HHsearch results for GI: 254781103 and protein with PDBid: 3lo7_A
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=645.87 Aligned_cols=414 Identities=21% Similarity=0.269 Sum_probs=339.7
Q ss_pred CHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 53232100046651799745764870816869779999973380998999999988807999899999851367628961
Q gi|254781103|r 100 PEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLR 179 (598)
Q Consensus 100 ~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~~~~~~i~ 179 (598)
.....+|.-.......||.| +++|++||.|++. +..
T Consensus 28 ~~~~n~r~~~~~~~~~rG~I-~~~g~~la~s~~~--------------------------------------~~~----- 63 (483)
T 3lo7_A 28 ADPRNQRVLLDEYSRQRGQI-TAGGQLLAYSVAT--------------------------------------DGR----- 63 (483)
T ss_dssp ---------CCGGGSCCCCE-EETTEEEEEEEEC--------------------------------------SSS-----
T ss_pred CCCCCCHHHHHHHCCCCCCE-EECCEEEEEEEEE--------------------------------------CCC-----
T ss_conf 79987468999734768988-8599799987870--------------------------------------898-----
Q ss_pred CCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE---------EEECCCCC
Q ss_conf 379999999976310137501202333321000000111111246875123100014668516---------89536667
Q gi|254781103|r 180 RKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGLTR---------VFTTNKGE 250 (598)
Q Consensus 180 r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~g~~~---------~~~~~~~~ 250 (598)
-.++|+||++++++|||||++.+ .|.+|||++||..+.+. .......+
T Consensus 64 ----------------------~~~~R~Yp~g~~~a~v~Gy~~~~-~G~~GlE~~~~~~L~G~~~~~~~~~~~~~~~~~~ 120 (483)
T 3lo7_A 64 ----------------------FRFLRVYPNPEVYAPVTGFYSLR-YSSTALERAEDPILNGSDRRLFGRRLADFFTGRD 120 (483)
T ss_dssp ----------------------SCEEEECSSHHHHHHHHCCEETT-TEECHHHHHTHHHHHTCCTTC-------------
T ss_pred ----------------------CEEEEECCCCCCHHCEEEEECCC-CCHHHHHHHHHHHCCCCCCCEECEECCCCCCCCC
T ss_conf ----------------------46998893975230223155787-6567678987886179736420248553343589
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC---------------CC
Q ss_conf 688674255525767777764421001132343111223023203211121001473111344---------------43
Q gi|254781103|r 251 KNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG---------------KK 315 (598)
Q Consensus 251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~---------------~~ 315 (598)
.+|.+|+||||+++|++++++|.+.+ .++.+|++|+|||+||+||||||.|+||||.+... ..
T Consensus 121 ~~G~~I~tTID~~lQ~~a~~al~~~~--~~~~~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~ 198 (483)
T 3lo7_A 121 PRGGNVDTTINPRIQQAGWDAMQQGC--YGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPA 198 (483)
T ss_dssp -CCCEEEECCCHHHHHHHHHHHHHBT--TBCCCEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 99995897469999999999998635--3666279999978999299996068888210136774112799987314643
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC--CCCCCC----CCCCCCCHHHHHHCCCCCE
Q ss_conf 2322222332456643201235654430240320442133676322210--112345----4323003999855036712
Q gi|254781103|r 316 EGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKH--VIHDYH----PQNRILTIPEIFRYSSNIG 389 (598)
Q Consensus 316 ~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~--~i~~~~----~~~g~it~~~al~~S~Nv~ 389 (598)
.++.|||+++.|||||||||||+++|||+|.+.+++.++|+ .+.+.+. .+.+++ ..+|.+++++||++|||++
T Consensus 199 ~pl~Nra~~~~y~PGStfK~~t~aaaLe~G~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~Al~~S~N~~ 277 (483)
T 3lo7_A 199 SPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAP-TIPLPGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTA 277 (483)
T ss_dssp CTTSCTTTSCCBCCGGGGHHHHHHHHHHTTCCTTCEEECCS-BCCC-------BCC---CCSSSSEEEHHHHHHTTCHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHH
T ss_conf 31014044125379884899999999980985200010368-61136864211100254468987343999998604258
Q ss_pred EEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCE
Q ss_conf 3543202333320011012225763446865421111223355441001146875-213001002211001107823010
Q gi|254781103|r 390 AAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPP 468 (598)
Q Consensus 390 ~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P 468 (598)
|++++.++|.+.+.+++++|||++++..+.+.+.....+..|.....+.++|||| +.+||||||++||+|||+|.+++|
T Consensus 278 f~~l~~~~G~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANgG~~~~P 357 (483)
T 3lo7_A 278 FVQLGIRTGADALRSMARAFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRP 357 (483)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTTTEEECC
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 88999983940343357760899855677644443445653334543220110455446778877766654259833266
Q ss_pred EEEEEEECCCCC--------CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEE
Q ss_conf 899986307885--------032018999999999999987338846410479735766724035126887668862179
Q gi|254781103|r 469 TFMIRSREESEK--------VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS 540 (598)
Q Consensus 469 ~lv~~~~~~~~~--------~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~ 540 (598)
|+|+++.+.++. ..++++++++++.|+++|+.|+..+++ .+.++|++|||||||||...++.+ ...|+|
T Consensus 358 ~lV~~i~~~dg~~i~~~~~~~~~~~is~~~a~~l~~~m~~v~~~~~~-~~~~~g~~vAGKTGTaq~~~d~~~--~~~~aW 434 (483)
T 3lo7_A 358 YLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGAEKVAQQ-KGAIPGVQIASKTGTAEHGTDPRH--TPPHAW 434 (483)
T ss_dssp BSEEEEECTTCCEEEECCCCEEEECSCHHHHHHHHHHHHHHHHHSCC-TTCCTTCCCEEEEEEECCSSCTTT--SCCEEE
T ss_pred CEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEE-CCCCCCCEEEEEEECCCCCCCCCC--CCCCEE
T ss_conf 01456766987532013564332137999999999999754222002-234489779999853225768777--787289
Q ss_pred EEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999974288809999998078888888743214678999999999999
Q gi|254781103|r 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSAS 588 (598)
Q Consensus 541 FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~ 588 (598)
|+||+|+++|+|+|+|||+++.. ....+||.+|||||++||+.+|.
T Consensus 435 FvGfaP~~~P~~avaV~ve~g~~--~~~~~G~~~AaPI~~~im~~~L~ 480 (483)
T 3lo7_A 435 YIAFAPAQAPKVAVAVLVENGAD--RLSATGGALAAPIGRAVIEAALQ 480 (483)
T ss_dssp EEEEESTTSCCEEEEEEETTCCC--SSSSSSCTTHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCEEEEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99997779993999999977997--88875169999999999999976