RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ [Candidatus Liberibacter asiaticus str. psy62] (145 letters) >1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} (A:1-152) Length = 152 Score = 109 bits (273), Expect = 2e-25 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 4 FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63 L +D+K R+S+P R + + F + V + + ++ Sbjct: 27 LLGTFNITLDAKNRISLPAKLRAFFEGS----IVINRGFE-NCLEVRKPQDFQKYFEQFN 81 Query: 64 EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123 + L L+ F+ +D+ GR+L+ + + ++ E+ +G+ ++ ++W+ Sbjct: 82 SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 141 Query: 124 PQTFRKLQEES 134 + + S Sbjct: 142 KKLYEDYLANS 152 >2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A* (A:68-230,A:283-320) Length = 201 Score = 30.1 bits (67), Expect = 0.14 Identities = 13/142 (9%), Positives = 27/142 (19%), Gaps = 10/142 (7%) Query: 2 SRFLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCF----QDFFFPAISVGNSDLLEY 57 I + + + L I+ + F + + Sbjct: 9 DFIEETSNDLIKNIDNKDIISEYAVRLPVNIISKILGIPDSDMPLFKLWSDYIIGNKRDE 68 Query: 58 FEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIR------VFTGIENEVT 111 + + S + + R L D + G E Sbjct: 69 NFNYVNNRMVSRLLEIFKSDSHGIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTN 128 Query: 112 FVGRGNYFQLWNPQTFRKLQEE 133 +G NP + Sbjct: 129 LIGNMIRVIDENPDIIDDALKN 150 >2fs2_A Phenylacetic acid degradation protein PAAI; operon, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:) Length = 151 Score = 27.6 bits (61), Expect = 0.79 Identities = 6/35 (17%), Positives = 10/35 (28%) Query: 79 VHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFV 113 HGG +F D+ + F+ Sbjct: 52 CHGGQLFSLADTAFAYACNSQGLAAVASACTIDFL 86 >2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Rhodococcus SP} (A:) Length = 216 Score = 27.3 bits (60), Expect = 0.97 Identities = 6/35 (17%), Positives = 11/35 (31%) Query: 79 VHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFV 113 VHGG L +D + + + + Sbjct: 129 VHGGVSALLLDHVLGVANAWGGKAGXTAQLSTRYH 163 >1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} (A:1-134,A:224-292) Length = 203 Score = 26.6 bits (58), Expect = 1.5 Identities = 7/25 (28%), Positives = 14/25 (56%) Query: 40 QDFFFPAISVGNSDLLEYFEQKIAE 64 +D PA+ G+ +L E+ + I + Sbjct: 136 KDVIAPAVKKGDKELKEFIDNLIIK 160 >1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase; HET: DNA GMP; 2.21A {Enterobacteria phage RB69} (A:104-338) Length = 235 Score = 26.4 bits (57), Expect = 1.6 Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 10/94 (10%) Query: 53 DLLEYFEQKIAEYNP----------FSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRV 102 +LL + + P F I + G K S R I Sbjct: 93 ELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIEN 152 Query: 103 FTGIENEVTFVGRGNYFQLWNPQTFRKLQEESRN 136 G +T G + + F + S + Sbjct: 153 MYGSREIITLFGISVLDYIDLYKKFSFTNQPSYS 186 >2pim_A Phenylacetic acid degradation-related protein; YP_298971.1, thioesterase superfamily, structural genomics; 2.20A {Ralstonia eutropha JMP134} (A:) Length = 141 Score = 26.0 bits (57), Expect = 2.3 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%) Query: 79 VHGGGIFLKMDSEGRILMTDFI---RVFTGIENEVTFV 113 V GG + +D L+T + + + ++F+ Sbjct: 56 VQGGXLGAXLDDVTAXLVTATLEDGASCSTLNLNLSFL 93 >1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} (A:92-300,A:353-419) Length = 276 Score = 24.9 bits (53), Expect = 4.2 Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 53 DLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTF 112 + L + E ++ + L++L+ ++ S ++ + G + + Sbjct: 113 EGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRL-STKELVALVGAIIAAGTDTTIYL 171 Query: 113 VGRGNYFQLWNPQTFRKLQEE 133 + L +P+ ++ E Sbjct: 172 IAFAVLNLLRSPEALELVKAE 192 >3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreductase, metal binding protein; HET: HEM; 2.47A {Micromonospora echinospora} (A:53-278,A:345-397) Length = 279 Score = 25.0 bits (53), Expect = 4.4 Identities = 12/47 (25%), Positives = 18/47 (38%) Query: 87 KMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133 + S I+ T +FTG E + VG L +P L+ Sbjct: 164 GLMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHPDQLDLLRRR 210 >2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori} (A:) Length = 457 Score = 24.9 bits (54), Expect = 4.9 Identities = 7/28 (25%), Positives = 15/28 (53%) Query: 39 FQDFFFPAISVGNSDLLEYFEQKIAEYN 66 + + + N +L E F++++A YN Sbjct: 349 YGNVSTGTNGISNVNLEEQFKERLALYN 376 >1t2b_A P450CIN; B'-helix, loop, unknown function; HET: HEM CNL; 1.70A {Citrobacter braakii} PDB: 3bdz_A* 3be0_A* (A:104-276,A:324-397) Length = 247 Score = 24.8 bits (53), Expect = 5.5 Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 87 KMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133 + SE ++ I + GI+N F+ + W+ + R+L Sbjct: 111 ESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAH 157 >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal- kingston bacterial structural genomics initiative; 1.70A {Bacillus subtilis} (A:) Length = 174 Score = 24.5 bits (52), Expect = 6.2 Identities = 11/115 (9%), Positives = 24/115 (20%), Gaps = 4/115 (3%) Query: 13 DSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQA 72 KG V + T C D + + F P ++ Sbjct: 30 SLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKK 89 Query: 73 NQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTF 127 + + + ++ F I + G + + Sbjct: 90 FAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP----EGEDQVIHQSSFY 140 >2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803} (A:) Length = 69 Score = 24.3 bits (52), Expect = 7.6 Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 67 PFSIQANQLSLLVHGGGIFLKMDSEGRIL 95 P +A+QLS L+ G+ + ++GR+L Sbjct: 17 PAGARASQLSNLLSSSGMAFSLHTQGRVL 45 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.142 0.423 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,089,384 Number of extensions: 45234 Number of successful extensions: 211 Number of sequences better than 10.0: 1 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 21 Length of query: 145 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 65 Effective length of database: 2,251,649 Effective search space: 146357185 Effective search space used: 146357185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 50 (23.8 bits)