HHsearch alignment for GI: 254781103 and conserved domain: TIGR03423
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=100.00 E-value=0 Score=920.17 Aligned_cols=501 Identities=28% Similarity=0.415 Sum_probs=442.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEEEEECCHHH-----HCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCH
Q ss_conf 47999999999999999864313434415323-----2100046651799745764870816869779999973380998
Q gi|254781103|r 72 NRIGMTIVVCLVIYIILAIRIIQYGNIHPEPI-----APSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISP 146 (598)
Q Consensus 72 ~Ri~il~~v~~ii~~il~~rl~~lq~~~~~~~-----~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~ 146 (598)
T Consensus 1 rR~~il~~~i~~~~~~li~RL~~lQv~~~~~y~~~a~~~~~~~~~i~a~RG~I~DrnG~~LA~s~~~~~l~~~p~~~~d~ 80 (592)
T TIGR03423 1 RRALVAGGLVLALFGVLAARLYYLQVIRGEEYATLSEDNRIRLVPIPPPRGLILDRNGVLLADNRPSFSLEIVPEKVDDL 80 (592)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCCH
T ss_conf 90699999999999999999863321006999999973737988965899858948999826433344999973452799
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHH---HCCCCE--EEEECCCCHHHHHHHH--HHHCCCCEECCHHHHHHHHCCCCCCCCC
Q ss_conf 99999998880799989999985---136762--8961379999999976--3101375012023333210000001111
Q gi|254781103|r 147 DEIIEKLQIVLPNLDSEMIRRKL---SSETKF--QWLRRKLSPQQQKRIL--SFGLPGVGFRLEKSRFYPAASHASHVVG 219 (598)
Q Consensus 147 ~~~~~~L~~il~~~~~~~i~~~l---~~~~~~--~~i~r~is~~~~~~I~--~~~lpGi~~~~~~~R~YP~~~lashiiG 219 (598)
T Consensus 81 ~~~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~~~~i~~~~~~lpGi~~~~~~~R~YP~g~~~s~vlG 159 (592)
T TIGR03423 81 DATLDRLAKLL-DLDPEDIARFLKELKRSRRFEPIPLKSDLTEEEVARFAVNQYRLPGVEIEARLKRYYPYGELAAHVLG 159 (592)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHEEE
T ss_conf 99999999871-95999999999875424885279987579999999999741559966887613774787522221322
Q ss_pred CCCC-----------------CCCCCCCCEEECCCCC-----CCEEEECC----------CCCCCCCCCEEEEHHHHHHH
Q ss_conf 1124-----------------6875123100014668-----51689536----------66768867425552576777
Q gi|254781103|r 220 YVDI-----------------DNRGITGIEKFLDMQG-----LTRVFTTN----------KGEKNLQPIRLALDLRIQNI 267 (598)
Q Consensus 220 yv~~-----------------d~~G~~GlE~~~d~~g-----~~~~~~~~----------~~~~~g~dI~lTID~~lQ~~ 267 (598)
T Consensus 160 yv~~~~~~dl~~~~~~~y~~~d~vG~~GlE~~yd~~L~G~~G~~~~~~d~~g~~i~~~~~~~~~~G~~v~LTID~~lQ~~ 239 (592)
T TIGR03423 160 YVGRINEEDLERLEPANYAGGDYIGKLGIEKYYEDDLRGKPGYREVEVNARGRVIRTLSRVPPVPGKDLVLTIDARLQQA 239 (592)
T ss_pred ECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf 02557878874200013677663222316999887717998850799768997502332368999985799988999999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 7764421001132343111223023203211121001473111344------------4323222223324566432012
Q gi|254781103|r 268 VHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG------------KKEGWFNRISYGIFEMGSIFKV 335 (598)
Q Consensus 268 ~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~------------~~~~~~Nra~~~~yePGStfKp 335 (598)
T Consensus 240 ae~~l~~-------~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~ 312 (592)
T TIGR03423 240 AEKALGG-------RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKP 312 (592)
T ss_pred HHHHHHC-------CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
T ss_conf 9998615-------735699996688848999617887702303787988999874396654212011224468726899
Q ss_pred HHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCC
Q ss_conf 3565443024032044213367632221011234543-230039998550367123543202333320011012225763
Q gi|254781103|r 336 FTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSK 414 (598)
Q Consensus 336 ~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~ 414 (598)
T Consensus 313 ~t~aaaLe~g~i~~~~~~~~~g~~~~~~~~i~d~~~~~~g~lt~~~~l~~SsNvg~~~ia~~lg~~~~~~~~~~fGfg~~ 392 (592)
T TIGR03423 313 FVALAALEEGVITPDTRINCPGYFQLGGRRFRCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQK 392 (592)
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECHHHHHHEEECHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 99999997599999858960783025985230478888630145544103833999789886187889999984678877
Q ss_pred CCCCCCCCCCCCCCC----------CCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC--
Q ss_conf 446865421111223----------355441001146875-2130010022110011078230108999863078850--
Q gi|254781103|r 415 LETELPEIQAPSYPS----------QWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV-- 481 (598)
Q Consensus 415 t~idlp~e~~g~~p~----------~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~-- 481 (598)
T Consensus 393 tgidlp~E~~G~lp~~~w~~~~~~~~~~~~~~~~~siGQG~i~~TplQla~a~~~iaN~G~~~~P~lv~~i~d~~g~~~~ 472 (592)
T TIGR03423 393 TGIDLPGEKSGLVPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ 472 (592)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEE
T ss_conf 68998777488689968976420577774423354103674315889999999988619838521899975168885664
Q ss_pred ------CCC-CCCHHHHHHHHHHHHHHHCC--CCEEECCCC-CEEEEEECCEEEECC---CCCCCC------CCCEEEEE
Q ss_conf ------320-18999999999999987338--846410479-735766724035126---887668------86217999
Q gi|254781103|r 482 ------SRI-VLKKNTVKTMRSLLREGVTG--GSGRRAFVP-GFEVGGKTGTAQKVI---KKRYSD------TLNFNSFL 542 (598)
Q Consensus 482 ------~~~-vis~~~a~~l~~~l~~vv~~--GTg~~a~~~-g~~vaGKTGTAq~~~---~g~y~~------~~~~~~Fv 542 (598)
T Consensus 473 ~~~~~~~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~~~~~~~~~~~~~~~~~~~~asFv 552 (592)
T TIGR03423 473 ETEPEVLPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVSLKQGEKYDAEQIPERLRDHALFV 552 (592)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 04875456657899999999999999832899475752489998799996367624578875325554554567777999
Q ss_pred EEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 997428880999999807888888874321467899999999999
Q gi|254781103|r 543 AVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSA 587 (598)
Q Consensus 543 G~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~ 587 (598)
T Consensus 553 G~~P~~~P~~~v~V~v~~~-------~~Gg~~AaPvf~~I~e~y~ 590 (592)
T TIGR03423 553 AFAPYDNPEIAVAVIVEHG-------GGGSSAAAPIARKIMDAYF 590 (592)
T ss_pred EEEECCCCEEEEEEEEECC-------CCCHHHHHHHHHHHHHHHH
T ss_conf 9978789879999999689-------9511489999999999985