PSIBLAST alignment of GI: 254781103 and protein with PDB id: 2waf
>gi|224036199|pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus Pneumoniae (Strain R6) Length = 682
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 81/399 (20%), Positives = 137/399 (34%), Gaps = 59/399 (14%)
Query: 232 EKFLDMQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKY-------NAESV 284
E LD G T + I+L +DL Q+ V L +E V
Sbjct: 284 EIHLDKYGNMESVDTIEEGSKGNNIKLTIDLAFQDSVDALLKSYFNSELENGGAKYSEGV 343
Query: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344
V LN TG V+SM I H+ G+ +F GS+ K TI+ G ++
Sbjct: 344 YAVALNPKTGAVLSMSGIK----HDLKTGELTPDSLGTVTNVFVPGSVVKAATISSGWEN 399
Query: 345 GLFTVKDLFDTRNPIKVGKHVIHDYHPQNR---ILTIPEIFRYSSNIGAAQI-------- 393
G+ + ++ + G I+ ++ Q +T + YSSN Q
Sbjct: 400 GVLSGNQTLTDQSIVFQGSAPINSWYTQAYGSFPITAVQALEYSSNTYMVQTALGLMGQT 459
Query: 394 ----------ADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGH 443
++ + GL + +LP+ P ++ + +T +FG
Sbjct: 460 YQPNMFVGTSNLESAMEKLRSTFGEYGLGTATGIDLPDESTGFVPKEYSFANYITNAFGQ 519
Query: 444 GLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVS--------------RIVLKKN 489
+ TP+Q A A + N G + P + ++K ++ + +
Sbjct: 520 FDNYTPMQLAQYVATIANNGVRVAPRIVEGIYGNNDKGGLGDLIQQLQPTEMNKVNISDS 579
Query: 490 TVKTMRSLLREGVTGGSG---RRAFVPG--FEVGGKTGTAQKVIKKRYSDTLNFNSFLAV 544
+ + + G SG RAF G + GKTGTA+ + T +A
Sbjct: 580 DMSILHQGFYQVAHGTSGLTTGRAFSNGALVSISGKTGTAESYVADGQQATNTNA--VAY 637
Query: 545 FPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNII 583
P+ +PQ V P + +II
Sbjct: 638 APSDNPQIAVAVVF--PHNTNLTNGVGPS----IARDII 670