HHsearch alignment for GI: 254781103 and conserved domain: TIGR03423

>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=100.00  E-value=0  Score=920.17  Aligned_cols=501  Identities=28%  Similarity=0.415  Sum_probs=442.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHEEEEEECCHHH-----HCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCH
Q ss_conf             47999999999999999864313434415323-----2100046651799745764870816869779999973380998
Q gi|254781103|r   72 NRIGMTIVVCLVIYIILAIRIIQYGNIHPEPI-----APSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISP  146 (598)
Q Consensus        72 ~Ri~il~~v~~ii~~il~~rl~~lq~~~~~~~-----~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~  146 (598)
T Consensus         1 rR~~il~~~i~~~~~~li~RL~~lQv~~~~~y~~~a~~~~~~~~~i~a~RG~I~DrnG~~LA~s~~~~~l~~~p~~~~d~   80 (592)
T TIGR03423         1 RRALVAGGLVLALFGVLAARLYYLQVIRGEEYATLSEDNRIRLVPIPPPRGLILDRNGVLLADNRPSFSLEIVPEKVDDL   80 (592)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCCH
T ss_conf             90699999999999999999863321006999999973737988965899858948999826433344999973452799


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHH---HCCCCE--EEEECCCCHHHHHHHH--HHHCCCCEECCHHHHHHHHCCCCCCCCC
Q ss_conf             99999998880799989999985---136762--8961379999999976--3101375012023333210000001111
Q gi|254781103|r  147 DEIIEKLQIVLPNLDSEMIRRKL---SSETKF--QWLRRKLSPQQQKRIL--SFGLPGVGFRLEKSRFYPAASHASHVVG  219 (598)
Q Consensus       147 ~~~~~~L~~il~~~~~~~i~~~l---~~~~~~--~~i~r~is~~~~~~I~--~~~lpGi~~~~~~~R~YP~~~lashiiG  219 (598)
T Consensus        81 ~~~~~~L~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~~~~~~i~~~~~~lpGi~~~~~~~R~YP~g~~~s~vlG  159 (592)
T TIGR03423        81 DATLDRLAKLL-DLDPEDIARFLKELKRSRRFEPIPLKSDLTEEEVARFAVNQYRLPGVEIEARLKRYYPYGELAAHVLG  159 (592)
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHEEE
T ss_conf             99999999871-95999999999875424885279987579999999999741559966887613774787522221322


Q ss_pred             CCCC-----------------CCCCCCCCEEECCCCC-----CCEEEECC----------CCCCCCCCCEEEEHHHHHHH
Q ss_conf             1124-----------------6875123100014668-----51689536----------66768867425552576777
Q gi|254781103|r  220 YVDI-----------------DNRGITGIEKFLDMQG-----LTRVFTTN----------KGEKNLQPIRLALDLRIQNI  267 (598)
Q Consensus       220 yv~~-----------------d~~G~~GlE~~~d~~g-----~~~~~~~~----------~~~~~g~dI~lTID~~lQ~~  267 (598)
T Consensus       160 yv~~~~~~dl~~~~~~~y~~~d~vG~~GlE~~yd~~L~G~~G~~~~~~d~~g~~i~~~~~~~~~~G~~v~LTID~~lQ~~  239 (592)
T TIGR03423       160 YVGRINEEDLERLEPANYAGGDYIGKLGIEKYYEDDLRGKPGYREVEVNARGRVIRTLSRVPPVPGKDLVLTIDARLQQA  239 (592)
T ss_pred             ECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf             02557878874200013677663222316999887717998850799768997502332368999985799988999999


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             7764421001132343111223023203211121001473111344------------4323222223324566432012
Q gi|254781103|r  268 VHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG------------KKEGWFNRISYGIFEMGSIFKV  335 (598)
Q Consensus       268 ~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~------------~~~~~~Nra~~~~yePGStfKp  335 (598)
T Consensus       240 ae~~l~~-------~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~  312 (592)
T TIGR03423       240 AEKALGG-------RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKP  312 (592)
T ss_pred             HHHHHHC-------CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHH
T ss_conf             9998615-------735699996688848999617887702303787988999874396654212011224468726899


Q ss_pred             HHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCC
Q ss_conf             3565443024032044213367632221011234543-230039998550367123543202333320011012225763
Q gi|254781103|r  336 FTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQ-NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSK  414 (598)
Q Consensus       336 ~t~aaaLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~-~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~  414 (598)
T Consensus       313 ~t~aaaLe~g~i~~~~~~~~~g~~~~~~~~i~d~~~~~~g~lt~~~~l~~SsNvg~~~ia~~lg~~~~~~~~~~fGfg~~  392 (592)
T TIGR03423       313 FVALAALEEGVITPDTRINCPGYFQLGGRRFRCWKRGGHGRVDLRKAIEESCDVYFYQLALRLGIDKIAEYAKKFGFGQK  392 (592)
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECHHHHHHEEECHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf             99999997599999858960783025985230478888630145544103833999789886187889999984678877


Q ss_pred             CCCCCCCCCCCCCCC----------CCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCC--
Q ss_conf             446865421111223----------355441001146875-2130010022110011078230108999863078850--
Q gi|254781103|r  415 LETELPEIQAPSYPS----------QWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV--  481 (598)
Q Consensus       415 t~idlp~e~~g~~p~----------~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~--  481 (598)
T Consensus       393 tgidlp~E~~G~lp~~~w~~~~~~~~~~~~~~~~~siGQG~i~~TplQla~a~~~iaN~G~~~~P~lv~~i~d~~g~~~~  472 (592)
T TIGR03423       393 TGIDLPGEKSGLVPSREWKRKRFGQPWYPGDTLNVSIGQGYVLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQ  472 (592)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEE
T ss_conf             68998777488689968976420577774423354103674315889999999988619838521899975168885664


Q ss_pred             ------CCC-CCCHHHHHHHHHHHHHHHCC--CCEEECCCC-CEEEEEECCEEEECC---CCCCCC------CCCEEEEE
Q ss_conf             ------320-18999999999999987338--846410479-735766724035126---887668------86217999
Q gi|254781103|r  482 ------SRI-VLKKNTVKTMRSLLREGVTG--GSGRRAFVP-GFEVGGKTGTAQKVI---KKRYSD------TLNFNSFL  542 (598)
Q Consensus       482 ------~~~-vis~~~a~~l~~~l~~vv~~--GTg~~a~~~-g~~vaGKTGTAq~~~---~g~y~~------~~~~~~Fv  542 (598)
T Consensus       473 ~~~~~~~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~~~~~~~~~~~~~~~~~~~~asFv  552 (592)
T TIGR03423       473 ETEPEVLPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVSLKQGEKYDAEQIPERLRDHALFV  552 (592)
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             04875456657899999999999999832899475752489998799996367624578875325554554567777999


Q ss_pred             EEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             997428880999999807888888874321467899999999999
Q gi|254781103|r  543 AVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSA  587 (598)
Q Consensus       543 G~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~  587 (598)
T Consensus       553 G~~P~~~P~~~v~V~v~~~-------~~Gg~~AaPvf~~I~e~y~  590 (592)
T TIGR03423       553 AFAPYDNPEIAVAVIVEHG-------GGGSSAAAPIARKIMDAYF  590 (592)
T ss_pred             EEEECCCCEEEEEEEEECC-------CCCHHHHHHHHHHHHHHHH
T ss_conf             9978789879999999689-------9511489999999999985