HHsearch results for GI: 254781103 and protein with PDBid: 3a3j_A
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}
Probab=97.70 E-value=1.1e-05 Score=53.69 Aligned_cols=109 Identities=13% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHCCCEECCCCCCCCCC
Q ss_conf 431112230232032111210014731113444323222223324566432012356544---30240320442133676
Q gi|254781103|r 282 ESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMG---IDSGLFTVKDLFDTRNP 358 (598)
Q Consensus 282 ~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaa---Le~g~i~~~~~~~~~~~ 358 (598)
.+-++++||..||+||.-- | ....++|+|+-|++|+..+ |++|.+++++.+..+..
T Consensus 8 ~A~saiv~d~~tG~iL~~k-------------------n--~~~~~~pASlTKlMTa~v~l~~i~~g~l~~~~~vtvs~~ 66 (344)
T 3a3j_A 8 TAQTYVLMDYNSGAILTAL-------------------N--PDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGES 66 (344)
T ss_dssp CSSEEEEEETTTCCEEEEE-------------------S--TTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCTT
T ss_pred CCCEEEEEECCCCCEEHEE-------------------C--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHH
T ss_conf 6139999999999690206-------------------9--098885399999999999999997499986788996499
Q ss_pred C-CC---CCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCC------CCCHHHCCCCCCCC
Q ss_conf 3-22---2101123454323003999----8550367123543202333------32001101222576
Q gi|254781103|r 359 I-KV---GKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGI------QGHKEFLYRLGLLS 413 (598)
Q Consensus 359 ~-~~---~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~------~~~~~~~~~fG~g~ 413 (598)
. .. ++..+ +-..+..+++++ .|..|.|-.++-||+.++. +.+.+.++++|+..
T Consensus 67 ~~~~~~~~~s~~--~l~~ge~~tv~dLL~~lll~S~NdAA~alAe~i~Gs~~~Fv~~MN~~A~~lG~~~ 133 (344)
T 3a3j_A 67 AWGRNFPDSSKM--FLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKN 133 (344)
T ss_dssp TCGGGCTTSCCC--CCCTTCEEEHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHCCCCCCEE--EECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 985058987325--3348976889999877765138809999998808989999999999999838853