HHsearch results for GI: 254781103 and protein with PDBid: 3lo7_A

>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=645.87  Aligned_cols=414  Identities=21%  Similarity=0.269  Sum_probs=339.7

Q ss_pred             CHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf             53232100046651799745764870816869779999973380998999999988807999899999851367628961
Q gi|254781103|r  100 PEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLR  179 (598)
Q Consensus       100 ~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~~~~~i~~~l~~~~~~~~i~  179 (598)
                      .....+|.-.......||.| +++|++||.|++.                                      +..     
T Consensus        28 ~~~~n~r~~~~~~~~~rG~I-~~~g~~la~s~~~--------------------------------------~~~-----   63 (483)
T 3lo7_A           28 ADPRNQRVLLDEYSRQRGQI-TAGGQLLAYSVAT--------------------------------------DGR-----   63 (483)
T ss_dssp             ---------CCGGGSCCCCE-EETTEEEEEEEEC--------------------------------------SSS-----
T ss_pred             CCCCCCHHHHHHHCCCCCCE-EECCEEEEEEEEE--------------------------------------CCC-----
T ss_conf             79987468999734768988-8599799987870--------------------------------------898-----


Q ss_pred             CCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE---------EEECCCCC
Q ss_conf             379999999976310137501202333321000000111111246875123100014668516---------89536667
Q gi|254781103|r  180 RKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGLTR---------VFTTNKGE  250 (598)
Q Consensus       180 r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~g~~~---------~~~~~~~~  250 (598)
                                            -.++|+||++++++|||||++.+ .|.+|||++||..+.+.         .......+
T Consensus        64 ----------------------~~~~R~Yp~g~~~a~v~Gy~~~~-~G~~GlE~~~~~~L~G~~~~~~~~~~~~~~~~~~  120 (483)
T 3lo7_A           64 ----------------------FRFLRVYPNPEVYAPVTGFYSLR-YSSTALERAEDPILNGSDRRLFGRRLADFFTGRD  120 (483)
T ss_dssp             ----------------------SCEEEECSSHHHHHHHHCCEETT-TEECHHHHHTHHHHHTCCTTC-------------
T ss_pred             ----------------------CEEEEECCCCCCHHCEEEEECCC-CCHHHHHHHHHHHCCCCCCCEECEECCCCCCCCC
T ss_conf             ----------------------46998893975230223155787-6567678987886179736420248553343589


Q ss_pred             CCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCC---------------CC
Q ss_conf             688674255525767777764421001132343111223023203211121001473111344---------------43
Q gi|254781103|r  251 KNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKG---------------KK  315 (598)
Q Consensus       251 ~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~P~~dpn~~~~~---------------~~  315 (598)
                      .+|.+|+||||+++|++++++|.+.+  .++.+|++|+|||+||+||||||.|+||||.+...               ..
T Consensus       121 ~~G~~I~tTID~~lQ~~a~~al~~~~--~~~~~gavVvmdp~TG~ILAmvs~p~ydpn~~~~~~~~~~~~~~~~l~~~~~  198 (483)
T 3lo7_A          121 PRGGNVDTTINPRIQQAGWDAMQQGC--YGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPA  198 (483)
T ss_dssp             -CCCEEEECCCHHHHHHHHHHHHHBT--TBCCCEEEEEECTTTCBEEEEEEESCCCHHHHTCSCHHHHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             99995897469999999999998635--3666279999978999299996068888210136774112799987314643


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC--CCCCCC----CCCCCCCHHHHHHCCCCCE
Q ss_conf             2322222332456643201235654430240320442133676322210--112345----4323003999855036712
Q gi|254781103|r  316 EGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKH--VIHDYH----PQNRILTIPEIFRYSSNIG  389 (598)
Q Consensus       316 ~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~~~~~~~~~--~i~~~~----~~~g~it~~~al~~S~Nv~  389 (598)
                      .++.|||+++.|||||||||||+++|||+|.+.+++.++|+ .+.+.+.  .+.+++    ..+|.+++++||++|||++
T Consensus       199 ~pl~Nra~~~~y~PGStfK~~t~aaaLe~G~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~l~~Al~~S~N~~  277 (483)
T 3lo7_A          199 SPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAP-TIPLPGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTA  277 (483)
T ss_dssp             CTTSCTTTSCCBCCGGGGHHHHHHHHHHTTCCTTCEEECCS-BCCC-------BCC---CCSSSSEEEHHHHHHTTCHHH
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHH
T ss_conf             31014044125379884899999999980985200010368-61136864211100254468987343999998604258


Q ss_pred             EEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC-CEEEHHHCCCCCCHHHHCCEECCE
Q ss_conf             3543202333320011012225763446865421111223355441001146875-213001002211001107823010
Q gi|254781103|r  390 AAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINEGRLIPP  468 (598)
Q Consensus       390 ~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p~~~~~~~~~~~~~Gqg-~~~TPlqla~~~atiAN~G~~~~P  468 (598)
                      |++++.++|.+.+.+++++|||++++..+.+.+.....+..|.....+.++|||| +.+||||||++||+|||+|.+++|
T Consensus       278 f~~l~~~~G~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siGqg~~~vTPlqma~a~aaiANgG~~~~P  357 (483)
T 3lo7_A          278 FVQLGIRTGADALRSMARAFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRP  357 (483)
T ss_dssp             HHHHHHHHCHHHHHHHHHHTTTTSCCCCSSSCCCCCBCCCCCSHHHHHHHTTTCTTCBBCHHHHHHHHHHHHTTTEEECC
T ss_pred             HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             88999983940343357760899855677644443445653334543220110455446778877766654259833266


Q ss_pred             EEEEEEECCCCC--------CCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEECCCCCCCCCCCEEE
Q ss_conf             899986307885--------032018999999999999987338846410479735766724035126887668862179
Q gi|254781103|r  469 TFMIRSREESEK--------VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS  540 (598)
Q Consensus       469 ~lv~~~~~~~~~--------~~~~vis~~~a~~l~~~l~~vv~~GTg~~a~~~g~~vaGKTGTAq~~~~g~y~~~~~~~~  540 (598)
                      |+|+++.+.++.        ..++++++++++.|+++|+.|+..+++ .+.++|++|||||||||...++.+  ...|+|
T Consensus       358 ~lV~~i~~~dg~~i~~~~~~~~~~~is~~~a~~l~~~m~~v~~~~~~-~~~~~g~~vAGKTGTaq~~~d~~~--~~~~aW  434 (483)
T 3lo7_A          358 YLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGAEKVAQQ-KGAIPGVQIASKTGTAEHGTDPRH--TPPHAW  434 (483)
T ss_dssp             BSEEEEECTTCCEEEECCCCEEEECSCHHHHHHHHHHHHHHHHHSCC-TTCCTTCCCEEEEEEECCSSCTTT--SCCEEE
T ss_pred             CEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEE-CCCCCCCEEEEEEECCCCCCCCCC--CCCCEE
T ss_conf             01456766987532013564332137999999999999754222002-234489779999853225768777--787289


Q ss_pred             EEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999974288809999998078888888743214678999999999999
Q gi|254781103|r  541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSAS  588 (598)
Q Consensus       541 FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~  588 (598)
                      |+||+|+++|+|+|+|||+++..  ....+||.+|||||++||+.+|.
T Consensus       435 FvGfaP~~~P~~avaV~ve~g~~--~~~~~G~~~AaPI~~~im~~~L~  480 (483)
T 3lo7_A          435 YIAFAPAQAPKVAVAVLVENGAD--RLSATGGALAAPIGRAVIEAALQ  480 (483)
T ss_dssp             EEEEESTTSCCEEEEEEETTCCC--SSSSSSCTTHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCEEEEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99997779993999999977997--88875169999999999999976