Query gi|254781106|ref|YP_003065519.1| cell division protein MraZ [Candidatus Liberibacter asiaticus str. psy62] Match_columns 145 No_of_seqs 111 out of 1044 Neff 6.9 Searched_HMMs 33803 Date Wed Jun 1 21:40:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781106.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1n0e_A Protein MRAZ; cell div 100.0 6.5E-42 0 278.8 11.4 128 2-134 25-152 (152) 2 >1n0e_A Protein MRAZ; cell div 96.7 0.0011 3.3E-08 43.3 2.8 54 79-134 26-80 (152) 3 >2glw_A PHS018, 92AA long hypo 94.4 0.11 3.4E-06 31.0 5.8 79 5-114 4-86 (92) 4 >1yfb_A Transition state regul 92.0 0.34 9.9E-06 28.1 5.2 25 8-32 14-38 (59) 5 >1yfb_A Transition state regul 91.7 0.15 4.6E-06 30.2 3.2 23 86-108 16-38 (59) 6 >2fwt_A DHC, diheme cytochrome 45.1 22 0.00066 16.9 3.2 47 47-93 22-73 (75) 7 >2fw5_A DHC, diheme cytochrome 33.0 37 0.0011 15.6 3.1 46 47-92 33-83 (86) 8 >3ei4_B DNA damage-binding pro 20.7 33 0.00098 15.8 0.7 20 107-126 23-42 (47) 9 >1pqh_A Aspartate 1-decarboxyl 19.2 67 0.002 14.0 2.6 39 83-121 32-74 (143) 10 >2c45_A Aspartate 1-decarboxyl 17.2 74 0.0022 13.7 2.8 39 83-121 15-57 (139) No 1 >>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} (A:1-152) Probab=100.00 E-value=6.5e-42 Score=278.77 Aligned_cols=128 Identities=16% Similarity=0.378 Sum_probs=122.2 Q ss_pred CCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 64222112105676627107889999852489849951656644130452367899999863068875137999998631 Q gi|254781106|r 2 SRFLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHG 81 (145) Q Consensus 2 ~~F~G~~~~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~~~~~~~l~~~~~~~w~~~~~~i~~l~~~~~~~~~~~r~~~~ 81 (145) +||+|+|+|+||+|||++|||+||++|. .++|+++++ ++||++||+++|++++++|.+++..+++.+.+.|.+++ T Consensus 25 ~mF~G~~~~~lD~KGRl~iPa~fR~~L~----~~lvl~~~~-~~cL~~yp~~~w~~~~~ki~~l~~~~~~~r~l~r~~~~ 99 (152) T 1n0e_A 25 HMLLGTFNITLDAKNRISLPAKLRAFFE----GSIVINRGF-ENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFA 99 (152) T ss_dssp SCBCSEEEECCCTTSEEECCSHHHHHCC----SEEECCCCT-TSCCEEBCHHHHHHHHHHHTTSCSSSHHHHHHHHHHHT T ss_pred CCEEECCCCCCCCCCCEEECHHHHHHHC----CEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC T ss_conf 4332234546767872475699998609----869997799-88330159988999999998368324899999999845 Q ss_pred HHHHCCCCCCCEEECCHHHHHHCCCCCEEEEEECCCEEEECCHHHHHHHHHHH Q ss_conf 11112217861475198999870998539999419989962989999999995 Q gi|254781106|r 82 GGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEES 134 (145) Q Consensus 82 ~a~~~~~D~~GRi~ip~~lr~~agi~~ev~~vG~g~~fEIW~~~~~~~~~~~~ 134 (145) +++++++|+||||+||+.||++|||+++|+|||++++||||||++|+++++++ T Consensus 100 ~a~~v~lD~~GRi~iP~~Lr~~agl~~evv~vG~~~~~EIW~~e~~~~~~~ea 152 (152) T 1n0e_A 100 NANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANS 152 (152) T ss_dssp TCCEEECCTTSEEECCHHHHHHTTCCSCEEEEECBSCEEEEEHHHHHHHHHSS T ss_pred CCEEECCCCCCEEECCHHHHHHHCCCCEEEEEECCCEEEEECHHHHHHHHHHH T ss_conf 85483227774374899999984999709999279989992878999998525 No 2 >>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} (A:1-152) Probab=96.67 E-value=0.0011 Score=43.34 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=43.4 Q ss_pred HHHHHHHCCCCCCCEEECCHHHHHHCCCCCEEEE-EECCCEEEECCHHHHHHHHHHH Q ss_conf 6311111221786147519899987099853999-9419989962989999999995 Q gi|254781106|r 79 VHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTF-VGRGNYFQLWNPQTFRKLQEES 134 (145) Q Consensus 79 ~~~~a~~~~~D~~GRi~ip~~lr~~agi~~ev~~-vG~g~~fEIW~~~~~~~~~~~~ 134 (145) .|.+..+..+|.-||+.||..+|+.. ++.+++ .|..+++++|.++.|++..++. T Consensus 26 mF~G~~~~~lD~KGRl~iPa~fR~~L--~~~lvl~~~~~~cL~~yp~~~w~~~~~ki 80 (152) T 1n0e_A 26 MLLGTFNITLDAKNRISLPAKLRAFF--EGSIVINRGFENCLEVRKPQDFQKYFEQF 80 (152) T ss_dssp CBCSEEEECCCTTSEEECCSHHHHHC--CSEEECCCCTTSCCEEBCHHHHHHHHHHH T ss_pred CEEECCCCCCCCCCCEEECHHHHHHH--CCEEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 33223454676787247569999860--98699977998833015998899999999 No 3 >>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii OT3} (A:) Probab=94.40 E-value=0.11 Score=31.01 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=50.9 Q ss_pred CCCCCCEECCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 22112105676627107889999852489849951656644130452367899999863068875137999998631111 Q gi|254781106|r 5 LSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGGI 84 (145) Q Consensus 5 ~G~~~~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~~~~~~~l~~~~~~~w~~~~~~i~~l~~~~~~~~~~~r~~~~~a~ 84 (145) +-.|+.+++-.||+++|..-|+.+.-....-+-+. +. .....+... ... T Consensus 4 LAKFha~v~r~Grv~iP~~~R~~~~l~~gDyvevi-------IR---------------k~~~~~~~r---------~~~ 52 (92) T 2glw_A 4 LAKFHTTVHRIGRIIIPAGTRKFYGIEQGDFVEIK-------IV---------------KYEGEEPKE---------GTF 52 (92) T ss_dssp SCEEEEECBGGGEEECCHHHHHHHTCCTTCEEEEE-------EE---------------EEETTEEEE---------EEE T ss_pred CCEEEEEECCCCEEEEEHHHHHEECCCCCCEEEEE-------EE---------------EEECCCCCE---------EEE T ss_conf 50016898569759977225202066779999999-------99---------------973576303---------799 Q ss_pred HCCCCCCCEEECCHHHHHHCCCCC----EEEEEE Q ss_conf 122178614751989998709985----399994 Q gi|254781106|r 85 FLKMDSEGRILMTDFIRVFTGIEN----EVTFVG 114 (145) Q Consensus 85 ~~~~D~~GRi~ip~~lr~~agi~~----ev~~vG 114 (145) -+.+-.+|=|+||+.+|+..+|+. ||+++| T Consensus 53 iaRvg~kG~itIPk~lR~~~~i~~gd~vEVlll~ 86 (92) T 2glw_A 53 TARVGEQGSVIIPKALRDVIGIKPGEVIEVLLLG 86 (92) T ss_dssp EEECCGGGEEECCHHHHHHHTCCTTCEEEEEEEE T ss_pred EEEEECCCEEECCHHHHHHHCCCCCCEEEEEEEE T ss_conf 9996058259867899887098999989999996 No 4 >>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} (A:) Probab=92.03 E-value=0.34 Score=28.11 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=13.8 Q ss_pred CCCEECCCCCEEECHHHHHHHHHCC Q ss_conf 1210567662710788999985248 Q gi|254781106|r 8 VTQKIDSKGRVSVPFVFRTILAQRC 32 (145) Q Consensus 8 ~~~~lD~KGRi~iPa~fR~~L~~~~ 32 (145) .-+++|+=||+.||...|+.|.-.. T Consensus 14 iVRkiD~LGRiViP~ElRr~l~i~~ 38 (59) T 1yfb_A 14 IVRKVDELGRVVIPIELRRTLGIAE 38 (59) T ss_dssp EEEECCTTCEEECCHHHHHHTTCCT T ss_pred EEEEECCCCCEEEEHHHHHHCCCCC T ss_conf 4874236887992299997769999 No 5 >>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} (A:) Probab=91.68 E-value=0.15 Score=30.18 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.0 Q ss_pred CCCCCCCEEECCHHHHHHCCCCC Q ss_conf 22178614751989998709985 Q gi|254781106|r 86 LKMDSEGRILMTDFIRVFTGIEN 108 (145) Q Consensus 86 ~~~D~~GRi~ip~~lr~~agi~~ 108 (145) =.+|.-|||+||..||.-.+|.. T Consensus 16 RkiD~LGRiViP~ElRr~l~i~~ 38 (59) T 1yfb_A 16 RKVDELGRVVIPIELRRTLGIAE 38 (59) T ss_dssp EECCTTCEEECCHHHHHHTTCCT T ss_pred EEECCCCCEEEEHHHHHHCCCCC T ss_conf 74236887992299997769999 No 6 >>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides} (A:1-75) Probab=45.15 E-value=22 Score=16.90 Aligned_cols=47 Identities=2% Similarity=-0.132 Sum_probs=34.0 Q ss_pred EECCCHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 304523678999998630-----68875137999998631111122178614 Q gi|254781106|r 47 ISVGNSDLLEYFEQKIAE-----YNPFSIQANQLSLLVHGGGIFLKMDSEGR 93 (145) Q Consensus 47 l~~~~~~~w~~~~~~i~~-----l~~~~~~~~~~~r~~~~~a~~~~~D~~GR 93 (145) -..+|...|..+...+.. .+....+.+.+..+|..+|.++.-.+-+| T Consensus 22 p~~lpa~~W~~i~~~m~~hfG~~a~L~~~~~~~I~~YLq~~A~d~~~~~~~~ 73 (75) T 2fwt_A 22 AALLPARSWTALMADLPNHFGEDASLDEASRGQIESYLVANAADSSGAGRAL 73 (75) T ss_dssp GGGSCHHHHHHHHTTGGGBTTBCCCCCHHHHHHHHHHHHHTSTTCCC----- T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 4528899999999748864785778687889999999997312245554321 No 7 >>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides} (A:1-86) Probab=33.03 E-value=37 Score=15.56 Aligned_cols=46 Identities=2% Similarity=-0.119 Sum_probs=32.4 Q ss_pred EECCCHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 304523678999998630-----6887513799999863111112217861 Q gi|254781106|r 47 ISVGNSDLLEYFEQKIAE-----YNPFSIQANQLSLLVHGGGIFLKMDSEG 92 (145) Q Consensus 47 l~~~~~~~w~~~~~~i~~-----l~~~~~~~~~~~r~~~~~a~~~~~D~~G 92 (145) -..+|...|..+...+.. .+....+.+.+..+|..+|.++.-.+.+ T Consensus 33 p~~lpa~~W~~i~~~m~~Hfg~~a~L~~~~~~~I~~YLq~~A~d~~~~~~~ 83 (86) T 2fw5_A 33 AALLPARSWTALMADLPNHFGEDASLDEASRGQIESYLVANAADSSGAGRA 83 (86) T ss_dssp GGGSCHHHHHHHHTCGGGBTTBCCCCCHHHHHHHHHHHHHTSTTTTSCCGG T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 552899999999975887578677768788999999999731224444322 No 8 >>3ei4_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, alternative splicing, disease mutation, DNA repair; HET: DNA; 3.30A {Homo sapiens} (B:110-120,B:401-436) Probab=20.74 E-value=33 Score=15.83 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=17.1 Q ss_pred CCEEEEEECCCEEEECCHHH Q ss_conf 85399994199899629899 Q gi|254781106|r 107 ENEVTFVGRGNYFQLWNPQT 126 (145) Q Consensus 107 ~~ev~~vG~g~~fEIW~~~~ 126 (145) -+|+.--|||-++-||+++. T Consensus 23 ~GD~LaS~MG~nILIWs~ee 42 (47) T 3ei4_B 23 MGDTLASAMGYHILIWSQEE 42 (47) T ss_dssp SSSSEEEEETTEEEEECCC- T ss_pred CCCEEEEECCCCEEEEECCC T ss_conf 99999998599299997862 No 9 >>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} (A:) Probab=19.17 E-value=67 Score=13.96 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=28.7 Q ss_pred HHHCCCCCCCEEECCHHHHHHCCCCC----EEEEEECCCEEEE Q ss_conf 11122178614751989998709985----3999941998996 Q gi|254781106|r 83 GIFLKMDSEGRILMTDFIRVFTGIEN----EVTFVGRGNYFQL 121 (145) Q Consensus 83 a~~~~~D~~GRi~ip~~lr~~agi~~----ev~~vG~g~~fEI 121 (145) ....+++=.|-|.|.+.|.+.|||-- +|+=+-.|.+||- T Consensus 32 VT~adL~Y~GSItID~~Ll~aagi~~~E~V~V~Nv~NG~Rf~T 74 (143) T 1pqh_A 32 VTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFST 74 (143) T ss_dssp CCBCCSSSCCCEEEEHHHHHHHTCCTTCEEEEEETTTCCEEEE T ss_pred EECCCCCCEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEE T ss_conf 8045532017789989999875998898899999999977999 No 10 >>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis} (A:) Probab=17.21 E-value=74 Score=13.68 Aligned_cols=39 Identities=5% Similarity=0.029 Sum_probs=26.1 Q ss_pred HHHCCCCCCCEEECCHHHHHHCCCCC----EEEEEECCCEEEE Q ss_conf 11122178614751989998709985----3999941998996 Q gi|254781106|r 83 GIFLKMDSEGRILMTDFIRVFTGIEN----EVTFVGRGNYFQL 121 (145) Q Consensus 83 a~~~~~D~~GRi~ip~~lr~~agi~~----ev~~vG~g~~fEI 121 (145) ..+.+++=.|-|.|.+.|.+.|||-- +|+=+-.|.+|+- T Consensus 15 VT~a~L~YeGSitID~~Ll~aagi~~~E~V~V~Nv~NG~Rf~T 57 (139) T 2c45_A 15 VTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVT 57 (139) T ss_dssp CCCEESSSCCEEEEEHHHHHHTTCCSSCCEEEEETTTCCEEEE T ss_pred EECCCCCEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEE T ss_conf 8044432027778889999875998798999998679948887 Done!