HHsearch alignment for GI: 254781103 and conserved domain: pfam03717
>pfam03717 PBP_dimer Penicillin-binding Protein dimerization domain. This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerisation. The domain forms a largely disordered 'sugar tongs' structure.
Probab=99.96 E-value=1.4e-28 Score=200.39 Aligned_cols=137 Identities=39% Similarity=0.593 Sum_probs=120.1
Q ss_pred ECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCH-HHHHHHHHHHHCCCCHHHHHHHHHCC----CCEEEEECCCCHHH
Q ss_conf 51799745764870816869779999973380998-99999998880799989999985136----76289613799999
Q gi|254781103|r 112 YGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISP-DEIIEKLQIVLPNLDSEMIRRKLSSE----TKFQWLRRKLSPQQ 186 (598)
Q Consensus 112 i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~-~~~~~~L~~il~~~~~~~i~~~l~~~----~~~~~i~r~is~~~ 186 (598)
T Consensus 1 i~a~RG~I~DrnG~~LA~n~~~~~l~i~p~~~~~~~~~~~~~L~~~l-~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~ 79 (165)
T pfam03717 1 IPAPRGEILDRNGRVLATNVPVYSVYVDPKEVEDELKETAEKLAKIL-GLDPEEILKKLKEKDAKSYEPVVLARNLSPEE 79 (165)
T ss_pred CCCCCCCEECCCCCEEEECCEEEEEEEEHHHCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 98999868958999968544155999983570782999999999881-97999999999873146862799877899999
Q ss_pred HHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCC-----------CCCCCEEECCCCC-----CCEEEECCCC
Q ss_conf 9997631013750120233332100000011111124687-----------5123100014668-----5168953666
Q gi|254781103|r 187 QKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNR-----------GITGIEKFLDMQG-----LTRVFTTNKG 249 (598)
Q Consensus 187 ~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~-----------G~~GlE~~~d~~g-----~~~~~~~~~~ 249 (598)
T Consensus 80 ~~~i~~~~~pGi~~~~~~~R~YP~~~~ashviGyv~~~~~~~~~~~~~~~vG~~GlE~~yd~~L~G~~G~~~~~~d~~G 158 (165)
T pfam03717 80 AAKIKELKLPGVSIEEEPKRYYPYGELAAHVLGYVGEINEEELERLPGDRVGKSGLEKQYEKLLRGTDGKRVVEVDALG 158 (165)
T ss_pred HHHHHHCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 9999973899669987455517787530007787256760334406787527262799866240898756999999999