HHsearch results for GI: 254781103 and protein with PDBid: 3oc2_A
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=100.00 E-value=0 Score=855.99 Aligned_cols=509 Identities=29% Similarity=0.466 Sum_probs=456.9
Q ss_pred HHHHHHHHHHHHEEEEEECCHHHHCEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 99999999864313434415323210004665179974576487081686977999997338099899999998880799
Q gi|254781103|r 81 CLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNL 160 (598)
Q Consensus 81 ~~ii~~il~~rl~~lq~~~~~~~~~~~~~~~i~a~RG~I~DRNG~~LA~n~~~y~i~i~P~~i~~~~~~~~~L~~il~~~ 160 (598)
..|+|.++-+|+++...|+.++.+++++.+.++|+||.||||||++||.|.+.|+|+++|+.+.+.++.+..|+.+| ++
T Consensus 12 ~~~~~~~~~lQv~~~~~y~~~a~~~~~~~~~i~~~RG~I~DrnG~~La~n~~~~~l~~~p~~~~~~~~~~~~la~~l-~~ 90 (564)
T 3oc2_A 12 LEVLFQGPDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAAL-GQ 90 (564)
T ss_dssp -----------------------CCEEEEEEECCCCCCEECTTSCEEEEEEEEEEEEECHHHHTTCGGGHHHHHHHT-TC
T ss_pred HHHHEEHEEEEEEEHHHHHHHHHHCEEEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEHHHHCCHHHHHHHHHHHH-CC
T ss_conf 74451131179960899999997275786798379985890899998861077699998789379999999999886-88
Q ss_pred CHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 98999998513--6762896137999999997631013750120233332100000011111124687512310001466
Q gi|254781103|r 161 DSEMIRRKLSS--ETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQ 238 (598)
Q Consensus 161 ~~~~i~~~l~~--~~~~~~i~r~is~~~~~~I~~~~lpGi~~~~~~~R~YP~~~lashiiGyv~~d~~G~~GlE~~~d~~ 238 (598)
+.+++.+++++ +++|++|+++|++++.++|.++++|||.+.++++|+||++++++|++||++.|.+|++|||++||..
T Consensus 91 ~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~i~~~~l~gi~~~~~~~R~Yp~~~~~~~viG~~~~~~~G~~GlE~~y~~~ 170 (564)
T 3oc2_A 91 DTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEW 170 (564)
T ss_dssp CHHHHHHHHHTTTTCSCEEEEEEECHHHHHHHHTTCCTTEEEEEEEEEECTTGGGGHHHHCCBCTTSCBCSHHHHHTHHH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999986056784898556999999998746899579988776644788643223663445667733400121333
Q ss_pred -----CCCEEEECC-----------CCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf -----851689536-----------6676886742555257677777644210011323431112230232032111210
Q gi|254781103|r 239 -----GLTRVFTTN-----------KGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSI 302 (598)
Q Consensus 239 -----g~~~~~~~~-----------~~~~~g~dI~lTID~~lQ~~~e~~l~~~~~~~~a~~gavVvmd~~TGeILAmas~ 302 (598)
|....+... ..+++|.||+||||.++|+.+|++|.+.++..+++.|++|||||+||+||||||+
T Consensus 171 L~G~~G~~~~~~~~~~~~~~~~~~~~~~~~G~~i~lTiD~~lQ~~ae~~l~~~~~~~~~~~g~~vvmd~~TG~ILAm~s~ 250 (564)
T 3oc2_A 171 LAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQ 250 (564)
T ss_dssp HHCBCEEEEEEECTTCCEEEESSCCBCCBCCCCEEBSCCHHHHHHHHHHHHHHHHHHTCCCEEEEEEETTTCBEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCC
T ss_conf 05887818999825875211233345688997079996199986589999988863177502699972688838872378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 014731113444323222223324566432012356544302403204421336-7632221011234543230039998
Q gi|254781103|r 303 PDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTR-NPIKVGKHVIHDYHPQNRILTIPEI 381 (598)
Q Consensus 303 P~~dpn~~~~~~~~~~~Nra~~~~yePGStfKp~t~aaaLe~g~i~~~~~~~~~-~~~~~~~~~i~~~~~~~g~it~~~a 381 (598)
|+||||++.......+.||++++.||||||||||++++|||+|++++++.++|. +.+..+....++++..+|.+++++|
T Consensus 251 P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~a 330 (564)
T 3oc2_A 251 PTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGI 330 (564)
T ss_dssp SCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHHTTSCCTTCEEECTTSEEEETTEEEECSCCCCSEEEHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCCEEECCCCCCCCHHHHHH
T ss_conf 98664321246846777577618678863577899999997797256426752786253587102013234552021110
Q ss_pred HHCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCEEEHHHCCCCCCHH
Q ss_conf 55036712354320233332001101222576344686542111122--3355441001146875213001002211001
Q gi|254781103|r 382 FRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYP--SQWKRIHSLTISFGHGLSTTPLQTAVAAAAL 459 (598)
Q Consensus 382 l~~S~Nv~~~~i~~~lg~~~~~~~~~~fG~g~~t~idlp~e~~g~~p--~~~~~~~~~~~~~Gqg~~~TPlqla~~~ati 459 (598)
|++|||++|+++++++|.+.+.+++++|||++++++|+|++..+..| ..|.....+++++|||+.+||||||++|++|
T Consensus 331 l~~S~Nv~f~~l~~~lg~~~~~~~~~~fG~g~~~~id~p~~~~~~~~~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~i 410 (564)
T 3oc2_A 331 LIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAAL 410 (564)
T ss_dssp HHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTSCCCCSCTTCCCCBCCCCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 12166719999999875899999999779987779997422157777644322332002213887346799999988762
Q ss_pred HHCCEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCEEEEEECCEEEECCCC--CCCCCC
Q ss_conf 10782301089998630788503201899999999999998733-884641047973576672403512688--766886
Q gi|254781103|r 460 INEGRLIPPTFMIRSREESEKVSRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQKVIKK--RYSDTL 536 (598)
Q Consensus 460 AN~G~~~~P~lv~~~~~~~~~~~~~vis~~~a~~l~~~l~~vv~-~GTg~~a~~~g~~vaGKTGTAq~~~~g--~y~~~~ 536 (598)
||+|.+++|++++...+.. ..+++|+++++.+++||+.||+ .||+.++.++||+|||||||||+...+ +|.++.
T Consensus 411 AN~G~~~~p~~~~~~~~~~---~~~vis~~~a~~v~~~l~~Vv~~~gt~~~a~~~g~~iAGKTGTAq~~~~~~~~~~~~~ 487 (564)
T 3oc2_A 411 ANDGKSVPLSMTRVDRVPD---GVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENA 487 (564)
T ss_dssp HTTTEECCCBSBCCSSCCC---CEECSCHHHHHHHHHHHHHHHHSTTSCGGGCCTTSCCEEEEEEEEC-----------C
T ss_pred CCCCEEEECEEEEEECCCC---CCCCCCHHHHHHHHHHHHHEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 2798796035787403664---3356898999999999974697899888642799679998623611558887622688
Q ss_pred CEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 217999997428880999999807888888874321467899999999999981899855
Q gi|254781103|r 537 NFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596 (598)
Q Consensus 537 ~~~~FvG~~P~~dP~~~v~V~v~~p~~~~~~~~~Gg~~AaPi~~~I~~~~~~~~~i~P~~ 596 (598)
+++||+||+|++||+|+|+|||++|+.. +.+||.+|||||++||++++++++|+|+.
T Consensus 488 ~~awFvGy~P~~~P~~av~V~v~~~~~~---g~~Gg~~AaPi~~~im~~~l~~~~v~p~~ 544 (564)
T 3oc2_A 488 YRSLFAGFAPATDPRIAMVVVIDEPSKA---GYFGGLVSAPVFSKVMAGALRLMNVPPDN 544 (564)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEEC--------CHHHHTHHHHHHHHHHHHHHTTCCCCC
T ss_pred CEEEEEEEEECCCCEEEEEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6699999987799859999999028988---87655999999999999999766989876