RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ
[Candidatus Liberibacter asiaticus str. psy62]
(145 letters)
>1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein,
structural genomics, BSGC structure funded by NIH; 2.70A
{Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A
1n0g_A
Length = 166
Score = 101 bits (254), Expect = 5e-23
Identities = 20/133 (15%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 4 FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63
L +D+K R+S+P R + + F + V + + ++
Sbjct: 27 LLGTFNITLDAKNRISLPAKLRAFFEGS----IVINRGFE-NCLEVRKPQDFQKYFEQFN 81
Query: 64 EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123
+ L L+ F+ +D+ GR+L+ + + ++ E+ +G+ ++ ++W+
Sbjct: 82 SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 141
Query: 124 PQTFRKLQEESRN 136
+ + S +
Sbjct: 142 KKLYEDYLANSES 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.4 bits (76), Expect = 0.019
Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 71/153 (46%)
Query: 3 RFLSNVTQKIDSKGRVSVPFVFRTIL----AQRCITDLYCFQDFFFPAISVGNSDLLEYF 58
RFL V+ P F + L + DL + F A D+
Sbjct: 419 RFLP-----------VASP--FHSHLLVPASDLINKDLVK-NNVSFNA-----KDI---- 455
Query: 59 EQKIAEYNPF------SIQANQLSLLV-------------------H------GG----G 83
+I Y+ F + + +V H GG G
Sbjct: 456 --QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 84 IFLKMDSEGR----ILMTDFIRVFTGIENEVTF 112
+ + +G I+ + +++ F
Sbjct: 514 VLTHRNKDGTGVRVIVAGT---LDINPDDDYGF 543
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 28.1 bits (62), Expect = 0.81
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Query: 24 FRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGG 83
F F + ++ IA + L ++
Sbjct: 152 FLRWSDDLVTFLSSHVSQEDFQITMDAFAAYNDFTRATIAARRAD--PTDDLVSVLVSSE 209
Query: 84 IFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133
+ + S+ ++M + + G E + G L N + LQ +
Sbjct: 210 VDGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD 259
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.45A
{Rhodopseudomonas palustris}
Length = 392
Score = 26.8 bits (58), Expect = 2.1
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 43 FFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRV 102
+ P SV N++L+E F +A +N + + G I S ++FI
Sbjct: 33 YTPPDSVSNAELVEAFNTYVANFNAANKAR------IEAGEIEPLQPSS-----SEFIEK 81
Query: 103 FTGIEN 108
+GI++
Sbjct: 82 ASGIKS 87
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET:
NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 26.6 bits (58), Expect = 2.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 22 FVFRTILAQRCITDLYCFQDFFFPAISV 49
F+ T ++ C+T L +D F +
Sbjct: 10 FILFTSVSGECVTQLL--KDTCFEGGDI 35
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.4 bits (57), Expect = 2.8
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 124 PQTFRKLQEESR 135
P++ RK +EE R
Sbjct: 84 PESIRKWREEQR 95
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A*
Length = 258
Score = 25.8 bits (55), Expect = 4.1
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 48 SVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIR 101
+ + + LE + Y + ++VHGGG + +G L
Sbjct: 13 LLDSEEALERLFSALVNYRE---SHQRPLVIVHGGGCVVDELMKGLNLPVKKKN 63
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter
pylori}
Length = 457
Score = 24.9 bits (54), Expect = 6.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 46 AISVGNSDLLEYFEQKIAEYN 66
+ N +L E F++++A YN
Sbjct: 356 TNGISNVNLEEQFKERLALYN 376
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
LYS; 2.54A {Synechocystis}
Length = 600
Score = 24.9 bits (54), Expect = 7.0
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 19/83 (22%)
Query: 39 FQDFFFPAISVGNSDLL-----EYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGR 93
Q+ PAIS+ + + E+ +I E P ++ + +
Sbjct: 85 LQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHH--------------LREGKV 130
Query: 94 ILMTDFIRVFTGIENEVTFVGRG 116
+++ F + + E+T +GRG
Sbjct: 131 VVVAGFQGISSVEHLEITTLGRG 153
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 24.6 bits (54), Expect = 8.4
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 115 RGNYFQLWNPQTFRKLQEESRNE 137
+ W LQ+ N+
Sbjct: 783 KSGDRHGWEGGVIHTLQQAVTND 805
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.142 0.423
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,235,841
Number of extensions: 52553
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 12
Length of query: 145
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 61
Effective length of database: 3,656,734
Effective search space: 223060774
Effective search space used: 223060774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)