PSIBLAST alignment of GI: 254781103 and protein with PDB id: 1pmd
>gi|157833527|pdb|1PMD|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Length = 675
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 100/548 (18%), Positives = 204/548 (37%), Gaps = 77/548 (14%)
Query: 116 RPDIIDRNGEILATDIPTFSLYVE--------PHKVISPDEI-IEKLQIVLP---NLDSE 163
R I DRNG +A D ++++Y K++ ++ K+ V +++
Sbjct: 1 RGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVFHKYLDMEES 60
Query: 164 MIRRKLS----SETKFQWLRRKLSP----QQQKRILSFGLPGVGFRLEKSRFYPAASHAS 215
+R +LS + F ++ +K + + + G+ F +R YP AS
Sbjct: 61 YVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDFTTSPNRSYPNGQFAS 120
Query: 216 HVVGYVDIDNR--------GITGIEKFLD-----MQGLTRVFTTNKGEK----------- 251
+G + G +G+E L+ G+ G
Sbjct: 121 SFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDRLGNIVPGTEQVSQRT 180
Query: 252 -NLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEA 310
+ + + + +Q+ + ++ ++K + + +++ TGE+++ P +D
Sbjct: 181 MDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTK 240
Query: 311 FKGKKEG-WFNRISYGIFEMGSIFKVFTIAMGIDSGLFT----VKDLFDTRNPIKVGKHV 365
++ W + + +E GS KV +A ID+ F +
Sbjct: 241 EGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWD 300
Query: 366 IHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAP 425
+++ R++T + F +SSN+G + MG ++L R L + A
Sbjct: 301 VNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAG 360
Query: 426 SYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRI- 484
++ SFG G+S T Q A A+ N+G ++ P F+ + +++ +R
Sbjct: 361 -QLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKS 419
Query: 485 -------VLKKNTVKTMRSLLREGVTG---GSGRR-------AFVPGFEVGGKTGTAQKV 527
+ K+ R+ + T G+ VPG V K+GTAQ
Sbjct: 420 QKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIA 479
Query: 528 I--KKRYSDTLNFNSF--LAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMV--GN 581
Y L F +++ P +P +I+ + P+ QL G P++ +
Sbjct: 480 DEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL--GEFANPILERAS 537
Query: 582 IIRRSASM 589
++ S ++
Sbjct: 538 AMKDSLNL 545