HHsearch results for GI: 254781103 and protein with PDBid: 2iwb_A

>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=100.00  E-value=0  Score=354.61  Aligned_cols=242  Identities=12%  Similarity=0.162  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             25767777764421001132343111223023203211121001473111344432322222332456643201235654
Q gi|254781103|r  261 DLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAM  340 (598)
Q Consensus       261 D~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aa  340 (598)
                      |...|.++++.|.+....+++..|++|++|++||+|++      ||+            +|+. ..||||||||||++++
T Consensus         1 d~~~~~~~~~~~~~~~~~f~~~~G~~v~~d~~tg~~~~------~n~------------~~~~-~~y~PGStfK~~t~~a   61 (246)
T 2iwb_A            1 DKYETNVSYKKLNQLAPYFKGFDGSFVLYNEREQAYSI------YNE------------PESK-QRYSPNSTYKIYLALM   61 (246)
T ss_dssp             CBCCCCCCEEECGGGGGGGTTSEEEEEEEETTTTEEEE------ESH------------HHHT-BCBCCGGGGHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEE------ECH------------HHHC-CCCCCCCHHHHHHHHH
T ss_conf             90277774999999998717873469999789996760------588------------8966-8779963699999999


Q ss_pred             HHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf             43024032044213367632221011234543230039998550367123543202333320011012225763446865
Q gi|254781103|r  341 GIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELP  420 (598)
Q Consensus       341 aLe~g~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~it~~~al~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp  420 (598)
                      |||+|++++++.++|++.....      .+.++|.+++++||++|||++|+++++++|.+++.+++++|||+++   +++
T Consensus        62 aLe~g~~~~~~~~~~~~~~~~~------~~~~~g~~~l~~Al~~S~N~~~~~la~~lG~~~~~~~~~~~G~g~~---~~~  132 (246)
T 2iwb_A           62 AFDQNLLSLNHTEQQWDKHQYP------FKEWNQDQNLNSSMKYSVNWYYENLNKHLRQDEVKSYLDLIEYGNE---EIS  132 (246)
T ss_dssp             HHHTTSSBTTBCCBCCCCCCCS------SGGGSSCBCHHHHHHTTCHHHHHHHHTTSCHHHHHHHHHHHTCTTC---CCC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCC------CCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCC---CCC
T ss_conf             9984997885434169986617------8988997077884224562999999987286078999998289999---889


Q ss_pred             CCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             421111223355441001146875-2130010022110011078230108999863078850320189999999999999
Q gi|254781103|r  421 EIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR  499 (598)
Q Consensus       421 ~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~  499 (598)
                      ++               ..++||| +++||+|||++|++|||+|..                    +++++++.++++|+
T Consensus       133 ~~---------------~~~~~~g~~~iTPlqma~~~~~ian~g~~--------------------~~p~~~~~~~~~~~  177 (246)
T 2iwb_A          133 GN---------------ENYWNESSLKISAIEQVNLLKNMKQHNMH--------------------FDNKAIEKVENSMT  177 (246)
T ss_dssp             SC---------------SSTTSSSSCCBCHHHHHHHHHHHHTTCSS--------------------SCHHHHHHHHHHTE
T ss_pred             CC---------------CCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------------------CCCHHHHHHHHHHH
T ss_conf             87---------------64222687525699999999999838967--------------------88325567777777


Q ss_pred             HHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             87338846410479735766724035126887668862179999974288809999998078888888743214678999
Q gi|254781103|r  500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV  579 (598)
Q Consensus       500 ~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~  579 (598)
                      .+         ..+++.++|||||++.      .+...++||+||+|.+||+|+++|+|++|+      ..|+..|+||+
T Consensus       178 ~~---------~~~~~~~~~ktgTg~~------~~~~~~aWFvGf~p~~~p~~~~~v~v~~~~------~~~~~~A~pi~  236 (246)
T 2iwb_A          178 LK---------QKDTYKYVGKTGTGIV------NHKEANGWFVGYVETKDNTYYFATHLKGED------NANGEKAQQIS  236 (246)
T ss_dssp             EE---------ECSSEEEEEEEEEEEE------TTEEEEEEEEEEEEESSCEEEEEEEEECSS------CBCHHHHHHHH
T ss_pred             HH---------HHHHHHHHHCCCCCCC------CCCCCCEEEEEEEECCCCEEEEEEEEECCC------CCCCHHHHHHH
T ss_conf             76---------5423443211010446------898878899999988999599999997899------88747899999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781103|r  580 GNIIRRS  586 (598)
Q Consensus       580 ~~I~~~~  586 (598)
                      ++|++.+
T Consensus       237 ~~Il~~l  243 (246)
T 2iwb_A          237 ERILKEM  243 (246)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
T ss_conf             9999971