RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ
[Candidatus Liberibacter asiaticus str. psy62]
(145 letters)
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis
protein, structural genomics, BSGC structure funded by
NIH; 2.70A {Mycoplasma pneumoniae} (A:1-152)
Length = 152
Score = 109 bits (273), Expect = 2e-25
Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 4 FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63
L +D+K R+S+P R + + F + V + + ++
Sbjct: 27 LLGTFNITLDAKNRISLPAKLRAFFEGS----IVINRGFE-NCLEVRKPQDFQKYFEQFN 81
Query: 64 EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123
+ L L+ F+ +D+ GR+L+ + + ++ E+ +G+ ++ ++W+
Sbjct: 82 SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 141
Query: 124 PQTFRKLQEES 134
+ + S
Sbjct: 142 KKLYEDYLANS 152
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A* (A:68-230,A:283-320)
Length = 201
Score = 30.1 bits (67), Expect = 0.14
Identities = 13/142 (9%), Positives = 27/142 (19%), Gaps = 10/142 (7%)
Query: 2 SRFLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCF----QDFFFPAISVGNSDLLEY 57
I + + + L I+ + F + +
Sbjct: 9 DFIEETSNDLIKNIDNKDIISEYAVRLPVNIISKILGIPDSDMPLFKLWSDYIIGNKRDE 68
Query: 58 FEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIR------VFTGIENEVT 111
+ + S + + R L D + G E
Sbjct: 69 NFNYVNNRMVSRLLEIFKSDSHGIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTN 128
Query: 112 FVGRGNYFQLWNPQTFRKLQEE 133
+G NP +
Sbjct: 129 LIGNMIRVIDENPDIIDDALKN 150
>2fs2_A Phenylacetic acid degradation protein PAAI; operon,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} (A:)
Length = 151
Score = 27.6 bits (61), Expect = 0.79
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 79 VHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFV 113
HGG +F D+ + F+
Sbjct: 52 CHGGQLFSLADTAFAYACNSQGLAAVASACTIDFL 86
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Rhodococcus SP} (A:)
Length = 216
Score = 27.3 bits (60), Expect = 0.97
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 79 VHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFV 113
VHGG L +D + + + +
Sbjct: 129 VHGGVSALLLDHVLGVANAWGGKAGXTAQLSTRYH 163
>1xt8_A Putative amino-acid transporter periplasmic solute-binding
protein; ABC transport, cysteine uptake, spine,
structural genomics; 2.00A {Campylobacter jejuni}
(A:1-134,A:224-292)
Length = 203
Score = 26.6 bits (58), Expect = 1.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 40 QDFFFPAISVGNSDLLEYFEQKIAE 64
+D PA+ G+ +L E+ + I +
Sbjct: 136 KDVIAPAVKKGDKELKEFIDNLIIK 160
>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase;
HET: DNA GMP; 2.21A {Enterobacteria phage RB69}
(A:104-338)
Length = 235
Score = 26.4 bits (57), Expect = 1.6
Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 10/94 (10%)
Query: 53 DLLEYFEQKIAEYNP----------FSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRV 102
+LL + + P F I + G K S R I
Sbjct: 93 ELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIEN 152
Query: 103 FTGIENEVTFVGRGNYFQLWNPQTFRKLQEESRN 136
G +T G + + F + S +
Sbjct: 153 MYGSREIITLFGISVLDYIDLYKKFSFTNQPSYS 186
>2pim_A Phenylacetic acid degradation-related protein; YP_298971.1,
thioesterase superfamily, structural genomics; 2.20A
{Ralstonia eutropha JMP134} (A:)
Length = 141
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 79 VHGGGIFLKMDSEGRILMTDFI---RVFTGIENEVTFV 113
V GG + +D L+T + + + ++F+
Sbjct: 56 VQGGXLGAXLDDVTAXLVTATLEDGASCSTLNLNLSFL 93
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} (A:92-300,A:353-419)
Length = 276
Score = 24.9 bits (53), Expect = 4.2
Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 53 DLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTF 112
+ L + E ++ + L++L+ ++ S ++ + G + +
Sbjct: 113 EGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRL-STKELVALVGAIIAAGTDTTIYL 171
Query: 113 VGRGNYFQLWNPQTFRKLQEE 133
+ L +P+ ++ E
Sbjct: 172 IAFAVLNLLRSPEALELVKAE 192
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase,
oxidoreductase, metal binding protein; HET: HEM; 2.47A
{Micromonospora echinospora} (A:53-278,A:345-397)
Length = 279
Score = 25.0 bits (53), Expect = 4.4
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 87 KMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133
+ S I+ T +FTG E + VG L +P L+
Sbjct: 164 GLMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR 210
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter
pylori} (A:)
Length = 457
Score = 24.9 bits (54), Expect = 4.9
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 39 FQDFFFPAISVGNSDLLEYFEQKIAEYN 66
+ + + N +L E F++++A YN
Sbjct: 349 YGNVSTGTNGISNVNLEEQFKERLALYN 376
>1t2b_A P450CIN; B'-helix, loop, unknown function; HET: HEM CNL;
1.70A {Citrobacter braakii} PDB: 3bdz_A* 3be0_A*
(A:104-276,A:324-397)
Length = 247
Score = 24.8 bits (53), Expect = 5.5
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 87 KMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133
+ SE ++ I + GI+N F+ + W+ + R+L
Sbjct: 111 ESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAH 157
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold,
structural genomics, montreal- kingston bacterial
structural genomics initiative; 1.70A {Bacillus
subtilis} (A:)
Length = 174
Score = 24.5 bits (52), Expect = 6.2
Identities = 11/115 (9%), Positives = 24/115 (20%), Gaps = 4/115 (3%)
Query: 13 DSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQA 72
KG V + T C D + + F P ++
Sbjct: 30 SLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKK 89
Query: 73 NQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTF 127
+ + + ++ F I + G + +
Sbjct: 90 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP----EGEDQVIHQSSFY 140
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution,
ribosomal protein; NMR {Giardia lamblia atcc 50803}
(A:)
Length = 69
Score = 24.3 bits (52), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 67 PFSIQANQLSLLVHGGGIFLKMDSEGRIL 95
P +A+QLS L+ G+ + ++GR+L
Sbjct: 17 PAGARASQLSNLLSSSGMAFSLHTQGRVL 45
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.327 0.142 0.423
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,089,384
Number of extensions: 45234
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 21
Length of query: 145
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 65
Effective length of database: 2,251,649
Effective search space: 146357185
Effective search space used: 146357185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.8 bits)