RPSBLAST alignment of GI: 254781103 and protein with PDBid: 2wad
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A Length = 680
Score = 109 bits (271), Expect = 2e-24
Identities = 89/565 (15%), Positives = 173/565 (30%), Gaps = 101/565 (17%)
Query: 88 LAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLYVEPHKVISPD 147
+A +++ Y +I + D Y P+I + E L ++ S + +
Sbjct: 96 IAKKLLTYVSISSPNLTERQLADYYLAD-PEIYKKTVEALPSEKRLDSDGNRLSESELYN 154
Query: 148 EIIEKLQIVLPNLDSE-----MIRRKLSSETKFQW---LRRKLSPQQQKRI--LSFGLPG 197
++ + N + + +L++ F L+ Q I +S +PG
Sbjct: 155 NAVDSVPTSQLNYTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPG 214
Query: 198 VGFRLEKSRFYPAASHASHV--------------------VGYVDIDNRGITGIEKFLDM 237
+ R S +S V GY D G + +EK +
Sbjct: 215 ISISTSWDRKILETSLSSIVGSVSSEKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEE 274
Query: 238 QGLT---------------RVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAE 282
+ + I+L +DL Q+ V L
Sbjct: 275 VLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSYFNSELGN 334
Query: 283 SVGTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGW--------FNRISYGIFEMGSIFK 334
+ V ++ P + G K +F GS+ K
Sbjct: 335 GG-----AKYSEGVYAVALNPQTGAVLSMSGLKHDLKTGELTPDSLGTVTNVFVPGSVVK 389
Query: 335 VFTIAMGIDSGLFTVKDLFDTRNPIKVGKHVIHDYHPQNRIL---TIPEIFRYSSNIGAA 391
TI+ G ++G+ + + + G I+ ++ T E YSSN
Sbjct: 390 AATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSWYKLAYGSFPITAVEALEYSSNAYVV 449
Query: 392 QIAD------------------AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKR 433
Q A + + GL S +LP+ P ++
Sbjct: 450 QTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDLPDESTGLVPKEYNF 509
Query: 434 IHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIR--------------SREESE 479
+ +T +FG + TP+Q A A + N G + P + +++
Sbjct: 510 ANFITNAFGQFDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTK 569
Query: 480 KVSRIVLKKNTVKTMRSLLREGVTG----GSGRRAF-VPGFEVGGKTGTAQKVIKKRYSD 534
+++++ + ++ + + + G +GR + GKTGT + +
Sbjct: 570 EINKVNISESDMAILHQGFYQVSHGTSPLTTGRAFSDGATVSISGKTGTGESYVAGGQEA 629
Query: 535 TLNFNSFLAVFPTTDPQYIVLSFMD 559
+ +A PT +PQ V
Sbjct: 630 --TNTNAVAYAPTENPQIAVAVVFP 652