HHsearch alignment for GI: 254781103 and conserved domain: pfam00768
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=98.56 E-value=4.2e-08 Score=70.30 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=113.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEECCCCCCCCC
Q ss_conf 343111223023203211121001473111344432322222332456643201235654430---24032044213367
Q gi|254781103|r 281 AESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SGLFTVKDLFDTRN 357 (598)
Q Consensus 281 a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g~i~~~~~~~~~~ 357 (598)
T Consensus 10 i~A~saiv~D~~tg~iL~~k-------------------n--~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~ 68 (241)
T pfam00768 10 IAAKSAILVDYNTGKVLYEK-------------------N--ADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISE 68 (241)
T ss_pred CCCEEEEEEECCCCCEEEEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCH
T ss_conf 65129999999999790006-------------------9--09981778999999999999975628988544421018
Q ss_pred CC-CCCC-CCCCC-CCCCCCCCCHHH----HHHCCCCCEEEEEEECCC------CCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 63-2221-01123-454323003999----855036712354320233------33200110122257634468654211
Q gi|254781103|r 358 PI-KVGK-HVIHD-YHPQNRILTIPE----IFRYSSNIGAAQIADAMG------IQGHKEFLYRLGLLSKLETELPEIQA 424 (598)
Q Consensus 358 ~~-~~~~-~~i~~-~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg------~~~~~~~~~~fG~g~~t~idlp~e~~ 424 (598)
T Consensus 69 ~~~~~~~~~~~s~~~l~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~-T~F~np---~ 144 (241)
T pfam00768 69 YAYALGNFRGSSNMFLKPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKN-TRFVNP---T 144 (241)
T ss_pred HHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CEEECC---C
T ss_conf 899863788873465348999889999999987564599999999845829999999999999819999-866668---7
Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 11223355441001146875213001002211001107823010899986307885032018999999999999987338
Q gi|254781103|r 425 PSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVTG 504 (598)
Q Consensus 425 g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~~ 504 (598)
T Consensus 145 GL~~~--------------~~~sTA~Dla~l~~~~~~~----~~~~~~~~~~~~~~~~~----~~---------~~~~~~ 193 (241)
T pfam00768 145 GLDNH--------------GQYSSARDLAILARALIKD----LPEVLSITKEKSATFNT----PI---------YKINWM 193 (241)
T ss_pred CCCCC--------------CCEECHHHHHHHHHHHHHH----CHHHEEEEEEEEEEECC----CC---------CEEEEE
T ss_conf 77788--------------8666799999999999874----95840888778999747----87---------358997
Q ss_pred CCEEECCCCCEE-EEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf 846410479735-76672403512688766886217999997428880999999807
Q gi|254781103|r 505 GSGRRAFVPGFE-VGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDS 560 (598)
Q Consensus 505 GTg~~a~~~g~~-vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~ 560 (598)
T Consensus 194 NtN~ll~~~~~~v~G~KTG~T~~AG----------~clv~~a~~~g~~~-I~VvLgs 239 (241)
T pfam00768 194 NTNGLLYRKGGNVDGLKTGYTKEAG----------YCLVATATEGGMRV-ISVVLNA 239 (241)
T ss_pred CCCCHHHCCCCCEEEEEEEEECCCC----------CEEEEEEEECCEEE-EEEEECC
T ss_conf 3795100579857999952531666----------45999999999899-9999499