RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781106|ref|YP_003065519.1| cell division protein MraZ [Candidatus Liberibacter asiaticus str. psy62] (145 letters) >1n0e_A Protein MRAZ; cell division and cell WALL biosynthesis protein, structural genomics, BSGC structure funded by NIH; 2.70A {Mycoplasma pneumoniae} SCOP: b.129.1.2 PDB: 1n0f_A 1n0g_A Length = 166 Score = 101 bits (254), Expect = 5e-23 Identities = 20/133 (15%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 4 FLSNVTQKIDSKGRVSVPFVFRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIA 63 L +D+K R+S+P R + + F + V + + ++ Sbjct: 27 LLGTFNITLDAKNRISLPAKLRAFFEGS----IVINRGFE-NCLEVRKPQDFQKYFEQFN 81 Query: 64 EYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWN 123 + L L+ F+ +D+ GR+L+ + + ++ E+ +G+ ++ ++W+ Sbjct: 82 SFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWD 141 Query: 124 PQTFRKLQEESRN 136 + + S + Sbjct: 142 KKLYEDYLANSES 154 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.4 bits (76), Expect = 0.019 Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 71/153 (46%) Query: 3 RFLSNVTQKIDSKGRVSVPFVFRTIL----AQRCITDLYCFQDFFFPAISVGNSDLLEYF 58 RFL V+ P F + L + DL + F A D+ Sbjct: 419 RFLP-----------VASP--FHSHLLVPASDLINKDLVK-NNVSFNA-----KDI---- 455 Query: 59 EQKIAEYNPF------SIQANQLSLLV-------------------H------GG----G 83 +I Y+ F + + +V H GG G Sbjct: 456 --QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513 Query: 84 IFLKMDSEGR----ILMTDFIRVFTGIENEVTF 112 + + +G I+ + +++ F Sbjct: 514 VLTHRNKDGTGVRVIVAGT---LDINPDDDYGF 543 >2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis} Length = 398 Score = 28.1 bits (62), Expect = 0.81 Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 2/110 (1%) Query: 24 FRTILAQRCITDLYCFQDFFFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGG 83 F F + ++ IA + L ++ Sbjct: 152 FLRWSDDLVTFLSSHVSQEDFQITMDAFAAYNDFTRATIAARRAD--PTDDLVSVLVSSE 209 Query: 84 IFLKMDSEGRILMTDFIRVFTGIENEVTFVGRGNYFQLWNPQTFRKLQEE 133 + + S+ ++M + + G E + G L N + LQ + Sbjct: 210 VDGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQRD 259 >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Length = 392 Score = 26.8 bits (58), Expect = 2.1 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 43 FFPAISVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIRV 102 + P SV N++L+E F +A +N + + G I S ++FI Sbjct: 33 YTPPDSVSNAELVEAFNTYVANFNAANKAR------IEAGEIEPLQPSS-----SEFIEK 81 Query: 103 FTGIEN 108 +GI++ Sbjct: 82 ASGIKS 87 >2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625 Score = 26.6 bits (58), Expect = 2.2 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%) Query: 22 FVFRTILAQRCITDLYCFQDFFFPAISV 49 F+ T ++ C+T L +D F + Sbjct: 10 FILFTSVSGECVTQLL--KDTCFEGGDI 35 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 26.4 bits (57), Expect = 2.8 Identities = 6/12 (50%), Positives = 9/12 (75%) Query: 124 PQTFRKLQEESR 135 P++ RK +EE R Sbjct: 84 PESIRKWREEQR 95 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* Length = 258 Score = 25.8 bits (55), Expect = 4.1 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 48 SVGNSDLLEYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGRILMTDFIR 101 + + + LE + Y + ++VHGGG + +G L Sbjct: 13 LLDSEEALERLFSALVNYRE---SHQRPLVIVHGGGCVVDELMKGLNLPVKKKN 63 >2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori} Length = 457 Score = 24.9 bits (54), Expect = 6.8 Identities = 7/21 (33%), Positives = 13/21 (61%) Query: 46 AISVGNSDLLEYFEQKIAEYN 66 + N +L E F++++A YN Sbjct: 356 TNGISNVNLEEQFKERLALYN 376 >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 Score = 24.9 bits (54), Expect = 7.0 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 19/83 (22%) Query: 39 FQDFFFPAISVGNSDLL-----EYFEQKIAEYNPFSIQANQLSLLVHGGGIFLKMDSEGR 93 Q+ PAIS+ + + E+ +I E P ++ + + Sbjct: 85 LQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHH--------------LREGKV 130 Query: 94 ILMTDFIRVFTGIENEVTFVGRG 116 +++ F + + E+T +GRG Sbjct: 131 VVVAGFQGISSVEHLEITTLGRG 153 >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479 Score = 24.6 bits (54), Expect = 8.4 Identities = 4/23 (17%), Positives = 7/23 (30%) Query: 115 RGNYFQLWNPQTFRKLQEESRNE 137 + W LQ+ N+ Sbjct: 783 KSGDRHGWEGGVIHTLQQAVTND 805 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.327 0.142 0.423 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,235,841 Number of extensions: 52553 Number of successful extensions: 239 Number of sequences better than 10.0: 1 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 12 Length of query: 145 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 61 Effective length of database: 3,656,734 Effective search space: 223060774 Effective search space used: 223060774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 52 (24.5 bits)