RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (598 letters) >gnl|CDD|31111 COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]. Length = 599 Score = 365 bits (937), Expect = e-101 Identities = 175/600 (29%), Positives = 275/600 (45%), Gaps = 70/600 (11%) Query: 59 FQKRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPD 118 +K R + + + ++ L+I + ++I+Q + E + R D Sbjct: 7 KKKGRLFRRRLNLLFLIIFLLFALLILRLFYLQIVQGDDYAKEAANRNQRTVPIPAPRGD 66 Query: 119 IIDRNGEILATDIPTFSLYVEPHKV------ISPDEIIEKLQIVLPNLDSEMIRRKLSSE 172 I DRNG++LAT++P +SL +P K+ + DE+ KL +L +LD + ++L S+ Sbjct: 67 IYDRNGKVLATNVPVYSLTADPRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSK 126 Query: 173 TK-FQWLRRK--LSPQQQKRI--LSFGLPGVGFRLEKSRFYP---AASHASHVVGYVDID 224 ++ F L RK L+P+Q RI L LPGV + R+YP ASH + VG ++ D Sbjct: 127 SRLFTPLARKTNLTPEQAARIAELLLKLPGVDVETDSRRYYPYGELASHVAGYVGKINED 186 Query: 225 NR--------GITGIEKFLDMQ-----GLTRVFTTNKGE----------KNLQPIRLALD 261 G +G+EK D G V +G K+ + ++L +D Sbjct: 187 ELGRLKNEDIGKSGLEKSYDDVLRGKDGYREVEVDRRGNVIPTLKEVKPKDGKDVQLTID 246 Query: 262 LRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDP-----HEAFKGKKE 316 LR+Q + L + A+ V+L+ TGE+++M S P YDP + + ++ Sbjct: 247 LRLQKAAEEAL-DKAVANKAKGGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRK 305 Query: 317 GWFNRISYGIFEMGSIFKVFTIAMGIDSG---LFTVKDLFDTRNP-IKVGKHVIHDYHPQ 372 NR G +E GS FK T A +++G LF + D P I++ HDY Sbjct: 306 PLLNRAVTGTYEPGSTFKPITAAAALETGNTGLFDPGSVLDGNGPKIRIWGRTGHDYGG- 364 Query: 373 NRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPS--- 429 R LT+ E + SSN+G A++A +G G ++L + G K +LP + PS Sbjct: 365 -RPLTLTEALQKSSNVGFAKLALRLGPDGLYDYLKKFGFGQKTGIDLPGETSGLLPSREP 423 Query: 430 -QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSRE-------ESEKV 481 +W I T+S G GL TPLQ A A A + N G+L+ P + + E + Sbjct: 424 WRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVL 483 Query: 482 SRIVLKKNTVKTMRSLLR---EGVTGGSGRRAFVPGFEVGGKTGTAQKVIKK--RYSDTL 536 + V+ T + +R +R GG+G+ A VPG+ + GKTGTAQK YS Sbjct: 484 KKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGR 543 Query: 537 NFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVF 596 F+ P +P+Y V +D+P G AP+ I+ R L VKP Sbjct: 544 YHAWFVGFAPADNPKYAVAVLVDNPGGG-----YGGAVAAPVFKKIMERLLDYLNVKPDA 598 >gnl|CDD|144486 pfam00905, Transpeptidase, Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family. Length = 296 Score = 188 bits (480), Expect = 3e-48 Identities = 93/303 (30%), Positives = 150/303 (49%), Gaps = 13/303 (4%) Query: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344 V+L+ TGEV++M P YDP KE NR ++E GS FK+FT +D+ Sbjct: 2 SAVVLDPKTGEVLAMAGKPSYDP----NRDKEPLRNRAVQDVYEPGSTFKIFTALAALDN 57 Query: 345 GLFTVKDLFDTRNPIKVGKHVIHDYH-PQNRILTIPEIFRYSSNIGAAQIADAMGIQGHK 403 G+ ++ FD + VG + I D++ + +T+ E YSSN Q+A +G + Sbjct: 58 GILKPEETFDDWPGLPVGGYTIKDWNQDGSGTITLREALEYSSNWYFQQLALKLGKDKLR 117 Query: 404 EFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHG-LSTTPLQTAVAAAALINE 462 ++L + G +K LP ++ R T ++G G L+ TPLQ A A A + N Sbjct: 118 DYLKKFGYGNKTGIGLPG-ESAGILPPRYRGDGATTAWGQGSLTITPLQQAQAYATIANN 176 Query: 463 GRLIPPTFM--IRSREESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGK 520 G+L+PP + I+ + + + ++ + K+T + ++ +L+ V G A VPG++V GK Sbjct: 177 GKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLK-LVVNDGGGAAAVPGYKVAGK 235 Query: 521 TGTAQKVIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVG 580 TGTAQ K Y D F+ P +P+Y +D PK G AP+ Sbjct: 236 TGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDPKGDGG---AGGKVAAPIFK 292 Query: 581 NII 583 +I+ Sbjct: 293 DIL 295 >gnl|CDD|146381 pfam03717, PBP_dimer, Penicillin-binding Protein dimerization domain. This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerisation. The domain forms a largely disordered 'sugar tongs' structure. Length = 165 Score = 105 bits (263), Expect = 5e-23 Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 17/137 (12%) Query: 116 RPDIIDRNGEILATDIPTFSLYVEPHKVISP-DEIIEKLQIVLPNLDSEMIRRKLS---- 170 R +I+DRNG +LAT++P +S+YV+P +V E EKL +L LD E I +KL Sbjct: 5 RGEILDRNGRVLATNVPVYSVYVDPKEVEDELKETAEKLAKIL-GLDPEEILKKLKEKDA 63 Query: 171 SETKFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNR---- 226 + L R LSP++ +I LPGV E R+YP A+HV+GYV N Sbjct: 64 KSYEPVVLARNLSPEEAAKIKELKLPGVSIEEEPKRYYPYGELAAHVLGYVGEINEEELE 123 Query: 227 -------GITGIEKFLD 236 G +G+EK + Sbjct: 124 RLPGDRVGKSGLEKQYE 140 >gnl|CDD|31087 COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]. Length = 661 Score = 93.6 bits (232), Expect = 1e-19 Identities = 67/287 (23%), Positives = 108/287 (37%), Gaps = 51/287 (17%) Query: 256 IRLALDLRIQNIVHQELVEN-KKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGK 314 + LD +Q + + + K V+++ TG V ++V DY P Sbjct: 299 VYTTLDPELQEAAEKAVQADPLYKLRDVQAALVLIDPKTGAVRALVGGRDYQPSG----- 353 Query: 315 KEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQN- 373 FNR + + GS FK F ++ G T + P+ G ++ P+N Sbjct: 354 ----FNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDA-PVTYG-----NWSPKNY 403 Query: 374 ------RILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSY 427 +T+ E S NI A ++ +G+ + +LG+ S L Sbjct: 404 DGRYEGGSVTLREALATSLNIPAVRLLQKVGLDKVVDTAKKLGINSPLVP---------- 453 Query: 428 PSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKV------ 481 +++ G +PL+ A A A N G PP F IR +++ V Sbjct: 454 --------GPSLALG-ASEVSPLEMASAYATFANGGTYYPPHF-IRKVTDADGVLYDNPP 503 Query: 482 -SRIVLKKNTVKTMRSLLREGVT-GGSGRRAFVPGFEVGGKTGTAQK 526 + VL M +L+ VT G+G A +PG GKTGT Sbjct: 504 KVKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKLPGPYAAGKTGTTND 550 >gnl|CDD|34614 COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]. Length = 797 Score = 67.6 bits (165), Expect = 1e-11 Identities = 64/274 (23%), Positives = 105/274 (38%), Gaps = 63/274 (22%) Query: 287 VILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGL 346 V L+ TG ++++V + + FNR + + + GS FK F + +D G Sbjct: 424 VSLDPKTGAILALVGGFSFAQSK---------FNRATQALRQPGSSFKPFVYSAALDKG- 473 Query: 347 FTVKDLFDTRNPIKVGKHVIHDYHPQNR------ILTIPEIFRYSSNIGAAQIADAMGIQ 400 T + + + P+N +T+ + S N+ A ++ DA+G+ Sbjct: 474 LTPASVINDAPISFWDGGGGGVWRPKNYGGKFAGPITLRQGLEQSRNLVAVRLLDAVGVD 533 Query: 401 GHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALI 460 E++ R G + ELP L+++ G G TTPLQ A A A Sbjct: 534 YAAEYIKRFGFYTD---ELP--------------PVLSMALGSG-ETTPLQMARAYAVFA 575 Query: 461 NEGRLIPPTFMIR--------------------------SREESEKVSRI--VLKKNTVK 492 N G+ + P F+ R ++EE V+ T Sbjct: 576 NGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVIDPMTAY 635 Query: 493 TMRSLLREGVTGGSGRRAFVPG-FEVGGKTGTAQ 525 + S+LR V G+ RA G ++ GKTGT Sbjct: 636 QITSMLRGVVQRGTAARAGRLGRPDIAGKTGTTN 669 >gnl|CDD|34561 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]. Length = 733 Score = 51.1 bits (122), Expect = 9e-07 Identities = 71/343 (20%), Positives = 121/343 (35%), Gaps = 55/343 (16%) Query: 256 IRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPHEAFKGKK 315 + L R++ + S ++++ T EV++ V D+ F + Sbjct: 271 LDANLQRRLEEQARDYASRLGPR---NSAAVLVVDNRTMEVLAYVGSADF-----FDASR 322 Query: 316 EGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNR- 374 G + + + GS K F + D GL + L P + G DY P+N Sbjct: 323 SGHID-MVRALRSPGSTLKPFVYGLAFDQGLIHPETLLKDV-PTRFG-----DYRPENFD 375 Query: 375 -----ILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPS 429 +++ E S NI A ++ +A+G L + G+ LPE AP Sbjct: 376 SNFHGPVSVREALIKSLNIPAVRLLEAVGPPRFAARLRQAGVHLY----LPEGAAP---- 427 Query: 430 QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKN 489 L++ G G T A AAL N+G+ P + +E+ +L Sbjct: 428 ------GLSLILG-GAGITLEDLAQLYAALANQGKAGPLRDTLDDDPLTERT---LLSPG 477 Query: 490 TVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD 549 + +L + G A + KTGT+ Y D + F Sbjct: 478 AAWQILDILSDVARPGLPNGALPSVRPIAWKTGTSYG-----YRDAWSVGVF-------- 524 Query: 550 PQYIVLSFMDSPKIKERNQLTAGINVAPM---VGNIIRRSASM 589 +Y++ ++ L+ AP+ V NII RS + Sbjct: 525 GRYVLGVWVGRFDGTPVPGLSGVATAAPLLFQVNNIIARSGRL 567 >gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid transport and metabolism]. Length = 364 Score = 31.5 bits (71), Expect = 0.73 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 126 ILATDIPTFSLYVEPHK-VISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLR 179 P SL EP ++S DE + L LD + R + ++ + LR Sbjct: 239 ESMDSFPVESLIPEPLPSLMSADEFLHGL----VKLDQNIEERVKEASSEGKVLR 289 >gnl|CDD|73263 cd01379, MYSc_type_III, Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.. Length = 653 Score = 31.1 bits (70), Expect = 0.83 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 59 FQKRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPD 118 F K + + I IG T +Y ILA I+ G+I +A D+ +S Sbjct: 234 FYKDQFEQIEQCFRVIGFTDEEVGSVYRILA-AILNLGDIEFGSVASEHQTDKSRVSNVA 292 Query: 119 IIDRNGEILATDIPTFSLYVEPHKVISPDEII 150 ++ +L + H V++ E I Sbjct: 293 ALENAASLLCIRSDELQEALTSHCVVTRGETI 324 >gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity.. Length = 279 Score = 29.9 bits (68), Expect = 2.0 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%) Query: 372 QNRILTIPEI--FRYSSNIGAAQIADAMGIQG 401 Q +IL +PE FR + + I D MGI G Sbjct: 213 QGKILPVPETVPFRLTRD-----IVDGMGITG 239 >gnl|CDD|144524 pfam00957, Synaptobrevin, Synaptobrevin. Length = 89 Score = 29.8 bits (68), Expect = 2.2 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Query: 44 NLCQKGCHMEDGQDLFQKRRRKV-----IAHSKNRIGMTIVVCLVIYIILAI 90 L K +++ F+K+ RK+ + K +I + ++V ++I II+ + Sbjct: 35 ELVDKTENLQSQAQQFRKQARKLKRKMWWKNMKLKIILGLIVLILILIIIIV 86 >gnl|CDD|143914 pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. Length = 327 Score = 29.0 bits (65), Expect = 3.9 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 326 IFEMGSIFKVFT---IAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRILTIPEIF 382 +F + S+ K FT + ++ G + D V K++ +T+ ++ Sbjct: 49 LFRIASVTKTFTAAAVLALVERGKLDLDD--------PVSKYLPEFAGSGKGGVTLRDLL 100 Query: 383 RYSS 386 ++S Sbjct: 101 THTS 104 >gnl|CDD|48199 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.. Length = 415 Score = 29.1 bits (65), Expect = 4.0 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 160 LDSEMIRRKLSSETKFQWLRRKLSPQQQKRILSFGLPGVGFRLE--KSRFYPAASHASHV 217 L +M +L S F+++ L+P++ IL G PG R + YPA + ++ Sbjct: 133 LLVDMTPEELVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGW 192 Query: 218 VGYVD 222 +GY D Sbjct: 193 LGYSD 197 >gnl|CDD|176331 cd01255, PH_TIAM, TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain. Length = 160 Score = 28.7 bits (64), Expect = 4.2 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 19/107 (17%) Query: 405 FLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGR 464 +Y+ L K + +L + + ++ F + T LQ ++AA + Sbjct: 62 LVYKERL--KQKKKLMGVSRKNATNEVD-----PFRFRVLIPVTALQVRASSAADMESNF 114 Query: 465 LIPPTFMIRSREESEKVSRIVL---------KKNTVKTMRSLLREGV 502 L +I + E E V + +KT+RS+LRE V Sbjct: 115 LWE---LIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 >gnl|CDD|30914 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]. Length = 342 Score = 28.8 bits (64), Expect = 4.8 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 21/104 (20%) Query: 100 PEPIAPSMN-----IDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQ 154 PE IA + + E + I + I + ++E K +SP++ +E Sbjct: 208 PEEIAEELGVSPDKVREMLKRASEPISLDTPIGDDEDSELGDFLEDDKSVSPEDAVE--- 264 Query: 155 IVLPNLDSEMIRRKLSSETKFQWLRRKLSPQQQKRI-LSFGLPG 197 R+ E + L L+ ++++ I L FGL Sbjct: 265 ------------RESLKEDLNEVLAEALTERERRVIRLRFGLDD 296 >gnl|CDD|38006 KOG2795, KOG2795, KOG2795, Catalytic subunit of the meiotic double strand break transesterase [Replication, recombination and repair]. Length = 372 Score = 28.7 bits (64), Expect = 5.0 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 3/101 (2%) Query: 179 RRKLSPQQQKRILSFGLPGVGF-RLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDM 237 + L +Q + S L V R+E A + + NR + D+ Sbjct: 4 AQGLGGRQSLTLNSNDLSAVVLARIEDFVLSVLVQLARPEGFSLSVINRKRSNSLSSPDL 63 Query: 238 QGLTRV--FTTNKGEKNLQPIRLALDLRIQNIVHQELVENK 276 L T + + + A+ LR+ IVH+ L K Sbjct: 64 DTLVSKSHNTLRFTFSSKKAKKFAILLRVLEIVHELLELGK 104 >gnl|CDD|30609 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]. Length = 485 Score = 27.9 bits (62), Expect = 7.9 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 18/78 (23%) Query: 526 KVIKKRYSDTLNFNSFLAVF--PTTDPQYIVLSFMDSPKIKERNQL--------TAGINV 575 +V+ ++ + L + LAV P+ IVL + K K+ L + GI++ Sbjct: 205 EVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAKKPIALVGKGITFDSGGISI 264 Query: 576 APMVGNIIRRSASMLGVK 593 P +A M +K Sbjct: 265 KP--------AAGMDTMK 274 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0813 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,391,283 Number of extensions: 409013 Number of successful extensions: 1004 Number of sequences better than 10.0: 1 Number of HSP's gapped: 982 Number of HSP's successfully gapped: 26 Length of query: 598 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 499 Effective length of database: 4,124,446 Effective search space: 2058098554 Effective search space used: 2058098554 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (26.7 bits)