HHsearch results for GI: 254781103 and protein with PDBid: 3cjm_A
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Enterococcus faecalis V583}
Probab=99.11 E-value=5.7e-10 Score=80.79 Aligned_cols=228 Identities=19% Similarity=0.196 Sum_probs=132.5
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CC
Q ss_conf 764421001132343111223023203211121001473111344432322222332456643201235654430---24
Q gi|254781103|r 269 HQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGID---SG 345 (598)
Q Consensus 269 e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe---~g 345 (598)
.+.|...++.+.+. -++.++|.+||++.+. |+ ...|+|+|++|.++++++|+ +|
T Consensus 38 ~~~~~a~~~~~~g~-~~v~~~dl~tg~~~~~------n~----------------~~~~~~AS~~Kl~~~~~~l~~v~~G 94 (282)
T 3cjm_A 38 NDLLVASVKEFEGT-VGISYLDLETGEQRSV------NG----------------QHEFYTASTIKVPLTMLVADTVASG 94 (282)
T ss_dssp HHHHHHHHHHCSSE-EEEEEEETTTCCEEEE------ST----------------TCCEECGGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCE-EEEEEEECCCCCEEEE------CC----------------CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999717984-9999998999988888------89----------------9842218889999999999999749
Q ss_pred CEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHH----HHHCCCCCEEEEEEECCCCC-CCHHHCCCCCCCCCCCCCC
Q ss_conf 0320442133676-3222101123454323003999----85503671235432023333-2001101222576344686
Q gi|254781103|r 346 LFTVKDLFDTRNP-IKVGKHVIHDYHPQNRILTIPE----IFRYSSNIGAAQIADAMGIQ-GHKEFLYRLGLLSKLETEL 419 (598)
Q Consensus 346 ~i~~~~~~~~~~~-~~~~~~~i~~~~~~~g~it~~~----al~~S~Nv~~~~i~~~lg~~-~~~~~~~~fG~g~~t~idl 419 (598)
.+++++.+.+... ...++..+-... .+..+++++ .+..|.|+....+++.+|.. .+...+...|+......
T Consensus 95 ~l~l~~~v~~~~~~~~~~~~~~~~~~-~g~~~sl~dLl~~mi~~SdN~Aan~L~~~lGg~~~~~~~~~~~g~~~~~~~-- 171 (282)
T 3cjm_A 95 QKKWTDLIPYNAEEDYEEGTGIIAYN-IQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDAKAKREMYQRYLHKTPSI-- 171 (282)
T ss_dssp SCCTTCEEECCHHHHCCCSSCSGGGS-CCSEEEHHHHHHHHHHTCCHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCCS--
T ss_pred CCCCCCCEEECHHHHCCCCCCCEEEC-CCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC--
T ss_conf 98877726861899615898625725-898266999999999841269999999982984999999997057668875--
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEHHHCCCCCCHHHHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54211112233554410011468752130010022110011078230108999863078850320189999999999999
Q gi|254781103|r 420 PEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLR 499 (598)
Q Consensus 420 p~e~~g~~p~~~~~~~~~~~~~Gqg~~~TPlqla~~~atiAN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~ 499 (598)
..-..||-+|+..+..+..+. ..+++... +...|.
T Consensus 172 -----------------------~~~~~T~~d~~~ll~~l~~~~---------------------~~~~~~~~-l~~~l~ 206 (282)
T 3cjm_A 172 -----------------------EEPQFSSEDALVILQKLYTEK---------------------ATKPDYQA-IYDSMK 206 (282)
T ss_dssp -----------------------SSCEECHHHHHHHHHHHHHHT---------------------TTCHHHHH-HHHHHH
T ss_pred -----------------------CCCCCCHHHHHHHHHHHHCCC---------------------CCCHHHHH-HHHHHH
T ss_conf -----------------------567778999999999997487---------------------78868999-999984
Q ss_pred HHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 87338846410479735766724035126887668862179999974288809999998078888888743214678999
Q gi|254781103|r 500 EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV 579 (598)
Q Consensus 500 ~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~ 579 (598)
...... .-.+.++...||.|||+-. .. .-.+|+.-.++| |+++|+...|.. ..+.-++
T Consensus 207 ~~~~~~-~l~~~lp~~~va~KtG~~~---------~~--~~d~giV~~~~~-yiiav~t~~~~~---------~~~~~~i 264 (282)
T 3cjm_A 207 QSVFHE-RMETPTTQGKVAHKIGSYD---------EF--IHDMGILETPHP-FALAIFTKGPDN---------AKSAAFI 264 (282)
T ss_dssp SCSCCC-TTCCTTTTTSEEEEEEEET---------TE--EEEEEEECSSSC-EEEEEEEECSCH---------HHHHHHH
T ss_pred CCCCCC-CHHCCCCCCCEEEEECCCC---------CC--EEEEEEEECCCC-EEEEEEECCCCH---------HHHHHHH
T ss_conf 477873-1102588780686202657---------70--478999957998-899999479980---------7899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254781103|r 580 GNIIRRSASM 589 (598)
Q Consensus 580 ~~I~~~~~~~ 589 (598)
++|.+.+..|
T Consensus 265 ~~is~~iy~~ 274 (282)
T 3cjm_A 265 ASVTDKLWQL 274 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999997