Query         gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 125
No_of_seqs    143 out of 371
Neff          5.9 
Searched_HMMs 23785
Date          Wed Jun  1 00:38:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781104.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2wg5_A General control protein  53.6     7.7 0.00032   18.1   2.7   29   33-61      8-36  (109)
  2 1dip_A Delta-sleep-inducing pe  47.9     9.6  0.0004   17.5   2.5   28   32-59     15-42  (78)
  3 2w6a_A ARF GTPase-activating p  41.0      18 0.00074   15.9   4.9   37   25-61     27-63  (63)
  4 1jcd_A Major outer membrane li  35.9      21 0.00089   15.4   6.0   38   22-59      8-45  (52)
  5 1hjb_A Ccaat/enhancer binding   35.3      22 0.00091   15.4   5.9   36   23-58     34-69  (87)
  6 1u0i_A IAAL-E3; coiled-coil, d  34.6      22 0.00094   15.3   2.7   16   29-44      4-19  (26)
  7 1jnm_A Proto-oncogene C-JUN; B  30.0      27  0.0011   14.8   5.7   37   24-60     21-57  (62)
  8 2wt7_A Proto-oncogene protein   28.0      29  0.0012   14.6   5.9   36   24-59     22-57  (63)
  9 1gu4_A CAAT/enhancer binding p  27.8      29  0.0012   14.6   5.9   36   24-59     35-70  (78)
 10 3m9b_A Proteasome-associated A  27.7      29  0.0012   14.6   4.4   29   33-61     69-97  (251)
 11 1es6_A Matrix protein VP40; be  26.5      30  0.0013   14.5   2.2   31   54-85    197-227 (296)
 12 2xkj_E Topoisomerase IV; type   24.4      33  0.0014   14.2   4.7   40   33-75    697-736 (767)
 13 1ci6_A Transcription factor AT  24.2      34  0.0014   14.2   5.9   36   24-59     22-57  (63)
 14 2aze_B Transcription factor E2  23.0      36  0.0015   14.1   3.8   29   27-55      8-36  (106)

No 1  
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.57  E-value=7.7  Score=18.13  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999999999999971897
Q gi|254781104|r   33 KLRILENKITSEQNYIDLLKAQWALLIQP   61 (125)
Q Consensus        33 ei~~L~~~I~~~~~~i~~LkAEwayL~~P   61 (125)
                      ++.+|+.++...++++..|+.|...|.+|
T Consensus         8 r~k~Le~~~~~l~~ei~~Lk~el~~l~~p   36 (109)
T 2wg5_A            8 RMKQLEDKVEELLSKNYHLENEVARLRSP   36 (109)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999999985499


No 2  
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=47.91  E-value=9.6  Score=17.54  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999718
Q gi|254781104|r   32 EKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        32 ~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      +|+.-|+..|.+..++++.|+.|-++|-
T Consensus        15 EEVevLke~I~eL~~~~~~Le~EN~~Lk   42 (78)
T 1dip_A           15 EEVEILKEQIRELVEKNSQLERENTLLK   42 (78)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999


No 3  
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=40.99  E-value=18  Score=15.94  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             9999999999999999999999999999999971897
Q gi|254781104|r   25 HETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQP   61 (125)
Q Consensus        25 ~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~P   61 (125)
                      -+++.+.+--..+..+++..+..+..|+.|-+-|-+|
T Consensus        27 akIQqLmkvN~~ls~Elr~mQ~~~~~Lq~ENs~Lr~~   63 (63)
T 2w6a_A           27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQP   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999997867699999999999999774630498


No 4  
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.88  E-value=21  Score=15.44  Aligned_cols=38  Identities=11%  Similarity=0.013  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999999999718
Q gi|254781104|r   22 SIKHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        22 ~iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      .+..+++.+..++.+|..+|...+..+.-.|-|++.-|
T Consensus         8 qlssdvqtln~Kvdqls~Dina~rsdvqaaKdeAaRaN   45 (52)
T 1jcd_A            8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARAN   45 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99889999989999998889998899999889999998


No 5  
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.34  E-value=22  Score=15.39  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999999999999971
Q gi|254781104|r   23 IKHETEGKKEKLRILENKITSEQNYIDLLKAQWALL   58 (125)
Q Consensus        23 iK~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL   58 (125)
                      -|.....++.++..|+.+...++..+..|+.|..+|
T Consensus        34 kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~E~~~l   69 (87)
T 1hjb_A           34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL   69 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 6  
>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1
Probab=34.58  E-value=22  Score=15.32  Aligned_cols=16  Identities=19%  Similarity=0.333  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999
Q gi|254781104|r   29 GKKEKLRILENKITSE   44 (125)
Q Consensus        29 ~~~~ei~~L~~~I~~~   44 (125)
                      .++++|..|+++|...
T Consensus         4 alekeiaalekeiaal   19 (26)
T 1u0i_A            4 ALEKEIAALEKEIAAL   19 (26)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999


No 7  
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.97  E-value=27  Score=14.85  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999999999999999997189
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLIQ   60 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~~   60 (125)
                      |.....++.++..|+.+....+..+..|+.|-..|-.
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~~~~L~~e~~~Lk~   57 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999


No 8  
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.02  E-value=29  Score=14.64  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |-.+..++.++..|+.+....+..+..|+.|-.+|.
T Consensus        22 k~~~~~Le~~~~~l~~~~~~L~~e~~~l~~e~~~Lk   57 (63)
T 2wt7_A           22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 9  
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=27.82  E-value=29  Score=14.62  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |.....++.++..|+.+....+..+..|+.|..+|-
T Consensus        35 k~~~~~le~~~~~l~~en~~L~~~~~~L~~E~~~Lr   70 (78)
T 1gu4_A           35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 10 
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.69  E-value=29  Score=14.60  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             99999999999999999999999971897
Q gi|254781104|r   33 KLRILENKITSEQNYIDLLKAQWALLIQP   61 (125)
Q Consensus        33 ei~~L~~~I~~~~~~i~~LkAEwayL~~P   61 (125)
                      +-.+|...+...+++|..|+.|-.-|.+|
T Consensus        69 ~NekL~~~L~~AR~ei~~Lr~el~~L~~P   97 (251)
T 3m9b_A           69 RNSKLMETLKEARQQLLALREEVDRLGQP   97 (251)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999999974599


No 11 
>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} SCOP: b.31.1.1 b.31.1.1 PDB: 1h2d_A
Probab=26.48  E-value=30  Score=14.55  Aligned_cols=31  Identities=19%  Similarity=0.413  Sum_probs=25.3

Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCEECCHHHC
Q ss_conf             99971897999999998776418540588883
Q gi|254781104|r   54 QWALLIQPDRIKDLVSLYQKELQLQATNPINL   85 (125)
Q Consensus        54 EwayL~~P~RL~~La~~y~~~L~L~Pi~p~qi   85 (125)
                      .-+-|++|+.++.+.+... .++..|+.|..-
T Consensus       197 ~~sdltspdkiq~i~~~~~-d~kivpidptk~  227 (296)
T 1es6_A          197 NSADLTSPEKIQAIMTSLQ-DFKIVPIDPTKN  227 (296)
T ss_dssp             CHHHHSCHHHHHHHHHHGG-GCEEEEEEGGGT
T ss_pred             CCCCCCCHHHHHHHHHHCC-CCEEEECCCCCC
T ss_conf             5234678789999997602-450661277555


No 12 
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=24.42  E-value=33  Score=14.24  Aligned_cols=40  Identities=15%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999997189799999999877641
Q gi|254781104|r   33 KLRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQKEL   75 (125)
Q Consensus        33 ei~~L~~~I~~~~~~i~~LkAEwayL~~P~RL~~La~~y~~~L   75 (125)
                      ++.+|++++...++++..|+   ..|++++++.++...+.++|
T Consensus       697 e~~kL~~E~~el~~ei~eL~---~iL~s~~~l~~~i~~EL~el  736 (767)
T 2xkj_E          697 EEMEIRHEQDELSAKAAIIR---EQLENPESLKNLIISELKED  736 (767)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999---99789999999999999999


No 13 
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.21  E-value=34  Score=14.21  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999999999718
Q gi|254781104|r   24 KHETEGKKEKLRILENKITSEQNYIDLLKAQWALLI   59 (125)
Q Consensus        24 K~~t~~~~~ei~~L~~~I~~~~~~i~~LkAEwayL~   59 (125)
                      |.....++.++..|+.+....+..+..|+.|-.+|-
T Consensus        22 k~~~~~le~~~~~L~~~n~~L~~~~~~L~~E~~~Lk   57 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999


No 14 
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.05  E-value=36  Score=14.07  Aligned_cols=29  Identities=21%  Similarity=0.324  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999
Q gi|254781104|r   27 TEGKKEKLRILENKITSEQNYIDLLKAQW   55 (125)
Q Consensus        27 t~~~~~ei~~L~~~I~~~~~~i~~LkAEw   55 (125)
                      .+.+..++..|+.+-....+.|..++..+
T Consensus         8 ~~~L~~El~~L~~~E~~LD~li~~~~~~L   36 (106)
T 2aze_B            8 LEGLTQDLRQLQESEQQLDHLMNICTTQL   36 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999


Done!