BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781103|ref|YP_003065516.1| penicillin-binding
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
(598 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/598 (100%), Positives = 598/598 (100%)
Query: 1 MIFPFITVSQFRMFFSMGILHNHNMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQ 60
MIFPFITVSQFRMFFSMGILHNHNMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQ
Sbjct: 1 MIFPFITVSQFRMFFSMGILHNHNMNMSHNSANISFRNMESGHNLCQKGCHMEDGQDLFQ 60
Query: 61 KRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDII 120
KRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDII
Sbjct: 61 KRRRKVIAHSKNRIGMTIVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDII 120
Query: 121 DRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRR 180
DRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRR
Sbjct: 121 DRNGEILATDIPTFSLYVEPHKVISPDEIIEKLQIVLPNLDSEMIRRKLSSETKFQWLRR 180
Query: 181 KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGL 240
KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGL
Sbjct: 181 KLSPQQQKRILSFGLPGVGFRLEKSRFYPAASHASHVVGYVDIDNRGITGIEKFLDMQGL 240
Query: 241 TRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMV 300
TRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMV
Sbjct: 241 TRVFTTNKGEKNLQPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISMV 300
Query: 301 SIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360
SIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK
Sbjct: 301 SIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDSGLFTVKDLFDTRNPIK 360
Query: 361 VGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELP 420
VGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELP
Sbjct: 361 VGKHVIHDYHPQNRILTIPEIFRYSSNIGAAQIADAMGIQGHKEFLYRLGLLSKLETELP 420
Query: 421 EIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEK 480
EIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEK
Sbjct: 421 EIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVAAAALINEGRLIPPTFMIRSREESEK 480
Query: 481 VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS 540
VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS
Sbjct: 481 VSRIVLKKNTVKTMRSLLREGVTGGSGRRAFVPGFEVGGKTGTAQKVIKKRYSDTLNFNS 540
Query: 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVFLK 598
FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVFLK
Sbjct: 541 FLAVFPTTDPQYIVLSFMDSPKIKERNQLTAGINVAPMVGNIIRRSASMLGVKPVFLK 598
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)
Query: 285 GTVILNVSTGEVISMVSIPDYDPHEAFKGKKEGWFNRISYGIFEMGSIFKVFTIAMGIDS 344
G + ++ TG +++ + Y E FNR + + + GS FK A +DS
Sbjct: 442 GLIAMDPRTGRILATIGGFSYSQSE---------FNRSTQAMRQPGSCFKPIVYAAALDS 492
Query: 345 GLFTVKDLFDTRNPIKV---GKHVIHDYHPQN--RILTIPEIFRY----SSNIGAAQIAD 395
G + D PI+V GK + P+N + + R+ S N+ ++A
Sbjct: 493 GYTPASVIMDA--PIEVVSRGKI----WKPENYSKNFSGASTLRFGLEKSRNLMTVRLAH 546
Query: 396 AMGIQGHKEFLYRLGLLSKLETELPEIQAPSYPSQWKRIHSLTISFGHGLSTTPLQTAVA 455
MG+ ++ G+ K+ LP +S G G TT L+ A
Sbjct: 547 NMGMTVVADYAENFGIYDKMLPVLP------------------MSLGAG-ETTVLRMVSA 587
Query: 456 AAALINEGRLIPPTFMIR 473
A N G+ I P+F+ R
Sbjct: 588 YAVFANGGKQIRPSFIDR 605
>gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus
str. psy62]
Length = 202
Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 278 KYNAESVGTVILNVSTGEVISMVSIPDYDPHEAF 311
++ SVG + L+V G+++S+ S DPH F
Sbjct: 21 RFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCF 54
>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 517
Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 254 QPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISM 299
Q ++ +DLR++ E+ EN K V + N + +VI+M
Sbjct: 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242
>gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 78 IVVCLVIYIILAIRIIQYGNIHPEPIAPSMNIDEYGMSRPDIIDRNGEILATDIPTFSLY 137
+ VCL+ +I+ I I+Y P PS++ P I+R E+L I
Sbjct: 8 LFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIFI 67
Query: 138 VEPHKVISPDEIIEKLQI 155
H +S D +++K+ I
Sbjct: 68 SGVHHSVSKDILLQKIPI 85
>gi|254780409|ref|YP_003064822.1| ribose-phosphate pyrophosphokinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 310
Score = 25.0 bits (53), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 563 IKERNQLTAGINVAPMVGNIIRRSA 587
IKERN ++ + V+P VG ++R A
Sbjct: 152 IKERNDISNLMVVSPDVGGVVRARA 176
>gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 120
Score = 24.3 bits (51), Expect = 6.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 566 RNQLTAGINV--APMVGNIIRRSASMLGVKPVFL 597
R+ L G N+ A VGN++ A +GVK V+
Sbjct: 62 RSSLKTGANIVAATAVGNLLVERAVKVGVKSVYF 95
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 23.5 bits (49), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 318 WFNRISYGIFEMGSIFKVFTIAMGIDSGLFTV--KDLFDTRNPIKVGKHVIH 367
WF S + G ++ +MGIDS +T+ + + R VG H H
Sbjct: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,673
Number of Sequences: 1233
Number of extensions: 16735
Number of successful extensions: 47
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 10
length of query: 598
length of database: 328,796
effective HSP length: 79
effective length of query: 519
effective length of database: 231,389
effective search space: 120090891
effective search space used: 120090891
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)