RPSBLAST alignment of GI: 254781103 and protein with PDBid: 3lo7
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell membrane, cell shape, cell WALL biogenesis/degradation, membrane; 2.05A {Mycobacterium tuberculosis} Length = 483
Score = 195 bits (496), Expect = 2e-50
Identities = 78/419 (18%), Positives = 139/419 (33%), Gaps = 48/419 (11%)
Query: 206 RFYPAASHASHVVGYVDIDNRGITGIEKFLD--MQG--------LTRVFTTNKGEKNLQP 255
R YP + V G+ + T +E+ D + G F T + +
Sbjct: 68 RVYPNPEVYAPVTGFYSLRY-SSTALERAEDPILNGSDRRLFGRRLADFFTGRDPRGGN- 125
Query: 256 IRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMVSIPDYDPH------- 308
+ ++ RIQ + + Y V L STG+++++VS P YDP+
Sbjct: 126 VDTTINPRIQQAGWDAM--QQGCYGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNP 183
Query: 309 --------EAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360
NR + GS FKV T A + +G + L
Sbjct: 184 EVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAPTIPL 243
Query: 361 VGKHVIHDYHPQNRI-----LTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKL 415
G + + +++ E F S N Q+ G + GL S
Sbjct: 244 PGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMARAFGLDSPP 303
Query: 416 ETELPEIQAPSYPS-QWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRS 474
++ + +T ++ TPL A AA + N G + P +
Sbjct: 304 RPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRPYLVGSL 363
Query: 475 R--------EESEKVSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQK 526
+ R + + L+ G + ++ +PG ++ KTGTA+
Sbjct: 364 KGPDLANISTTVGYQQRRAVSPQVAAKLTELMV-GAEKVAQQKGAIPGVQIASKTGTAEH 422
Query: 527 VIKKRYSDTLNFNSFLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRR 585
R++ ++A P P+ V +++ +R T G AP+ +I
Sbjct: 423 GTDPRHTP--PHAWYIAFAPAQAPKVAVAVLVENG--ADRLSATGGALAAPIGRAVIEA 477