RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781104|ref|YP_003065517.1| hypothetical protein
CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62]
         (125 letters)



>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase;
          beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus
          jannaschii} SCOP: c.1.27.1
          Length = 251

 Score = 28.1 bits (63), Expect = 0.58
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 34 LRILENKITSEQNYIDLLKAQW--ALLIQPDRIKDLVSLYQK 73
           + +E+ +    +YID +K  W  + +I  D +K+ ++ Y+ 
Sbjct: 25 PKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKD 66


>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein
          structure initiative, midwest center for structural
          genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP:
          c.1.27.1
          Length = 276

 Score = 26.6 bits (59), Expect = 1.4
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 34 LRILENKITSEQNYIDLLKAQWALLIQPDRIKDLVSLYQK 73
          L+  ++ I    +YID +K  W   +    +++ +S  ++
Sbjct: 52 LQFFKDAIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKE 91


>2vga_A Protein A41, A41; immunomodulator, chemokine binding protein,
           glycoprotein, viral protein, early protein; 1.9A
           {Vaccinia virus}
          Length = 207

 Score = 24.7 bits (53), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 65  KDLVSLYQKELQLQATNPINLITYDDLARLKKHTLL 100
           +D V      L    T PIN +T+DDL +L +  ++
Sbjct: 79  RDTVYAKFASLDPWTTEPINSMTHDDLVKLTEECIV 114


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.5 bits (52), Expect = 7.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 26  ETEGKKEKLRILE--NKITSEQ---NYIDLLKAQWALLIQPDRIKDLV 68
           E E +++  + LE  N+  SEQ   N I+   A  A   QPD   D++
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD--ADII 154


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,016,870
Number of extensions: 42119
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 22
Length of query: 125
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 44
Effective length of database: 3,729,466
Effective search space: 164096504
Effective search space used: 164096504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)