RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ
[Candidatus Liberibacter asiaticus str. psy62]
         (145 letters)



>gnl|CDD|178978 PRK00326, PRK00326, cell division protein MraZ; Reviewed.
          Length = 139

 Score =  138 bits (351), Expect = 5e-34
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 3   RFLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQD-----FFFPAISVGNSDLLEY 57
            F       +D+KGR+S+P  FR  L +     L   +        +P          E 
Sbjct: 1   MFRGEYAHNLDAKGRLSIPAKFRDELGEEADGRLVITKGLDGCLLLYPL------PEWEK 54

Query: 58  FEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGN 117
            E+K+A     + +A     L+ GG + +++D +GRIL+   +R + G+E EV  VG+GN
Sbjct: 55  IEEKLAALPLTNPEARAFQRLLLGGAVEVELDKQGRILIPPNLREYAGLEKEVVLVGQGN 114

Query: 118 YFQLWNPQTFRKLQEESRNEYCRQL 142
            F++W+P+ +     E+  ++   L
Sbjct: 115 KFEIWDPEAWEAYLAEAEEDFADDL 139


>gnl|CDD|129345 TIGR00242, TIGR00242, mraZ protein.  Members of this family contain
           two tandem copies of a domain described by pfam02381.
           This protein often is found with other genes of the dcw
           (division cell wall) gene cluster, including mraW, ftsI,
           murE, murF, ftsW, murG, etc.
          Length = 142

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)

Query: 1   MSRFLSNVTQKIDSKGRVSVPFVFRT-ILAQRCITDLYCFQDFFFPAISVGNSDLLEYFE 59
           M R  +NVT  +D+KGR+SVP  +R  +L              F   + +      E  E
Sbjct: 1   MFRGATNVT--LDAKGRISVPAKYRAFLLESVVTNRG------FENCLLLYPLQEWEKIE 52

Query: 60  QKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYF 119
           QK+           +L  L+ G     +MD+ GR+L+ + +R    +E E+  +G+ N F
Sbjct: 53  QKLNALPSTQKDTRRLQRLIFGHATECEMDTAGRVLIANNLRNHAKLEKEIVLIGQFNKF 112

Query: 120 QLWNPQTFRKLQEES 134
           ++W+   + +   E 
Sbjct: 113 EIWDKVLWEQYLAED 127


>gnl|CDD|181484 PRK08577, PRK08577, hypothetical protein; Provisional.
          Length = 136

 Score = 28.4 bits (64), Expect = 0.77
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 11 KIDSKGRVSVPFVFRTIL 28
          K+DSKGR+++P   R  L
Sbjct: 8  KVDSKGRITIPLEIREAL 25


>gnl|CDD|139055 PRK12546, PRK12546, RNA polymerase sigma factor; Provisional.
          Length = 188

 Score = 27.9 bits (62), Expect = 0.94
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 79  VHGGGIFLKMDSEGRILMTDFIRVFTGIENE----VTFVGRGNY 118
           VH   + +K   +GR+ M+DF   F  + +E    +  VG   +
Sbjct: 87  VHAASLAVKPAHDGRLAMSDFRAAFAQLPDEQREALILVGASGF 130


>gnl|CDD|181560 PRK08815, PRK08815, GTP cyclohydrolase; Provisional.
          Length = 375

 Score = 25.9 bits (57), Expect = 3.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 81  GGGIFLKMDSEGR 93
           GGG+ L +D EGR
Sbjct: 253 GGGVLLYLDQEGR 265


>gnl|CDD|151551 pfam11107, FANCF, Fanconi anemia group F protein (FANCF).  FANCF
           regulates its own expression by methylation at both mRNA
           and protein levels. Methylation-induced inactivation of
           FANCF has an important role on the occurrence of ovarian
           cancers by disrupting the FA-BRCA pathway.
          Length = 343

 Score = 25.5 bits (56), Expect = 4.9
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 109 EVTFVGRGNYFQLWNPQTFRKLQEESRNEYCRQLLQK 145
           EV  + R ++   W+P T R+  + +   Y  Q+ ++
Sbjct: 13  EVLALSRSDHVATWDPATVRRAFQWAL--YFEQVHRR 47


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0740    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,339,240
Number of extensions: 137673
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 25
Length of query: 145
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 61
Effective length of database: 4,179,401
Effective search space: 254943461
Effective search space used: 254943461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (23.8 bits)