Query         gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs    143 out of 371
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 21:43:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781104.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1es6_A Matrix protein VP40; b  52.5       9 0.00027   18.6   2.2   29   56-85      3-31  (70)
  2 >1jnm_A Proto-oncogene C-JUN;   46.5      21 0.00061   16.5   5.8   38   23-60     20-57  (62)
  3 >1a02_F FOS, AP-1 fragment FOS  46.4      21 0.00061   16.4   5.4   36   23-58     21-56  (56)
  4 >1dip_A Delta-sleep-inducing p  46.2      15 0.00044   17.3   2.5   28   32-59     14-41  (77)
  5 >2c6n_A Angiotensin-converting  44.9      21 0.00063   16.4   3.1   29   60-89     26-54  (150)
  6 >2qiz_A Ubiquitin conjugation   43.6      21 0.00063   16.4   3.0   48    6-57    215-262 (296)
  7 >1j36_A ANCE, angiotensin conv  41.5      25 0.00073   16.0   3.0   34   60-94     25-58  (278)
  8 >1hjb_A Ccaat/enhancer binding  41.3      25 0.00073   16.0   5.9   36   24-59     35-70  (87)
  9 >2w6a_A ARF GTPase-activating   39.9      26 0.00077   15.8   4.9   36   26-61     28-63  (63)
 10 >1m1j_A Fibrinogen alpha subun  39.4      27 0.00079   15.8   5.7   29   28-56      3-31  (373)
 11 >1bgx_T TAQ DNA polymerase; DN  38.5     8.3 0.00024   18.9   0.2   50   30-82      5-54  (99)
 12 >1u0i_A IAAL-E3; coiled-coil,   35.3      31 0.00091   15.4   2.7   18   29-46      4-21  (26)
 13 >1jcd_A Major outer membrane l  34.3      32 0.00095   15.3   6.0   39   21-59      7-45  (52)
 14 >1t2k_D Cyclic-AMP-dependent t  33.2      33 0.00099   15.2   5.9   36   24-59     21-56  (61)
 15 >1fos_E P55-C-FOS proto-oncoge  28.6      40  0.0012   14.7   5.9   36   24-59     21-56  (62)
 16 >1r42_A Angiotensin I converti  25.7      45  0.0013   14.4   2.4   32   60-92     25-56  (237)
 17 >1gu4_A CAAT/enhancer binding   24.9      47  0.0014   14.3   5.9   36   24-59     35-70  (78)
 18 >1ci6_A Transcription factor A  24.8      47  0.0014   14.3   5.9   36   24-59     22-57  (63)
 19 >2hhv_A DNA polymerase I; DNA   24.5      47  0.0014   14.3   4.3   49   29-80      8-56  (112)
 20 >1dh3_A Transcription factor C  20.9      56  0.0017   13.8   4.3   31   24-54     21-51  (55)

No 1  
>>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:197-266)
Probab=52.49  E-value=9  Score=18.64  Aligned_cols=29  Identities=21%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             HHHCCHHHHHHHHHHHHHHHCCEECCHHHC
Q ss_conf             971897999999998776418540588883
Q gi|254781104|r   56 ALLIQPDRIKDLVSLYQKELQLQATNPINL   85 (125)
Q Consensus        56 ayL~~P~RL~~La~~y~~~L~L~Pi~p~qi   85 (125)
                      +-|++|+.++.+.+... .++..|+.|..-
T Consensus         3 sdltspdkiq~imn~~q-d~kivpidptkn   31 (70)
T 1es6_A            3 ADLTSPEKIQAIMTSLQ-DFKIVPIDPTKN   31 (70)
T ss_dssp             HHHSCHHHHHHHHHHGG-GCEEEEEEGGGT
T ss_pred             CCCCCHHHHHHHHHHCC-CCEEEECCCCCC
T ss_conf             34678789999997602-450661277555


No 2  
>>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} (A:)
Probab=46.47  E-value=21  Score=16.46  Aligned_cols=38  Identities=21%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999999999999997189
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      -|.....++.++..|+.+....+..+..|+.|...|..
T Consensus        20 kk~~~~~Le~~v~~L~~e~~~L~~~~~~l~~e~~~lk~   57 (62)
T 1jnm_A           20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999999


No 3  
>>1a02_F FOS, AP-1 fragment FOS; transcription factor, NFAT, NF-AT, FOS-JUN, quaternary protein-DNA complex, transcription synergy; HET: DNA; 2.70A {Homo sapiens} (F:)
Probab=46.38  E-value=21  Score=16.45  Aligned_cols=36  Identities=19%  Similarity=0.100  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999971
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALL   58 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL   58 (125)
                      -|..+..++.++..|+.++...+..+..|+.|-..|
T Consensus        21 kk~~~~~Le~~v~~L~~~~~~L~~~~~~l~~e~~~L   56 (56)
T 1a02_F           21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL   56 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999998779999999999999999999999998629


No 4  
>>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:)
Probab=46.22  E-value=15  Score=17.29  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999718
Q gi|254781104|r   32 EKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        32 ~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      +|+.-|+..|.+..++++.|+.|-++|-
T Consensus        14 EEVevLke~I~eL~~~~~~Le~EN~~Lk   41 (77)
T 1dip_A           14 EEVEILKEQIRELVEKNSQLERENTLLK   41 (77)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999


No 5  
>>2c6n_A Angiotensin-converting enzyme, somatic isoform; hydrolase, angiotensin-I converting enzyme, N domain, zinc metallopeptidase, metalloprotease; HET: NAG NDG LPR; 3.0A {Homo sapiens} PDB: 2c6f_A* (A:264-413)
Probab=44.95  E-value=21  Score=16.38  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=23.7

Q ss_pred             CHHHHHHHHHHHHHHHCCEECCHHHCCCHH
Q ss_conf             979999999987764185405888832288
Q gi|254781104|r   60 QPDRIKDLVSLYQKELQLQATNPINLITYD   89 (125)
Q Consensus        60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~   89 (125)
                      .|.++=+.|+.||..|||.|+.++ |+.-+
T Consensus        26 t~~~mf~~ae~Ff~SlGl~~lp~~-FW~~S   54 (150)
T 2c6n_A           26 NATHMFRVAEEFFTSLELSPMPPE-FWEGS   54 (150)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHH-HHHSC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCHH-HHHHH
T ss_conf             899999999999997275315589-99887


No 6  
>>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:187-482)
Probab=43.63  E-value=21  Score=16.36  Aligned_cols=48  Identities=17%  Similarity=0.073  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999999999997
Q gi|254781104|r    6 DFIILGVVLASITITYSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWAL   57 (125)
Q Consensus         6 ~ii~~~~~i~l~~~~y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEway   57 (125)
                      ++++=+.++...+.    .+.......+..++.++|...+..+..++++|+-
T Consensus       215 nFiTecFFLT~~a~----hlg~~~~~~~~~r~~r~l~~lq~~l~~~~~~~~~  262 (296)
T 2qiz_A          215 NFISDCFFLTLTYL----HYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAAN  262 (296)
T ss_dssp             CHHHHHHHHHHHHH----HHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             96699999999999----9634999999999999999999999998731147


No 7  
>>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A {Drosophila melanogaster} (A:258-426,A:484-592)
Probab=41.55  E-value=25  Score=15.99  Aligned_cols=34  Identities=6%  Similarity=0.101  Sum_probs=26.8

Q ss_pred             CHHHHHHHHHHHHHHHCCEECCHHHCCCHHHCCCC
Q ss_conf             97999999998776418540588883228885655
Q gi|254781104|r   60 QPDRIKDLVSLYQKELQLQATNPINLITYDDLARL   94 (125)
Q Consensus        60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l~~~   94 (125)
                      .|.++-++|+.||..|||.|+.+ -|+.-+.+..+
T Consensus        25 t~~~mf~~ae~FF~SLGl~~lp~-~FW~~S~~~kP   58 (278)
T 1j36_A           25 TPLKMFQMGDDFFTSMNLTKLPQ-DFWDKSIIEKP   58 (278)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCCCH-HHHHHCBCSCC
T ss_pred             CHHHHHHHHHHHHHHHCCHHCCH-HHHHHHHHHCC
T ss_conf             39999899999999836410306-78744554046


No 8  
>>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} (A:)
Probab=41.34  E-value=25  Score=15.97  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      +.....++.++..|+.++..++..+..|+.|-.+|.
T Consensus        35 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~l~   70 (87)
T 1hjb_A           35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             875068887899987325899999999999999999


No 9  
>>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:)
Probab=39.86  E-value=26  Score=15.83  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             999999999999999999999999999999971897
Q gi|254781104|r   26 ETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP   61 (125)
Q Consensus        26 ~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P   61 (125)
                      +++.+.+--..+..+++..+..+..|+.|-+-|-+|
T Consensus        28 kiQqLmkvN~nls~Elr~lQ~~~~~Lq~ENs~Lr~~   63 (63)
T 2w6a_A           28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQP   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999997877599999999999999774530498


No 10 
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=39.36  E-value=27  Score=15.78  Aligned_cols=29  Identities=21%  Similarity=0.144  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254781104|r   28 EGKKEKLRILENKITSEQNYIDLLKAQWA   56 (125)
Q Consensus        28 ~~~~~ei~~L~~~I~~~~~~i~~LkAEwa   56 (125)
                      ..+.+++.++++++..++++++...+|+.
T Consensus         3 ~~lk~~~~~~~e~~~~~~~~~~~~~~~~~   31 (373)
T 1m1j_A            3 VTLKQRVATQVNRIKALQNSIQEQVVEMK   31 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999


No 11 
>>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} (T:452-550)
Probab=38.55  E-value=8.3  Score=18.87  Aligned_cols=50  Identities=18%  Similarity=0.048  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEECCH
Q ss_conf             99999999999999999999999999971897999999998776418540588
Q gi|254781104|r   30 KKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQATNP   82 (125)
Q Consensus        30 ~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi~p   82 (125)
                      +++....+++++...++++..+--+---++||.   .+++.-|++|+|.|...
T Consensus         5 l~~~~~~l~~~l~~le~~~~~laG~~fNl~Spk---Ql~~vLf~~L~L~~~~k   54 (99)
T 1bgx_T            5 LRALSLEVAEEIARLEAEVFRLAGHPFNLNSRD---QLERVLFDELGLPAIGK   54 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCHH---HHTTTTTTSCCCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCCCC
T ss_conf             999999876789999999998613543345177---77787664026743322


No 12 
>>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:)
Probab=35.29  E-value=31  Score=15.40  Aligned_cols=18  Identities=17%  Similarity=0.342  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999
Q gi|254781104|r   29 GKKEKLRILENKITSEQN   46 (125)
Q Consensus        29 ~~~~ei~~L~~~I~~~~~   46 (125)
                      .++++|..|+++|...+.
T Consensus         4 alekeiaalekeiaalek   21 (26)
T 1u0i_A            4 ALEKEIAALEKEIAALEK   21 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999986


No 13 
>>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} (A:)
Probab=34.26  E-value=32  Score=15.28  Aligned_cols=39  Identities=10%  Similarity=-0.011  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999999718
Q gi|254781104|r   21 YSIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        21 y~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      -.+..+++.+..++.+|..+|...+..+.-.|-|++.-|
T Consensus         7 ~qlssdvqtln~Kvdqls~Dvna~r~dvqaaK~eAaRaN   45 (52)
T 1jcd_A            7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARAN   45 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             898889999999999998889998899999888999998


No 14 
>>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} (D:)
Probab=33.17  E-value=33  Score=15.18  Aligned_cols=36  Identities=22%  Similarity=0.100  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |-....++.++..|+.++...+..+..|+.|-.+|-
T Consensus        21 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~E~~~Lr   56 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 15 
>>1fos_E P55-C-FOS proto-oncogene protein; coiled-coil, DNA-binding protein, heterodimer, transcription/DNA complex; HET: DNA; 3.05A {Homo sapiens} (E:)
Probab=28.64  E-value=40  Score=14.71  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |-....++.++..|+.+....+..+..|+.|-.+|.
T Consensus        21 k~~~~~Le~~v~~l~~~n~~L~~e~~~l~~e~~~l~   56 (62)
T 1fos_E           21 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   56 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 16 
>>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, native or open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} (A:279-427,A:502-589)
Probab=25.70  E-value=45  Score=14.38  Aligned_cols=32  Identities=13%  Similarity=0.051  Sum_probs=24.5

Q ss_pred             CHHHHHHHHHHHHHHHCCEECCHHHCCCHHHCC
Q ss_conf             979999999987764185405888832288856
Q gi|254781104|r   60 QPDRIKDLVSLYQKELQLQATNPINLITYDDLA   92 (125)
Q Consensus        60 ~P~RL~~La~~y~~~L~L~Pi~p~qi~~~~~l~   92 (125)
                      .|.++=+.|+.||..|||.|+.++ |+.-+-+.
T Consensus        25 t~~~Mf~~ae~FF~SLGl~~lp~s-FW~~S~~~   56 (237)
T 1r42_A           25 DAQRIFKEAEKFFVSVGLPNMTQG-FWENSMLT   56 (237)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCCCTT-HHHHCBCS
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
T ss_conf             299988989999998543344516-68887760


No 17 
>>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} (A:)
Probab=24.94  E-value=47  Score=14.30  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |-....++.++..|+.++...+..+..|..|...|.
T Consensus        35 k~~~~~Le~~~~~L~~e~~~L~~~~~~l~~e~~~lr   70 (78)
T 1gu4_A           35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             875068888899987325899999999999999999


No 18 
>>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} (A:)
Probab=24.80  E-value=47  Score=14.28  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |.....++.++..++.++...+..+..|+.|-..|.
T Consensus        22 k~~~~eLe~~~~~l~~~~~~L~~e~~~l~~e~~~lr   57 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999988999999999999


No 19 
>>2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} (A:196-307)
Probab=24.55  E-value=47  Score=14.25  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEC
Q ss_conf             9999999999999999999999999999718979999999987764185405
Q gi|254781104|r   29 GKKEKLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKELQLQAT   80 (125)
Q Consensus        29 ~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L~L~Pi   80 (125)
                      .+..-...+..++....+++..+--+.--++||.   .+++..|+.|+|-+.
T Consensus         8 ~l~~l~~~l~~~~~~l~~~~~~~~g~~fNl~S~~---qv~~~Lf~~l~lp~~   56 (112)
T 2hhv_A            8 RLEQMGKELAEQLGTVEQRIYELAGQEFNINSPK---QLGVILFEKLQLPVL   56 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHH---HHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHH---HHHHHHHHHHCCCCC
T ss_conf             8888776777788888777774010002333113---355555443114578


No 20 
>>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} (A:)
Probab=20.92  E-value=56  Score=13.81  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQ   54 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAE   54 (125)
                      |-.+..++.++..|+.+....+..+..|+.|
T Consensus        21 k~~~~~Le~~v~~L~~en~~L~~~~~~l~~e   51 (55)
T 1dh3_A           21 KEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999998


Done!