Query gi|254781106|ref|YP_003065519.1| cell division protein MraZ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 145
No_of_seqs 111 out of 1044
Neff 6.9
Searched_HMMs 13730
Date Wed Jun 1 11:24:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781106.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n0ea_ b.129.1.2 (A:) Hypothe 100.0 1.2E-43 0 287.1 11.0 138 1-145 3-140 (141)
2 d1n0ea_ b.129.1.2 (A:) Hypothe 97.2 0.00012 9.1E-09 46.8 3.5 49 82-132 8-57 (141)
3 d1yfba1 b.129.1.3 (A:3-53) Tra 93.9 0.049 3.6E-06 30.9 5.2 21 87-107 9-29 (51)
4 d1yfba1 b.129.1.3 (A:3-53) Tra 91.6 0.059 4.3E-06 30.3 2.9 33 8-40 6-38 (51)
5 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 36.3 9.2 0.00067 16.8 2.1 38 83-121 15-56 (121)
6 d2nn6d2 d.101.1.1 (D:147-235) 33.4 15 0.0011 15.6 3.2 53 84-136 9-69 (89)
7 d1ppya_ b.52.2.1 (A:) Pyruvoyl 21.4 24 0.0018 14.3 2.4 39 83-121 15-57 (118)
8 d1s6la1 a.4.5.79 (A:21-80) Alk 19.9 18 0.0013 15.1 1.2 19 77-95 34-52 (60)
9 d1ewqa4 d.75.2.1 (A:1-120) DNA 17.5 29 0.0021 13.8 1.8 41 12-54 5-47 (120)
10 d1seta2 d.104.1.1 (A:111-421) 17.2 22 0.0016 14.5 1.2 20 87-106 285-304 (311)
No 1
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=100.00 E-value=1.2e-43 Score=287.10 Aligned_cols=138 Identities=14% Similarity=0.346 Sum_probs=126.5
Q ss_pred CCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 96422211210567662710788999985248984995165664413045236789999986306887513799999863
Q gi|254781106|r 1 MSRFLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVH 80 (145)
Q Consensus 1 M~~F~G~~~~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~~~~~~~l~~~~~~~w~~~~~~i~~l~~~~~~~~~~~r~~~ 80 (145)
+.||+|+|.|+||+||||+|||+||+.| .+.+|+++++ ++||++||.+.|+++++++++++.++++.+.+.|.++
T Consensus 3 ~~MF~G~~~~~lD~KGRlsiPa~fR~~l----~~~~vl~~~~-~~cL~~y~~~~~~~~~~~i~~l~~~~~~~r~~~r~l~ 77 (141)
T d1n0ea_ 3 GHMLLGTFNITLDAKNRISLPAKLRAFF----EGSIVINRGF-ENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIF 77 (141)
T ss_dssp TSCBCSEEEECCCTTSEEECCSHHHHHC----CSEEECCCCT-TSCCEEBCHHHHHHHHHHHTTSCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCEEECHHHHHHH----CCCEEEECCC-CCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7215240333576777268519999873----8947996487-7841023898928998762135732288899999987
Q ss_pred HHHHHCCCCCCCEEECCHHHHHHCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 11111221786147519899987099853999941998996298999999999599999988439
Q gi|254781106|r 81 GGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEESRNEYCRQLLQK 145 (145)
Q Consensus 81 ~~a~~~~~D~~GRi~ip~~lr~~agi~~ev~~vG~g~~fEIW~~~~~~~~~~~~~~~~~~~l~e~ 145 (145)
++|+++++|+||||+||+.||++|||+++|+|||+|++||||||++|+++.+++. + .++++|+
T Consensus 78 ~~a~~~~~D~~GRi~lp~~Lr~~a~l~~~vv~vG~g~~fEIW~~~~~~~~~~~~~-~-~~~laE~ 140 (141)
T d1n0ea_ 78 ANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSE-S-LETVAER 140 (141)
T ss_dssp TTCCEEECCTTSEEECCHHHHHHTTCCSCEEEEECBSCEEEEEHHHHHHHHHSSC-C-HHHHHHT
T ss_pred HCCEEEEECCCCEEEECHHHHHHCCCCCCEEEEECCCEEEEECHHHHHHHHHHHH-H-HHHHHCC
T ss_conf 3150752256605960899998709998789994699999928899999986355-4-9987320
No 2
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=97.19 E-value=0.00012 Score=46.83 Aligned_cols=49 Identities=29% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHHHCCCCCCCEEECCHHHHHHCCCCCEEEE-EECCCEEEECCHHHHHHHHH
Q ss_conf 1111221786147519899987099853999-94199899629899999999
Q gi|254781106|r 82 GGIFLKMDSEGRILMTDFIRVFTGIENEVTF-VGRGNYFQLWNPQTFRKLQE 132 (145)
Q Consensus 82 ~a~~~~~D~~GRi~ip~~lr~~agi~~ev~~-vG~g~~fEIW~~~~~~~~~~ 132 (145)
+..+..+|+-|||.||..+|+.. ++.+++ .|..+++++|.++.|++..+
T Consensus 8 G~~~~~lD~KGRlsiPa~fR~~l--~~~~vl~~~~~~cL~~y~~~~~~~~~~ 57 (141)
T d1n0ea_ 8 GTFNITLDAKNRISLPAKLRAFF--EGSIVINRGFENCLEVRKPQDFQKYFE 57 (141)
T ss_dssp SEEEECCCTTSEEECCSHHHHHC--CSEEECCCCTTSCCEEBCHHHHHHHHH
T ss_pred EECCCCCCCCCCEEECHHHHHHH--CCCEEEECCCCCCHHHCCHHHHHHHHH
T ss_conf 40333576777268519999873--894799648778410238989289987
No 3
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=93.93 E-value=0.049 Score=30.85 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=11.7
Q ss_pred CCCCCCEEECCHHHHHHCCCC
Q ss_conf 217861475198999870998
Q gi|254781106|r 87 KMDSEGRILMTDFIRVFTGIE 107 (145)
Q Consensus 87 ~~D~~GRi~ip~~lr~~agi~ 107 (145)
.+|+.|||+||..+|.-.+|.
T Consensus 9 kiD~LGRiViPkElR~~L~I~ 29 (51)
T d1yfba1 9 KVDELGRVVIPIELRRTLGIA 29 (51)
T ss_dssp ECCTTCEEECCHHHHHHTTCC
T ss_pred EECCCCCEECCHHHHHHCCCC
T ss_conf 524688898209999765998
No 4
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=91.58 E-value=0.059 Score=30.33 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCCEECCCCCEEECHHHHHHHHHCCCCCEEECC
Q ss_conf 121056766271078899998524898499516
Q gi|254781106|r 8 VTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQ 40 (145)
Q Consensus 8 ~~~~lD~KGRi~iPa~fR~~L~~~~~~~lv~~~ 40 (145)
.-+++|+=||+.||...|+.|.-.....+-++.
T Consensus 6 ivRkiD~LGRiViPkElR~~L~I~~~d~lEifv 38 (51)
T d1yfba1 6 IVRKVDELGRVVIPIELRRTLGIAEKDALEIYV 38 (51)
T ss_dssp EEEECCTTCEEECCHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEECCCCCEECCHHHHHHCCCCCCCCEEEEE
T ss_conf 487524688898209999765998899589998
No 5
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=36.29 E-value=9.2 Score=16.85 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHCCCCCCCEEECCHHHHHHCCCCC-E---EEEEECCCEEEE
Q ss_conf 11122178614751989998709985-3---999941998996
Q gi|254781106|r 83 GIFLKMDSEGRILMTDFIRVFTGIEN-E---VTFVGRGNYFQL 121 (145)
Q Consensus 83 a~~~~~D~~GRi~ip~~lr~~agi~~-e---v~~vG~g~~fEI 121 (145)
...+++|=.| |.|.+.|.+.|||-- | |+=+-.|.+||=
T Consensus 15 VT~a~l~YeG-itID~~Ll~aa~i~p~E~V~V~N~~NG~Rf~T 56 (121)
T g1uhe.1 15 ITDANLNYIG-ITIDEDLAKLAKLREGMKVEIVDVNNGERFST 56 (121)
T ss_dssp CCEEETTCCC-CEEEHHHHHHTTCCTTCEEEEEETTTCCEEEE
T ss_pred EECCCCCEEE-EEECHHHHHHCCCCCCCEEEEEECCCCEEEEE
T ss_conf 8043563458-98899999775998898899999989938876
No 6
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.41 E-value=15 Score=15.60 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHCCCCCCCEEECCHHHHHHCCCCCEEEEEECCCEEEE--------CCHHHHHHHHHHHHH
Q ss_conf 11221786147519899987099853999941998996--------298999999999599
Q gi|254781106|r 84 IFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQL--------WNPQTFRKLQEESRN 136 (145)
Q Consensus 84 ~~~~~D~~GRi~ip~~lr~~agi~~ev~~vG~g~~fEI--------W~~~~~~~~~~~~~~ 136 (145)
..+.+...|++++-+...+...-+..++|+...+.-+| |+++.+.+..+.+.+
T Consensus 9 v~~~~~~dg~~vlDpt~~Ee~~~~~~~~~a~~~~~~~i~~~~~~g~~s~~~~~~~l~~a~~ 69 (89)
T d2nn6d2 9 VACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQA 69 (89)
T ss_dssp EEEEECTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEECCCHHHHHHCCEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999984986650889999731106789999858983899852577499999999999999
No 7
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}
Probab=21.40 E-value=24 Score=14.26 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHCCCCCCCEEECCHHHHHHCCCCC--E--EEEEECCCEEEE
Q ss_conf 11122178614751989998709985--3--999941998996
Q gi|254781106|r 83 GIFLKMDSEGRILMTDFIRVFTGIEN--E--VTFVGRGNYFQL 121 (145)
Q Consensus 83 a~~~~~D~~GRi~ip~~lr~~agi~~--e--v~~vG~g~~fEI 121 (145)
..++++|=.|-|.|.+.|.+.|||-- . |+=+-.|.+|+=
T Consensus 15 VT~a~l~YeGSitID~~Lm~aagi~~~EkV~V~Nv~NG~Rf~T 57 (118)
T d1ppya_ 15 VTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFST 57 (118)
T ss_dssp CCCCSSCCTTSEEEEHHHHHHHTCCTTCEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEE
T ss_conf 8044532038889999999875999898999999999938998
No 8
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=19.94 E-value=18 Score=15.05 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHCCCCCCCEEE
Q ss_conf 9863111112217861475
Q gi|254781106|r 77 LLVHGGGIFLKMDSEGRIL 95 (145)
Q Consensus 77 r~~~~~a~~~~~D~~GRi~ 95 (145)
+..+..+..++.|.+|||+
T Consensus 34 ~~aL~~~p~tEyD~~G~iv 52 (60)
T d1s6la1 34 AAVLEQATSTEYDKDGNII 52 (60)
T ss_dssp HHHHTTCCSSCEETTTEEC
T ss_pred HHHHHHCCCCEECCCCCEE
T ss_conf 9999858886166899788
No 9
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]}
Probab=17.49 E-value=29 Score=13.81 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=21.0
Q ss_pred ECCCCCEEECHHHHHHH--HHCCCCCEEECCCCCCCEEECCCHHH
Q ss_conf 56766271078899998--52489849951656644130452367
Q gi|254781106|r 12 IDSKGRVSVPFVFRTIL--AQRCITDLYCFQDFFFPAISVGNSDL 54 (145)
Q Consensus 12 lD~KGRi~iPa~fR~~L--~~~~~~~lv~~~~~~~~~l~~~~~~~ 54 (145)
+..++.-.+|+=.|.-+ .+.....++++.- ...-++|..+.
T Consensus 5 ~k~~~~~~ltPm~~qY~~~K~~~~d~Ivl~qv--G~FYE~Y~~Da 47 (120)
T d1ewqa4 5 LKGEGPGPLPPLLQQYVELRDQYPDYLLLFQV--GDFYECFGEDA 47 (120)
T ss_dssp CCCSCCSCCCHHHHHHHHHHHHCTTSEEEEEE--TTEEEEEHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE--CCEEEECCCHH
T ss_conf 46778878898999999999878996999982--88989754359
No 10
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.17 E-value=22 Score=14.46 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCCCCCEEECCHHHHHHCCC
Q ss_conf 21786147519899987099
Q gi|254781106|r 87 KMDSEGRILMTDFIRVFTGI 106 (145)
Q Consensus 87 ~~D~~GRi~ip~~lr~~agi 106 (145)
-=|+.|-|.||+.|+.|.|-
T Consensus 285 ~q~~dG~v~iP~~L~py~~~ 304 (311)
T d1seta2 285 HQLQDGRVRVPQALIPYMGK 304 (311)
T ss_dssp HBCTTSCEECCGGGHHHHSS
T ss_pred CCCCCCCEECCHHHHHHCCC
T ss_conf 60899858588344323498
Done!