensus 96 ~~~~~~~-s~l~-~G~~~tv~dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~ 158 (308)
T PRK11669 96 PEMKGVY-SRVR-LNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKN 158 (308)
T ss_pred HHCCCCC-CCCC-CCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 0006874-4334-7988889999999987465299999999707679999999999999829998