RPSBLAST alignment of GI: 254781103 and protein with PDBid: 3lo7

>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Length = 483
 Score =  195 bits (496), Expect = 2e-50
 Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 48/419 (11%)

Query: 206 RFYPAASHASHVVGYVDIDNRGITGIEKFLD--MQG--------LTRVFTTNKGEKNLQP 255
           R YP     + V G+  +     T +E+  D  + G            F T +  +    
Sbjct: 68  RVYPNPEVYAPVTGFYSLRY-SSTALERAEDPILNGSDRRLFGRRLADFFTGRDPRGGN- 125

Query: 256 IRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPH------- 308
           +   ++ RIQ      +   +  Y       V L  STG+++++VS P YDP+       
Sbjct: 126 VDTTINPRIQQAGWDAM--QQGCYGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNP 183

Query: 309 --------EAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360
                              NR     +  GS FKV T A  + +G    + L        
Sbjct: 184 EVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAPTIPL 243

Query: 361 VGKHVIHDYHPQNRI-----LTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKL 415
            G     + +          +++ E F  S N    Q+    G    +      GL S  
Sbjct: 244 PGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMARAFGLDSPP 303

Query: 416 ETELPEIQAPSYPS-QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRS 474
                ++   +           +T      ++ TPL  A  AA + N G  + P  +   
Sbjct: 304 RPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRPYLVGSL 363

Query: 475 R--------EESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQK 526
           +               R  +       +  L+  G    + ++  +PG ++  KTGTA+ 
Sbjct: 364 KGPDLANISTTVGYQQRRAVSPQVAAKLTELMV-GAEKVAQQKGAIPGVQIASKTGTAEH 422

Query: 527 VIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRR 585
               R++       ++A  P   P+  V   +++    +R   T G   AP+   +I  
Sbjct: 423 GTDPRHTP--PHAWYIAFAPAQAPKVAVAVLVENG--ADRLSATGGALAAPIGRAVIEA 477