HHsearch results for GI: 254781103 and protein with PDBid: 1w5d_A
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=96.64 E-value=0.0011 Score=40.77 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.0
Q ss_pred EEEEECCEEEECCCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5766724035126887668862179999974288-80999999807888888874321467899999999999981
Q gi|254781103|r 516 EVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD-PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASML 590 (598)
Q Consensus 516 ~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~d-P~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~ 590 (598)
.|-+||||=. ....++||....+ ..|+++++++++.. . .-.+.++++++..|
T Consensus 407 ~v~aKTGTL~-----------~v~aLaGyv~t~~G~~~~Fsi~~N~~~~--------~----~~~r~~~d~i~~~L 459 (462)
T 1w5d_A 407 KVRAKTGSLS-----------TVSSLSGYAETKSGKKLVFSILLNGLID--------E----EDGKDIEDQIAVIL 459 (462)
T ss_dssp TEEEEEEEET-----------TEEEEEEEEECSSSCEEEEEEEEESCSS--------G----GGHHHHHHHHHHHH
T ss_pred EEEEEEEEEC-----------CCEEEEEEEECCCCCEEEEEEEECCCCC--------H----HHHHHHHHHHHHHH
T ss_conf 4999975238-----------9468589999899899999999579997--------5----77899999999998