RPSBLAST alignment of GI: 254781103 and protein with PDBid: 1vqq

>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A* Length = 646
 Score =  180 bits (456), Expect = 1e-45
 Identities = 81/523 (15%), Positives = 179/523 (34%), Gaps = 51/523 (9%)

Query: 115 SRPDIIDRNGEILATDIPTFSLYVEPHKVISPD-EIIEKLQIVLPNLDSEMIRRKLSSET 173
            R  I+DRN   LA     + + + P  V   D + I K   +  +   + + +    + 
Sbjct: 128 ERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDD 187

Query: 174 KFQWLRRKLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYV------DIDNRG 227
            F  L+      +     +     +     +SR YP     SH++GYV      ++  + 
Sbjct: 188 TFVPLKTVKKMDEYLSDFA-KKFHLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKE 246

Query: 228 ITGIEKFLDMQGLTRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESV--- 284
             G +    +         +K  ++    R+ +     N +   L+E KKK   +     
Sbjct: 247 YKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLTI 306

Query: 285 -----------------GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISY--- 324
                                ++  TGE++++VS P YD +    G     +N+++    
Sbjct: 307 DAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKK 366

Query: 325 --------GIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPI-----KVGKHVIHDYHP 371
                        GS  K+ T  +G+++     K  +             G + +  Y  
Sbjct: 367 EPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEV 426

Query: 372 QNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQW 431
            N  + + +    S NI  A++A  +G +  ++ + +LG+   + ++ P   A       
Sbjct: 427 VNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPFYNAQISNKNL 486

Query: 432 KRIHSLTISF--GHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEKVSRIVLKKN 489
                L  S      +   P+Q     +AL N G +  P  +  ++ +  K  + ++ K 
Sbjct: 487 DNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWK--KNIISKE 544

Query: 490 TVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNSFLAVFPTTD 549
            +  +   +++ V        +     + GK+GTA+  +K+  +       +   +   +
Sbjct: 545 NINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETG--RQIGWFISYDKDN 602

Query: 550 PQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGV 592
           P  ++   +   + K             +   +         +
Sbjct: 603 PNMMMAINVKDVQDKGMAS-YNAKISGKVYDELYENGNKKYDI 644