Query gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 542
No_of_seqs 157 out of 3541
Neff 7.5
Searched_HMMs 39220
Date Mon May 30 06:00:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781107.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03085 PGM1 Phosphoglucomutas 100.0 0 0 971.3 47.5 537 5-542 2-548 (548)
2 PRK07564 phosphoglucomutase; V 100.0 0 0 859.5 47.1 490 5-523 31-541 (544)
3 PTZ00150 phosphoglucomutase; P 100.0 0 0 802.8 42.1 496 11-522 46-581 (593)
4 cd05801 PGM_like3 This bacteri 100.0 0 0 799.4 44.5 486 6-520 13-522 (522)
5 cd05800 PGM_like2 This PGM-lik 100.0 0 0 743.1 45.2 442 14-503 1-447 (461)
6 cd05799 PGM2 This CD includes 100.0 0 0 742.3 43.0 454 13-519 1-485 (487)
7 KOG0625 consensus 100.0 0 0 729.8 41.0 539 3-542 5-558 (558)
8 cd05803 PGM_like4 This PGM-lik 100.0 0 0 686.9 38.6 436 15-509 1-440 (445)
9 COG1109 {ManB} Phosphomannomut 100.0 0 0 671.4 45.2 437 12-507 6-447 (464)
10 TIGR01132 pgm phosphoglucomuta 100.0 0 0 691.8 28.8 490 6-524 32-552 (553)
11 cd03087 PGM_like1 This archaea 100.0 0 0 671.0 42.4 423 16-504 2-426 (439)
12 TIGR01455 glmM phosphoglucosam 100.0 0 0 679.1 35.2 423 16-503 1-434 (450)
13 cd05805 MPG1_transferase GTP-m 100.0 0 0 672.2 40.3 429 16-507 2-431 (441)
14 COG0033 Pgm Phosphoglucomutase 100.0 0 0 683.9 29.7 496 4-527 6-523 (524)
15 cd03089 PMM_PGM The phosphoman 100.0 0 0 664.4 41.9 428 16-507 2-433 (443)
16 cd05802 GlmM GlmM is a bacteri 100.0 0 0 664.6 38.8 419 16-504 2-424 (434)
17 PRK10887 glmM phosphoglucosami 100.0 0 0 663.8 39.1 437 12-521 3-443 (445)
18 PRK09542 manB phosphomannomuta 100.0 0 0 655.7 40.9 436 18-520 3-442 (445)
19 cd03088 ManB ManB is a bacteri 100.0 0 0 648.9 40.3 433 15-506 1-451 (459)
20 KOG1220 consensus 100.0 0 0 620.3 35.4 504 13-532 59-600 (607)
21 cd03084 phosphohexomutase The 100.0 0 0 568.3 32.8 351 73-519 2-354 (355)
22 cd03086 PGM3 PGM3 (phosphogluc 100.0 0 0 390.7 26.2 369 102-508 34-504 (513)
23 PTZ00302 N-acetylglucosamine-p 100.0 1.6E-39 3.9E-44 274.7 28.6 264 204-509 246-589 (604)
24 pfam02878 PGM_PMM_I Phosphoglu 100.0 5.2E-35 1.3E-39 245.4 15.0 130 14-149 2-134 (138)
25 KOG2537 consensus 99.9 2.8E-21 7.1E-26 156.6 22.2 357 50-509 125-527 (539)
26 pfam02880 PGM_PMM_III Phosphog 99.9 2.6E-22 6.6E-27 163.3 10.5 109 293-406 2-111 (111)
27 pfam02879 PGM_PMM_II Phosphogl 99.9 1.8E-21 4.6E-26 157.8 9.0 103 182-289 1-103 (103)
28 PTZ00302 N-acetylglucosamine-p 99.1 6.4E-11 1.6E-15 89.6 4.7 44 101-147 71-114 (604)
29 cd03086 PGM3 PGM3 (phosphogluc 99.0 4.5E-10 1.2E-14 84.1 5.0 62 50-115 103-164 (513)
30 pfam00408 PGM_PMM_IV Phosphogl 98.6 2.2E-08 5.6E-13 73.2 3.7 32 468-502 24-55 (71)
31 KOG2537 consensus 97.2 0.00045 1.2E-08 45.3 4.1 34 101-137 57-90 (539)
32 COG0033 Pgm Phosphoglucomutase 94.7 0.042 1.1E-06 32.6 3.8 50 50-99 25-76 (524)
33 cd03084 phosphohexomutase The 93.7 0.15 3.8E-06 29.0 4.9 28 15-42 1-28 (355)
34 TIGR02407 ectoine_ectB diamino 90.9 1.1 2.9E-05 23.3 7.9 125 325-498 218-391 (413)
35 COG0191 Fba Fructose/tagatose 87.5 2 5.2E-05 21.7 6.7 97 34-149 27-128 (286)
36 PRK02759 bifunctional phosphor 82.8 1.2 3.1E-05 23.1 2.9 59 327-405 142-200 (201)
37 TIGR01361 DAHP_synth_Bsub phos 82.8 1 2.6E-05 23.6 2.5 59 182-253 172-237 (262)
38 KOG2451 consensus 78.8 3.3 8.5E-05 20.3 4.0 54 297-351 201-256 (503)
39 TIGR01859 fruc_bis_ald_ fructo 77.7 4.9 0.00012 19.2 9.2 107 23-148 14-133 (339)
40 PRK03692 putative UDP-N-acetyl 75.8 5.5 0.00014 18.9 6.7 69 58-148 89-158 (246)
41 TIGR01780 SSADH succinic semia 73.7 4 0.0001 19.8 3.3 51 60-114 130-186 (454)
42 TIGR00955 3a01204 Pigment prec 68.8 4 0.0001 19.7 2.4 70 38-119 214-286 (671)
43 COG0124 HisS Histidyl-tRNA syn 68.3 2.9 7.4E-05 20.6 1.6 63 66-147 25-92 (429)
44 PRK09414 glutamate dehydrogena 67.5 8.4 0.00021 17.7 6.9 31 204-236 229-259 (446)
45 pfam02005 TRM N2,N2-dimethylgu 67.3 8.5 0.00022 17.7 3.9 23 323-345 225-247 (375)
46 TIGR00551 nadB L-aspartate oxi 65.8 7.8 0.0002 17.9 3.4 106 229-344 230-349 (546)
47 cd01088 MetAP2 Methionine Amin 65.5 7.4 0.00019 18.0 3.3 135 268-413 78-234 (291)
48 PRK02102 ornithine carbamoyltr 62.4 10 0.00027 17.1 4.9 64 203-278 154-219 (331)
49 TIGR00273 TIGR00273 iron-sulfu 61.1 11 0.00028 16.9 4.8 27 203-230 133-159 (450)
50 PRK08185 hypothetical protein; 59.7 12 0.0003 16.8 9.2 94 36-149 24-121 (283)
51 PRK09196 fructose-1,6-bisphosp 59.4 12 0.0003 16.7 7.1 77 36-115 29-110 (347)
52 TIGR01283 nifE nitrogenase MoF 58.8 8.1 0.00021 17.8 2.5 31 50-83 25-59 (470)
53 COG1069 AraB Ribulose kinase [ 55.9 13 0.00034 16.4 3.1 81 13-102 7-91 (544)
54 cd00453 FTBP_aldolase_II Fruct 55.0 14 0.00035 16.3 5.9 96 36-149 24-151 (340)
55 PRK06058 4-aminobutyrate amino 53.9 14 0.00037 16.1 5.5 19 475-497 404-422 (446)
56 TIGR01879 hydantase amidase, h 53.7 4.3 0.00011 19.5 0.4 51 65-126 33-85 (406)
57 COG1979 Uncharacterized oxidor 53.1 9.2 0.00024 17.4 2.0 44 50-98 30-75 (384)
58 PRK08622 galactose-6-phosphate 52.1 15 0.00039 16.0 7.3 19 317-335 81-99 (171)
59 PTZ00079 NADP-specific glutama 50.6 16 0.00042 15.8 6.6 17 293-309 192-208 (469)
60 PRK10834 hypothetical protein; 49.6 17 0.00043 15.7 6.9 98 14-115 49-151 (239)
61 PRK05568 flavodoxin; Provision 49.5 17 0.00043 15.7 5.1 35 50-84 2-37 (142)
62 cd02067 B12-binding B12 bindin 48.3 18 0.00045 15.6 6.2 54 54-113 7-60 (119)
63 PRK13399 fructose-1,6-bisphosp 47.8 18 0.00046 15.5 8.2 77 36-115 29-110 (347)
64 cd03364 TOPRIM_DnaG_primases T 47.4 18 0.00046 15.5 4.1 75 4-83 3-77 (79)
65 cd02070 corrinoid_protein_B12- 47.1 18 0.00047 15.5 9.7 63 49-115 82-145 (201)
66 PRK05569 flavodoxin; Provision 46.6 19 0.00048 15.4 5.1 35 50-84 2-37 (141)
67 TIGR03288 CoB_CoM_SS_B CoB--Co 45.7 19 0.00049 15.3 9.3 42 52-93 4-45 (290)
68 COG2185 Sbm Methylmalonyl-CoA 45.5 20 0.0005 15.3 5.6 41 48-94 11-54 (143)
69 PRK08117 4-aminobutyrate amino 45.0 20 0.00051 15.3 7.4 20 474-497 385-404 (429)
70 PRK03987 translation initiatio 44.2 20 0.00052 15.2 6.8 21 479-503 210-230 (262)
71 KOG1322 consensus 43.7 21 0.00053 15.1 4.2 51 64-115 41-91 (371)
72 TIGR01836 PHA_synth_III_C poly 43.5 18 0.00047 15.5 2.3 69 156-232 105-173 (367)
73 pfam03808 Glyco_tran_WecB Glyc 43.4 21 0.00054 15.1 7.0 54 58-116 29-84 (172)
74 PRK12615 galactose-6-phosphate 43.3 21 0.00054 15.1 7.8 23 317-339 81-104 (171)
75 PRK04338 N(2),N(2)-dimethylgua 43.0 21 0.00054 15.1 5.4 31 318-348 220-250 (376)
76 TIGR03379 glycerol3P_GlpC glyc 42.7 22 0.00055 15.0 4.3 15 220-235 183-197 (397)
77 TIGR01114 mtrH N5-methyltetrah 42.5 11 0.00029 16.8 1.1 101 167-289 70-174 (323)
78 PRK06806 fructose-bisphosphate 41.8 22 0.00057 14.9 9.3 95 36-149 29-127 (281)
79 PRK13398 3-deoxy-7-phosphohept 40.9 9.3 0.00024 17.4 0.4 20 204-223 196-216 (266)
80 cd03226 ABC_cobalt_CbiO_domain 40.1 22 0.00056 15.0 2.2 33 257-289 166-203 (205)
81 PRK05769 4-aminobutyrate amino 39.8 24 0.00061 14.7 8.2 18 474-497 400-417 (442)
82 COG0426 FpaA Uncharacterized f 39.6 24 0.00061 14.7 7.7 61 284-344 218-284 (388)
83 PRK08610 fructose-bisphosphate 38.3 25 0.00064 14.6 6.5 93 37-148 30-129 (286)
84 pfam08662 eIF2A Eukaryotic tra 37.1 16 0.00042 15.8 1.2 17 269-285 61-77 (194)
85 COG3823 Glutamine cyclotransfe 36.6 25 0.00063 14.7 2.0 17 271-287 232-248 (262)
86 TIGR02370 pyl_corrinoid methyl 36.2 27 0.00069 14.4 3.1 13 436-448 169-181 (201)
87 cd05313 NAD_bind_2_Glu_DH NAD( 36.0 27 0.00069 14.4 6.1 22 204-225 146-167 (254)
88 TIGR02883 spore_cwlD N-acetylm 35.9 16 0.00041 15.8 1.0 31 320-350 28-58 (192)
89 TIGR00075 hypD hydrogenase exp 35.5 28 0.00071 14.3 4.3 115 203-346 40-155 (384)
90 PRK07413 hypothetical protein; 35.4 28 0.00071 14.3 6.3 21 269-289 191-211 (382)
91 pfam01116 F_bP_aldolase Fructo 35.2 28 0.00072 14.3 9.5 94 36-148 27-124 (283)
92 PRK11274 glcF glycolate oxidas 34.8 29 0.00073 14.2 4.1 13 221-234 189-201 (407)
93 TIGR01318 gltD_gamma_fam gluta 34.4 29 0.00074 14.2 2.8 65 319-385 193-261 (480)
94 PRK07709 fructose-bisphosphate 33.7 30 0.00076 14.1 6.8 93 37-148 30-129 (285)
95 COG4254 Uncharacterized protei 33.4 30 0.00077 14.1 3.0 15 108-126 71-85 (339)
96 cd03556 L-fucose_isomerase L-f 33.0 30 0.00078 14.1 4.6 40 52-98 49-88 (584)
97 PRK12737 gatY tagatose-bisphos 32.8 31 0.00078 14.0 7.8 81 36-119 29-113 (284)
98 PRK09860 putative alcohol dehy 32.5 31 0.00079 14.0 2.1 54 50-105 32-91 (383)
99 cd00947 TBP_aldolase_IIB Tagat 32.3 31 0.0008 14.0 9.2 93 37-148 25-121 (276)
100 PRK07084 fructose-bisphosphate 32.2 31 0.0008 14.0 8.9 80 36-119 35-124 (321)
101 TIGR01829 AcAcCoA_reduct aceto 32.2 31 0.0008 14.0 3.1 66 38-106 13-78 (244)
102 TIGR02365 dha_L_ycgS dihydroxy 32.1 30 0.00076 14.1 1.9 30 353-389 169-199 (200)
103 COG1867 TRM1 N2,N2-dimethylgua 32.1 31 0.0008 14.0 4.2 21 324-344 227-247 (380)
104 TIGR02155 PA_CoA_ligase phenyl 32.0 32 0.00081 14.0 3.5 33 46-79 85-117 (431)
105 PRK10624 L-1,2-propanediol oxi 31.5 32 0.00082 13.9 2.0 45 51-97 31-75 (381)
106 KOG2044 consensus 30.6 32 0.0008 14.0 1.8 70 72-148 138-214 (931)
107 TIGR00829 FRU PTS system, Fru 30.5 31 0.00078 14.0 1.7 29 314-342 7-36 (85)
108 PRK08671 methionine aminopepti 29.7 35 0.00088 13.7 7.3 80 268-357 79-164 (293)
109 COG1454 EutG Alcohol dehydroge 29.6 35 0.00088 13.7 3.6 46 50-97 30-75 (377)
110 PRK07998 gatY putative fructos 29.2 35 0.0009 13.7 9.1 81 36-119 29-113 (283)
111 COG1962 MtrH Tetrahydromethano 29.2 20 0.0005 15.3 0.5 89 178-289 84-176 (313)
112 PRK06696 uridine kinase; Valid 29.1 35 0.0009 13.6 6.2 53 34-88 11-65 (227)
113 PRK13397 3-deoxy-7-phosphohept 28.9 24 0.00061 14.7 0.9 31 50-80 15-45 (250)
114 CHL00201 syh histidine-tRNA sy 28.3 14 0.00035 16.3 -0.4 65 65-145 24-90 (424)
115 TIGR01956 NusG_myco NusG famil 28.0 37 0.00094 13.5 2.4 45 248-292 127-182 (335)
116 PRK10512 selenocysteinyl-tRNA- 28.0 37 0.00094 13.5 2.8 71 60-151 59-134 (615)
117 PRK00979 tetrahydromethanopter 27.9 37 0.00094 13.5 3.6 87 179-288 82-172 (310)
118 PRK01379 cyaY frataxin-like pr 27.8 33 0.00083 13.9 1.5 18 469-488 68-85 (103)
119 PRK02304 adenine phosphoribosy 27.6 37 0.00096 13.5 4.8 11 277-287 111-121 (174)
120 pfam11823 DUF3343 Protein of u 27.3 38 0.00097 13.4 3.6 35 65-111 13-47 (73)
121 TIGR01358 DAHP_synth_II 3-deox 27.0 38 0.00098 13.4 3.7 31 50-80 35-66 (450)
122 KOG2781 consensus 26.7 31 0.0008 14.0 1.2 54 54-117 42-95 (290)
123 TIGR01011 rpsB_bact ribosomal 26.5 39 0.001 13.3 2.2 38 204-245 159-199 (227)
124 PRK09195 gatY tagatose-bisphos 26.2 40 0.001 13.3 9.2 94 36-148 29-126 (284)
125 cd03270 ABC_UvrA_I The excisio 25.9 34 0.00087 13.7 1.3 41 256-296 178-222 (226)
126 KOG0478 consensus 25.7 27 0.00069 14.4 0.7 17 268-284 501-517 (804)
127 TIGR01687 moaD_arch MoaD famil 25.6 41 0.001 13.2 1.9 64 390-484 23-88 (93)
128 KOG4609 consensus 25.2 41 0.0011 13.2 1.7 33 464-500 239-273 (284)
129 PRK05571 ribose-5-phosphate is 25.2 41 0.0011 13.2 7.9 19 317-335 82-100 (149)
130 PRK12857 putative aldolase; Re 25.2 41 0.0011 13.2 8.3 93 37-148 30-126 (284)
131 PRK13799 unknown domain/N-carb 24.6 26 0.00067 14.5 0.5 11 375-385 415-425 (591)
132 TIGR00709 dat 2,4-diaminobutyr 24.5 43 0.0011 13.1 7.7 140 326-500 232-418 (445)
133 TIGR02648 rep_term_tus DNA rep 24.3 39 0.001 13.4 1.3 45 391-439 170-214 (300)
134 PRK13590 putative bifunctional 24.2 27 0.0007 14.4 0.5 11 375-385 414-424 (590)
135 PRK12420 histidyl-tRNA synthet 24.2 28 0.00071 14.3 0.6 64 65-146 24-90 (421)
136 COG0140 HisI Phosphoribosyl-AT 23.9 16 0.00041 15.8 -0.7 62 326-407 28-89 (92)
137 COG4050 Uncharacterized protei 23.8 31 0.00078 14.0 0.7 24 339-362 65-92 (152)
138 PRK02866 cyanate hydratase; Va 23.7 44 0.0011 13.0 2.5 22 270-291 121-142 (147)
139 PRK11921 metallo-beta-lactamas 23.7 44 0.0011 13.0 7.7 16 506-521 376-391 (395)
140 PRK03515 ornithine carbamoyltr 23.6 44 0.0011 13.0 4.9 64 203-278 155-220 (334)
141 pfam00185 OTCace Aspartate/orn 23.2 45 0.0011 13.0 6.4 65 50-116 3-68 (155)
142 TIGR00500 met_pdase_I methioni 22.8 46 0.0012 12.9 2.1 81 267-354 101-188 (265)
143 TIGR02638 lactal_redase lactal 22.3 47 0.0012 12.8 2.2 44 51-96 31-74 (380)
144 PRK12295 hisZ ATP phosphoribos 22.1 39 0.001 13.3 1.0 64 62-144 7-72 (373)
145 KOG1199 consensus 21.8 41 0.0011 13.2 1.1 18 66-83 22-39 (260)
146 PRK09290 allantoate amidohydro 21.7 48 0.0012 12.8 5.4 62 55-126 26-91 (412)
147 KOG4287 consensus 21.7 48 0.0012 12.8 1.9 30 106-136 112-142 (402)
148 COG4016 Uncharacterized protei 21.5 45 0.0012 12.9 1.2 43 259-301 90-135 (165)
149 KOG3033 consensus 21.5 49 0.0012 12.7 2.4 18 470-487 259-277 (286)
150 KOG0061 consensus 21.0 50 0.0013 12.7 6.2 14 205-218 220-233 (613)
151 PRK05835 fructose-bisphosphate 21.0 50 0.0013 12.7 8.8 93 37-149 29-127 (307)
152 PRK13548 hmuV hemin importer A 20.9 50 0.0013 12.7 2.0 44 249-292 171-220 (257)
153 KOG2882 consensus 20.7 51 0.0013 12.6 4.0 22 321-342 224-245 (306)
154 pfam02502 LacAB_rpiB Ribose/Ga 20.7 51 0.0013 12.6 8.0 17 263-279 51-67 (140)
155 TIGR01850 argC N-acetyl-gamma- 20.2 52 0.0013 12.6 2.6 43 206-252 76-127 (361)
156 pfam02329 HDC Histidine carbox 20.1 30 0.00078 14.1 0.1 66 270-349 184-252 (306)
No 1
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=0 Score=971.28 Aligned_cols=537 Identities=58% Similarity=0.975 Sum_probs=489.3
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 5207876788887674204505444178999999999975465---4883899964767868999999999997898799
Q gi|254781107|r 5 IVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDC---AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARI 81 (542)
Q Consensus 5 ~~~~~~~~~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~---~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~ 81 (542)
-||++||+++|||||||||.++.|+...+++++++++++++.. .+++||||||+|++|++|++.+|++|++||++|+
T Consensus 2 ~~~~~~~~~~kfGTsGlRg~~~~f~~~~~l~~~~Qai~~~~~~~~~~g~~vvIGyD~R~~S~~fA~~~A~VlaanGi~v~ 81 (548)
T cd03085 2 TVPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAAANGVGKV 81 (548)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 62788767899976012774423467326999999999887751677985999857886789999999999987899799
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 96789806507999999850898179995765798988777358736878657867988999999740500013444687
Q gi|254781107|r 82 IIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVD 161 (542)
Q Consensus 82 ~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~ 161 (542)
++++.+++|||++||+||+++|++||||||||||+.||+|||||+|+++|+|++++.+++|++.++++......+..+.+
T Consensus 82 l~~~~~~~PTP~lSfaVr~l~a~aGImITASHNP~~p~~dnGyKv~~~~Ggpa~~~it~~I~~~~~~i~~~~~~~~~~~d 161 (548)
T cd03085 82 VVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVD 161 (548)
T ss_pred EECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95899837785889999971887359982678989888877579836889969768899999998644554215655689
Q ss_pred HHHCCHHCC--CCCEEEEEEECHHHHHHHHHCCCCHHHHCCC-CCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 121031002--5750589840222675433207803220013-3784699850355440122111231058501233201
Q gi|254781107|r 162 INHIGTKEL--ANMTISVIDPIENYVALMENIFDFDAIRKLL-SFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNF 238 (542)
Q Consensus 162 ~~~~~~~~~--~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~-~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~ 238 (542)
+...+.... ....++.+|.+..|++.+++.+|+++|++.. .++|||++|||||+++.++.++|.+.+|++...+.|+
T Consensus 162 ~~~~g~~~~~~~~~~ve~iD~~~~Yi~~l~~~~D~~~I~~~~~~~~lkivydpmhGvg~~~~~~il~~~lG~~~~~vv~~ 241 (548)
T cd03085 162 LSKIGVTKFGGKPFTVEVIDSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVNC 241 (548)
T ss_pred HHHHCCEEECCCCCEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 46616233136763389846589999999874489988643247897599836867630679999999709994268778
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCEE
Q ss_conf 57875476446854222104788861225860789864887456885388722746599999999987202-04787168
Q gi|254781107|r 239 IPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPG-YATGLVGV 317 (542)
Q Consensus 239 ~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~g~~i~~~d~l~ll~~~~~~~~~-~~~~~~~v 317 (542)
.|||+||+.+|||+++++.+|.. .+++.++|+|+|+||||||++|++++.++++++.+++|+.|+...+. ...+...|
T Consensus 242 ~pdPdF~g~~P~P~~~~a~~L~~-~~~~~~aDlgiA~DpDADR~~I~g~g~~v~~~~~lall~~~~~~~~~~~~~g~~~v 320 (548)
T cd03085 242 TPLPDFGGGHPDPNLTYAKDLVE-LMKSGEPDFGAASDGDGDRNMILGKGFFVTPSDSVAVIAANAKLIPYFYKGGLKGV 320 (548)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHH-HHHCCCCCEEEECCCCCCCCEECCCCCEECCCCHHHHHHHHHHHCHHHHHCCCCEE
T ss_conf 30798899896987689999999-97267987899728710465573488365886279999999996613453587327
Q ss_pred EEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 75310837999984047615998286326654210269738862112301347421575167899999999724688899
Q gi|254781107|r 318 ARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLD 397 (542)
Q Consensus 318 v~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la~~gk~l~d 397 (542)
++|++||.++++||+++|++++|||||||||+++|.++++.||||||+|++++|+||||||+++++++||+|++|++|.|
T Consensus 321 ~kTivTS~mld~IA~~~G~~~~ETltGFKwig~~m~~~~~~~ggEES~G~~~~~vrDKDGI~A~l~~~e~~A~~Gktl~d 400 (548)
T cd03085 321 ARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVED 400 (548)
T ss_pred EEEECCHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 88612178999999981994598487306630010367513520124564688766851899999999999983999999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 998899882966121100136877899999999998775316---52115642010000000113467737467089998
Q gi|254781107|r 398 IVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI---GSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVF 474 (542)
Q Consensus 398 ~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~ 474 (542)
+|++||++||++||.|+++...+.++++.+|+.+++.+++.. ...+.+.+|....||.+.+..++.+++.||||+.|
T Consensus 401 ~l~~l~~~yG~~~y~r~d~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~v~~~~d~~~~d~~d~~~~~~~glk~~l 480 (548)
T cd03085 401 IVKEHWQKYGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRIIF 480 (548)
T ss_pred HHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999999676630010301378789999999998643133567654557559997046554687778656688699997
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89919999758888785589999995289978999999999999999999985066883789997579
Q gi|254781107|r 475 DNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSIAS 542 (542)
Q Consensus 475 ~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~ 542 (542)
+||+|+++||||||||-.+||||+|++++|..+...+.|+.|+++++.++++.+|++||||+.|||+|
T Consensus 481 edGs~~~vRPSGTEPk~~~lK~Y~E~~~~d~~k~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~p~~~~ 548 (548)
T cd03085 481 EDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALKLSKLKEFTGREEPTVIT 548 (548)
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 29859999778888889738999999558825316889999999999999985727775899997409
No 2
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=0 Score=859.47 Aligned_cols=490 Identities=36% Similarity=0.533 Sum_probs=411.8
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 5207876788887674204505444-1789999999999754--654883899964767868999999999997898799
Q gi|254781107|r 5 IVPTVPYQDQKPGTSGLRKKVSVFQ-QNSYTENFIQAIFNNV--DCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARI 81 (542)
Q Consensus 5 ~~~~~~~~~l~FGT~GiRG~~~~~~-~~~~~~~~~~ai~~~~--~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~ 81 (542)
-.|++|||+|+|||+||||.++... +..++..+.++++++. ...+++||||||+|+.|++|++.+|++|++|||+|+
T Consensus 31 ~~~~~~~~~~~FGT~G~RG~~~~~~~n~~~v~~~tq~la~y~~~~~~~~~vvIg~D~R~~S~~fa~~aa~VlaanGi~v~ 110 (544)
T PRK07564 31 PDPTNPFQDVKFGTSGHRGSSLQPSFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANGVGVV 110 (544)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99898545778868756787789983399999999999999983599998899847886799999999999987898899
Q ss_pred EECCCCCCCCHHHHHHHHHH----CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 96789806507999999850----89817999576579898877735873687865786798899999974050001344
Q gi|254781107|r 82 IIGKGGILSTPAVSHLIRKY----KASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEA 157 (542)
Q Consensus 82 ~~~~~gi~PTP~~~~av~~~----~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~ 157 (542)
++++++++|||++|||||++ ++++||||||||||++|| |||+|+++|+|++++.+++|++.++++....+.+.
T Consensus 111 l~~~~~~~PTP~lS~aVr~~~~~~~a~~GImITASHNPpeyN---GyKv~~~~Ggpa~~~it~~Ie~~~~~i~~~~~~~v 187 (544)
T PRK07564 111 IVGNGGYTPTPAVSHAILKYNRGGGLADGIVITPSHNPPEDG---GIKYNPPNGGPADEDVTDAIEARANALLAYGLKGV 187 (544)
T ss_pred EECCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC---CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 948999788729999999853365756218973688996448---18976788897988999999999977643244676
Q ss_pred CCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 46871210310025750589840222675433207803220013378469985035544012211123105850123320
Q gi|254781107|r 158 NDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237 (542)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~ 237 (542)
.+.++.. ......++.+|.++.|++.+++.+|+++|++ ++|||++|||||++..+++++| +.+|+++..+ +
T Consensus 188 ~~~~~~~----~~~~~~v~~~D~~~~Y~~~l~~~id~~~i~~---~~lkIv~dplhGag~~~~~~il-~~~g~~v~~v-~ 258 (544)
T PRK07564 188 KRIDLDR----ALGSMTVEVIDLVADYVEDLENVFDFDAIRK---AGLRLGVDPLGGVTGPYWKAIA-ERYGLDLTVV-N 258 (544)
T ss_pred CCCCHHH----HHCCCCEEEECCHHHHHHHHHHHCCHHHHCC---CCCEEEEECCCCCCHHHHHHHH-HHCCCCEEEE-C
T ss_conf 6578778----7315845885658999999987438555325---8975998268776478899999-9819982996-8
Q ss_pred CCCCCC--------CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 157875--------476446854222104788861225860789864887456885388722746599999999987202
Q gi|254781107|r 238 FIPLED--------FGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPG 309 (542)
Q Consensus 238 ~~pd~~--------F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~g~~i~~~d~l~ll~~~~~~~~~ 309 (542)
..+||+ ||+++|||+++++ |+..++.+.++|+|+|+||||||++|+++++++++||++++|+.|++..+.
T Consensus 259 ~~~dp~f~f~~~~~~G~~~PnP~~~~a--la~~l~~~~~aDlgiA~DpDADR~giv~~~g~l~~n~~~alL~~yl~~~r~ 336 (544)
T PRK07564 259 APVDPTFNFMPLDDDGGIRMDCSSPYA--MAGLLALKDAFDLAFANDPDGDRHGIVTPGGLMNPNHYLAVAIAYLFHHRP 336 (544)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHCCCCCEEEEECCCCCEEEEEECCCEECCCHHHHHHHHHHHHHCC
T ss_conf 878898888768644675899986889--999874135876799865887614476347222555899999999997360
Q ss_pred CCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC------CCCCCCCCCHHHHHH
Q ss_conf 04787168753108379999840476159982863266542102697388621123013------474215751678999
Q gi|254781107|r 310 YATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG------SNHSREKDGIWSILF 383 (542)
Q Consensus 310 ~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~------~~~~~dkDgi~aal~ 383 (542)
...+...|++|++||.++++||+++|+++++|+||||||++.|.++++.||||||+|+. ++|+||||||+++|+
T Consensus 337 ~~~~~~~V~kTivTS~lld~iA~~~G~~~~et~tGFK~I~~~m~~~~~~fGgEES~G~~~l~~~g~~~vrDKDGi~aaLl 416 (544)
T PRK07564 337 GWSKGAGVGKTLVSSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDAGSIGFGGEESAGASFLRRDGSVWTTDKDGLIAVLL 416 (544)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 24788727998057189999999849827991462899998873278046312545614214677776888529999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCC
Q ss_conf 99999724688899998899882966121100136877899999999998775316521156420100000001134677
Q gi|254781107|r 384 WLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGN 463 (542)
Q Consensus 384 ~le~la~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~ 463 (542)
++||+|.+|++|+|+++++|++||++||.|.++...+.++ .+|++++....+ ..++.|.++.... +...++
T Consensus 417 ~~Ei~A~~gktl~~~l~~l~~~~G~~~y~r~d~~~~~~~k--~~~~~l~~~~~~--~~~laG~~v~~~~-----~~~~~~ 487 (544)
T PRK07564 417 AAEILAVTGKSPAEIYQELWARFGRPYYSRHDAEATPEQK--ALLSKLSPEQVS--ATELAGEPITASL-----TDAPGN 487 (544)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHH--HHHHHHHHCCCC--CCCCCCCEEEEEE-----CCCCCC
T ss_conf 9999998794999999999998687723422555677899--999961113477--6432784224676-----047777
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 374670899988991999975888878558999999528997899999999999999999
Q gi|254781107|r 464 VSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVS 523 (542)
Q Consensus 464 i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~ 523 (542)
++++||+|+.|+|| |+++|||||||| ||||+||++. +++|.++++.+..++..+
T Consensus 488 ~~~~dGlk~~~edG-wv~vRpSGTEPk---iRiY~Es~~~--~~~~~~~~~~~~~~~~~~ 541 (544)
T PRK07564 488 GAAIGGLKVVTENG-WFAARPSGTETT---YKIYAESFEG--EEHLKQIQPEAALIVLIA 541 (544)
T ss_pred CCCCCCEEEEECCE-EEEEECCCCCCE---EEEEEEECCC--HHHHHHHHHHHHHHHHHH
T ss_conf 57778479997798-999971487738---9999975488--899987889899876787
No 3
>PTZ00150 phosphoglucomutase; Provisional
Probab=100.00 E-value=0 Score=802.77 Aligned_cols=496 Identities=20% Similarity=0.273 Sum_probs=388.4
Q ss_pred CCCCCCCCCCCCEEECCCCCH-------HHHHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 678888767420450544417-------899999999997546---5488389996476786899999999999789879
Q gi|254781107|r 11 YQDQKPGTSGLRKKVSVFQQN-------SYTENFIQAIFNNVD---CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFAR 80 (542)
Q Consensus 11 ~~~l~FGT~GiRG~~~~~~~~-------~~~~~~~~ai~~~~~---~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V 80 (542)
|++|+|||+|+||++|.++++ +.++++++++.+... .++++||||||+|++|++||+.+|.+|+++|++|
T Consensus 46 ~~~L~FGTaGlRg~mg~G~nrmN~~tv~~atqGla~yl~~~~~~~~~~~~gVVIgyD~R~~S~~FA~~~A~Vla~~Gi~v 125 (593)
T PTZ00150 46 LKRLNFGTAGLRGKMCVGFNAMNVVTIMQTTQGLCSYLINTYGINLCKNRGIIFGFDGRYHSESFAHVAASVCLSKGFRV 125 (593)
T ss_pred CCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 78887618411177588875012899999999999999986685324678889962798684999999999999789889
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf 99678980650799999985089817999576579898877735873687865786798899999974-05000134446
Q gi|254781107|r 81 IIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK-ITSYQIIEAND 159 (542)
Q Consensus 81 ~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~-~~~~~~~~~~~ 159 (542)
++++ .++|||++||+|++++|++||||||||||++|| |||+|+++|+|+.|+++++|.+.+.+ +.... +..+
T Consensus 126 ~l~~--~~~PTP~lsfaVr~l~a~~GImITASHNP~~yN---GyKvY~~~G~Qi~pp~d~~I~~~i~~~~~~~~--~~~~ 198 (593)
T PTZ00150 126 YLFA--QTVATPILCYSNFKKNCLCGVMVTASHNPKLDN---GYKVYAANGAQIIPPVDKNISDCILNNLEPWK--DAYD 198 (593)
T ss_pred EEEC--CCCCCCCCHHHHHCCCCCEEEEEECCCCCHHHC---CEEEECCCCCCCCCHHHHHHHHHHHHHCCCHH--HHHH
T ss_conf 9918--999875201888613886589997278984567---88874589862587677999999986367403--4443
Q ss_pred CCHHHCCHHCCCCCEEE--EEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE-E-EE
Q ss_conf 87121031002575058--98402226754332078032200133784699850355440122111231058501-2-33
Q gi|254781107|r 160 VDINHIGTKELANMTIS--VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT-G-SV 235 (542)
Q Consensus 160 ~~~~~~~~~~~~~~~~~--~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~-~-~~ 235 (542)
..... ........++ ..+..+.|++.+++.++++.++. ...+++||+|||||+|..+++++| +.+|.+. . +.
T Consensus 199 ~~~~~--~~~~~~~li~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~lkivytpmHGtG~~~v~~~l-~~~G~~~~~~V~ 274 (593)
T PTZ00150 199 YLNED--FYLKDTSLVEDIYFEMYDSFMDDLKHEFNFNCHRN-SRTKLAIVYSPMHGIGRKFVQGIM-HIVGFNNLLTVP 274 (593)
T ss_pred HCCCH--HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHC-CCCCCEEEECCCCCCCHHHHHHHH-HHCCCCCEEEEC
T ss_conf 12302--20265421333369999999999987607213331-478964997899887587999999-981999608952
Q ss_pred EECCCCCCCCCC-CCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 201578754764-468542221047888612258607898648874568853----887227465999999999872020
Q gi|254781107|r 236 RNFIPLEDFGGC-HPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG----KGIFVNPSDSLAIMVANAGLIPGY 310 (542)
Q Consensus 236 ~~~~pd~~F~~~-~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd----~g~~i~~~d~l~ll~~~~~~~~~~ 310 (542)
.|+.|||+||++ .||||++.+++++.+++.+.++|++||+||||||++|+. ++.+++||++.++|..|++.....
T Consensus 275 eQ~~pD~~Fptv~~PNPEe~~al~la~~~a~~~~adliiAtDPDADRlgva~~~~~~~~~ltGNe~g~Ll~~~ll~~~~~ 354 (593)
T PTZ00150 275 QQALPDADFSTVSFPNPEEKGALDMSMELADKVCSPIVVANDPDADRFACAEKFNNKWKIFSGDELGIIFAYHLMKQNEK 354 (593)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 45668999999999998744578999999886489999950898772688886389637778119999999999998886
Q ss_pred C---CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC-----CCEEEECCCCCEEC-CCCCCCCCCHHHH
Q ss_conf 4---7871687531083799998404761599828632665421026-----97388621123013-4742157516789
Q gi|254781107|r 311 A---TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLEN-----GMITICGEESFGTG-SNHSREKDGIWSI 381 (542)
Q Consensus 311 ~---~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~-----~~~~~ggEeS~G~~-~~~~~dkDgi~aa 381 (542)
. .....|++|+|||.++++||+++|+++++|+||||||++.+.+ ..++||||||+|++ .+|+|||||++++
T Consensus 355 ~~~~~~~~~vv~TiVSS~ll~~IA~~~G~~~~etlTGFK~Ig~~~~~~~~~~~~~lfG~EES~Gyl~~~~vrDKDGi~Aa 434 (593)
T PTZ00150 355 KNIDKSKHVFICTVVCSRMLKKLCEKYGYKYDETLTGFKWIINKAIDLNEENYTILYCYEEALGHALTKHVKDKCGISAL 434 (593)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCCHHHHHH
T ss_conf 48987786799998441789999998299447458771578888987640585078641101566158878884389999
Q ss_pred HHHHHHHH---HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCC
Q ss_conf 99999997---246888999988998829661211001368778999999999987753165211564201000000011
Q gi|254781107|r 382 LFWLNILA---VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTD 458 (542)
Q Consensus 382 l~~le~la---~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~ 458 (542)
++++||++ .+|++|.|.|++||++||++......+.....++...+|+.+|.. ...+.++.+.+|....|+...-
T Consensus 435 ~l~~Emaa~~~~~g~tL~d~L~eiy~~yGy~~~~~~~~~~~~~~~i~~i~~~~r~~--~~~~~~i~~~~V~~v~D~~~g~ 512 (593)
T PTZ00150 435 AYWIEIAVYLYENGLTFHEYLENIREEIGYFVNNNGYYIVLDPNDIVSIFNDFRGN--GLYKSELGSYKIIHIRDLTTGY 512 (593)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCC--CCCCCCCCCEEEEEEEECCCCC
T ss_conf 99999999999739999999999999839733253458727989999999998618--9986301674578998444564
Q ss_pred ---CCC-----CCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---346-----7737467089998899199997588887855899999952899789999999999999999
Q gi|254781107|r 459 ---STN-----GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEV 522 (542)
Q Consensus 459 ---~~~-----~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~ 522 (542)
..+ ...++.|+|++.|+||+|+++|||||||| ||+|+|...++.++.-+.+.+...++++.
T Consensus 513 ~~~~~d~~~~~~~~p~s~~l~~~ledgs~i~iRpSGTEPK---iK~Y~e~~~~~~~~a~~~l~~~~~~i~~~ 581 (593)
T PTZ00150 513 DSTTADGKSLIAPTPDSQNITIHFENTAILTIRASGTEPK---VKWYAEISRDSYEQAKEEIDQLIDEVMPL 581 (593)
T ss_pred CCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCCHHH---EEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 4447898551268995556999983997999986785260---79999985497999999999999999999
No 4
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=799.39 Aligned_cols=486 Identities=28% Similarity=0.372 Sum_probs=398.6
Q ss_pred EECCCCCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 207876788887674204505444-17899999999997546--548838999647678689999999999978987999
Q gi|254781107|r 6 VPTVPYQDQKPGTSGLRKKVSVFQ-QNSYTENFIQAIFNNVD--CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARII 82 (542)
Q Consensus 6 ~~~~~~~~l~FGT~GiRG~~~~~~-~~~~~~~~~~ai~~~~~--~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~ 82 (542)
-|++|.|+++|||+||||.++.+. +..++.+++++++++.. ...++||||||+|++|++|++.+|++|+++|++|++
T Consensus 13 ~~~~~~~ri~FGT~G~RG~~g~~~~n~~~v~~~~~al~~~~~~~~~~~~vvIG~D~R~~S~~~a~~aa~vl~a~Gi~V~l 92 (522)
T cd05801 13 DPSNPAQRVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVII 92 (522)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99986657665685126776899988999999999999999972999878999689867699999999999978987999
Q ss_pred ECCCCCCCCHHHHHHH------HHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6789806507999999------8508981799957657989887773587368786578679889999997405000134
Q gi|254781107|r 83 IGKGGILSTPAVSHLI------RKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIE 156 (542)
Q Consensus 83 ~~~~gi~PTP~~~~av------~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~ 156 (542)
++++|++|||++|||| +++++++||||||||||++|| |||+|+++|+|+.++.+++|++.++.+.......
T Consensus 93 ~~~~~~~PTP~vsfaV~~~~~~~~~~~a~GImITASHNP~eyN---GiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~ 169 (522)
T cd05801 93 QQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPSHNPPEDG---GFKYNPPHGGPADTDITRWIEKRANALLANGLKG 169 (522)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHC---CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 3799847860899999987665531767349981588980568---6887568899699789999999998765403366
Q ss_pred CCCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 44687121031002575058984022267543320780322001337846998503554401221112310585012332
Q gi|254781107|r 157 ANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 (542)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~ 236 (542)
....++... .....+...|..+.|++.+.+.+|.+.++. ++++|++||+||+++.+++++| +.+|+++..+
T Consensus 170 v~~~~~~~~----~~~~~~~~~d~~~~Y~~~l~~~vd~~~i~~---~~lkIv~d~~~Gag~~~~~~ll-~~~g~~v~~v- 240 (522)
T cd05801 170 VKRIPLEAA----LASGYTHRHDFVTPYVADLGNVIDMDAIRK---SGLRLGVDPLGGASVPYWQPIA-EKYGLNLTVV- 240 (522)
T ss_pred CCCCCHHHH----HCCCEEEEEECHHHHHHHHHHHCCHHHHCC---CCCEEEEECCCCCCCHHHHHHH-HHCCCCEEEE-
T ss_conf 676886575----016837986408999999987659655501---6976999668987411589999-8829987998-
Q ss_pred ECCCCCCCCCCCC--------CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0157875476446--------8542221047888612258607898648874568853-887227465999999999872
Q gi|254781107|r 237 NFIPLEDFGGCHP--------DPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSLAIMVANAGLI 307 (542)
Q Consensus 237 ~~~pd~~F~~~~P--------nP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd-~g~~i~~~d~l~ll~~~~~~~ 307 (542)
++.+||+|+..+| ||+.+.++. ..+..+.++|+|||+||||||++++| +|+++++++++++++.|++..
T Consensus 241 ~~~~dp~f~f~~~~~~g~i~~np~~p~~l~--~l~~~~~~~dlgiA~DgDaDR~~vvd~~g~~l~gd~i~~ll~~~ll~~ 318 (522)
T cd05801 241 NPKVDPTFRFMTLDHDGKIRMDCSSPYAMA--GLLKLKDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTH 318 (522)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHCCCCEEEECCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHH
T ss_conf 982579999889899866578998889999--999742156746612787771489978982887899999999999971
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECC------CCCCCCCCHHHH
Q ss_conf 02047871687531083799998404761599828632665421026973886211230134------742157516789
Q gi|254781107|r 308 PGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGS------NHSREKDGIWSI 381 (542)
Q Consensus 308 ~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~------~~~~dkDgi~aa 381 (542)
+....+...|++|++||.+++++|+++|+++++|+||||||++.|.+.++.||||||+|+.. .|++||||++++
T Consensus 319 r~~~~~~~~v~~Tvvss~~l~~ia~~~G~~~~~t~vGfK~i~~~m~~~~~~fGgEeS~G~~f~~~~g~~~~~dkDGi~aa 398 (522)
T cd05801 319 RPLWNKSAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMC 398 (522)
T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCEECCCCHHHHH
T ss_conf 50158886168872375999999998699479804827999999986894588714368677416885100367389999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCC
Q ss_conf 99999997246888999988998829661211001368778999999999987753165211564201000000011346
Q gi|254781107|r 382 LFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461 (542)
Q Consensus 382 l~~le~la~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~ 461 (542)
++++||++++|++|++++++|+++||.++|.|++......++ ..+.++ ...+..+.++.+.++....+ ...
T Consensus 399 ll~~e~~a~~gk~l~~ll~el~~~~G~~~y~~~~~~~~~~~k--~~~~~~--~~~~~~~~~~~g~~v~~~~~-----~~~ 469 (522)
T cd05801 399 LLAAEILAVTGKDPGQLYQELTERFGEPYYARIDAPATPEQK--ARLKKL--SPEQVTATELAGDPILAKLT-----RAP 469 (522)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHH--HHHHHC--CHHHCCCCHHCCCCCEEEEE-----CCC
T ss_conf 999999998696999999999998588753130156898999--999855--84325841205854012341-----155
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 77374670899988991999975888878558999999528997899999999999999
Q gi|254781107|r 462 GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520 (542)
Q Consensus 462 ~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li 520 (542)
++..++||+|+.++|+ |+++|||||||| ||||+|+++ +++.+++++++++++|
T Consensus 470 ~~~~~idG~ki~~~dg-w~liRpSGTEPk---iRiy~Ea~~--~ee~~~~l~~~~~~~v 522 (522)
T cd05801 470 GNGASIGGLKVTTANG-WFAARPSGTEDV---YKIYAESFL--SEEHLKKIQKEAQEIV 522 (522)
T ss_pred CCCCCCCCEEEEECCE-EEEEECCCCHHH---HEEEECCCC--CHHHHHHHHHHHHHHC
T ss_conf 6655568779980885-899976472610---142572488--9899999999998559
No 5
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=0 Score=743.13 Aligned_cols=442 Identities=30% Similarity=0.449 Sum_probs=373.2
Q ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 888767420450544417899999999997546---54883899964767868999999999997898799967898065
Q gi|254781107|r 14 QKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD---CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILS 90 (542)
Q Consensus 14 l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~---~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~P 90 (542)
++|||+||||+++..+++.++.++++++++.+. ..+++|+||||+|.+|++|+++++++|+++|++|+++ .|++|
T Consensus 1 ~~FGT~GiRG~~~~~lt~~~v~~ig~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~~~~a~~~gl~s~G~~V~~~--~g~~p 78 (461)
T cd05800 1 IKFGTDGWRGIIAEDFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLS--DRPVP 78 (461)
T ss_pred CCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC--CCCCC
T ss_conf 9438997321479998999999999999999997479999799997898258999999999999779979988--99887
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCC
Q ss_conf 07999999850898179995765798988777358736878657867988999999740500013444687121031002
Q gi|254781107|r 91 TPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKEL 170 (542)
Q Consensus 91 TP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (542)
||+++|+++++++++||||||||||++|| |||||+++|+++.++.+++|++.+....... ... .
T Consensus 79 TP~~~~~~~~~~a~~GImITASHNP~~~N---GiK~~~~~G~~~~~~~~~~ie~~~~~~~~~~------~~~-------~ 142 (461)
T cd05800 79 TPAVSWAVKKLGAAGGVMITASHNPPEYN---GVKVKPAFGGSALPEITAAIEARLASGEPPG------LEA-------R 142 (461)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCC---EEEEECCCCCCCCHHHHHHHHHHHHCCCCCC------CCC-------C
T ss_conf 59999999964998699998378986454---2999789998389999999999971677555------543-------5
Q ss_pred CCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 57505898402226754332078032200133784699850355440122111231058501233201578754764468
Q gi|254781107|r 171 ANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPD 250 (542)
Q Consensus 171 ~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~Pn 250 (542)
....+...|..+.|++++.+.++.+.++. ++++|++||+||+++.+++++|+ .+|++++.+ |+.||++||+++||
T Consensus 143 ~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~---~~lkIvid~~~G~~~~~~~~ll~-~lg~~v~~~-~~~~d~~f~~~~p~ 217 (461)
T cd05800 143 AEGLIETIDPKPDYLEALRSLVDLEAIRE---AGLKVVVDPMYGAGAGYLEELLR-GAGVDVEEI-RAERDPLFGGIPPE 217 (461)
T ss_pred CCCCEEEECCHHHHHHHHHHHCCHHHHHC---CCCEEEEECCCCHHHHHHHHHHH-HHCCEEEEE-CCCCCCCCCCCCCC
T ss_conf 79837981758999999987549555512---69779998899656655899998-609749997-77147999987999
Q ss_pred CCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 5422210478886122586078986488745688538-872274659999999998720204787168753108379999
Q gi|254781107|r 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDR 329 (542)
Q Consensus 251 P~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ 329 (542)
|+++++.+|. +.+++.++|+|+++||||||++++|+ |.++++++++++++.|+++.+... ..||.|++||.++++
T Consensus 218 p~~~~l~~l~-~~v~~~~adlgia~DgDaDR~~~vd~~G~~i~gd~l~alla~~l~~~~~~~---~~vv~tv~ss~~i~~ 293 (461)
T cd05800 218 PIEKNLGELA-EAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLR---GPVVKTVSTTHLIDR 293 (461)
T ss_pred CCHHHHHHHH-HHHHHCCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCC---CCEEEEECCCHHHHH
T ss_conf 8768999999-999833988346764997679999589957989899999999999707888---873686158379999
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 840476159982863266542102697388621123013-4742157516789999999972468889999889988296
Q gi|254781107|r 330 VAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGR 408 (542)
Q Consensus 330 ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~ 408 (542)
+++++|++++||+||||||++.|.+++++||||+|+|++ .+|.+++||++++++++++++.+|++|+|++++|+++||+
T Consensus 294 i~~~~g~~~~rt~vG~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~~le~l~~~~~~l~~~~~~l~~~~~~ 373 (461)
T cd05800 294 IAEKHGLPVYETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEYGP 373 (461)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 99977988999648738999887642013574455876126768799889999999999998499999999998997487
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 61211001368778999999999987753165211564201000000011346773746708999889919999758888
Q gi|254781107|r 409 NYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTD 488 (542)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTE 488 (542)
+++.+.++.. +.++...+|..+++ .......+.++. .+.++||+|+.|+|++|+++||||||
T Consensus 374 ~~~~~~~~~~-~~~~k~~~~~~l~~----~~~~~~~~~~~~-------------~~~~iDGlk~~~~dg~w~lvRpSgTE 435 (461)
T cd05800 374 SYYDRIDLRL-TPAQKEAILEKLKN----EPPLSIAGGKVD-------------EVNTIDGVKLVLEDGSWLLIRPSGTE 435 (461)
T ss_pred CCCEEEEEEC-CHHHHHHHHHHHHH----CCCHHHCCCCCE-------------EEEECCCEEEEECCCCEEEEECCCCC
T ss_conf 7522564216-98999999999871----442233477511-------------68813637999469839999864980
Q ss_pred CCCCEEEEEEEECCC
Q ss_conf 785589999995289
Q gi|254781107|r 489 TENSTLRVYIDNYEP 503 (542)
Q Consensus 489 Pk~~~iRiy~E~~~~ 503 (542)
|+ ||||+|+.++
T Consensus 436 P~---iriy~Ea~~~ 447 (461)
T cd05800 436 PL---LRIYAEAPSP 447 (461)
T ss_pred CE---EEEEEEECCH
T ss_conf 16---9999997999
No 6
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=0 Score=742.26 Aligned_cols=454 Identities=23% Similarity=0.293 Sum_probs=352.4
Q ss_pred CCCCCCCCCCEEECCCC---CHHHHHHHHHHHHH----HCC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 88887674204505444---17899999999997----546-54883899964767868999999999997898799967
Q gi|254781107|r 13 DQKPGTSGLRKKVSVFQ---QNSYTENFIQAIFN----NVD-CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIG 84 (542)
Q Consensus 13 ~l~FGT~GiRG~~~~~~---~~~~~~~~~~ai~~----~~~-~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~ 84 (542)
.++||||||||++|.++ +...+..++++++. ... ..+++|+||||+|++|++|+.+++++|+++|++|+++
T Consensus 1 ~i~FGT~GiRG~vg~~~~~~n~~~v~~~~~a~~~~l~~~~~~~~~~~VvVG~DtR~ss~~~a~~~a~~l~~~G~~V~~~- 79 (487)
T cd05799 1 RLEFGTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLF- 79 (487)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC-
T ss_conf 9655588525236899886889999999999999999856767898699997898678999999999999779979988-
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 89806507999999850898179995765798988777358736878657867988999999740500013444687121
Q gi|254781107|r 85 KGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINH 164 (542)
Q Consensus 85 ~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 164 (542)
.|++|||+++|+++++++++||||||||||++|| |||||+++|+|+.++.+++|++.+++......... .
T Consensus 80 -~g~~PTP~~~~~~~~~~a~~GImITASHNP~~~N---GiK~~~~~G~~l~~~~~~~I~~~i~~~~~~~~~~~-----~- 149 (487)
T cd05799 80 -DDLRPTPLLSFAVRHLGADAGIMITASHNPKEYN---GYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKF-----E- 149 (487)
T ss_pred -CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCC---CEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----C-
T ss_conf -9978857999999961998579993489975227---77987799984786688999999984335211553-----1-
Q ss_pred CCHHCCCCCEEEE--EEECHHHHHHHHHCC-CCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEE--EECC
Q ss_conf 0310025750589--840222675433207-8032200133784699850355440122111231058501233--2015
Q gi|254781107|r 165 IGTKELANMTISV--IDPIENYVALMENIF-DFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV--RNFI 239 (542)
Q Consensus 165 ~~~~~~~~~~~~~--~d~~~~Y~~~l~~~~-d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~--~~~~ 239 (542)
.......++. .|..+.|++++.+.+ +.+.+ ..++++|++||+||+++.+++++| +.||++++.+ .||.
T Consensus 150 ---~~~~~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~---~~~~lkVvvD~~nGa~~~~~~~ll-~~lG~~~v~~v~~~~~ 222 (487)
T cd05799 150 ---EALDSGLIKYIGEEIDDAYLEAVKKLLVNPELN---EGKDLKIVYTPLHGVGGKFVPRAL-KEAGFTNVIVVEEQAE 222 (487)
T ss_pred ---CCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHH---CCCCCEEEEECCCCCHHHHHHHHH-HHCCCCEEEEECCCCC
T ss_conf ---002478527764878999999998756884464---038977999579873899999999-9769972699333434
Q ss_pred CCCCCCC-CCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEE--CC-C--CCCCCHHHHHHHHHHHHHCCCC---
Q ss_conf 7875476-446854222104788861225860789864887456885--38-8--7227465999999999872020---
Q gi|254781107|r 240 PLEDFGG-CHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL--GK-G--IFVNPSDSLAIMVANAGLIPGY--- 310 (542)
Q Consensus 240 pd~~F~~-~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~iv--d~-g--~~i~~~d~l~ll~~~~~~~~~~--- 310 (542)
|||+||+ ++|||+.+.++++..+++++.++|+|||+||||||++++ |+ + ..++|++++++++.|++..+..
T Consensus 223 pDg~Fp~~~~pnPe~~~~l~~~~~~v~~~~aD~Gia~DGDaDR~~vv~~d~~g~~~~i~GD~i~al~a~~ll~~~~~~~~ 302 (487)
T cd05799 223 PDPDFPTVKFPNPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGK 302 (487)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79998999998965256799999999852898899977888746899985899779706589999999999999887166
Q ss_pred CCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC-----CCEEEECCCCCEE-CCCCCCCCCCHHHHHHH
Q ss_conf 47871687531083799998404761599828632665421026-----9738862112301-34742157516789999
Q gi|254781107|r 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLEN-----GMITICGEESFGT-GSNHSREKDGIWSILFW 384 (542)
Q Consensus 311 ~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~-----~~~~~ggEeS~G~-~~~~~~dkDgi~aal~~ 384 (542)
..+...||+|++||.+++++|+++|++++||+||||||++.|.+ ++++||||||+|+ .++|+++|||+++++++
T Consensus 303 ~~~~~~vv~t~~ss~~~~~ia~~~g~~~~~t~VG~k~v~~~m~~~~~~~~~~~~ggEeS~G~~~~~~~~~~Dgi~aal~~ 382 (487)
T cd05799 303 LPKNPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALL 382 (487)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78997799984062799999998799799927870999999998655587537886110474557865578679999999
Q ss_pred HHHHH---HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCC
Q ss_conf 99997---246888999988998829661211001368778999999999987753165211564201000000011346
Q gi|254781107|r 385 LNILA---VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461 (542)
Q Consensus 385 le~la---~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~ 461 (542)
++|++ .++++|+|++++++++||.+...+.+.... .+...+.++.+.+.+++
T Consensus 383 lei~~~~~~~~~~l~e~l~~i~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~------------------------ 437 (487)
T cd05799 383 AEMAAYLKAQGKTLLDRLDELYEKYGYYKEKTISITFE-GKEGPEKIKAIMDRLRN------------------------ 437 (487)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH------------------------
T ss_conf 99999998759989999999999828775405889836-86769999999999863------------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 7737467089998899199997588887855899999952899789999999999999
Q gi|254781107|r 462 GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDL 519 (542)
Q Consensus 462 ~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~l 519 (542)
..||+|+.|+|++|+++|||||||+ ||||+|+.++ +.++++++.+.++
T Consensus 438 ----~~dg~~~~~~dg~w~lvR~SGTEP~---iRvy~Ea~~~---~~~e~~~~~~~~~ 485 (487)
T cd05799 438 ----NPNVLTFYLEDGSRVTVRPSGTEPK---IKFYIEVVGK---KTLEEAEKKLDAL 485 (487)
T ss_pred ----CCCEEEEEECCCEEEEEECCCCHHH---EEEEEEECCH---HHHHHHHHHHHHH
T ss_conf ----5785999978984999976388423---3799976899---9999999999985
No 7
>KOG0625 consensus
Probab=100.00 E-value=0 Score=729.80 Aligned_cols=539 Identities=55% Similarity=0.956 Sum_probs=500.2
Q ss_pred CEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 13520787678888767420450544417899999999997546---548838999647678689999999999978987
Q gi|254781107|r 3 CTIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD---CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFA 79 (542)
Q Consensus 3 ~~~~~~~~~~~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~---~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~ 79 (542)
...||++||+++|-||+|+|-++-.|..+.++++|+|++.++.. .++.+.|||.|.|+.+.+..+.++++-++||+.
T Consensus 5 i~tvpTkpyegQKpGTSGLRKkvkvF~qpnY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~~~a~~~I~~iaAaNGv~ 84 (558)
T KOG0625 5 IETVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYYNKEAIQIIAKIAAANGVG 84 (558)
T ss_pred EEECCCCCCCCCCCCCCCHHHCCEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88625776578899850001115020477448999999985366434568569974787421588999999998526851
Q ss_pred EEEECCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9996789806507999999850-898179995765798988777358736878657867988999999740500013444
Q gi|254781107|r 80 RIIIGKGGILSTPAVSHLIRKY-KASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEAN 158 (542)
Q Consensus 80 V~~~~~~gi~PTP~~~~av~~~-~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~ 158 (542)
.++++.+|+++||++|..+|++ .+.|||+.||||||-..+.|-||||.-++|+|+++..++.|.+..+.+..+.+....
T Consensus 85 rlivGqnG~LSTPAvS~iIRk~~~a~GgiILTASHNPGGP~~DfGIKfN~~NGGPAPesvTdkIy~itk~i~eYki~~~~ 164 (558)
T KOG0625 85 RLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDP 164 (558)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 58863587036567888987632257628997246899998764248746789988478889999875112211431677
Q ss_pred CCCHHHCCHHCC-CCCEEEEEEECHHHHHHHHHCCCCHHHHCCCC--CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 687121031002-57505898402226754332078032200133--784699850355440122111231058501233
Q gi|254781107|r 159 DVDINHIGTKEL-ANMTISVIDPIENYVALMENIFDFDAIRKLLS--FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235 (542)
Q Consensus 159 ~~~~~~~~~~~~-~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~--~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~ 235 (542)
.+++..++.... .+..++.+|.+.+|+++|++++||+.||..++ +++++.+|+|||+.++|..+||++.||++-.++
T Consensus 165 ~iDls~vG~~~~~gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~~~~~k~~~DamhGvtGpY~~~IfvdelGa~~~~~ 244 (558)
T KOG0625 165 KIDLSTVGKTSFDGPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSL 244 (558)
T ss_pred CCCHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf 77755514310148716998451999999999974789999986589883699751136653013567676509996885
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCC-CC
Q ss_conf 20157875476446854222104788861225860789864887456885388-72274659999999998720204-78
Q gi|254781107|r 236 RNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKG-IFVNPSDSLAIMVANAGLIPGYA-TG 313 (542)
Q Consensus 236 ~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~g-~~i~~~d~l~ll~~~~~~~~~~~-~~ 313 (542)
.||.|.++|++.||||+.+.+.+|...+. ..+.|+|.|+||||||-+|.+.+ -|++|.|.++++++|+..++... .+
T Consensus 245 ~n~~Pl~DFGG~HPDPNLTYAk~LV~rv~-~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~G 323 (558)
T KOG0625 245 QNCVPLEDFGGGHPDPNLTYAKDLVDRVD-RGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQG 323 (558)
T ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHCCHHHHCC
T ss_conf 05705622479998985056999999861-47876543236887621464058525466412999873002165566537
Q ss_pred CCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 71687531083799998404761599828632665421026973886211230134742157516789999999972468
Q gi|254781107|r 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGE 393 (542)
Q Consensus 314 ~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la~~gk 393 (542)
...+++|+.||.++|++|++.|.+++|||+||||.+++|..++..++||||+|++++|+|+|||+++.|.||.+||..++
T Consensus 324 v~GfARSmPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgklsiCGEESFGTGSdHIREKDGiWAvlaWlsIlA~~k~ 403 (558)
T KOG0625 324 VKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHNKQ 403 (558)
T ss_pred CCHHHHCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 43021048840578999997098447668418887766435530041453456776322022533458999999976045
Q ss_pred C-HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCCCC-C---CEEHHHHHHHCCCCCCCCCCCC
Q ss_conf 8-8999988998829661211001368778999999999987753-1652115-6---4201000000011346773746
Q gi|254781107|r 394 S-LLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKN-LIGSSFI-G---QKIKQAGDFVYTDSTNGNVSDK 467 (542)
Q Consensus 394 ~-l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~---~~v~~~~d~~~~~~~~~~i~~~ 467 (542)
+ +-|++.+.|++||++||.|+||+.+..+.+.++|+.+++.+.+ .....+. + .+|..+.||.|.+..++++++.
T Consensus 404 ~~vedI~~~~W~~YGR~fftRYDYE~~e~e~ank~m~~l~a~~~~~~vg~~~~~~~~~y~V~~ad~F~Y~DPvDGSvs~~ 483 (558)
T KOG0625 404 NVVEDIVKEHWAKYGRNFFTRYDYEEVEAEGANKMMEDLEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVSKK 483 (558)
T ss_pred CCHHHHHHHHHHHHCCCCEEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCC
T ss_conf 51999999999985744243135310470668999999998715221242026788448999648712548878631014
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 708999889919999758888785589999995289978999999999999999999985066883789997579
Q gi|254781107|r 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSIAS 542 (542)
Q Consensus 468 dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~ 542 (542)
||+|+.|+||||+.+|.|||-..-..||+|+|+++++..+...+.|..|+.+|+.+++++++++||||.+|||+|
T Consensus 484 QGlri~F~dGsR~VfRLSGTGSsGATiRLYie~ye~d~s~~~~~aq~~LkPli~~alk~~~~~e~tGr~~PTViT 558 (558)
T KOG0625 484 QGLRIVFEDGSRIVFRLSGTGSSGATIRLYIESYEKDVSKIDQDAQVALKPLIDIALKISKLKEFTGREAPTVIT 558 (558)
T ss_pred CCEEEEECCCCEEEEEECCCCCCCCEEEEEEHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 746999707968999954678888269976012166544407577898878999999987677864889980019
No 8
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=686.86 Aligned_cols=436 Identities=25% Similarity=0.324 Sum_probs=348.4
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 88767420450544417899999999997546--5488389996476786899999999999789879996789806507
Q gi|254781107|r 15 KPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD--CAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTP 92 (542)
Q Consensus 15 ~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~--~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP 92 (542)
-|||+||||++|..+++.++.+++++++..+. ..+++|+||||+|++|++|+++++++|+++|++|+. .|++|||
T Consensus 1 ~f~t~GiRG~~~~~lt~~~~~~~g~a~~~~l~~~~~~~~VvVg~D~R~~s~~~~~~~a~gl~s~G~~V~~---~g~~pTP 77 (445)
T cd05803 1 IISISGIRGIVGEGLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVID---LGIAPTP 77 (445)
T ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---CCCCCHH
T ss_conf 9873625301899979999999999999999974899849999699866899999999999977984998---8988738
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCC
Q ss_conf 99999985089817999576579898877735873687865786798899999974050001344468712103100257
Q gi|254781107|r 93 AVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELAN 172 (542)
Q Consensus 93 ~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (542)
+++|+++++++++||||||||||++|| |||||+++|.++.++..++|++....-.. ....+...+.
T Consensus 78 ~~~~~v~~~~~~~GI~ITASHNP~~~N---GiK~~~~~G~~i~~~~~~~I~~~~~~~~~------~~~~~~~~~~----- 143 (445)
T cd05803 78 TVQVLVRQSQASGGIIITASHNPPQWN---GLKFIGPDGEFLTPDEGEEVLSCAEAGSA------QKAGYDQLGE----- 143 (445)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCC---CCEECCCCCEECCHHHHHHHHHHHHCCCC------CCCCCCCCCC-----
T ss_conf 999999855998589999578884224---42203788806788999999999867776------6665023674-----
Q ss_pred CEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 50589840222675433207803220013378469985035544012211123105850123320157875476446854
Q gi|254781107|r 173 MTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPN 252 (542)
Q Consensus 173 ~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~ 252 (542)
.....|..+.|++.+.+.++.+..+ ...++++|++||+||+++.+++.+| +.||+.++.+ ++.||++|| +.|+|.
T Consensus 144 -~~~~~~~~~~yi~~~~~~~~~~~~~-~~~~~~kIvvd~~~G~~~~~~~~il-~~lG~~vi~~-~~~pdg~Fp-~~p~p~ 218 (445)
T cd05803 144 -VTFSEDAIAEHIDKVLALVDVDVIK-IRERNFKVAVDSVNGAGGLLIPRLL-EKLGCEVIVL-NCEPTGLFP-HTPEPL 218 (445)
T ss_pred -EEECCCHHHHHHHHHHHCCCCCHHH-HCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEC-CCCCCCCCC-CCCCCC
T ss_conf -5634417999999998306633344-2348988999899887999999999-9739807980-555899887-899788
Q ss_pred CCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 22210478886122586078986488745688538-87227465999999999872020478716875310837999984
Q gi|254781107|r 253 LIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVA 331 (542)
Q Consensus 253 ~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia 331 (542)
.+++..+. +.+++.++|+|+|+||||||++++|+ |+++.++.+++++..+++.... ....||+|++||.+++++|
T Consensus 219 ~e~l~~l~-~~v~~~~adlgia~DgDaDR~~ivd~~G~~~~~d~~~~l~~~~l~~~~~---~~~~vv~t~~ss~~~~~ia 294 (445)
T cd05803 219 PENLTQLC-AAVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGG---RKGPVVVNLSTSRALEDIA 294 (445)
T ss_pred HHHHHHHH-HHHHHCCCCEEEEECCCCCEEEEECCCCCEECCHHHHHHHHHHHHHHCC---CCCCEEECHHHHHHHHHHH
T ss_conf 89999999-9998569867999879887689997999677813999999999996388---8884463378875799999
Q ss_pred CCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCE
Q ss_conf 0476159982863266542102697388621123013-474215751678999999997246888999988998829661
Q gi|254781107|r 332 EKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNY 410 (542)
Q Consensus 332 ~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~ 410 (542)
+++|+++++|+||||||++.|.+.+++||||+|+|+. +.+.++|||++++++++++++.++++|+++++++++.|
T Consensus 295 ~~~g~~~~~t~vG~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~~~~~ile~la~~~~~l~~l~~~~p~~~---- 370 (445)
T cd05803 295 RKHGVPVFRSAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPLSEIVDELPQYY---- 370 (445)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC----
T ss_conf 9840766998444499999999669878871658786256431888899999999999984999999998614432----
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 21100136877899999999998775316521156420100000001134677374670899988991999975888878
Q gi|254781107|r 411 YSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTE 490 (542)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk 490 (542)
+.+ ....++.+....++..+.+.+.+ ..+..+||+|+.++|+ |+++|||||||+
T Consensus 371 ~~~-~~~~~~~~~~~~i~~~l~~~~~~------------------------~~~~~~DGik~~~~dg-wiliRpSgTEP~ 424 (445)
T cd05803 371 ISK-TKVTIAGEALERLLKKLEAYFKD------------------------AEASTLDGLRLDSEDS-WVHVRPSNTEPI 424 (445)
T ss_pred CCC-EEEECCHHHHHHHHHHHHHHHHC------------------------CCCCCCCEEEEECCCE-EEEEECCCCCEE
T ss_conf 211-24415620199999999875101------------------------5630146389975988-999981198116
Q ss_pred CCEEEEEEEECCCCHHHHH
Q ss_conf 5589999995289978999
Q gi|254781107|r 491 NSTLRVYIDNYEPDSSKHL 509 (542)
Q Consensus 491 ~~~iRiy~E~~~~~~~~~l 509 (542)
||||+|+.+++.++.|
T Consensus 425 ---iriy~Ea~~~e~a~~l 440 (445)
T cd05803 425 ---VRIIAEAPTQDEAEAL 440 (445)
T ss_pred ---EEEEEEECCHHHHHHH
T ss_conf ---8999975999999999
No 9
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=671.45 Aligned_cols=437 Identities=26% Similarity=0.372 Sum_probs=355.1
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 78888767420450544417899999999997546548-83899964767868999999999997898799967898065
Q gi|254781107|r 12 QDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAE-KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILS 90 (542)
Q Consensus 12 ~~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~~-~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~P 90 (542)
+.+.|||+||||+++...++.++.++++++++.+.... ++|+||||+|.+|++|+.+++.+|+++|++|+.+ |++|
T Consensus 6 ~~~~FGT~GiRG~~~~~lt~~~~~~~g~a~~~~l~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~---g~~p 82 (464)
T COG1109 6 KKLLFGTDGIRGVAGEELTPEFALKLGRALGSVLRKKGAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDL---GLVP 82 (464)
T ss_pred CCCEECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CCCC
T ss_conf 4651678763220056679999999999999984025897499992798780999999999999889869995---8878
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCC
Q ss_conf 07999999850898179995765798988777358736878657867988999999740500013444687121031002
Q gi|254781107|r 91 TPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKEL 170 (542)
Q Consensus 91 TP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (542)
||+++|+++++++++||||||||||++|| |||+|+++|.|+.++.++.|++...+.. ......+ .
T Consensus 83 TP~v~f~~~~~~~~~gimITASHNP~~yN---GiK~~~~~G~~i~~~~e~~Ie~~~~~~~-----~~~~~~~-------~ 147 (464)
T COG1109 83 TPAVAFATRKLGADAGVMITASHNPPEYN---GIKFFGSDGGKISDDIEEEIEAILAEEV-----DLPRPSW-------G 147 (464)
T ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCHHC---EEEEECCCCCCCCHHHHHHHHHHHHCCC-----CCCCCCC-------C
T ss_conf 48999999864997369995689993347---6999869986898899999999871554-----4555541-------2
Q ss_pred CCCEEEEEE-ECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 575058984-0222675433207803220013378469985035544012211123105850123320157875476446
Q gi|254781107|r 171 ANMTISVID-PIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHP 249 (542)
Q Consensus 171 ~~~~~~~~d-~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~P 249 (542)
..+.+...+ ..+.|++++.+.++.+ ...+++||++||+||+++.+++++| +.||+.++.+ ++.|||+||++.|
T Consensus 148 ~~g~~~~~~~~~~~Y~~~i~~~~~~~----~~~~~lkVv~d~~nGaa~~~~~~ll-~~lG~~vv~~-~~~pDg~fp~~~p 221 (464)
T COG1109 148 ELGRLKRIPDALDRYIEFIKSLVDVD----LKLRGLKVVVDCANGAAGLVAPRLL-KELGAEVVSI-NCDPDGLFPNINP 221 (464)
T ss_pred CCCCCEECHHHHHHHHHHHHHHCCCC----CCCCCCEEEEECCCCCHHHHHHHHH-HHCCCEEEEE-CCCCCCCCCCCCC
T ss_conf 36740112668999999999864542----2446877999789872367799999-9769869985-4636886788898
Q ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 85422210478886122586078986488745688538-87227465999999999872020478716875310837999
Q gi|254781107|r 250 DPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALD 328 (542)
Q Consensus 250 nP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~ 328 (542)
||+++++.+|...+.. .++|+|+||||||||++++|+ |.++++++++++++.|++.....+ .||+|++||.+++
T Consensus 222 ~p~~~~~~~l~~~v~~-~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~ll~~~~~~----~vV~tv~ss~~~~ 296 (464)
T COG1109 222 NPGETELLDLAKAVKE-HGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLP----TVVTTVMSSLALE 296 (464)
T ss_pred CCCCCHHHHHHHHHHH-CCCCEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCCCC----EEEEECCCCHHHH
T ss_conf 9984039999999971-7997899976998669999589978772799999999999657887----4999524757899
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH-HHHHH
Q ss_conf 9840476159982863266542102697388621123013-474215751678999999997246888999988-99882
Q gi|254781107|r 329 RVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHK-HWATY 406 (542)
Q Consensus 329 ~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~e-l~~~y 406 (542)
++++.+|+++++|+||||||++.|.+.+++||||+|+|+. ..|.+++||+++++++++++++.++++++++.+ +++.|
T Consensus 297 ~i~~~~g~~~~~t~vG~k~i~~~~~~~~~~~ggE~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~~lsel~~~~~~~~~ 376 (464)
T COG1109 297 KIAKKLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKYP 376 (464)
T ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99998499189955666999999985497786147563886788899519999999999999858987799997644422
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 96612110013687789999999999877531652115642010000000113467737467089998899199997588
Q gi|254781107|r 407 GRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISG 486 (542)
Q Consensus 407 G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSG 486 (542)
+. .+.+.......+. ..+.+...+.+.. ..+.++||+|+.|+||+|.++||||
T Consensus 377 ~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~idgv~~~~~~g~~~lvRpSG 429 (464)
T COG1109 377 QS---VEINVRVTDEGKA-EVLEKLLEELREA-----------------------KKVDTIDGVKVELEDGGRVLVRPSG 429 (464)
T ss_pred CC---CEEEEEECCCCHH-HHHHHHHHHCCCC-----------------------CEEECCCEEEEEECCCCEEEEEECC
T ss_conf 66---3577875574204-6899999856233-----------------------4030033399990799589998379
Q ss_pred CCCCCCEEEEEEEECCCCHHH
Q ss_conf 887855899999952899789
Q gi|254781107|r 487 TDTENSTLRVYIDNYEPDSSK 507 (542)
Q Consensus 487 TEPk~~~iRiy~E~~~~~~~~ 507 (542)
|||+ +|||+|+.+++.++
T Consensus 430 TEP~---lrvy~Ea~~~~~~~ 447 (464)
T COG1109 430 TEPL---IRVYVEAKDEELAE 447 (464)
T ss_pred CCEE---EEEEEEECCHHHHH
T ss_conf 9808---99999838989999
No 10
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=691.79 Aligned_cols=490 Identities=27% Similarity=0.372 Sum_probs=425.4
Q ss_pred EECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHC------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 2078767888876742045054441789999999999754------6548838999647678689999999999978987
Q gi|254781107|r 6 VPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNV------DCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFA 79 (542)
Q Consensus 6 ~~~~~~~~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~------~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~ 79 (542)
-|+|+.+.++|||||.||.. ....|.+.+++||.|++ ++..+|++||+||...|+.....+.+||++|||+
T Consensus 32 d~~n~a~~V~FGTSGHRGsA---~~~tFNE~HILAi~QAv~~~R~~~G~TGP~y~G~DtHaLSEPA~~s~LEVLaAN~v~ 108 (553)
T TIGR01132 32 DPGNLAQKVEFGTSGHRGSA---LKGTFNEAHILAITQAVVDYRAAQGITGPLYIGKDTHALSEPAFVSALEVLAANQVE 108 (553)
T ss_pred CCCCHHHHCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 97784442035788765345---778766478999999999999727820351116775425406899999998746725
Q ss_pred EEEE---CCCCCCCCHHHHHHHHHHC------CCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9996---7898065079999998508------981799957657989887773587368786578679889999997405
Q gi|254781107|r 80 RIII---GKGGILSTPAVSHLIRKYK------ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKIT 150 (542)
Q Consensus 80 V~~~---~~~gi~PTP~~~~av~~~~------~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~ 150 (542)
|++- +..+++|||++||||..++ .+.||+||.||||| +|.|||++.++|||+.++.|+.|++++|+++
T Consensus 109 ~~v~tat~~~ryTPTPavS~AILtyN~G~~~~lADGIviTPSHNPP---~DGGiKYNPP~GGPA~~~~T~~i~~RAN~~l 185 (553)
T TIGR01132 109 VIVQTATENNRYTPTPAVSHAILTYNKGRKEALADGIVITPSHNPP---EDGGIKYNPPNGGPADTEATQAIEDRANELL 185 (553)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC---CCCCEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8884022478888964665788741267887765614775877747---8867640774458886688899999999999
Q ss_pred CCCCCCCCCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 00013444687121031002575058984022267543320780322001337846998503554401221112310585
Q gi|254781107|r 151 SYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGA 230 (542)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~ 230 (542)
...+.-+++.++..... ....+..|++..|++.|.+++|+.+|++ .+|||.+||+.|++-.||.+|-.+ .+.
T Consensus 186 ~~~~~~VKRl~~~~A~~----s~~~~~~D~v~pYV~~L~~vvD~aaI~~---Agl~lGvDPLGGa~v~YW~~Ia~~-y~L 257 (553)
T TIGR01132 186 KAGLKGVKRLPLARALK----SETVKEHDLVKPYVDDLADVVDLAAIRK---AGLRLGVDPLGGAGVDYWKEIAEK-YNL 257 (553)
T ss_pred HHHCCCCCCCCHHHHHH----HHHHHHHCCCCCHHHCCCCEEEHHHHHH---CCCEECCCCCCCCCHHHHHHHHHH-HCC
T ss_conf 72237523232899986----5455543033221101111240667865---897772346777873678999987-578
Q ss_pred EEEEE-------EECCCCCCCCCCCCCCCCCCCCHHHHH--HHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHH
Q ss_conf 01233-------201578754764468542221047888--6122586078986488745688538-8722746599999
Q gi|254781107|r 231 PTGSV-------RNFIPLEDFGGCHPDPNLIHAKDLYDR--MMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIM 300 (542)
Q Consensus 231 ~~~~~-------~~~~pd~~F~~~~PnP~~~~~~~l~~~--~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll 300 (542)
....+ .+|+..+..|.+.+||+++.++.=..+ ...++.+||.+++|+|+||.|||+. .|.++||++|++.
T Consensus 258 ~lt~Vn~~vD~tf~FM~LD~DG~IRMDCSSp~AMAgL~~t~fG~~d~YdlAfgND~D~DRHGIVTP~~GLmNPNHyLaVa 337 (553)
T TIGR01132 258 DLTLVNPAVDPTFRFMTLDKDGKIRMDCSSPYAMAGLLATMFGLKDKYDLAFGNDPDYDRHGIVTPDEGLMNPNHYLAVA 337 (553)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHH
T ss_conf 64765544264100244468887744468777999999987205531001015778877673044887788841799999
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEE------CCCCCCC
Q ss_conf 9999872020478716875310837999984047615998286326654210269738862112301------3474215
Q gi|254781107|r 301 VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGT------GSNHSRE 374 (542)
Q Consensus 301 ~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~------~~~~~~d 374 (542)
+.||..+|..+.+..+|-||+|||.|||++....|.+++|+||||||+..-+.++.+-||||||.|. ++.|.+|
T Consensus 338 I~YLy~hR~~W~~~~AvGKTlVSSsmIDrVva~lgR~l~EVPVGFKWFVdGL~~g~fGFGGEESAGASFLr~dGt~W~TD 417 (553)
T TIGR01132 338 IEYLYSHRQQWSGDVAVGKTLVSSSMIDRVVADLGRQLVEVPVGFKWFVDGLLDGSFGFGGEESAGASFLRKDGTVWTTD 417 (553)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99998507775455000202133456766641358878886275034330110475576740122003230475802446
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHH
Q ss_conf 75167899999999724688899998899882966121100136877899999999998775316521156420100000
Q gi|254781107|r 375 KDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDF 454 (542)
Q Consensus 375 kDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~ 454 (542)
||||..+||.+||+|.+||++.+.++||.++||.++|+|++....+.||... .+| ....+...+++|..|+.
T Consensus 418 KDGiIm~LLAAEItAvTGk~P~~~Y~~La~~~G~p~Y~Ri~A~A~~~QK~~L--~kL--Spd~VsA~~LAGdaITA---- 489 (553)
T TIGR01132 418 KDGIIMCLLAAEITAVTGKNPQQHYDELAAKYGDPIYARIDAPATSAQKARL--KKL--SPDMVSATTLAGDAITA---- 489 (553)
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHH--HHC--CCCCCCHHHHCCCHHHH----
T ss_conf 4079999999889865178875789999998388300010245897789998--415--80000254524862578----
Q ss_pred HCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0011346773746708999889919999758888785589999995289978999999999999999999
Q gi|254781107|r 455 VYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQ 524 (542)
Q Consensus 455 ~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~ 524 (542)
....++||-..+.|||+.-+++ ||.-||||||- +.|||+|||. .++||.+++++++++|+.+.
T Consensus 490 -kLT~APGNgAaiGGLKVtT~~g-WFAARPSGTEd---vYKIYaESF~--g~~Hl~~i~~eA~~iV~~vl 552 (553)
T TIGR01132 490 -KLTKAPGNGAAIGGLKVTTANG-WFAARPSGTED---VYKIYAESFK--GEEHLKQIEKEAEEIVDEVL 552 (553)
T ss_pred -HHCCCCCCCCCCCCCEEECCCC-CEECCCCCCCC---CHHHECCCCC--CHHHHHHHHHHHHHHHHHHC
T ss_conf -6326787530006520012455-22037888613---1000000458--88899999999999999851
No 11
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=670.98 Aligned_cols=423 Identities=25% Similarity=0.343 Sum_probs=348.5
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH
Q ss_conf 87674204505444178999999999975465488389996476786899999999999789879996789806507999
Q gi|254781107|r 16 PGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVS 95 (542)
Q Consensus 16 FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~ 95 (542)
|||+||||+++..+++.++.++++++++.++ +++|+||||+|++|++|+++++.+|+++|++|+.+ |++|||+++
T Consensus 2 FGt~GiRG~~~~~~t~~~~~~l~~a~~~~~~--~~~vvIg~D~R~~s~~~~~~~~~gl~~~G~~V~~~---g~~pTP~~~ 76 (439)
T cd03087 2 FGTSGIRGVVGEELTPELALKVGKALGTYLG--GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDI---GIVPTPALQ 76 (439)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC---CCCCHHHHH
T ss_conf 4888510037999899999999999998808--98599995898458999999999999779969995---888839999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCCEE
Q ss_conf 99985089817999576579898877735873687865786798899999974050001344468712103100257505
Q gi|254781107|r 96 HLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175 (542)
Q Consensus 96 ~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (542)
|++++++ ++||||||||||++|| ||||++++|.|+.++.++.|++.+..- +.....+...+.. .
T Consensus 77 ~~v~~~~-~~Gi~ITASHNP~~~N---GiK~~~~~G~~i~~~~~~~Ie~~~~~~------~~~~~~~~~~g~~------~ 140 (439)
T cd03087 77 YAVRKLG-DAGVMITASHNPPEYN---GIKLVNPDGTEFSREQEEEIEEIIFSE------RFRRVAWDEVGSV------R 140 (439)
T ss_pred HHHHHHC-CCEEEEEECCCCHHHC---EEEEECCCCCCCCHHHHHHHHHHHHCC------CCCCCCHHHCCCE------E
T ss_conf 9999718-8169999458971118---089856888567999999999998469------9876786445835------8
Q ss_pred EEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89840222675433207803220013378469985035544012211123105850123320157875476446854222
Q gi|254781107|r 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH 255 (542)
Q Consensus 176 ~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~ 255 (542)
...+..+.|++.+.+.++.+. .++++|++||+||+++.+++.+| +.+|++++.+ |+.|||+||++.|+|..++
T Consensus 141 ~~~~~~~~Y~~~l~~~i~~~~-----~~~~kvvvD~~~G~~~~~~~~ll-~~lg~~v~~~-~~~~d~~fp~~~p~p~~~~ 213 (439)
T cd03087 141 REDSAIDEYIEAILDKVDIDG-----GKGLKVVVDCGNGAGSLTTPYLL-RELGCKVITL-NANPDGFFPGRPPEPTPEN 213 (439)
T ss_pred ECCHHHHHHHHHHHHHCCHHH-----CCCCEEEEECCCCCHHHHHHHHH-HHHCCCEEEE-CCCCCCCCCCCCCCCCHHH
T ss_conf 641279999999986458233-----27988999899870788999999-9819967998-4220897688799876889
Q ss_pred CCHHHHHHHCCCCCEEEEEECCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCC
Q ss_conf 1047888612258607898648874568853-887227465999999999872020478716875310837999984047
Q gi|254781107|r 256 AKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKL 334 (542)
Q Consensus 256 ~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd-~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~ 334 (542)
+ +...+++++.++|+|+|+||||||++++| +|+++++++++++++.|+++.. . ..||+|++||.+++++++++
T Consensus 214 l-~~~~~~v~~~~ad~gia~DgD~DR~~~vd~~G~~i~gd~i~~Lla~~ll~~~---~--~~vv~~v~ts~~~~~ia~~~ 287 (439)
T cd03087 214 L-SELMELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEEG---G--GKVVTPVDASMLVEDVVEEA 287 (439)
T ss_pred H-HHHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHC---C--CCEEEECCHHHHHHHHHHHH
T ss_conf 9-9999999843998799975987478998589759889999999999999768---9--98999463278999999981
Q ss_pred CEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 6159982863266542102697388621123013-474215751678999999997246888999988998829661211
Q gi|254781107|r 335 NLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSR 413 (542)
Q Consensus 335 g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~~~ 413 (542)
|+++++|+||||||++.|.+.+++||||+|+|+. ++|.+++||++++++++|+++. +++|+|+++++++ | ++.+
T Consensus 288 g~~~~~t~~G~k~i~~~~~~~~~~~g~E~sg~~~f~~~~~~~Dgi~a~~~~lel~~~-~~~Ls~~~~~~~~-~---~~~~ 362 (439)
T cd03087 288 GGEVIRTPVGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAE-EKPLSELLDELPK-Y---PLLR 362 (439)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHH-H---CEEE
T ss_conf 986301156749999999850825998366788626867788699999999999983-8999999987476-4---6223
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCE
Q ss_conf 00136877899999999998775316521156420100000001134677374670899988991999975888878558
Q gi|254781107|r 414 YDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENST 493 (542)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~ 493 (542)
.+ ..++.+....+|+.+.+.+.... ..+.++||+|+.|+|| |+++|||||||+
T Consensus 363 ~~-i~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~~iDGik~~~~dg-w~liRpSgTEp~--- 415 (439)
T cd03087 363 EK-VECPDEKKEEVMEAVEEELSDAD----------------------EDVDTIDGVRIEYEDG-WVLIRPSGTEPK--- 415 (439)
T ss_pred EE-EECCHHHHHHHHHHHHHHHHHCC----------------------CCCCCCCCEEEEECCE-EEEEECCCCCCE---
T ss_conf 78-98677769999999998623122----------------------6623565089983898-999981198126---
Q ss_pred EEEEEEECCCC
Q ss_conf 99999952899
Q gi|254781107|r 494 LRVYIDNYEPD 504 (542)
Q Consensus 494 iRiy~E~~~~~ 504 (542)
+|||+|+.+++
T Consensus 416 iriy~Ea~~~e 426 (439)
T cd03087 416 IRITAEAKTEE 426 (439)
T ss_pred EEEEEEECCHH
T ss_conf 89999849999
No 12
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352 This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=100.00 E-value=0 Score=679.11 Aligned_cols=423 Identities=23% Similarity=0.314 Sum_probs=339.7
Q ss_pred CCCCCCCEEEC-CCCCHHHHHHHHHHHHHHCC---CCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 87674204505-44417899999999997546---548--8389996476786899999999999789879996789806
Q gi|254781107|r 16 PGTSGLRKKVS-VFQQNSYTENFIQAIFNNVD---CAE--KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGIL 89 (542)
Q Consensus 16 FGT~GiRG~~~-~~~~~~~~~~~~~ai~~~~~---~~~--~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~ 89 (542)
||||||||++| ..+|+.++-.+..|.++.+. ... +.||||+|||.||+||..+.+++|.|.|++|+.+ |++
T Consensus 1 FGTDGvRG~An~~~lTae~al~LG~AaG~VL~~~~~~~~~~~VviGkDTR~SG~MlE~Al~AGL~s~G~~v~~l---G~~ 77 (450)
T TIGR01455 1 FGTDGVRGRANQEPLTAELALKLGAAAGRVLRRRGSRKSAPRVVIGKDTRLSGYMLENALVAGLTSAGVDVLLL---GPL 77 (450)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE---CCC
T ss_conf 99874031108876788999999899999974068889885689833788658899999998674078416885---577
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHCCHH
Q ss_conf 5079999998508981799957657989887773587368786578679889999997405-000134446871210310
Q gi|254781107|r 90 STPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKIT-SYQIIEANDVDINHIGTK 168 (542)
Q Consensus 90 PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (542)
|||+|+|.++++.|++||||+|||||+ .|||||||..+|.+++.+.+.+||+.+.+-. ... ...++-..++
T Consensus 78 PTPaVAyLT~~~~AdaGvmISASHNP~---~DNGIKfFg~~G~KL~D~~E~~IEa~l~~~~r~~~---~~~~~~~~lG-- 149 (450)
T TIGR01455 78 PTPAVAYLTRTLRADAGVMISASHNPY---EDNGIKFFGPEGFKLDDETEAAIEALLDEAAREDT---LLLVESEGLG-- 149 (450)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCC---CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCC--
T ss_conf 861688876640773336860467748---77774441767987988999999876314321677---7885612461--
Q ss_pred CCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC
Q ss_conf 02575058984022267543320780322001337846998503554401221112310585012332015787547644
Q gi|254781107|r 169 ELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCH 248 (542)
Q Consensus 169 ~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~ 248 (542)
....+.|..+.|++|+++-+. ++...++||||+||+|||++..+|.+| +.||+.++.+ +++|||. |++
T Consensus 150 ----~~~~~~da~~rY~~F~~~t~P----~~~~L~GLk~VlDCAnGAay~~AP~~F-~~LGAeViAi-~~~PdG~--NIN 217 (450)
T TIGR01455 150 ----RVKRVPDAVGRYIEFLKSTLP----RGLSLSGLKVVLDCANGAAYKVAPKVF-RELGAEVIAI-GVEPDGL--NIN 217 (450)
T ss_pred ----EECCCCHHHHHHHHHHHHHCC----CCCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEE-CCCCCCC--CCC
T ss_conf ----011664168999999998468----998878756876410423689999999-9719869998-0688863--224
Q ss_pred CCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
Q ss_conf 68542221047888612258607898648874568853-88722746599999999987202047871687531083799
Q gi|254781107|r 249 PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAAL 327 (542)
Q Consensus 249 PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd-~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i 327 (542)
-+|.+++...|. +.|++++|||||||||||||+++|| +|..|+|++++.++..++.+.-..+. + .||.|+||+..+
T Consensus 218 ~~cGSTH~~~Lq-~~V~E~~AdLGiAfDGDaDR~~~VD~~G~~VDGD~Il~~~A~~~~~~g~L~~-N-~vV~TvMsNlGl 294 (450)
T TIGR01455 218 DGCGSTHLEALQ-KAVRESGADLGIAFDGDADRVLAVDENGDIVDGDQILYIIARALKESGELAG-N-TVVATVMSNLGL 294 (450)
T ss_pred CCCCCCCHHHHH-HHHHHCCCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC-C-CEEHHHHHHHHH
T ss_conf 456867778899-8840203440100128845289880665954756899999999996057888-8-560678886999
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEE-CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9984047615998286326654210269738862112301-347421575167899999999724688899998899882
Q gi|254781107|r 328 DRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGT-GSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406 (542)
Q Consensus 328 ~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~-~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~y 406 (542)
++..++.|+++++|+||++||.+.|.+.++.+|||+||++ ..++.+..|||++||++++++.++|+||||++++| ..|
T Consensus 295 e~~L~~~G~~~~rtaVGDRYV~e~l~~~G~~LGGEQSGH~i~~D~~tTGDGivsALqvl~~m~~~G~~LSeL~~~~-~~~ 373 (450)
T TIGR01455 295 EKALEKLGIQLIRTAVGDRYVLEELREKGLNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSSLSELASEL-TKY 373 (450)
T ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHHCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCC-CCC
T ss_conf 9999847982898377687899999876975520136615550568860799999999999986289789995187-427
Q ss_pred CCCEEEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEC
Q ss_conf 96612110013687--7899999999998775316521156420100000001134677374670899988991999975
Q gi|254781107|r 407 GRNYYSRYDYLGIP--TEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRI 484 (542)
Q Consensus 407 G~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRp 484 (542)
++.- .+..... .+....-+..++..+.+.. + .+...+||++||
T Consensus 374 PQ~L---~NVrv~~r~~k~~~~e~P~v~~A~~~a~-~-------------------------------~lg~~GRillRp 418 (450)
T TIGR01455 374 PQVL---VNVRVEDRVGKEAAAEAPAVKAAIEDAE-A-------------------------------ELGGKGRILLRP 418 (450)
T ss_pred CCEE---EEEEEECCCCCCCCCCCHHHHHHHHHHH-H-------------------------------HHCCCCEEEEEC
T ss_conf 8207---8888726502474012348999999999-9-------------------------------843798089707
Q ss_pred CCCCCCCCEEEEEEEECCC
Q ss_conf 8888785589999995289
Q gi|254781107|r 485 SGTDTENSTLRVYIDNYEP 503 (542)
Q Consensus 485 SGTEPk~~~iRiy~E~~~~ 503 (542)
||||| +|||++|+.++
T Consensus 419 SGTEP---liRVMVEa~d~ 434 (450)
T TIGR01455 419 SGTEP---LIRVMVEAADE 434 (450)
T ss_pred CCCCC---CEEEEEECCCH
T ss_conf 89978---31688644887
No 13
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=0 Score=672.17 Aligned_cols=429 Identities=19% Similarity=0.202 Sum_probs=344.0
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH
Q ss_conf 87674204505444178999999999975465488389996476786899999999999789879996789806507999
Q gi|254781107|r 16 PGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVS 95 (542)
Q Consensus 16 FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~ 95 (542)
|||+||||+++..++++++.++++++++.+.. +++|+||||+|.+|++|+++++++|+++|++|+. .|++|||+++
T Consensus 2 Fgt~GiRG~~~~~lt~e~~~~ig~a~~~~~~~-~~~V~VG~D~R~ss~~l~~a~~~gl~~~G~~V~~---~g~~pTP~~~ 77 (441)
T cd05805 2 FGGRGVSGLINVDITPEFATRLGAAYGSTLPP-GSTVTVSRDASRASRMLKRALISGLLSTGVNVRD---LGALPLPVAR 77 (441)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---ECCCCHHHHH
T ss_conf 58874335528997999999999999998279-9989999689855899999999999986994999---0787718999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCCEE
Q ss_conf 99985089817999576579898877735873687865786798899999974050001344468712103100257505
Q gi|254781107|r 96 HLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175 (542)
Q Consensus 96 ~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (542)
|+++++++++||||||||||++|| |||||+++|.|+.++.+++|++....- +...+....++. ..
T Consensus 78 ~a~~~~~~~~GI~ITASHnp~~~n---GiK~~~~~G~~i~~~~~~~Ie~~~~~~------~~~~~~~~~~g~------~~ 142 (441)
T cd05805 78 YAIRFLGASGGIHVRTSPDDPDKV---EIEFFDSRGLNISRAMERKIENAFFRE------DFRRAHVDEIGD------IT 142 (441)
T ss_pred HHHHHCCCCEEEEEECCCCCHHCC---EEECCCCCCCCCCHHHHHHHHHHHHCC------CCCCCCHHHCCC------EE
T ss_conf 999855998389984478972004---352025678868989999999998343------223478644676------36
Q ss_pred EEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89840222675433207803220013378469985035544012211123105850123320157875476446854222
Q gi|254781107|r 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH 255 (542)
Q Consensus 176 ~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~ 255 (542)
...|..+.|++++.+.++.+.++. +++||++||+||+++.+++++| +.+|+.++.+ ++.||+.|| ..|+|..++
T Consensus 143 ~~~d~~~~Y~~~l~~~i~~~~i~~---~~~kVvvD~~nGa~~~~~~~il-~~lg~~v~~i-~~~~d~~~~-~~~~~~~~~ 216 (441)
T cd05805 143 EPPDFVEYYIRGLLRALDTSGLKK---SGLKVVIDYAYGVAGIVLPGLL-SRLGCDVVIL-NARLDEDAP-RTDTERQRS 216 (441)
T ss_pred ECCCHHHHHHHHHHHHCCHHHHHH---CCCEEEEECCCCCHHHHHHHHH-HHHCCEEEEE-CCCCCCCCC-CCCCCCCCC
T ss_conf 644179999999998649776731---5978999899974788999999-9829827995-256789999-899866012
Q ss_pred CCHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCC
Q ss_conf 10478886122586078986488745688538872274659999999998720204787168753108379999840476
Q gi|254781107|r 256 AKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLN 335 (542)
Q Consensus 256 ~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g 335 (542)
++...+++++.++|+|+|+||||||++++|+.+.+.++|.+..|+++++.... +. ..||.|++||.+++++++++|
T Consensus 217 -l~~l~~~v~~~~aDlGia~DgDgDR~~~vD~~G~~i~~d~l~~l~a~~~~~~~-~~--~~vv~~v~ss~~~~~i~~~~g 292 (441)
T cd05805 217 -LDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKSE-PG--GTVVVPVTAPSVIEQLAERYG 292 (441)
T ss_pred -HHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHC-CC--CCEEEEEECCHHHHHHHHHCC
T ss_conf -99999999835887688886998779999799968687899999999999846-89--977998757479999999819
Q ss_pred EEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 159982863266542102697388621123013-4742157516789999999972468889999889988296612110
Q gi|254781107|r 336 LKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRY 414 (542)
Q Consensus 336 ~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~~~~ 414 (542)
+++++|+||||||.+.|.+ +++||||+|+|+. ..|.+++||++++++++++++.++++|+|+++++++.| +.+.
T Consensus 293 ~~~~~t~vG~~~i~~~m~~-~~~~gge~sg~~~~~~~~~~~Dgi~~~l~lle~l~~~~~~ls~l~~~l~~~~----~~~~ 367 (441)
T cd05805 293 GRVIRTKTSPQALMEAALE-NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNISLSQIVDELPRFY----VLHK 367 (441)
T ss_pred CCEEEECCCHHHHHHHHHH-CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC----CCCC
T ss_conf 9669963638999999974-7764456665169447788835999999999999971998999998555641----5551
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEE
Q ss_conf 01368778999999999987753165211564201000000011346773746708999889919999758888785589
Q gi|254781107|r 415 DYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTL 494 (542)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~i 494 (542)
+ ..++.+....+|+.+.+..+. ..+..+||+|+.++|+ |+++|||||||+ |
T Consensus 368 ~-i~~~~~~k~~~~~~l~~~~~~------------------------~~~~~~DGik~~~~~g-wiliRpSgTEP~---l 418 (441)
T cd05805 368 E-VPCPWEAKGRVMRRLIEEAPD------------------------KSIELIDGVKIYEDDG-WVLVLPDADEPL---C 418 (441)
T ss_pred E-ECCCHHHHHHHHHHHHHHCCC------------------------CCEEECCEEEEECCCE-EEEEECCCCCEE---E
T ss_conf 1-038788999999999875723------------------------5720112279971988-999975188426---8
Q ss_pred EEEEEECCCCHHH
Q ss_conf 9999952899789
Q gi|254781107|r 495 RVYIDNYEPDSSK 507 (542)
Q Consensus 495 Riy~E~~~~~~~~ 507 (542)
|||+|+.+++.++
T Consensus 419 riy~Ea~~~e~~~ 431 (441)
T cd05805 419 HIYAEGSDQERAE 431 (441)
T ss_pred EEEEEECCHHHHH
T ss_conf 9999519999999
No 14
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=683.88 Aligned_cols=496 Identities=38% Similarity=0.545 Sum_probs=426.8
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHC--CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 35207876788887674204505444-1789999999999754--65488389996476786899999999999789879
Q gi|254781107|r 4 TIVPTVPYQDQKPGTSGLRKKVSVFQ-QNSYTENFIQAIFNNV--DCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFAR 80 (542)
Q Consensus 4 ~~~~~~~~~~l~FGT~GiRG~~~~~~-~~~~~~~~~~ai~~~~--~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V 80 (542)
.-+|++|||+++|||||+||.+-.+. +...+++++|+|.++. .+..++++||+|+|+.|++....+++++++||+.+
T Consensus 6 ~~~~t~p~~~~k~GTSG~R~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~aANgv~~ 85 (524)
T COG0033 6 KPDPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVLAANGVEV 85 (524)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 17999825404787766667655676678899999999999886168777548788864015899999999997358459
Q ss_pred EEECCCCCCCCHHHHHHHH----HHCCCEE-EEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9967898065079999998----5089817-9995765798988777358736878657867988999999740500013
Q gi|254781107|r 81 IIIGKGGILSTPAVSHLIR----KYKASGG-IILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQII 155 (542)
Q Consensus 81 ~~~~~~gi~PTP~~~~av~----~~~~~~G-ImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~ 155 (542)
++.++.|++|||++|++++ ++++-+| |+|||||||| +|.|||++.++|+|++++.++.|+++.+++.....
T Consensus 86 iv~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNPP---~D~GIKYN~~nGGPA~~~~T~aI~~ra~~~~k~~~- 161 (524)
T COG0033 86 IVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPP---EDGGIKYNPPNGGPAPEKVTDAIEARANDLYKIGL- 161 (524)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_conf 99468982576377778986055456657807975798995---44773057998998975789999999999987553-
Q ss_pred CCCCCCHHHCC-HHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 44468712103-10025750589840222675433207803220013378469985035544012211123105850123
Q gi|254781107|r 156 EANDVDINHIG-TKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGS 234 (542)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~ 234 (542)
.++..++ ...+....+..+|.+.+|++.|++++|+++|++. .+++++|+|||+++.|+.+|+++.++.+..+
T Consensus 162 ----~~v~r~~~~~~~~~~~v~~~D~v~~Yv~~l~~i~D~daIr~~---~~~l~~D~l~g~t~~Y~~~I~e~~~~~~t~v 234 (524)
T COG0033 162 ----LDVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFDFDAIRKA---GLRLGFDPLGGVTGPYWKAIAEKYLLNLTGV 234 (524)
T ss_pred ----CCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHCHHHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf ----374424443403763246633067798877886269999998---7640506566766256999999864880321
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCH---HHHHHHC-CCCCEEEEEECCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 320157875476446854222104---7888612-25860789864887456885388-722746599999999987202
Q gi|254781107|r 235 VRNFIPLEDFGGCHPDPNLIHAKD---LYDRMMM-HDSADFGAACDGDGDRSMILGKG-IFVNPSDSLAIMVANAGLIPG 309 (542)
Q Consensus 235 ~~~~~pd~~F~~~~PnP~~~~~~~---l~~~~~~-~~~aDlgiA~DgDaDR~~ivd~g-~~i~~~d~l~ll~~~~~~~~~ 309 (542)
..++.|.++|++++|||......+ +...+.+ .++.|+|.|.|||+||.+|++.+ ++++|+|.+++++.|+..++.
T Consensus 235 ~~~~~p~~~F~~l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~ 314 (524)
T COG0033 235 NQNVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRP 314 (524)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 05766573125879998875723748899976432202342125688766560245787545832799999999976777
Q ss_pred CCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCC--------CHHHH
Q ss_conf 0478716875310837999984047615998286326654210269738862112301347421575--------16789
Q gi|254781107|r 310 YATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKD--------GIWSI 381 (542)
Q Consensus 310 ~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkD--------gi~aa 381 (542)
++.+...|.+|++||.++|++++++|..++||||||||..+++.++++.||||||.| +.|+|+|| ++..+
T Consensus 315 ~~~g~~~v~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~~~~~GEESaG--a~~lRek~g~Wa~~~~~~Ila 392 (524)
T COG0033 315 YWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEESAG--ASFLREKGGVWATDKDGNILA 392 (524)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCCEEECCCCCCC--CCCEECCCCCEEEECHHHHHH
T ss_conf 545632111035527889999998588538747744122031025632124655545--201012797135610048999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCC
Q ss_conf 99999997246888999988998829661211001368778999999999987753165211564201000000011346
Q gi|254781107|r 382 LFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461 (542)
Q Consensus 382 l~~le~la~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~ 461 (542)
++-.|+.+..++...+.++++-++||.+.|.|++... +.+..+.++.. .++.+.+..+....+|.+.+..+
T Consensus 393 ll~aei~a~t~~~~~~~y~~~~r~~~~~~Yervda~a-----a~~~~a~L~~l----s~~~v~~t~l~g~~~~a~~~~~~ 463 (524)
T COG0033 393 LLAAEITAVTGKIPQEHYAELGRNFGRPDYERVDAEA-----ANAQKARLRKL----SPEMVSATTLAGDPITAYLTPAP 463 (524)
T ss_pred HHHHHCHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCH-----HHHHHHHHHHH----CCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 8750033654147789999999885751087753710-----07899999864----70337755257886400025799
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 773746708999889919999758888785589999995289978999999999999999999985
Q gi|254781107|r 462 GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRIS 527 (542)
Q Consensus 462 ~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~~~~ 527 (542)
++.+.++|||+.|++| ||..||||||- ++|||+|+++.++ ++.++|++++++|+.++++.
T Consensus 464 Gn~s~~~GLkV~~~ng-~fa~R~SGT~~---t~kiY~Esf~~~~--h~~~~q~~~~~iV~~~~~~a 523 (524)
T COG0033 464 GNGAAIGGLKVTTENG-WFAARPSGTEA---TYKIYAESFEGDE--HLKQIQKEAAEIVSEVLKIA 523 (524)
T ss_pred CCHHHCCCEEEEEECC-EEEEECCCCCH---HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHC
T ss_conf 8601017669996175-89983377641---3322346507837--78999999999999998543
No 15
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=0 Score=664.42 Aligned_cols=428 Identities=21% Similarity=0.245 Sum_probs=346.8
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
Q ss_conf 876742045054441789999999999754654-8838999647678689999999999978987999678980650799
Q gi|254781107|r 16 PGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCA-EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV 94 (542)
Q Consensus 16 FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~-~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~ 94 (542)
|||+||||++|..++++++.++++|++..+... .++|+||||+|++|++|+++++++|+++|++|+. .|++|||++
T Consensus 2 F~~~~IRG~~~~~~t~e~~~~l~~A~a~~l~~~~~~~Vvig~DtR~ss~~~~~a~~~gl~s~G~~V~~---~g~~pTP~~ 78 (443)
T cd03089 2 FRAYDIRGIAGEELTEEIAYAIGRAFGSWLLEKGAKKVVVGRDGRLSSPELAAALIEGLLAAGCDVID---IGLVPTPVL 78 (443)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---CCCCCHHHH
T ss_conf 88776423679996999999999999999987499979999699967899999999999977996999---798874999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCCE
Q ss_conf 99998508981799957657989887773587368786578679889999997405000134446871210310025750
Q gi|254781107|r 95 SHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMT 174 (542)
Q Consensus 95 ~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (542)
+|+++++++++||||||||||++|| |+||+.++| .+.++..++|++.+.+..... . ...+.
T Consensus 79 ~~~v~~~~~~~GI~ITASHNP~e~N---GiK~~~~~g-~~~~~~i~~i~~~~~~~~~~~--------~-------~~~g~ 139 (443)
T cd03089 79 YFATFHLDADGGVMITASHNPPEYN---GFKIVIGGG-PLSGEDIQALRERAEKGDFAA--------A-------TGRGS 139 (443)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCC---CEEEECCCC-CCCHHHHHHHHHHHHCCCCCC--------C-------CCCCE
T ss_conf 9999852897589997168987667---579988999-969899999999985678655--------5-------78981
Q ss_pred EEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 58984022267543320780322001337846998503554401221112310585012332015787547644685422
Q gi|254781107|r 175 ISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLI 254 (542)
Q Consensus 175 ~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~ 254 (542)
+...|..+.|++++.+.++. ..+++||++||+||+++.+++.+| +.+|+++..+ ++.|||+||+++|||+.+
T Consensus 140 ~~~~d~~~~Y~~~l~~~i~~------~~~~~kivvD~~~Ga~~~~~~~il-~~lG~~v~~i-~~~~Dg~f~~~~p~p~~~ 211 (443)
T cd03089 140 VEKVDILPDYIDRLLSDIKL------GKRPLKVVVDAGNGAAGPIAPQLL-EALGCEVIPL-FCEPDGTFPNHHPDPTDP 211 (443)
T ss_pred EEECCHHHHHHHHHHHHCCC------CCCCCEEEEECCCCCCHHEHHHHH-HHCCCEEEEC-CCCCCCCCCCCCCCCCCH
T ss_conf 89756499999999875474------557868999889985313438789-8759936433-666578889889898866
Q ss_pred CCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCC
Q ss_conf 210478886122586078986488745688538-8722746599999999987202047871687531083799998404
Q gi|254781107|r 255 HAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEK 333 (542)
Q Consensus 255 ~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~ 333 (542)
.+++...+.+++.++|+|+|+||||||++++|+ |+++++++++++++.|++... ++ ..||.|++||..+++++++
T Consensus 212 ~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~l~~d~i~~ll~~~~l~~~--~~--~~vV~~~~ss~~l~~~~~~ 287 (443)
T cd03089 212 ENLEDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRN--PG--ATIVYDVKCSRNLYDFIEE 287 (443)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC--CC--CCCCEEEEECHHHHHHHHH
T ss_conf 7899999998640442678875998779999799858189999999999999858--99--9511254312779999998
Q ss_pred CCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 76159982863266542102697388621123013-47-42157516789999999972468889999889988296612
Q gi|254781107|r 334 LNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SN-HSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYY 411 (542)
Q Consensus 334 ~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~-~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~ 411 (542)
+|+++++|+||||||.+.|.+.++.||||+||++. .. |....||++++++++++++.++++|+++++++++.|. .
T Consensus 288 ~g~~~~~t~vG~k~i~~~m~~~~~~~ggE~SGh~~~~e~~~~~~Dgi~a~l~ile~l~~~~~~l~~i~~~lp~~~~---~ 364 (443)
T cd03089 288 AGGKPIMWKTGHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGKTLSELLADLPKYFS---T 364 (443)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---C
T ss_conf 4894760277879999999851507998731318864656778729999999999999739999999986055058---7
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 11001368778999999999987753165211564201000000011346773746708999889919999758888785
Q gi|254781107|r 412 SRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTEN 491 (542)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~ 491 (542)
.++. ..++.+....+|+.+++.+.+.. ..+.++||+|+.|+|| |+++|||||||
T Consensus 365 ~~i~-~~~~~~~k~~~~~~l~~~~~~~~----------------------~~~~~~DGik~~~~dg-wvliRpSgTEP-- 418 (443)
T cd03089 365 PEIR-IPVTEEDKFAVIERLKEHFEFPG----------------------AEIIDIDGVRVDFEDG-WGLVRASNTEP-- 418 (443)
T ss_pred CEEE-EECCHHHHHHHHHHHHHHHHHCC----------------------CCCCCCCCEEEECCCE-EEEEEECCCCC--
T ss_conf 5574-30783769999999999765122----------------------5611456379974998-99998429863--
Q ss_pred CEEEEEEEECCCCHHH
Q ss_conf 5899999952899789
Q gi|254781107|r 492 STLRVYIDNYEPDSSK 507 (542)
Q Consensus 492 ~~iRiy~E~~~~~~~~ 507 (542)
++|||+|+.+++.++
T Consensus 419 -~lriy~Ea~~~e~ae 433 (443)
T cd03089 419 -VLVLRFEADTEEGLE 433 (443)
T ss_pred -EEEEEEEECCHHHHH
T ss_conf -789999659999999
No 16
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=664.56 Aligned_cols=419 Identities=23% Similarity=0.313 Sum_probs=330.5
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf 876742045054441789999999999754654--883899964767868999999999997898799967898065079
Q gi|254781107|r 16 PGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCA--EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPA 93 (542)
Q Consensus 16 FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~--~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~ 93 (542)
|||+||||+++..+++.++.++++++++.+... .++|+||||+|.+|++|+++++++|+++|++|+.+ |++|||+
T Consensus 2 FGT~GiRG~~~~~lt~~~~~~ig~a~~~~~~~~~~~~~Vvvg~D~R~~s~~~~~~~~~gl~s~G~~V~~~---g~~pTP~ 78 (434)
T cd05802 2 FGTDGIRGVANEPLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLL---GVIPTPA 78 (434)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC---CCCCHHH
T ss_conf 8999710036999999999999999999998469998699997999887999999999999869969991---8888599
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCC
Q ss_conf 99999850898179995765798988777358736878657867988999999740500013444687121031002575
Q gi|254781107|r 94 VSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANM 173 (542)
Q Consensus 94 ~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (542)
++|+++++++++||||||||||++|| |||||+++|.|+.++.+++|++.+...... ...+...+ .
T Consensus 79 ~~~~v~~~~~~~Gi~ITASHNP~~~N---GiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~------~~~~~~~~------~ 143 (434)
T cd05802 79 VAYLTRKLRADAGVVISASHNPFEDN---GIKFFSSDGYKLPDEVEEEIEALIDKELEL------PPTGEKIG------R 143 (434)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCC---CEEEECCCCCCCCHHHHHHHHHHHHCCCCC------CCCCCCCC------C
T ss_conf 99999964998138963688974028---489634678757989999999998378765------68601376------1
Q ss_pred EEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 05898402226754332078032200133784699850355440122111231058501233201578754764468542
Q gi|254781107|r 174 TISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNL 253 (542)
Q Consensus 174 ~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~ 253 (542)
.....|..+.|++++.+.++.+.+ +++||++||+||+++.+++.+| +.+|++++.+ |+.|||.|++. +|..
T Consensus 144 ~~~~~d~~~~Y~~~l~~~~~~~~~-----~~lkvvvD~~~Ga~~~~~~~il-~~lG~~v~~~-~~~pdg~~~n~--~~~~ 214 (434)
T cd05802 144 VYRIDDARGRYIEFLKSTFPKDLL-----SGLKIVLDCANGAAYKVAPEVF-RELGAEVIVI-NNAPDGLNINV--NCGS 214 (434)
T ss_pred EEECCCHHHHHHHHHHHHCCHHHH-----CCCEEEEECCCCCHHHHHHHHH-HHCCCCEEEE-CCCCCCCCCCC--CCCC
T ss_conf 688500699999999875881441-----5988999899861245699999-8729844774-25788776789--9898
Q ss_pred CCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHC
Q ss_conf 2210478886122586078986488745688538-872274659999999998720204787168753108379999840
Q gi|254781107|r 254 IHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAE 332 (542)
Q Consensus 254 ~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~ 332 (542)
.+...+. +.+++.++|+|+|+||||||++++|+ |.++++++++++++.|++.....+ ...||+|++||.+++++++
T Consensus 215 ~~p~~l~-~~v~~~~aDlgia~DgD~DR~~~vd~~G~~i~~d~l~~l~a~~~l~~~~~~--~~~vv~tv~ss~~l~~~~~ 291 (434)
T cd05802 215 THPESLQ-KAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLK--GNTVVGTVMSNLGLEKALK 291 (434)
T ss_pred CCHHHHH-HHHHHCCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCC--CCEEEEECCCCHHHHHHHH
T ss_conf 9979999-999855996788886998769999899978588999999999999850468--9879997344278999999
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEE-CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 47615998286326654210269738862112301-34742157516789999999972468889999889988296612
Q gi|254781107|r 333 KLNLKLFETPTGWKFFNNLLENGMITICGEESFGT-GSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYY 411 (542)
Q Consensus 333 ~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~-~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~ 411 (542)
++|+++++|+||||||++.|.+.+++||||+|||+ ..+|.+++||++++++++++|+.++++|+|++++++. |..
T Consensus 292 ~~g~~~~~t~vG~k~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~aal~ile~l~~~~~~ls~l~~~~~~-y~~--- 367 (434)
T cd05802 292 ELGIKLVRTKVGDRYVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASDMKL-YPQ--- 367 (434)
T ss_pred HCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH-CCC---
T ss_conf 7699899943724999999996697797415475774588868989999999999999839999999987544-102---
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 11001368778999999999987753165211564201000000011346773746708999889919999758888785
Q gi|254781107|r 412 SRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTEN 491 (542)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~ 491 (542)
...+.. .+.+.....+..+.. .+++++..++|++|++||||||||+
T Consensus 368 ~~~~~~-~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~d~~wvlvRpSgTEP~- 413 (434)
T cd05802 368 VLVNVR-VKDKKALLENPRVQA--------------------------------AIAEAEKELGGEGRVLVRPSGTEPL- 413 (434)
T ss_pred EEECEE-CCCCCCHHHHHHHHH--------------------------------HHHHHHHHCCCCEEEEEECCCCCEE-
T ss_conf 014604-376421120288999--------------------------------9999998617977999981598416-
Q ss_pred CEEEEEEEECCCC
Q ss_conf 5899999952899
Q gi|254781107|r 492 STLRVYIDNYEPD 504 (542)
Q Consensus 492 ~~iRiy~E~~~~~ 504 (542)
||||+|+.+++
T Consensus 414 --lriy~Ea~~~~ 424 (434)
T cd05802 414 --IRVMVEGEDEE 424 (434)
T ss_pred --EEEEEEECCHH
T ss_conf --89999769999
No 17
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=0 Score=663.83 Aligned_cols=437 Identities=22% Similarity=0.304 Sum_probs=336.7
Q ss_pred CCCCCCCCCCCEEECC-CCCHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 7888876742045054-441789999999999754654-88389996476786899999999999789879996789806
Q gi|254781107|r 12 QDQKPGTSGLRKKVSV-FQQNSYTENFIQAIFNNVDCA-EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGIL 89 (542)
Q Consensus 12 ~~l~FGT~GiRG~~~~-~~~~~~~~~~~~ai~~~~~~~-~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~ 89 (542)
|+-.|||+||||+++. .+++.++.++++|+++.+... .++|+||||+|.+|++|+++++++|+++|++|+. .|++
T Consensus 3 ~~~~FGT~GiRG~ig~~~~t~e~~~~~g~A~~~~l~~~~~~~VvVg~D~R~ss~~~~~a~~~gL~s~G~~V~~---~g~~ 79 (445)
T PRK10887 3 NRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLESALEAGLAAAGLSALF---TGPM 79 (445)
T ss_pred CCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---CCCC
T ss_conf 6677578881057589898999999999999999987699969999589988899999999999977990998---7878
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHC
Q ss_conf 50799999985089817999576579898877735873687865786798899999974050001344468712103100
Q gi|254781107|r 90 STPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE 169 (542)
Q Consensus 90 PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (542)
|||+++|+++++++++||||||||||++|| ||||++++|.++.++.++.|+..+++. ....++...+.
T Consensus 80 pTP~~~~a~~~~~~~~GImITASHNP~~~N---GiK~~~~~G~~~~~~~~~~ie~~~~~~-------~~~~~~~~~~~-- 147 (445)
T PRK10887 80 PTPAVAYLTRTFRAEAGIVISASHNPFYDN---GIKFFSIDGTKLPDDVEEAIEAEMEKE-------ITCVDSAELGK-- 147 (445)
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCHHHC---CEEEECCCCCCCCHHHHHHHHHHHHCC-------CCCCCHHHCCC--
T ss_conf 879999999845998589999578961317---757744889738688999999987166-------66676221475--
Q ss_pred CCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 25750589840222675433207803220013378469985035544012211123105850123320157875476446
Q gi|254781107|r 170 LANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHP 249 (542)
Q Consensus 170 ~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~P 249 (542)
.....|..+.|++++++.++.. + ..+++||++||+||+++.+++.+| +.+|+.+..+ +++|||.|++.+|
T Consensus 148 ----~~~~~d~~~~yi~~~~~~~~~~-~---~~~~lkVvvD~~nGa~~~~~~~ll-~~lg~~v~~i-~~~pdg~~~~~~~ 217 (445)
T PRK10887 148 ----ASRIVDAAGRYIEFCKGTFPNE-L---SLNELKIVVDCANGATYHIAPNVL-RELGATVIAI-GCEPNGVNINEEV 217 (445)
T ss_pred ----CEEECCHHHHHHHHHHHHCCCC-C---CCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEE-ECCCCCCCCCCCC
T ss_conf ----1010654999999998746431-1---457998999899887999999999-9869909996-1466888889898
Q ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 85422210478886122586078986488745688538-87227465999999999872020478716875310837999
Q gi|254781107|r 250 DPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALD 328 (542)
Q Consensus 250 nP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~ 328 (542)
.| .++..|. +.+++.++|+|+||||||||++++|+ |+++.+++++++++.|++...... ..||.|++||.+++
T Consensus 218 ~~--~~l~~l~-~~v~~~~aDlGia~DgDaDR~~~vDe~G~~i~~d~il~lla~~~l~~~~~~---~~vV~~~~ss~~~~ 291 (445)
T PRK10887 218 GA--TDVRALQ-ARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQLR---GGAVGTLMSNMGLE 291 (445)
T ss_pred CC--CCHHHHH-HHHHHHCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCC---CCEEEEECCCHHHH
T ss_conf 87--5889999-999840677799986998758999799978887899999999999848998---85787522651799
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEE-CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 984047615998286326654210269738862112301-3474215751678999999997246888999988998829
Q gi|254781107|r 329 RVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGT-GSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYG 407 (542)
Q Consensus 329 ~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~-~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG 407 (542)
++++++|+++++|+||||||++.|.+.+++||||+|||+ ..+|.+++||++++++++++++.++++|+++++++. .|.
T Consensus 292 ~~~~~~G~~~~~t~vG~~~I~~~m~e~~a~~GgE~SG~~~~~~~~~~~Dgi~a~l~ile~l~~~~~~l~~l~~~~~-~~p 370 (445)
T PRK10887 292 LALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMK-MFP 370 (445)
T ss_pred HHHHHCCCCEEECCCCHHHHHHHHHHHCCEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCC
T ss_conf 9999669915777845499999999729889976869861434588998999999999999974999999986413-116
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 66121100136877899999999998775316521156420100000001134677374670899988991999975888
Q gi|254781107|r 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGT 487 (542)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGT 487 (542)
.. +.+..+. ...+ ..+. ...+.. ..++++..|++++|+++|||||
T Consensus 371 ~~-~~~~~~~--~~~~-~~~~----------------~~~i~~---------------~~~~~~~~~~~~~wvLiR~SgT 415 (445)
T PRK10887 371 QI-LVNVRYT--AGSG-DPLE----------------HESVKA---------------VTAEVEAALGNRGRVLLRKSGT 415 (445)
T ss_pred HH-HCCEEEC--CCCC-CHHH----------------HHHHHH---------------HHHHHHHHHCCCEEEEEECCCC
T ss_conf 21-3021103--5656-5022----------------189999---------------9999999717983999973699
Q ss_pred CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8785589999995289978999999999999999
Q gi|254781107|r 488 DTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 (542)
Q Consensus 488 EPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~ 521 (542)
|| +||||+|+.+ ++.++++.+.+.+.|+
T Consensus 416 EP---~iRi~~Ea~s---~e~~~~l~~~~~~~Ik 443 (445)
T PRK10887 416 EP---LIRVMVEGED---EAQVTEFAHRIADAVK 443 (445)
T ss_pred CC---EEEEEEEECC---HHHHHHHHHHHHHHHH
T ss_conf 50---7999994399---9999999999999984
No 18
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=0 Score=655.74 Aligned_cols=436 Identities=19% Similarity=0.219 Sum_probs=342.6
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 6742045054441789999999999754654-883899964767868999999999997898799967898065079999
Q gi|254781107|r 18 TSGLRKKVSVFQQNSYTENFIQAIFNNVDCA-EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSH 96 (542)
Q Consensus 18 T~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~-~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~ 96 (542)
--+|||++|..++++++.++++|+++.+... .++|+||||+|.+|++|+++++++|+++|++|+. .|++|||+++|
T Consensus 3 ~ydIRGi~~~~lt~e~~~~~g~A~~~~l~~~~~~~Vvvg~D~R~ss~~~~~~~a~gl~~~Gi~V~~---~g~~pTP~l~~ 79 (445)
T PRK09542 3 AYDVRGLVGEELDEDFVRDVGAAFARLMRAEGATQVVIGHDMRDSSPELAAAFAEGVTAQGLDVVR---IGLASTDQLYF 79 (445)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---CCCCCHHHHHH
T ss_conf 744221059980999999999999999876699879999799856899999999999987990998---99898789999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCCEE
Q ss_conf 9985089817999576579898877735873687865786798-899999974050001344468712103100257505
Q gi|254781107|r 97 LIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQT-EDIFEESKKITSYQIIEANDVDINHIGTKELANMTI 175 (542)
Q Consensus 97 av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (542)
++++++++ |+||||||||++|| |||++..+|.++..+.. ..|.+.... . .... ......+
T Consensus 80 ~~~~~~~~-GimITASHNP~~~N---GiK~~~~~~~~~~~~~~~~~i~~~~~~---~--~~~~----------~~~~~~i 140 (445)
T PRK09542 80 ASGLLDCP-GAMFTASHNPAAYN---GIKLCRAGAKPVGQDTGLAAIRDDLIA---G--VPAY----------DGPPGTV 140 (445)
T ss_pred HHCCCCCC-EEEEECCCCCCCCC---EEEEECCCCCCCCCHHHHHHHHHHHHC---C--CCCC----------CCCCCEE
T ss_conf 85115887-69996688987677---599767999868820799999999866---9--9654----------5689704
Q ss_pred EEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 89840222675433207803220013378469985035544012211123105850123320157875476446854222
Q gi|254781107|r 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIH 255 (542)
Q Consensus 176 ~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~ 255 (542)
...|..+.|++++.+.+|.+.++ +++|++||+||+++.+++.+| +.||+.++.+ |+.|||+||++.|||..+.
T Consensus 141 ~~~d~~~~Y~~~l~~~vd~~~~~-----~lkIvvD~~~Ga~~~~~~~il-~~lg~~v~~l-~~~~dg~fp~~~p~P~~~~ 213 (445)
T PRK09542 141 TERDVLADYAAFLRSLVDLSGIR-----PLKVAVDAGNGMGGHTVPAVL-GGLPITLLPL-YFELDGTFPNHEANPLDPA 213 (445)
T ss_pred EECCHHHHHHHHHHHHCCHHHCC-----CCEEEEECCCCHHHHHHHHHH-HHCCCEECCC-CCCCCCCCCCCCCCCCCHH
T ss_conf 52345999999998657912147-----887999888847889999987-3469755245-6678999999898989999
Q ss_pred CCHHHHHHHCCCCCEEEEEECCCCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCC
Q ss_conf 1047888612258607898648874568853-887227465999999999872020478716875310837999984047
Q gi|254781107|r 256 AKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKL 334 (542)
Q Consensus 256 ~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd-~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~ 334 (542)
.+....+.+++.++|+|||+||||||++++| +|.++++++++++++.+++.. .++ ..||+|++||.+++++++++
T Consensus 214 ~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~i~~d~~~al~~~~~l~~--~~~--~~vv~~v~ts~~~~~~~~~~ 289 (445)
T PRK09542 214 NLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELAR--EPG--ATIIHNLITSRAVPELVAER 289 (445)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCEECHHHHHHHHHHHHHHH--CCC--CCCEEEEHHHHHHHHHHHHC
T ss_conf 99999999986499874015699875899989996857889999999999863--668--77234420667899999975
Q ss_pred CEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 6159982863266542102697388621123013-474215751678999999997246888999988998829661211
Q gi|254781107|r 335 NLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSR 413 (542)
Q Consensus 335 g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~~~ 413 (542)
|+++++|+||||||++.|.+.+++||||+|+|+. .+|.+.+||++++++++++++.++++|++++++++ +|.. ..+
T Consensus 290 g~~~~~t~vG~k~i~~~m~~~~~~~GgE~Sg~~~~~~~~~~~Dgi~aal~~l~~l~~~~~~lsel~~~~~-~y~~--~~~ 366 (445)
T PRK09542 290 GGTPVRTRVGHSFIKALMAETGAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDRPLSELMADYQ-RYAA--SGE 366 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCC-CCCC--CCE
T ss_conf 9989993784799999998649389996845687568788985999999999999975997899987540-0367--644
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCE
Q ss_conf 00136877899999999998775316521156420100000001134677374670899988991999975888878558
Q gi|254781107|r 414 YDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENST 493 (542)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~ 493 (542)
+...... ....++.+++.+... + .++.++||+|+.|+|++|+++|||||||+
T Consensus 367 i~~~~~~---~~~~~~~~~~~~~~~---------~-------------~~i~~~DGvki~~~d~~wvlvRpSgTEP~--- 418 (445)
T PRK09542 367 INSTVAD---APARMEAVLKAFGGR---------I-------------VSVDHLDGVTVDLGDGSWFNLRASNTEPL--- 418 (445)
T ss_pred EEEECCC---HHHHHHHHHHHHHHC---------C-------------CCEECCCCEEEEECCCCEEEEECCCCCCE---
T ss_conf 5442489---899999999873401---------2-------------45440363899947983899922499005---
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999528997899999999999999
Q gi|254781107|r 494 LRVYIDNYEPDSSKHLKNTQEMLSDLV 520 (542)
Q Consensus 494 iRiy~E~~~~~~~~~l~~~~~~l~~li 520 (542)
||||+|+.++ +..+++.+.+.++|
T Consensus 419 iRi~~Ea~~~---e~~~~l~~~~~~~v 442 (445)
T PRK09542 419 LRLNVEARTE---EEVDAVVDEVLAII 442 (445)
T ss_pred EEEEEEECCH---HHHHHHHHHHHHHH
T ss_conf 9999972999---99999999999997
No 19
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=0 Score=648.94 Aligned_cols=433 Identities=21% Similarity=0.254 Sum_probs=327.1
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
Q ss_conf 887674204505444178999999999975465--488389996476786899999999999789879996789806507
Q gi|254781107|r 15 KPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDC--AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTP 92 (542)
Q Consensus 15 ~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~--~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP 92 (542)
||||+||||+++. +++.++..+++++++.+.. .+++|+||||+|++|++|+++++++|+++|++|++ .|++|||
T Consensus 1 kFGT~GiRGi~~~-~t~~~v~~~~~a~a~~l~~~~~~~~VvVG~D~R~~S~~~a~~~a~~l~s~Gi~V~~---~g~~pTP 76 (459)
T cd03088 1 KFGTSGLRGLVTD-LTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVD---CGAVPTP 76 (459)
T ss_pred CCCCCCCCEECCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE---CCCCCHH
T ss_conf 9899870758588-99999999999999999975899869999689978799999999999977997997---8989858
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCC
Q ss_conf 99999985089817999576579898877735873687865786798899999974050001344468712103100257
Q gi|254781107|r 93 AVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELAN 172 (542)
Q Consensus 93 ~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (542)
+++|+++++++ +||||||||||++|| |||||+++| ++.++.+..|.+...+......... ..
T Consensus 77 ~l~~~v~~~~~-~gImITASHNP~eyN---G~K~~~~~G-~i~~~~e~~i~~~~~~~~~~~~~~~-------------~~ 138 (459)
T cd03088 77 ALALYAMKRGA-PAIMVTGSHIPADRN---GLKFYRPDG-EITKADEAAILAALVELPEALFDPA-------------GA 138 (459)
T ss_pred HHHHHHHHCCC-CEEEEECCCCCCCCE---EEEEECCCC-CCCHHHHHHHHHHHHHCCCCCCCCC-------------CC
T ss_conf 99999985468-639996578997543---899988999-6886889999999742003455544-------------57
Q ss_pred CEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 50589840222675433207803220013378469985035544012211123105850123320157875476446854
Q gi|254781107|r 173 MTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPN 252 (542)
Q Consensus 173 ~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~ 252 (542)
......|..+.|++.+.+.++.+.+ ++++|++||+||+++.+++++| +.+|+.++.+. ..++|+..+|+|.
T Consensus 139 ~~~~~~~~~~~Yi~~~~~~~~~~~~-----~~~~i~vd~~~g~g~~~~~~il-~~lG~~vi~l~---~~~~f~p~~~e~~ 209 (459)
T cd03088 139 LLPPDTDAADAYIARYTDFFGAGAL-----KGLRIGVYQHSSVGRDLLVRIL-EALGAEVVPLG---RSDTFIPVDTEAV 209 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHH-----CCCEEEEECCCCCHHHHHHHHH-HHCCCEEEEEC---CCCCCCCCCCCCC
T ss_conf 7400144799999999985573664-----5988999778850577889999-97498899957---8899999899999
Q ss_pred CCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHC
Q ss_conf 22210478886122586078986488745688538872274659999999998720204787168753108379999840
Q gi|254781107|r 253 LIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAE 332 (542)
Q Consensus 253 ~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~ 332 (542)
.++..++..+++++.++|+|||+||||||++++|+.+.+..+|.+++|+++++. ...|+++++||.++++ .
T Consensus 210 ~~e~~~~~~~~v~~~~aD~giA~DgDaDR~~vvD~~G~~l~gd~l~~L~a~~l~-------~~~vv~~v~s~~~~~~--~ 280 (459)
T cd03088 210 RPEDRALAAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG-------ADTVVTPVSSNSAIEL--S 280 (459)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHC-------CCEEEEEEECHHHHHH--H
T ss_conf 967999999999854887688645887602013799888373999999999865-------9916965741199997--1
Q ss_pred CCCEEEEECCCCHHHHHHHHCC-----CCEEEECCCCCEECC-CCC----------CCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 4761599828632665421026-----973886211230134-742----------157516789999999972468889
Q gi|254781107|r 333 KLNLKLFETPTGWKFFNNLLEN-----GMITICGEESFGTGS-NHS----------REKDGIWSILFWLNILAVRGESLL 396 (542)
Q Consensus 333 ~~g~~~~~t~vGfk~I~~~m~~-----~~~~~ggEeS~G~~~-~~~----------~dkDgi~aal~~le~la~~gk~l~ 396 (542)
..+.++++|+||||||.+.|.+ .+++||||+|+|+.. .++ ++|||++++++++++++.++++|+
T Consensus 281 ~~~~~v~~T~vG~~~i~~~m~~~~~~~~~~~~G~E~sgg~~~~~~~~~~~~~~~al~~rD~~~~~l~~l~~~~~~~~~l~ 360 (459)
T cd03088 281 GFFKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGIPLS 360 (459)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 78982699636679999999997632568289999748699898231486222030113479999999999987699899
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99988998829661211001368778999999999987753165211564201000000011346773746708999889
Q gi|254781107|r 397 DIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDN 476 (542)
Q Consensus 397 d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d 476 (542)
+++++++++|+ ++.++ ...|.++...+|+.+++........ +........++.++||+|+.|+|
T Consensus 361 ~l~~~l~~~~~--~~~~~--~~~p~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~DG~k~~~~d 424 (459)
T cd03088 361 ELVASLPARFT--ASDRL--QNFPTEKSQALIARLSADPEARAAF------------FFALGGEVASIDTTDGLRMTFAN 424 (459)
T ss_pred HHHHHHHHHCC--HHHHH--HCCCHHHHHHHHHHHHCCHHHHHHH------------HHHCCCCCCCCCCCCEEEEEECC
T ss_conf 99987002236--45776--3286778999999975067777544------------44202420320266628999469
Q ss_pred CEEEEEECCCCCCCCCEEEEEEEECCCCHH
Q ss_conf 919999758888785589999995289978
Q gi|254781107|r 477 HSRIIYRISGTDTENSTLRVYIDNYEPDSS 506 (542)
Q Consensus 477 ~~wiliRpSGTEPk~~~iRiy~E~~~~~~~ 506 (542)
|+|+++|||||||| ||||+|+.+++..
T Consensus 425 g~~l~iRpSgTEP~---iriy~Ea~t~e~~ 451 (459)
T cd03088 425 GDIVHLRPSGNAPE---LRCYVEADSEERA 451 (459)
T ss_pred CCEEEEECCCCCEE---EEEEEEECCHHHH
T ss_conf 80999975799388---9999973999999
No 20
>KOG1220 consensus
Probab=100.00 E-value=0 Score=620.25 Aligned_cols=504 Identities=21% Similarity=0.234 Sum_probs=380.7
Q ss_pred CCCCCCCCCCEEECCCCCH-------HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 8888767420450544417-------899999999997546548838999647678689999999999978987999678
Q gi|254781107|r 13 DQKPGTSGLRKKVSVFQQN-------SYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGK 85 (542)
Q Consensus 13 ~l~FGT~GiRG~~~~~~~~-------~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~ 85 (542)
.++|||+|+||.+..++.+ ++.++++.++.+.....+..||||||.|++|..||++++.+|..+|++|+++++
T Consensus 59 Ri~fgt~GlRg~m~agf~~mnel~~iq~~qg~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~~v~lf~~ 138 (607)
T KOG1220 59 RIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLLNGFKVYLFSE 138 (607)
T ss_pred CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 10243243324433575036689999987899999997477655238982377633277999999999767965998435
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC
Q ss_conf 98065079999998508981799957657989887773587368786578679889999997405000134446871210
Q gi|254781107|r 86 GGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHI 165 (542)
Q Consensus 86 ~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 165 (542)
++|||++.|++..++|++||||||||||++|| ||||||+||+|+.++++++|.+.+......... .+ +.+.+
T Consensus 139 --~v~TP~vpfav~~l~~dAgIMiTASHnPk~dN---GyKvYwsNG~qii~PhD~~I~~~~~~nl~p~~s-~w--d~slv 210 (607)
T KOG1220 139 --LVPTPFVPFAVLTLGADAGIMITASHNPKEDN---GYKVYWSNGAQIISPHDEKISDSIEANLEPRLS-SW--DDSLV 210 (607)
T ss_pred --CCCCCCCHHHHHHHCCCCEEEEECCCCCCCCC---CEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC-HH--HHHHH
T ss_conf --45787416678774567148995267852217---878994587605480237799999844676642-00--26677
Q ss_pred CHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE--EEEEECCCCCC
Q ss_conf 3100257505898402226754332078032200133784699850355440122111231058501--23320157875
Q gi|254781107|r 166 GTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT--GSVRNFIPLED 243 (542)
Q Consensus 166 ~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~--~~~~~~~pd~~ 243 (542)
....+..... .-.++.|.+.+++.++.-...-...+++++|++++||+|+.++..+|+ .+++.. .+..+++|||+
T Consensus 211 ~s~~l~~d~~--~~~~~~~~e~~k~~l~~~~~e~n~~s~~~fVyta~hGvG~~F~~~al~-~~~~~~~~~v~eq~~Pdp~ 287 (607)
T KOG1220 211 KSHPLLHDIL--AVIIPPYFEVYKELLPCFHREANPLSGLKFVYTAGHGVGGFFVKKALE-KLGLDTMISVPEQLEPDPM 287 (607)
T ss_pred HCCHHHCCCH--HCCCHHHHHHHHHCCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH-HHCCCCCCCCHHHCCCCCC
T ss_conf 5352321840--013667899998507507666345788518994687765788999999-8089852004032179999
Q ss_pred CCC-CCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC----CCCCCCHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 476-44685422210478886122586078986488745688538----8722746599999999987202047871---
Q gi|254781107|r 244 FGG-CHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK----GIFVNPSDSLAIMVANAGLIPGYATGLV--- 315 (542)
Q Consensus 244 F~~-~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~----g~~i~~~d~l~ll~~~~~~~~~~~~~~~--- 315 (542)
||+ +.||||++.+++++.+.+.++++|+++|+|||+||++++++ |+.+++|++.++|..+.+... ++..+
T Consensus 288 FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~--k~~~~~~~ 365 (607)
T KOG1220 288 FPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEH--KGSTPVQD 365 (607)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEECCCCCCEECCCHHHHHHHHHHHHHHC--CCCCCCCH
T ss_conf 9888998932177999999987504884899508974234520135785035163289999999999866--68885310
Q ss_pred -EEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHH----HCCCC-EEEECCCCCEECCC-CCCCCCCHHHHHHHHHHH
Q ss_conf -687531083799998404761599828632665421----02697-38862112301347-421575167899999999
Q gi|254781107|r 316 -GVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL----LENGM-ITICGEESFGTGSN-HSREKDGIWSILFWLNIL 388 (542)
Q Consensus 316 -~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~----m~~~~-~~~ggEeS~G~~~~-~~~dkDgi~aal~~le~l 388 (542)
.+..|.+||.++..||++.|++..+|+|||||+++. -++++ ..|++|||+|++.+ +..||||+++++.+++++
T Consensus 366 ~~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~ 445 (607)
T KOG1220 366 VSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMA 445 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 35566687889999999873833332144531666788998843764466613222754466752763088999999999
Q ss_pred HH----CCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH-HCCCCCCC-CCEEHHHHHHHCCCCCCC
Q ss_conf 72----4688899998899882966121100136877899999999998775-31652115-642010000000113467
Q gi|254781107|r 389 AV----RGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLK-NLIGSSFI-GQKIKQAGDFVYTDSTNG 462 (542)
Q Consensus 389 a~----~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~~v~~~~d~~~~~~~~~ 462 (542)
++ .+.+|++.+.+++++||++-....-+.....+..+.+.+.+|+-.. ...|..+. ...+....|..+.-..+.
T Consensus 446 ~~lr~~~~~sl~e~l~~l~e~yg~~~~~~~y~l~~~pe~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rdlT~g~d~s~ 525 (607)
T KOG1220 446 CRLRLAGNLSLSEVLEDLYERYGYHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYDVSS 525 (607)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECEEEEECCC
T ss_conf 99987148878899999998617640224789706995057899887633444566401123101455430323552488
Q ss_pred -------CC-CCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------73-74670899988991999975888878558999999528997899999999999999999998506688
Q gi|254781107|r 463 -------NV-SDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHY 532 (542)
Q Consensus 463 -------~i-~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~~~~~~~~~ 532 (542)
.+ ...+.|.+.+++++|+++|.|||||| |++|+|+..+..+..++.+-..+..+.+.+..--...++
T Consensus 526 ~d~ka~lpv~~ss~~vTf~~~~~~~~tlR~SgtePk---ik~yie~c~~~~~~~~~~l~~~~~~~~~~v~~~~~~p~~ 600 (607)
T KOG1220 526 PDHKAVLPVSTSSQMVTFTFNNGGVVTLRTSGTEPK---IKLYIEACLPPDAKSWERLIKLANLTTSAVVEELFRPQE 600 (607)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC---HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 888633543541123677515767999854888864---120197657863237899998999999999999606343
No 21
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=568.35 Aligned_cols=351 Identities=28% Similarity=0.457 Sum_probs=289.0
Q ss_pred HHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99789879996789806507999999850898179995765798988777358736878657867988999999740500
Q gi|254781107|r 73 AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSY 152 (542)
Q Consensus 73 l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~ 152 (542)
|.++|+++++.. +++|||+++++ +.+++.|||||||||||++|| |||||+++|+++.++.++.|++.+.+....
T Consensus 2 Fg~~Gir~~~~~--~~tP~~a~~~~-~~~g~~gGImITASHNP~~yN---GiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~ 75 (355)
T cd03084 2 FGTSGVRGVVGD--DITPETAVALG-QAIGSTGGIMITASHNPPEDN---GIKFVDPDGEPIASEEEKAIEDLAEKEDEP 75 (355)
T ss_pred CCCCCEEEEECC--CCCCHHHHHHH-HHHCCCEEEEEEECCCCCCCC---EEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 687886688579--98859999999-997898699997289993065---799985999889749999999997055444
Q ss_pred CCCCCCCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE
Q ss_conf 01344468712103100257505898402226754332078032200133784699850355440122111231058501
Q gi|254781107|r 153 QIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT 232 (542)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~ 232 (542)
. ..... ........|..+.|++++.+.++.+.++. .++||++||+||+++.+++++| +.+|+++
T Consensus 76 ~------~~~~~------~~~~~~~~d~~~~Y~~~l~~~~~~~~i~~---~~~kIvvD~~nG~~~~~~~~ll-~~lg~~v 139 (355)
T cd03084 76 S------AVAYE------LGGSVKAVDILQRYFEALKKLFDVAALSN---KKFKVVVDSVNGVGGPIAPQLL-EKLGAEV 139 (355)
T ss_pred C------CCCCC------CCCEEEECCHHHHHHHHHHHHCCHHHHHC---CCCEEEEECCCCCCCCHHHHHH-HHCCCEE
T ss_conf 5------66323------48736514469999999987669756505---7978999899985510159999-9729849
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 2332015787547644685422210478886122586078986488745688538-872274659999999998720204
Q gi|254781107|r 233 GSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYA 311 (542)
Q Consensus 233 ~~~~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~~ 311 (542)
+.+ |++|||+||+++|||+.++.+....+.+++.++|+|+|+||||||++++|+ |+++++++++++++.|+.+..+
T Consensus 140 ~~l-n~~~dg~f~~~~p~p~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~gd~~~~lla~~l~~~~~-- 216 (355)
T cd03084 140 IPL-NCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN-- 216 (355)
T ss_pred EEE-EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHCC--
T ss_conf 995-21158887767899887437999999975228878999659987799994897278844899999999997248--
Q ss_pred CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 787168753108379999840476159982863266542102697388621123013-4742157516789999999972
Q gi|254781107|r 312 TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAV 390 (542)
Q Consensus 312 ~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~~~dkDgi~aal~~le~la~ 390 (542)
....||+|++||.+++++++++|+++++|+||||||++.|.+.++.||||+|||+. ..|.+++||+++++++++++++
T Consensus 217 -~~~~VV~tv~ts~~i~~~~~~~g~~~~~t~vG~k~i~~~m~~~~~~~ggE~SGh~~~~~~~~~~Dgi~a~l~~le~la~ 295 (355)
T cd03084 217 -PRGGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN 295 (355)
T ss_pred -CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf -8982897101531679999983345444566769999876506828997265887526658688599999999999998
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 46888999988998829661211001368778999999999987753165211564201000000011346773746708
Q gi|254781107|r 391 RGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGI 470 (542)
Q Consensus 391 ~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGi 470 (542)
++++|+|+++++++.|. .+++
T Consensus 296 ~~~~lsel~~~l~~~~~----~~~~------------------------------------------------------- 316 (355)
T cd03084 296 LGKSLSELFSELPRYYY----IRLK------------------------------------------------------- 316 (355)
T ss_pred HCCCHHHHHHHHHHHCC----CEEC-------------------------------------------------------
T ss_conf 59599999985345251----2125-------------------------------------------------------
Q ss_pred EEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 9998899199997588887855899999952899789999999999999
Q gi|254781107|r 471 RVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDL 519 (542)
Q Consensus 471 k~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~l 519 (542)
-.+|+++||||||| +||||+|+.++ +.++++.+.++++
T Consensus 317 -----~~~w~lvRpSgTEP---~iRvy~Ea~~~---~~~~~l~~~~~el 354 (355)
T cd03084 317 -----VRGWVLVRASGTEP---AIRIYAEADTQ---EDVEQIKKEAREL 354 (355)
T ss_pred -----CCEEEEEEECCCCC---EEEEEEEECCH---HHHHHHHHHHHHH
T ss_conf -----86399996149983---89999965999---9999999999836
No 22
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=0 Score=390.74 Aligned_cols=369 Identities=19% Similarity=0.183 Sum_probs=216.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC------CCHHH-------CC--
Q ss_conf 8981799957657989887773587368786578679889999997405000134446------87121-------03--
Q gi|254781107|r 102 KASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEAND------VDINH-------IG-- 166 (542)
Q Consensus 102 ~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~------~~~~~-------~~-- 166 (542)
+...||||||||||++|| |||||+++|++++++.++.|++.++............ ..+.. ++
T Consensus 34 ~~~~GVmITASHNP~~dN---GiK~f~~~G~kL~~~~E~~ie~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIGRD 110 (513)
T cd03086 34 GKTIGVMITASHNPVEDN---GVKIVDPDGEMLEESWEPYATQLANASDDELLVLVLMLISVKELNIDLSVPANVFVGRD 110 (513)
T ss_pred CCCEEEEEECCCCCHHHC---CEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 981899998278990357---88798999882798999999997458755666665542112333023345650686215
Q ss_pred ------------HHCCCCCEEEEEE-------------------------ECHHHHHHHHHCCCC--HHHHCCCCCCCEE
Q ss_conf ------------1002575058984-------------------------022267543320780--3220013378469
Q gi|254781107|r 167 ------------TKELANMTISVID-------------------------PIENYVALMENIFDF--DAIRKLLSFGFRI 207 (542)
Q Consensus 167 ------------~~~~~~~~~~~~d-------------------------~~~~Y~~~l~~~~d~--~~i~~~~~~~l~I 207 (542)
...+...-...+| ..+.|.+++.+.++. ........++++|
T Consensus 111 tR~Sg~~L~~av~~gl~s~g~~v~d~G~~tTP~l~y~V~~~n~~~~~~~~~~~~y~~~~~~~f~~l~~~~~~~~~~~~kv 190 (513)
T cd03086 111 TRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAANTEGAYGEPTEEGYYEKLSKAFNELYNLLQDGGDEPEKL 190 (513)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 77667999999998887629758862322781487887761565555665256799999999999863344456788879
Q ss_pred EEEECCCCCHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCCCCC---CCHHHHHHHCCCCCEEEEEECCCCCEE
Q ss_conf 9850355440122111231058--50123320157875476446854222---104788861225860789864887456
Q gi|254781107|r 208 DIDCMNAVTGPYAKEILERKLG--APTGSVRNFIPLEDFGGCHPDPNLIH---AKDLYDRMMMHDSADFGAACDGDGDRS 282 (542)
Q Consensus 208 vvD~~nGa~~~~~~~il~~~lg--~~~~~~~~~~pd~~F~~~~PnP~~~~---~~~l~~~~~~~~~aDlgiA~DgDaDR~ 282 (542)
++||+||+++..++++++ .++ ..+..+ ++.+++ ....+.+|.... ...+....+....+|+++||||||||+
T Consensus 191 vvD~aNG~a~~~~~~l~~-~l~~~~~v~v~-n~~~~~-~~~iN~~cGa~~v~~~~~~p~~~~~~~~~~~~~A~DGDADRl 267 (513)
T cd03086 191 VVDCANGVGALKLKELLK-RLKKGLSVKII-NDGEEG-PELLNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRL 267 (513)
T ss_pred EEECCCCHHHHHHHHHHH-HHHCCCEEEEE-ECCCCC-CHHCCCCCCCCCHHCCCCCCHHHHHHCCCCEEEEECCCCCEE
T ss_conf 998997467788899998-75048618999-689998-000156568763110321105555411224466544887637
Q ss_pred EE--EC-CCCC--CCCHHHHHHHHHHHHHCCCCC--CC--CCEEEEECCCHH-HHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf 88--53-8872--274659999999998720204--78--716875310837-999984047615998286326654210
Q gi|254781107|r 283 MI--LG-KGIF--VNPSDSLAIMVANAGLIPGYA--TG--LVGVARSMPTSA-ALDRVAEKLNLKLFETPTGWKFFNNLL 352 (542)
Q Consensus 283 ~i--vd-~g~~--i~~~d~l~ll~~~~~~~~~~~--~~--~~~vv~t~~sS~-~i~~ia~~~g~~~~~t~vGfk~I~~~m 352 (542)
++ +| +|.+ ++|++++++++.|+....... .. ...||.|.+|+. ..+.+.+..|+++++|+||+||+.+.|
T Consensus 268 i~~~vde~G~~~lvDGD~il~llA~~~~~~~~~~~~~~~l~~gvV~T~~sN~~s~~~l~~~~gi~v~~t~vG~k~v~~~~ 347 (513)
T cd03086 268 VYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAA 347 (513)
T ss_pred EEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 89998799985213721999999999999986245666732227998522536799999843975899166079999999
Q ss_pred CCCCEEEECCCCCE--EC-CCCC------------------------------CCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 26973886211230--13-4742------------------------------157516789999999972468889999
Q gi|254781107|r 353 ENGMITICGEESFG--TG-SNHS------------------------------REKDGIWSILFWLNILAVRGESLLDIV 399 (542)
Q Consensus 353 ~~~~~~~ggEeS~G--~~-~~~~------------------------------~dkDgi~aal~~le~la~~gk~l~d~l 399 (542)
.+.++.++||+||+ .. ..++ +..||++++++++.+++..+++++|+.
T Consensus 348 ~~~digi~fE~nGhG~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ttGDgi~~~l~~~~~l~~~~~s~~~l~ 427 (513)
T cd03086 348 EEFDIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAVELILAALGWSPQDWD 427 (513)
T ss_pred HHCCCCEEEEECCCEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 85085256310377049955778778865202464200378999999874257773689999999999998199989998
Q ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf 88998829661211001368778999999999987753165211564201000000011346773746708999889919
Q gi|254781107|r 400 HKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSR 479 (542)
Q Consensus 400 ~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~w 479 (542)
. ++..|+.. ..+ ..++.+...+.....+ . -..|..+ ..++|+++..+++| |
T Consensus 428 ~-~~~~~Pq~-~~n---v~v~~k~~~~~~~~e~-~--~~~p~~l--------------------q~~Id~~~~~~~~g-r 478 (513)
T cd03086 428 N-LYTDLPNR-QLK---VKVPDRSVIKTTDAER-R--LVEPKGL--------------------QDKIDAIVAKYNNG-R 478 (513)
T ss_pred H-HCCCCCCE-EEE---EEECCCCCCCCCHHHH-H--HCCCHHH--------------------HHHHHHHHHHCCCE-E
T ss_conf 6-46425723-777---8716720001425666-5--3271879--------------------99999999614985-8
Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCHHHH
Q ss_conf 99975888878558999999528997899
Q gi|254781107|r 480 IIYRISGTDTENSTLRVYIDNYEPDSSKH 508 (542)
Q Consensus 480 iliRpSGTEPk~~~iRiy~E~~~~~~~~~ 508 (542)
++|||||||| +||||+|+.+++.++.
T Consensus 479 vlVRpSGTEP---lvRV~vEA~~~e~a~~ 504 (513)
T cd03086 479 AFVRPSGTED---VVRVYAEAATQEEADE 504 (513)
T ss_pred EEEECCCCCE---EEEEEEEECCHHHHHH
T ss_conf 9992379971---8799982299999999
No 23
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=1.6e-39 Score=274.67 Aligned_cols=264 Identities=17% Similarity=0.138 Sum_probs=147.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCC-----------CEEEEEEECC-CCC---------CCCCC--CCCCCCCCCC--H
Q ss_conf 84699850355440122111231058-----------5012332015-787---------54764--4685422210--4
Q gi|254781107|r 204 GFRIDIDCMNAVTGPYAKEILERKLG-----------APTGSVRNFI-PLE---------DFGGC--HPDPNLIHAK--D 258 (542)
Q Consensus 204 ~l~IvvD~~nGa~~~~~~~il~~~lg-----------~~~~~~~~~~-pd~---------~F~~~--~PnP~~~~~~--~ 258 (542)
+.+|++||+||+|+..+..+++ .+. ..+. +.|+. +++ +|... .|. ...+.. .
T Consensus 246 ~~~l~vDcANGVGa~k~~~l~~-~~~~~~~~~~~~~~~~i~-v~n~~~~~~~~LN~~CGAD~vk~~q~P~-~~~~~~~~~ 322 (604)
T PTZ00302 246 PQKIVVDAANGVGALAIKSLLE-AARQQSSFNALEEFFDVT-VLHDNVQDETALNHKCGADYTQKHRSPS-AAMKEWAAA 322 (604)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HHHHHCCCCCCCCCCEEE-EEECCCCCCCHHHHHCCCCCHHCCCCCC-CCCCCCCCC
T ss_conf 8638997876341788999999-876530111223334069-9837999845224530887101035686-322235444
Q ss_pred H----HHHHHCCCCCEEEEEECCCCCEEEEE--CC-----CCCCCCHHHHHHHHHHHHHC---CCCCCCCCEEEEECCCH
Q ss_conf 7----88861225860789864887456885--38-----87227465999999999872---02047871687531083
Q gi|254781107|r 259 L----YDRMMMHDSADFGAACDGDGDRSMIL--GK-----GIFVNPSDSLAIMVANAGLI---PGYATGLVGVARSMPTS 324 (542)
Q Consensus 259 l----~~~~~~~~~aDlgiA~DgDaDR~~iv--d~-----g~~i~~~d~l~ll~~~~~~~---~~~~~~~~~vv~t~~sS 324 (542)
. +.....+..++.+++|||||||++.. |+ +..++|+++..+++.++... .....-...||.|..++
T Consensus 323 ~~~~~~~~~~v~~~~~~~~SfDGDADRlVy~~~d~~gd~~~~LlDGDkIa~L~A~~l~~~l~~~~~~~l~iGVVqTaYAN 402 (604)
T PTZ00302 323 YGKQHCNPPGVNPEEVHYYSLDGDADRVVAFFHDPKGDDKWVLLDGDRISILYAMLLRKWLGEEALKALDVGVVQTAYAN 402 (604)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 45433464334544444555578876689998548887403650541999999999999987601223567789987566
Q ss_pred HHHHHHH-CCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCE-E--CCCCC-------------------------CCC
Q ss_conf 7999984-04761599828632665421026973886211230-1--34742-------------------------157
Q gi|254781107|r 325 AALDRVA-EKLNLKLFETPTGWKFFNNLLENGMITICGEESFG-T--GSNHS-------------------------REK 375 (542)
Q Consensus 325 ~~i~~ia-~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G-~--~~~~~-------------------------~dk 375 (542)
....+.. +..|+++..|+||-||+.+.+.+.+..+.||.+|+ + .+.+. .-.
T Consensus 403 gasT~yl~~~l~i~v~ct~TGVKhlh~~A~~~DiGvyFEaNGHGTVlfs~~~l~~~~~~~~~~~~~~L~~l~~LiNqtvG 482 (604)
T PTZ00302 403 GASTDYLQRQLGLRVYTSATGVKNLHPIAHARDIGIYFEANGHGTVLLNEDVIASKVSSLGPEKAALLAALPRLLSQVCG 482 (604)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEECCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 24599999834983487068856399998746845898565856899667776433204766688999999998635634
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEE-----EEECCCCCHHHH-------HHHHHHHHHHHHHCCCCCC
Q ss_conf 5167899999999724688899998899882966121-----100136877899-------9999999987753165211
Q gi|254781107|r 376 DGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYS-----RYDYLGIPTEKA-------QDFMNDFRYRLKNLIGSSF 443 (542)
Q Consensus 376 Dgi~aal~~le~la~~gk~l~d~l~el~~~yG~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~ 443 (542)
|||+..|++.-+|+.+|.++.|+.+ +|..++..... |..+...+.++. ++.++.......
T Consensus 483 DAisd~L~ve~iL~~~~~s~~~w~~-~YtdlP~rl~kV~V~dr~~i~tt~aEr~~~~P~gLQ~~Id~~V~~~~------- 554 (604)
T PTZ00302 483 DAIADLFACEVALLALNMTFQDWAD-LYTDLPSKQTKVTVANPRVITNTPDERRALTPPGLQEAIDAAVAAAA------- 554 (604)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH-HHHHCCCCEEEEEECCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHH-------
T ss_conf 8888789999999982999899999-85545765037883678703265566310486878999999999998-------
Q ss_pred CCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHH
Q ss_conf 564201000000011346773746708999889919999758888785589999995289978999
Q gi|254781107|r 444 IGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHL 509 (542)
Q Consensus 444 ~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l 509 (542)
....+.+|..|||||||| ++|||+|+.+...++.|
T Consensus 555 ----------------------------~~~~~~GR~FVRPSGTEd---vVRVYAEA~T~e~ad~L 589 (604)
T PTZ00302 555 ----------------------------LSSCEVARAFVRPSGTEP---VVRVYAEATDPAVCESL 589 (604)
T ss_pred ----------------------------HHCCCCEEEEECCCCCCC---EEEEEEECCCHHHHHHH
T ss_conf ----------------------------752787339975478875---78999703988999999
No 24
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=100.00 E-value=5.2e-35 Score=245.40 Aligned_cols=130 Identities=38% Similarity=0.512 Sum_probs=118.3
Q ss_pred CCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 888767420450544-4178999999999975465--4883899964767868999999999997898799967898065
Q gi|254781107|r 14 QKPGTSGLRKKVSVF-QQNSYTENFIQAIFNNVDC--AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILS 90 (542)
Q Consensus 14 l~FGT~GiRG~~~~~-~~~~~~~~~~~ai~~~~~~--~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~P 90 (542)
..|||+||||+++.. +++.++.++++++++.+.. .+++|+||||+|.+|++++++++.+|.++|++|+.+ |++|
T Consensus 2 ~~Fgt~GiRG~~~~~~lt~~~~~~i~~a~~~~l~~~~~~~~I~ig~D~R~ss~~~~~~~~~gl~~~G~~v~~~---g~~p 78 (138)
T pfam02878 2 QLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILL---GLLP 78 (138)
T ss_pred CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEC---CCCC
T ss_conf 7148999612648998899999999999999998648999799997996779999999999704419789635---8879
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 07999999850898179995765798988777358736878657867988999999740
Q gi|254781107|r 91 TPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 91 TP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
||+++|+++++++++||||||||||++|| |||+++++|.++.++.+++|++.+++.
T Consensus 79 TP~~~~~v~~~~~~~Gi~ITASHNP~~~n---GiK~~~~~G~~i~~~~~~~Ie~~~~~~ 134 (138)
T pfam02878 79 TPALSFATRKLNADGGIMITASHNPPDYN---GIKFYDSDGGPISPEVEEKIEAIIEKE 134 (138)
T ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCCCC---EEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 81999999961697499998278997535---699988998899889999999999764
No 25
>KOG2537 consensus
Probab=99.90 E-value=2.8e-21 Score=156.61 Aligned_cols=357 Identities=19% Similarity=0.196 Sum_probs=163.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECC
Q ss_conf 83899964767868999999999997898799967898065079999998508981799957657989887773587368
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~ 129 (542)
..|++|||+|.+|+.+.+.+..++.+....+ .+.|++.||.+.|+++..+-- +-|. +| -|.+ + |+=
T Consensus 125 ~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~---~d~GvvtTPqLHy~v~~~n~~-~~~~-~~-~~t~-~---~Y~---- 190 (539)
T KOG2537 125 AHVVVGRDTRPSSPRLLNAVRDGVGALFAQV---DDYGVVTTPQLHYMVRASNTK-GAYG-KG-KPTE-E---GYY---- 190 (539)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHEEE---CCEEEECCHHHHHHHHHCCCC-CCCC-CC-CCCC-C---CHH----
T ss_conf 1699803798752789988888888664285---326887512665666433555-6556-67-7883-2---077----
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCC-CCCCCEEE
Q ss_conf 78657867988999999740500013444687121031002575058984022267543320780322001-33784699
Q gi|254781107|r 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKL-LSFGFRID 208 (542)
Q Consensus 130 ~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~-~~~~l~Iv 208 (542)
..+.+..+++ . .++.. .....|+.
T Consensus 191 ----------~~ls~af~~l---------------------------------------~------~~~~~~~~~~~k~~ 215 (539)
T KOG2537 191 ----------SKLSKAFNEL---------------------------------------R------NITQESGDEVSKLI 215 (539)
T ss_pred ----------HHHHHHHHHH---------------------------------------H------HHCCCCCCCCCEEE
T ss_conf ----------8898878876---------------------------------------5------30124677662389
Q ss_pred EEECCCCCHHHHHHHHHHHCCCE--EEEEEECCCCC---------CCCCCCCCCCCCCCCHHHHHHHCCCCC-EEEEEEC
Q ss_conf 85035544012211123105850--12332015787---------547644685422210478886122586-0789864
Q gi|254781107|r 209 IDCMNAVTGPYAKEILERKLGAP--TGSVRNFIPLE---------DFGGCHPDPNLIHAKDLYDRMMMHDSA-DFGAACD 276 (542)
Q Consensus 209 vD~~nGa~~~~~~~il~~~lg~~--~~~~~~~~pd~---------~F~~~~PnP~~~~~~~l~~~~~~~~~a-DlgiA~D 276 (542)
+||.||.|..-+..+. . +..+ .+++.|..-|+ +|-..+--| |..+.- ..+ ...-.||
T Consensus 216 VD~ANGvG~~klk~l~-~-i~~~~l~vEivNd~~dpelLN~~CGADFVkt~Qkp--P~~~~~-------~~~~~~caSfD 284 (539)
T KOG2537 216 VDCANGVGAPKLKELL-G-IDSGLLNVEVVNDGIDPGLLNNGCGADFVKTKQKP--PKGLSP-------IKANTRCASFD 284 (539)
T ss_pred EECCCCCCHHHHHHHH-C-CCCCCCCEEEECCCCCHHHHCCCCCCCHHHCCCCC--CCCCCC-------CCCCCCEEEEE
T ss_conf 9885655628788885-1-58876746997189875454156563422104669--888898-------88887503440
Q ss_pred CCCCEEEE---ECCC--CCCCCHHHHHHHHHHHHHCCCCCC--CCCEEEEECCCHH-HHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 88745688---5388--722746599999999987202047--8716875310837-99998404761599828632665
Q gi|254781107|r 277 GDGDRSMI---LGKG--IFVNPSDSLAIMVANAGLIPGYAT--GLVGVARSMPTSA-ALDRVAEKLNLKLFETPTGWKFF 348 (542)
Q Consensus 277 gDaDR~~i---vd~g--~~i~~~d~l~ll~~~~~~~~~~~~--~~~~vv~t~~sS~-~i~~ia~~~g~~~~~t~vGfk~I 348 (542)
|||||+.. .++. .+++++.+..++..|+........ -...||-|.-+.. ..+.+-...+++++.+++|-|+.
T Consensus 285 GDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~tGvKhl 364 (539)
T KOG2537 285 GDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVPTGVKHL 364 (539)
T ss_pred CCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEECCCCCHH
T ss_conf 35651699993698406762450899999999999999851452000589886258507666653188657710254348
Q ss_pred HHHHCCCCEEEECCCCCE-E-CCC--------CCCCCCCH--HHHHHHHHHHHH-----CCCCHHHHHH--HHHHHHCCC
Q ss_conf 421026973886211230-1-347--------42157516--789999999972-----4688899998--899882966
Q gi|254781107|r 349 NNLLENGMITICGEESFG-T-GSN--------HSREKDGI--WSILFWLNILAV-----RGESLLDIVH--KHWATYGRN 409 (542)
Q Consensus 349 ~~~m~~~~~~~ggEeS~G-~-~~~--------~~~dkDgi--~aal~~le~la~-----~gk~l~d~l~--el~~~yG~~ 409 (542)
++...+-+...-||..+. . .+. +..+++.. ..++..|..++. .|-.+++.+. .+.+.+|
T Consensus 365 h~~A~efDiGiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~llv~~il~~~~-- 442 (539)
T KOG2537 365 HHAAAEFDIGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLAVEAILAHKG-- 442 (539)
T ss_pred HHHHHHHCCEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCC--
T ss_conf 888886161269850676212310777875455651787521499999999876532120133200599999998637--
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCCCC------CCCEEEEEECCCEEEEEE
Q ss_conf 12110013687789999999999877531652115642010000000113467737------467089998899199997
Q gi|254781107|r 410 YYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVS------DKQGIRVVFDNHSRIIYR 483 (542)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~------~~dGik~~~~d~~wiliR 483 (542)
| ..+.+ .+.+++.+ ......+|....-+.+.+.....+. ++|-+--.+.. +|-.+|
T Consensus 443 ~---------s~~~w-------~e~y~dlP-nrq~Kv~v~Dr~i~~ttdaer~~v~P~glQ~~Ida~vaky~~-gRaFvR 504 (539)
T KOG2537 443 W---------SVQDW-------DELYRDLP-NRQLKVKVPDRSIIKTTDAERQLVKPVGLQDKIDALVAKYKR-GRSFVR 504 (539)
T ss_pred C---------CHHHH-------HHHHCCCC-CCEEEEEECCCEEEECHHHHHHCCCCHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 7---------78788-------99835786-634777750220341205555327948899999998862358-851770
Q ss_pred CCCCCCCCCEEEEEEEECCCCHHHHH
Q ss_conf 58888785589999995289978999
Q gi|254781107|r 484 ISGTDTENSTLRVYIDNYEPDSSKHL 509 (542)
Q Consensus 484 pSGTEPk~~~iRiy~E~~~~~~~~~l 509 (542)
|||||- ++|+|+|+.+...++.|
T Consensus 505 ~SGTEd---vVRVYAEa~t~~~~d~l 527 (539)
T KOG2537 505 PSGTED---VVRVYAEASTKEDADQL 527 (539)
T ss_pred CCCCCC---EEEEEEECCCHHHHHHH
T ss_conf 267620---37888746854558999
No 26
>pfam02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III.
Probab=99.88 E-value=2.6e-22 Score=163.29 Aligned_cols=109 Identities=30% Similarity=0.369 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEEC-CCC
Q ss_conf 4659999999998720204787168753108379999840476159982863266542102697388621123013-474
Q gi|254781107|r 293 PSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-SNH 371 (542)
Q Consensus 293 ~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~-~~~ 371 (542)
|++++++++.|++..+ ++ .||.|++||.+++++++++|+++++|+||||||++.|.+.+++||||+|||+. ++|
T Consensus 2 gD~l~~l~a~~ll~~~---~~--~vv~tv~ts~~~~~~~~~~g~~~~~t~vG~~~v~~~m~~~~~~~ggE~SG~~~~~~~ 76 (111)
T pfam02880 2 GDQILALLARYLLELK---PG--AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKEKMREEGAVLGGEESGHIIFLDF 76 (111)
T ss_pred HHHHHHHHHHHHHHHC---CC--CEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCEEEEECC
T ss_conf 6899999999999878---99--599944275899999998799899957752899988643265044506744998417
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 21575167899999999724688899998899882
Q gi|254781107|r 372 SREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406 (542)
Q Consensus 372 ~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~y 406 (542)
.+++||+++++++|+++++++++|++++++++++|
T Consensus 77 ~~~~Dgi~a~l~~le~l~~~~~~ls~l~~~l~~~y 111 (111)
T pfam02880 77 ATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111 (111)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 87887899999999999982999999999854119
No 27
>pfam02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II.
Probab=99.86 E-value=1.8e-21 Score=157.83 Aligned_cols=103 Identities=30% Similarity=0.487 Sum_probs=91.2
Q ss_pred HHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 22675433207803220013378469985035544012211123105850123320157875476446854222104788
Q gi|254781107|r 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYD 261 (542)
Q Consensus 182 ~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~~l~~ 261 (542)
+.|++++.+.++.+.+++ ++|||++|||||+++.+++++| +.+|+.++. .|+.||++||++.|||+.++.+....
T Consensus 1 ~~Y~~~l~~~i~~~~i~~---~~lkv~vD~~~G~~~~~~~~ll-~~lg~~~~~-~~~~~d~~f~~~~p~P~~~~~l~~~~ 75 (103)
T pfam02879 1 DAYIDRLASAFDLEALKK---RGLKVVYDPLHGVGGEILPELL-KRLGAEVVE-ENCEPDGDFPTKAPNPEEPEALELLI 75 (103)
T ss_pred CHHHHHHHHHCCHHHHHC---CCCEEEEECCCCCHHHHHHHHH-HHCCCEEEE-ECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 978999998679999716---8988999778863589999999-986998999-43656998799293998454799999
Q ss_pred HHHCCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 8612258607898648874568853887
Q gi|254781107|r 262 RMMMHDSADFGAACDGDGDRSMILGKGI 289 (542)
Q Consensus 262 ~~~~~~~aDlgiA~DgDaDR~~ivd~g~ 289 (542)
+++++.++|+|+|+||||||++++|+.+
T Consensus 76 ~~v~~~~ad~g~a~DgDaDR~~~vd~~G 103 (103)
T pfam02879 76 ELVKEVGADLGIAFDGDADRLGVVDEKG 103 (103)
T ss_pred HHHHCCCCEEEEEECCCCCEEEEECCCC
T ss_conf 9874439769999878876179967999
No 28
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.12 E-value=6.4e-11 Score=89.60 Aligned_cols=44 Identities=30% Similarity=0.324 Sum_probs=35.4
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 08981799957657989887773587368786578679889999997
Q gi|254781107|r 101 YKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESK 147 (542)
Q Consensus 101 ~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~ 147 (542)
.++.-||||||||||+ +|||+|+++++|..+....+....+.++
T Consensus 71 ~g~~vGVMITASHNP~---~DNGVKlvdp~G~mL~~~wE~~at~laN 114 (604)
T PTZ00302 71 VGCSVGCMITASHNPY---TDNGLKLIDVDGGMLEVSWEKWCTRAAN 114 (604)
T ss_pred CCCEEEEEEECCCCCC---HHCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 7975999997278991---4388768779987413889999999847
No 29
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.00 E-value=4.5e-10 Score=84.08 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=54.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 838999647678689999999999978987999678980650799999985089817999576579
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNP 115 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP 115 (542)
..|+||||||+||+++..++..+|.+.|++|. +.|++|||.++|+|+..+.. |.++++||+.
T Consensus 103 ~~VvIGRDtR~Sg~~L~~av~~gl~s~g~~v~---d~G~~tTP~l~y~V~~~n~~-~~~~~~~~~~ 164 (513)
T cd03086 103 ANVFVGRDTRPSGPALLQALLDGLKALGGNVI---DYGLVTTPQLHYLVRAANTE-GAYGEPTEEG 164 (513)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEE---EECCCCCCHHHHHHHHHCCC-CCCCCCCHHH
T ss_conf 50686215776679999999988876297588---62322781487887761565-5556652567
No 30
>pfam00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain.
Probab=98.65 E-value=2.2e-08 Score=73.21 Aligned_cols=32 Identities=31% Similarity=0.770 Sum_probs=25.8
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECC
Q ss_conf 70899988991999975888878558999999528
Q gi|254781107|r 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYE 502 (542)
Q Consensus 468 dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~ 502 (542)
++.++.+.||.|+++||||||| +||+|+|+.+
T Consensus 24 ~~~~~~~~dG~~~~vR~SGTEp---~lRv~vE~~~ 55 (71)
T pfam00408 24 EALKILFEDGRRLVVRPSGTEP---VLRVYVEADD 55 (71)
T ss_pred HHHHHHCCCCCEEEEECCCCCC---EEEEEEEECC
T ss_conf 9999962897589984389984---6999996199
No 31
>KOG2537 consensus
Probab=97.19 E-value=0.00045 Score=45.29 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=27.4
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHH
Q ss_conf 0898179995765798988777358736878657867
Q gi|254781107|r 101 YKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137 (542)
Q Consensus 101 ~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~ 137 (542)
.+..-|+||||||||.++| |+|+.++.|..+...
T Consensus 57 ~gs~IGvMiTASHNp~~dN---GvKivd~~g~ml~~~ 90 (539)
T KOG2537 57 GGSTIGVMITASHNPVEDN---GVKIVDPSGEMLAAS 90 (539)
T ss_pred CCCEEEEEEEECCCCHHHC---CCCCCCCCCCHHHHH
T ss_conf 5981699998535843306---840457862233434
No 32
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.042 Score=32.57 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEE-EEECCCC-CCCCHHHHHHHH
Q ss_conf 8389996476786899999999999789879-9967898-065079999998
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFAR-IIIGKGG-ILSTPAVSHLIR 99 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V-~~~~~~g-i~PTP~~~~av~ 99 (542)
+++.++-|.-..-+-|.+++.+.+...|..- .+++.+| ...-|+..-+..
T Consensus 25 ~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~le 76 (524)
T COG0033 25 GSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALE 76 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHH
T ss_conf 7655676678899999999999886168777548788864015899999999
No 33
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=93.65 E-value=0.15 Score=29.01 Aligned_cols=28 Identities=32% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 8876742045054441789999999999
Q gi|254781107|r 15 KPGTSGLRKKVSVFQQNSYTENFIQAIF 42 (542)
Q Consensus 15 ~FGT~GiRG~~~~~~~~~~~~~~~~ai~ 42 (542)
.|||+||||.++...++..+..++.++.
T Consensus 1 ~Fg~~Gir~~~~~~~tP~~a~~~~~~~g 28 (355)
T cd03084 1 IFGTSGVRGVVGDDITPETAVALGQAIG 28 (355)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9687886688579988599999999978
No 34
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=90.92 E-value=1.1 Score=23.28 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHCCC----CEEEECCCCC-------------EECCCC--C---CCCC------
Q ss_conf 7999984047615998286326654210269----7388621123-------------013474--2---1575------
Q gi|254781107|r 325 AALDRVAEKLNLKLFETPTGWKFFNNLLENG----MITICGEESF-------------GTGSNH--S---REKD------ 376 (542)
Q Consensus 325 ~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~----~~~~ggEeS~-------------G~~~~~--~---~dkD------ 376 (542)
+.|+++|++|++-++ .+-+..+ +--|-||+|+ |++-.. + ||-|
T Consensus 218 q~l~~lCr~~DILLI---------VDDIQaGCGRTG~FFSFE~AgI~PDiVcLSKSisG~GLPlal~L~kPe~D~W~PGE 288 (413)
T TIGR02407 218 QRLEKLCRRHDILLI---------VDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALVLIKPELDVWKPGE 288 (413)
T ss_pred HHHHHHHHHCCCEEE---------EEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 999999986498687---------73174188887896453446775661785020035512689997354567467887
Q ss_pred ----------CHHHHHHHHH-HH---------HHCCCCHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHHHHHHH
Q ss_conf ----------1678999999-99---------7246888999988998829661211001368-7789999999999877
Q gi|254781107|r 377 ----------GIWSILFWLN-IL---------AVRGESLLDIVHKHWATYGRNYYSRYDYLGI-PTEKAQDFMNDFRYRL 435 (542)
Q Consensus 377 ----------gi~aal~~le-~l---------a~~gk~l~d~l~el~~~yG~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 435 (542)
|++||..+|+ .+ .++++.+.+.+++|.++|+.. . -..+.+-+|.-+.-.-
T Consensus 289 HNGTFRGNNlAFVtA~aAL~~yW~Dd~f~~~v~~~s~~~~~~l~~~~~~~~~~---------~~~~~RGRGlm~Gl~~~~ 359 (413)
T TIGR02407 289 HNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDEIVAEFPEL---------IEKSVRGRGLMQGLECGD 359 (413)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCCCCCCCCEEEECCCCC
T ss_conf 78864665278999999999848962689999999999999999999874552---------131104520142000477
Q ss_pred HHCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 531652115642010000000113467737467089998899199997588887855899999
Q gi|254781107|r 436 KNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYI 498 (542)
Q Consensus 436 ~~~~~~~~~~~~v~~~~d~~~~~~~~~~i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~ 498 (542)
.+. ..+| .+--|++| ++|--|| |.+-|||+..
T Consensus 360 ~~~------A~~i---------------------~~~aF~~G--LiiEtsG--p~DeV~K~lP 391 (413)
T TIGR02407 360 GDL------AGKI---------------------AKAAFENG--LIIETSG--PEDEVIKLLP 391 (413)
T ss_pred HHH------HHHH---------------------HHHHHHCC--CEEEEEC--CCCCEEEECC
T ss_conf 246------8999---------------------99986468--3898718--8984587038
No 35
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=87.46 E-value=2 Score=21.67 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCC---CCH--HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 99999999975465488389996476---786--8999999999997898799967898065079999998508981799
Q gi|254781107|r 34 TENFIQAIFNNVDCAEKTLVVGGDGR---FYN--HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGII 108 (542)
Q Consensus 34 ~~~~~~ai~~~~~~~~~~VvIG~D~R---~~S--~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GIm 108 (542)
....++++.++.+..+.||+|..-.. +.| ..++..+-......++.|.+=.|.| +++......-+.+.. -+|
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg--~~~~~~~~ai~~GFs-SvM 103 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG--ASFEDCKQAIRAGFS-SVM 103 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEE
T ss_conf 89999999999998589989994611887705288999999999997799889977789--999999999756882-587
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 95765798988777358736878657867988999999740
Q gi|254781107|r 109 LTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 109 ITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
|-+||-|.|+| -..+++..+.....
T Consensus 104 iDgS~~p~eEN----------------i~~tkevv~~ah~~ 128 (286)
T COG0191 104 IDGSHLPFEEN----------------IAITKEVVEFAHAY 128 (286)
T ss_pred ECCCCCCHHHH----------------HHHHHHHHHHHHHC
T ss_conf 53875778889----------------99999999999982
No 36
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=82.85 E-value=1.2 Score=23.09 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9998404761599828632665421026973886211230134742157516789999999972468889999889988
Q gi|254781107|r 327 LDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405 (542)
Q Consensus 327 i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~ 405 (542)
.++|++|.|-+..|+ |...+.+.+--+..|-+ |=++=.+ =+|+.+|.++.|++++|.++
T Consensus 142 ~~kI~kKvgEEA~E~------iiAa~~~~~~~~i~EaA-----------DLlYHll---VlL~~~gi~l~dV~~eL~~R 200 (201)
T PRK02759 142 TKRIAQKVGEEAVET------ALAAKNNDKEELINEAA-----------DLLYHLL---VLLQDQGLSLSDVIAVLKER 200 (201)
T ss_pred HHHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHH-----------HHHHHHH---HHHHHCCCCHHHHHHHHHHC
T ss_conf 899999987689999------99987298899999999-----------9999999---99998799999999999833
No 37
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=82.82 E-value=1 Score=23.61 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCHHH---HCCCCCCCEEEEEECCCCCH-HHHHHHHHH---HCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 2267543320780322---00133784699850355440-122111231---058501233201578754764468542
Q gi|254781107|r 182 ENYVALMENIFDFDAI---RKLLSFGFRIDIDCMNAVTG-PYAKEILER---KLGAPTGSVRNFIPLEDFGGCHPDPNL 253 (542)
Q Consensus 182 ~~Y~~~l~~~~d~~~i---~~~~~~~l~IvvD~~nGa~~-~~~~~il~~---~lg~~~~~~~~~~pd~~F~~~~PnP~~ 253 (542)
..|=..-+.-+|.+++ |+ .+-|.|.|||.|++|. .++.++. + +.|+.-..++ +||||+.
T Consensus 172 RTfE~~TR~TLD~saV~~~K~--~tHLPi~VDPSH~~GrRdLV~plA-~AA~A~GADgl~iE----------VHp~Pe~ 237 (262)
T TIGR01361 172 RTFEKSTRNTLDLSAVPLLKK--ETHLPIIVDPSHAAGRRDLVLPLA-KAAIAAGADGLMIE----------VHPDPEK 237 (262)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCCCEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEE----------ECCCHHH
T ss_conf 676300245333789999986--058987871879876245788999-99897574736898----------6678333
No 38
>KOG2451 consensus
Probab=78.80 E-value=3.3 Score=20.28 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCC--HHHHHHHHCCCCEEEEECCCCHHHHHHH
Q ss_conf 999999998720204787168753108--3799998404761599828632665421
Q gi|254781107|r 297 LAIMVANAGLIPGYATGLVGVARSMPT--SAALDRVAEKLNLKLFETPTGWKFFNNL 351 (542)
Q Consensus 297 l~ll~~~~~~~~~~~~~~~~vv~t~~s--S~~i~~ia~~~g~~~~~t~vGfk~I~~~ 351 (542)
-+|.++++-..-+.+.+...|+++-.+ +..-+.++..-.++-+ +-||.-.++..
T Consensus 201 saLala~lA~~AGiP~Gv~NVit~~~~~a~eig~~lctsp~Vrki-sFTGST~VGKi 256 (503)
T KOG2451 201 SALALAKLAEEAGIPAGVLNVITADASNAAEIGKELCTSPDVRKI-SFTGSTNVGKI 256 (503)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEE-EEECCCHHHHH
T ss_conf 899999999972999752488745778867877876158762258-76356518799
No 39
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=77.67 E-value=4.9 Score=19.21 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=59.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC---CCH-------HHHHHHHHHHHH-HCCCEE--EEECCCCCC
Q ss_conf 4505444178999999999975465488389996476---786-------899999999999-789879--996789806
Q gi|254781107|r 23 KKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGR---FYN-------HIVIQKIIKIAA-ANGFAR--IIIGKGGIL 89 (542)
Q Consensus 23 G~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R---~~S-------~~~a~~~a~~l~-~~Gi~V--~~~~~~gi~ 89 (542)
+.+.++.-+-+..-+.|||.++.+..+.||+|.-=-+ +.| ...+......|. ...++| -+=-|.| .
T Consensus 14 ~gYAvGaFN~NNlE~~qAIl~AAee~~SPVI~q~SeGA~KY~GkGd~~~G~~~~~~mV~~L~E~~~~tVPVaLHLDHG-~ 92 (339)
T TIGR01859 14 EGYAVGAFNINNLEWTQAILQAAEEERSPVIVQVSEGAIKYMGKGDATLGYKVAVAMVKTLIESMSITVPVALHLDHG-S 92 (339)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-C
T ss_conf 683114201216899999999998736875531202787404853177889999999999998679932068646887-6
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 50799999985089817999576579898877735873687865786798899999974
Q gi|254781107|r 90 STPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 90 PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
.=-.+.-|+ +-|.+ -|||=|||-|-|=| -..|+++.+.+..
T Consensus 93 s~E~c~~AI-~aGfs-SVMIDgShlP~EEN----------------~~~Tkkvve~Ah~ 133 (339)
T TIGR01859 93 SYESCIKAI-KAGFS-SVMIDGSHLPFEEN----------------VALTKKVVEIAHA 133 (339)
T ss_pred CHHHHHHHH-HCCCC-EEECCCCCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 489999999-64981-67202426878888----------------8888999999985
No 40
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=75.79 E-value=5.5 Score=18.88 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH-HHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCH
Q ss_conf 7678689999999999978987999678980650799-999985089817999576579898877735873687865786
Q gi|254781107|r 58 GRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV-SHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASE 136 (542)
Q Consensus 58 ~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~-~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~ 136 (542)
-|..+.++...+++-....|..|++++. +|.+ .-++.++...-|+.|.++||++. .+
T Consensus 89 eRV~G~DL~~~Ll~~a~~~g~~vfllG~-----~p~v~~~a~~~l~~~y~l~IvG~~~Gyf-----------------~~ 146 (246)
T PRK03692 89 SRVAGADLWEALMARAGKEGTPVFLVGG-----KPEVLAQTEAKLRAQWNVNIVGSQDGYF-----------------TP 146 (246)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECC-----CHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------CH
T ss_conf 7527199999999988874983798428-----8899999999999874986998469999-----------------83
Q ss_pred HHHHHHHHHHHH
Q ss_conf 798899999974
Q gi|254781107|r 137 QQTEDIFEESKK 148 (542)
Q Consensus 137 ~~~~~I~~~~~~ 148 (542)
+.+++|.+.+++
T Consensus 147 ~e~~~ii~~I~~ 158 (246)
T PRK03692 147 EQRQALFERIHA 158 (246)
T ss_pred HHHHHHHHHHHH
T ss_conf 777999999985
No 41
>TIGR01780 SSADH succinic semialdehyde dehydrogenase; InterPro: IPR010102 Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalysing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. In Escherichia coli, succinic semialdehyde dehydrogenase is located in a unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be co-transcribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH . Similar gene arrangements can be found in characterised Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16 from EC) share high sequence homology to characterised succinic semialdehyde dehydrogenases from rat and human (1.2.1.24 from EC), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 and G-242, C-293 and G-259 respectively of rat SSADH) . Eukaryotic SSADH enzymes exclusively utilise NAD+ as a cofactor, exhibiting little to no NADP+ activity . While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in Escherichia coli, Pseudomonas, and Klebsiella pneumoniae . The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation . SSADH enzyme belongs to the aldehyde dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase . Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family. ; GO: 0016620 oxidoreductase activity acting on the aldehyde or oxo group of donors NAD or NADP as acceptor.
Probab=73.65 E-value=4 Score=19.76 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEE------EEECCCC
Q ss_conf 786899999999999789879996789806507999999850898179------9957657
Q gi|254781107|r 60 FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGI------ILTASHN 114 (542)
Q Consensus 60 ~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GI------mITASHN 114 (542)
+=|-|+.+-++..|++ |+.+++-... -||..+++.-.|...+|| +||.|.|
T Consensus 130 FPaAMITRKagaALAA-GCT~i~KPA~---~TPlsALaLA~LA~~AG~P~GVlnVi~g~~~ 186 (454)
T TIGR01780 130 FPAAMITRKAGAALAA-GCTVIIKPAE---QTPLSALALARLAEEAGIPKGVLNVITGSAN 186 (454)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEECCCC---CCCHHHHHHHHHHHHCCCCCCCCEEECCCCC
T ss_conf 7236777334467630-6827863788---8847899999999857899984135617640
No 42
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=68.78 E-value=4 Score=19.75 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE--EEEECCCC
Q ss_conf 99999754654883899964767868999999999-9978987999678980650799999985089817--99957657
Q gi|254781107|r 38 IQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKI-AAANGFARIIIGKGGILSTPAVSHLIRKYKASGG--IILTASHN 114 (542)
Q Consensus 38 ~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~-l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~G--ImITASHN 114 (542)
+-.+.+.+...+++| |--=.=|+|+.|.. .=.+ |+|.|--|| .| .|.-++.|.. ..| .++=..||
T Consensus 214 Vv~~L~~LA~~G~ti-I~tIHQPSs~lF~l-Fd~i~lla~Grvvy----~G-~p~~a~~FF~-----~~Gpd~~cP~~yN 281 (671)
T TIGR00955 214 VVQVLKGLAQKGKTI-ICTIHQPSSELFEL-FDKIILLAEGRVVY----LG-SPDQAVPFFS-----ELGPDFPCPENYN 281 (671)
T ss_pred HHHHHHHHHCCCCEE-EEEEECCCHHHHHH-HCCEEEEECCEEEE----EC-CCHHHHHHHH-----HCCCCCCCCCCCC
T ss_conf 999999985089799-99830561889851-17167752772798----27-8103689898-----4488878978888
Q ss_pred CCCCC
Q ss_conf 98988
Q gi|254781107|r 115 PAGAT 119 (542)
Q Consensus 115 P~eyN 119 (542)
|+++-
T Consensus 282 PADF~ 286 (671)
T TIGR00955 282 PADFY 286 (671)
T ss_pred CHHHH
T ss_conf 88899
No 43
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.32 E-value=2.9 Score=20.64 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH---HCCCEEEEEECCCCCCCCCCCCCEEEECCCCC--CCCHHHHH
Q ss_conf 99999999978987999678980650799999985---08981799957657989887773587368786--57867988
Q gi|254781107|r 66 IQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRK---YKASGGIILTASHNPAGATQDFGIKYNTSSGG--SASEQQTE 140 (542)
Q Consensus 66 a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~---~~~~~GImITASHNP~eyN~dnGiK~~~~~G~--~~~~~~~~ 140 (542)
...+.+++.+.|..-+ -||++-++=.- .+-..=| |+- . =|-|.+.+|. .+.|+.|.
T Consensus 25 ~~~~~~v~~~yGf~eI--------~TPifE~telf~r~~Ge~td~-v~k-------e---mY~F~Dkggr~laLRpe~Ta 85 (429)
T COG0124 25 ESTIRKVFESYGFSEI--------RTPIFEYTELFARKSGEETDV-VEK-------E---MYTFKDKGGRSLALRPELTA 85 (429)
T ss_pred HHHHHHHHHHCCCEEC--------CCCCCCCHHHHHHCCCCCCCC-CCC-------C---EEEEEECCCCEEEECCCCCH
T ss_conf 9999999998099765--------575511166762016974333-321-------0---28999489988984466749
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254781107|r 141 DIFEESK 147 (542)
Q Consensus 141 ~I~~~~~ 147 (542)
.+.....
T Consensus 86 pv~R~~~ 92 (429)
T COG0124 86 PVARAVA 92 (429)
T ss_pred HHHHHHH
T ss_conf 9999999
No 44
>PRK09414 glutamate dehydrogenase; Provisional
Probab=67.54 E-value=8.4 Score=17.68 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=14.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 846998503554401221112310585012332
Q gi|254781107|r 204 GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 (542)
Q Consensus 204 ~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~ 236 (542)
+-++++....-+|.. +...|. .+|++++.+.
T Consensus 229 gk~v~IqGfGNVg~~-aA~~l~-e~GakvVavS 259 (446)
T PRK09414 229 GKTVVVSGSGNVAIY-AIEKAM-ELGAKVVTCS 259 (446)
T ss_pred CCEEEEECCCHHHHH-HHHHHH-HCCCEEEEEE
T ss_conf 887999777779999-999999-7699799998
No 45
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=67.34 E-value=8.5 Score=17.65 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=10.4
Q ss_pred CHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 83799998404761599828632
Q gi|254781107|r 323 TSAALDRVAEKLNLKLFETPTGW 345 (542)
Q Consensus 323 sS~~i~~ia~~~g~~~~~t~vGf 345 (542)
+....++..++.|.-.+...-|.
T Consensus 225 ~~~~a~~~~~~~g~v~~C~~C~~ 247 (375)
T pfam02005 225 GAAKVDKVIEKLGYVYHCSGCMN 247 (375)
T ss_pred CHHHHHHHHHHCCEEEECCCCCC
T ss_conf 88888778972874898899865
No 46
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=65.82 E-value=7.8 Score=17.87 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=62.8
Q ss_pred CCEE--EEEEECCCCCCCCCCC--CCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEE-ECCCCCCCCHHHHHHHHHH
Q ss_conf 8501--2332015787547644--685422210478886122586078986488745688-5388722746599999999
Q gi|254781107|r 229 GAPT--GSVRNFIPLEDFGGCH--PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMI-LGKGIFVNPSDSLAIMVAN 303 (542)
Q Consensus 229 g~~~--~~~~~~~pd~~F~~~~--PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~i-vd~g~~i~~~d~l~ll~~~ 303 (542)
|+.+ .++.||.|-.-+...- |+| |+.+.++-.+|-| .|+||.|++. .++-|-+-|=|+.+-.+..
T Consensus 230 G~~v~DLEF~QFHPT~L~~~~~GG~~~-------LitEAvRGEGA~L---vd~~G~Rf~~~~hp~GeLAPRDiVaRAI~~ 299 (546)
T TIGR00551 230 GVEVRDLEFVQFHPTALVKPRVGGRYF-------LITEAVRGEGAIL---VDRDGKRFMADVHPRGELAPRDIVARAIDE 299 (546)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCC-------CCCCEEECCCCEE---ECCCCCEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 872204634256721113788789876-------4001100387423---558886702677888876740488999999
Q ss_pred HHHCCCCC-CC-CCEEEEECCCH-----H--HHHHHHCCCCEEEEECCCC
Q ss_conf 98720204-78-71687531083-----7--9999840476159982863
Q gi|254781107|r 304 AGLIPGYA-TG-LVGVARSMPTS-----A--ALDRVAEKLNLKLFETPTG 344 (542)
Q Consensus 304 ~~~~~~~~-~~-~~~vv~t~~sS-----~--~i~~ia~~~g~~~~~t~vG 344 (542)
-++..+.+ .. .+++--+-... + .|-+.|++.|+...+-|+=
T Consensus 300 ~m~~~~~dPtqacVfLD~s~Ie~~~f~~RFP~I~~~c~~~GID~~~~~IP 349 (546)
T TIGR00551 300 EMKKGGKDPTQACVFLDASGIEDDFFKSRFPTITAKCRGAGIDIVREPIP 349 (546)
T ss_pred HHHHCCCCCCEEEEEEECCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 99722879340688874358883465212727899998578875558715
No 47
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=65.55 E-value=7.4 Score=18.02 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCEEEEEECC---CCCEEEEECCCCCCCCHHHHHHHHHHH--HHCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECC
Q ss_conf 8607898648---874568853887227465999999999--87202047871687531083799998404761599828
Q gi|254781107|r 268 SADFGAACDG---DGDRSMILGKGIFVNPSDSLAIMVANA--GLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETP 342 (542)
Q Consensus 268 ~aDlgiA~Dg---DaDR~~ivd~g~~i~~~d~l~ll~~~~--~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~ 342 (542)
+.|+|.-.|| |+=+-..+++.. .+++. ..... ..++..+.+.. .---+..++++++++|+.+++-.
T Consensus 78 kiD~G~~idG~~~D~A~Tv~v~~~~----~~Li~-aa~~al~~ai~~~kpG~~----~~dIg~~Ie~~~~~~g~~~v~~l 148 (291)
T cd01088 78 KLDFGAHVDGYIADSAFTVDFDPKY----DDLLE-AAKEALNAAIKEAGPDVR----LGEIGEAIEEVIESYGFKPIRNL 148 (291)
T ss_pred EEEEEEEECCEEEEEEEEEECCCCH----HHHHH-HHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHCCCEEECCC
T ss_conf 9866578778886888999638317----78999-999999999998538989----89999999999998697700365
Q ss_pred CCHHHHHH-HHCCCC----------------EEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 63266542-102697----------------3886211230134742157516789999999972468889999889988
Q gi|254781107|r 343 TGWKFFNN-LLENGM----------------ITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405 (542)
Q Consensus 343 vGfk~I~~-~m~~~~----------------~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~ 405 (542)
+||. |++ .+..+. -+|+-|.-.-.+.+.+++ |.-.+.-.+..--..+.+.--.+++++.++
T Consensus 149 ~GH~-i~ry~ih~~~~Ipn~~~~~~~~l~~g~v~aIEp~~t~G~g~v~~-~~~~~iy~~~~~~~lk~~~~r~~l~~I~~~ 226 (291)
T cd01088 149 TGHS-IERYRLHAGKSIPNVKGGEGTRLEEGDVYAIEPFATTGKGYVHD-GPECSIYMLNRDKPLRLPRARKLLDVIYEN 226 (291)
T ss_pred CCCC-CCCCCCCCCCEECEECCCCCCEECCCCEEEEEEEEECCCCEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 2557-77722169975342528998366068689985574058752633-896158886255543207789999999862
Q ss_pred HCCCEEEE
Q ss_conf 29661211
Q gi|254781107|r 406 YGRNYYSR 413 (542)
Q Consensus 406 yG~~~~~~ 413 (542)
||...+..
T Consensus 227 f~tlPFs~ 234 (291)
T cd01088 227 FGTLPFAR 234 (291)
T ss_pred CCCCEEEH
T ss_conf 49713100
No 48
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=62.43 E-value=10 Score=17.06 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCCEEEE--EECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7846998--503554401221112310585012332015787547644685422210478886122586078986488
Q gi|254781107|r 203 FGFRIDI--DCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGD 278 (542)
Q Consensus 203 ~~l~Ivv--D~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgD 278 (542)
.+++|++ |+.|.++..++ ..+ ..+|..+. -+.|.+ ..|++ ...+.+.+.+.+.+..+-+-.|+|
T Consensus 154 ~gl~i~~vGD~~nnVa~S~~-~~~-~~lG~~v~---~~~P~~----~~p~~---~~~~~~~~~~~~~g~~i~~~~d~~ 219 (331)
T PRK02102 154 KGLKLAYLGDGRNNMANSLL-VGG-AKLGMDVR---ICAPKS----LWPEE---ELVAQAKEIAKETGAKITITEDVE 219 (331)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHH-HHCCCEEE---EECCCC----CCCCH---HHHHHHHHHHHHHCCEEEEEECHH
T ss_conf 67738997887642466899-999-85598599---975864----48897---999999999998299389995666
No 49
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=61.14 E-value=11 Score=16.92 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=17.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 7846998503554401221112310585
Q gi|254781107|r 203 FGFRIDIDCMNAVTGPYAKEILERKLGA 230 (542)
Q Consensus 203 ~~l~IvvD~~nGa~~~~~~~il~~~lg~ 230 (542)
.|..||+-+.|-. ..=+.+||++.||.
T Consensus 133 ~P~H~VvPAlHk~-~~qig~il~Erl~~ 159 (450)
T TIGR00273 133 PPSHIVVPALHKN-RKQIGEILKERLGY 159 (450)
T ss_pred CCEEEEECCCCCC-HHHHHHHHHHHCCC
T ss_conf 8427885572278-68988899874589
No 50
>PRK08185 hypothetical protein; Provisional
Probab=59.71 E-value=12 Score=16.76 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH-HHHHHHHHCCCEEEEEEC
Q ss_conf 999999975465488389996476---7868999999999997898799967898065079-999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDGR---FYNHIVIQKIIKIAAANGFARIIIGKGGILSTPA-VSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~R---~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~-~~~av~~~~~~~GImITA 111 (542)
.-+.++.++.+..+.||+|..-.. +.+.++...+........+.|.+--|. +.+.. +..++ ..+.+ .||+-+
T Consensus 24 e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~a~~~~VpV~lHLDH--~~~~e~~~~ai-~~GFs-SVM~Dg 99 (283)
T PRK08185 24 CFLRAVVEEAEANNAPAIIAIHPNELDFVGDDFFAYVRERAQRSPVPFVIHLDH--GASVEDVMRAI-RCGFT-SVMIDG 99 (283)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CCCHHHHHHHH-HCCCC-EEEEEC
T ss_conf 999999999999787989993812887711999999999998779989998999--99999999999-82998-798638
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 65798988777358736878657867988999999740
Q gi|254781107|r 112 SHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 112 SHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
||=|-+-| -..++++.+.+...
T Consensus 100 S~lp~eeN----------------i~~Tk~vv~~ah~~ 121 (283)
T PRK08185 100 SLLPYEEN----------------VALTKEVVELAHKV 121 (283)
T ss_pred CCCCHHHH----------------HHHHHHHHHHHHHC
T ss_conf 98999999----------------99999999999865
No 51
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=59.37 E-value=12 Score=16.72 Aligned_cols=77 Identities=13% Similarity=0.280 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999754654883899964---7678689999999999978--9879996789806507999999850898179995
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGD---GRFYNHIVIQKIIKIAAAN--GFARIIIGKGGILSTPAVSHLIRKYKASGGIILT 110 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D---~R~~S~~~a~~~a~~l~~~--Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImIT 110 (542)
..++++.++.+..+.||+|..- .++.+..+....+..+... ++.|.+--|.| ++..........+.+ .|||-
T Consensus 29 e~~~Avi~AAee~~sPvIlq~s~g~~~~~g~~~l~~~~~~a~~~~~~VPValHLDHg--~~~e~i~~ai~~GFt-SVMiD 105 (347)
T PRK09196 29 EQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHG--NSPATCQRAIQLGFT-SVMMD 105 (347)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEE
T ss_conf 999999999999689989998731776658799999999999856899889974788--999999999864898-38973
Q ss_pred CCCCC
Q ss_conf 76579
Q gi|254781107|r 111 ASHNP 115 (542)
Q Consensus 111 ASHNP 115 (542)
+||-|
T Consensus 106 gS~lp 110 (347)
T PRK09196 106 GSLKA 110 (347)
T ss_pred CCCCC
T ss_conf 65565
No 52
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=58.81 E-value=8.1 Score=17.77 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=17.9
Q ss_pred CCEEEE----ECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 838999----6476786899999999999789879996
Q gi|254781107|r 50 KTLVVG----GDGRFYNHIVIQKIIKIAAANGFARIII 83 (542)
Q Consensus 50 ~~VvIG----~D~R~~S~~~a~~~a~~l~~~Gi~V~~~ 83 (542)
...-++ +|.+..++....-. -.-.|.+|.|.
T Consensus 25 ~~~~~~~~P~cD~~s~~g~~tqr~---CvfdGA~vvL~ 59 (470)
T TIGR01283 25 QKSGCSDIPDCDKNSLSGGATQRG---CVFDGARVVLL 59 (470)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---EECCCCEEEEE
T ss_conf 306776777666788787645651---10147556610
No 53
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=55.88 E-value=13 Score=16.40 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=41.4
Q ss_pred CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH----HHHHHCCCEEEEECCCCC
Q ss_conf 8888767420450544417899999999997546548838999647678689999999----999978987999678980
Q gi|254781107|r 13 DQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKII----KIAAANGFARIIIGKGGI 88 (542)
Q Consensus 13 ~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a----~~l~~~Gi~V~~~~~~gi 88 (542)
.+.|||+.-|.-+-...+...+.....-+...... .... +.+|..+-++++ .++...|++..-+-..|+
T Consensus 7 GvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~--~~~~-----~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGv 79 (544)
T COG1069 7 GVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPG--SNLA-----EQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGV 79 (544)
T ss_pred EEEECCCCEEEEEEECCCCCCHHHCCCCEECCCCC--CCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 88714885268999778880555314410235677--5543-----3598999999999999999981998678268787
Q ss_pred CCCHHHHHHHHHHC
Q ss_conf 65079999998508
Q gi|254781107|r 89 LSTPAVSHLIRKYK 102 (542)
Q Consensus 89 ~PTP~~~~av~~~~ 102 (542)
-.| ++.+++..+
T Consensus 80 DaT--cSlvv~d~~ 91 (544)
T COG1069 80 DAT--CSLVVIDRD 91 (544)
T ss_pred CCE--EEEEEECCC
T ss_conf 543--236888799
No 54
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=54.99 E-value=14 Score=16.26 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CC-----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH
Q ss_conf 99999997546548838999647---67-----------------86899999999999789879996789806507999
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RF-----------------YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVS 95 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~-----------------~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~ 95 (542)
..++++.++.+..+.||+|..=. ++ ....++..+.......++.|.+--|. ++.+.+.
T Consensus 24 E~~~AvleAAee~~SPVIlq~s~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~~v~~~A~~~~VPVaLHlDH--~~~~~l~ 101 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDH--CAKKLLP 101 (340)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCHH
T ss_conf 99999999999969998998876689885450033212445555428999999999998669988997677--8875558
Q ss_pred HHHHHHCC------------CEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99985089------------8179995765798988777358736878657867988999999740
Q gi|254781107|r 96 HLIRKYKA------------SGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 96 ~av~~~~~------------~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
+..+...+ --.+|+-+||=|.|+| -..++++.+.+...
T Consensus 102 ~i~~~i~aG~~~~~~~~~~~FsSvMiDgS~~p~eEN----------------i~~Tkevve~Ah~~ 151 (340)
T cd00453 102 WIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQEN----------------IEICSKYLERMSKI 151 (340)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH----------------HHHHHHHHHHHHHC
T ss_conf 899999971888864478898458753898999999----------------99999999999984
No 55
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=53.89 E-value=14 Score=16.14 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=13.5
Q ss_pred CCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 89919999758888785589999
Q gi|254781107|r 475 DNHSRIIYRISGTDTENSTLRVY 497 (542)
Q Consensus 475 ~d~~wiliRpSGTEPk~~~iRiy 497 (542)
+.| +++|++|+.++ +||+.
T Consensus 404 ~~G--ll~~~~g~~g~--~lrl~ 422 (446)
T PRK06058 404 AAG--VIVLTCGTYGN--VIRLL 422 (446)
T ss_pred HCC--CEEECCCCCCC--EEEEE
T ss_conf 789--88962588999--89997
No 56
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family; InterPro: IPR010158 Enzymes in this subfamily hydrolyse the amide bonds of compounds containing carbamoyl groups or hydantoin rings . These enzymes are members of the broader family of amidases.; GO: 0016813 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amidines, 0008152 metabolic process.
Probab=53.71 E-value=4.3 Score=19.54 Aligned_cols=51 Identities=24% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH--HCCCEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 999999999978987999678980650799999985--08981799957657989887773587
Q gi|254781107|r 65 VIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRK--YKASGGIILTASHNPAGATQDFGIKY 126 (542)
Q Consensus 65 ~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~--~~~~~GImITASHNP~eyN~dnGiK~ 126 (542)
....+.+-.++.|+.|.. +..| -=|+ |+ ...+.-++..+||==.-|| |=||
T Consensus 33 ~~~~~~~~mr~~Gl~v~~-D~~G------NL~g-r~~G~~p~~~~vl~GSHlDtv~n---GG~f 85 (406)
T TIGR01879 33 AKDLVKKRMRAAGLEVEI-DEVG------NLIG-RKEGTEPDLEVVLVGSHLDTVVN---GGKF 85 (406)
T ss_pred HHHHHHHHHHHCCCEEEE-CCCC------CCEE-CCCCCCCCCCEEEEECCHHCCCC---CCCC
T ss_conf 999999999865981765-2522------3021-06787888772788222102379---8720
No 57
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=53.06 E-value=9.2 Score=17.41 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCEEEEECC--CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 838999647--6786899999999999789879996789806507999999
Q gi|254781107|r 50 KTLVVGGDG--RFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLI 98 (542)
Q Consensus 50 ~~VvIG~D~--R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av 98 (542)
+.|+|-|-. =--...|.+ +.+.|. |+.++-+ .|+-|-|.++-..
T Consensus 30 ~kVLi~YGGGSIKrnGvydq-V~~~Lk--g~~~~E~--~GVEPNP~~~Tv~ 75 (384)
T COG1979 30 AKVLIVYGGGSIKKNGVYDQ-VVEALK--GIEVIEF--GGVEPNPRLETLM 75 (384)
T ss_pred CEEEEEECCCCCCCCCHHHH-HHHHHC--CCEEEEE--CCCCCCCHHHHHH
T ss_conf 72999956862000251999-999854--8669994--4877895489999
No 58
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=52.13 E-value=15 Score=15.97 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=10.7
Q ss_pred EEEECCCHHHHHHHHCCCC
Q ss_conf 8753108379999840476
Q gi|254781107|r 317 VARSMPTSAALDRVAEKLN 335 (542)
Q Consensus 317 vv~t~~sS~~i~~ia~~~g 335 (542)
|-..++++....++++.+|
T Consensus 81 IRAAl~~d~~~A~~aR~HN 99 (171)
T PRK08622 81 IRSALVRDMTSALYAKEEL 99 (171)
T ss_pred EEEEEECCHHHHHHHHHHC
T ss_conf 4899858989999999965
No 59
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=50.60 E-value=16 Score=15.81 Aligned_cols=17 Identities=0% Similarity=0.022 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 46599999999987202
Q gi|254781107|r 293 PSDSLAIMVANAGLIPG 309 (542)
Q Consensus 293 ~~d~l~ll~~~~~~~~~ 309 (542)
+.+.++.++..+.+.++
T Consensus 192 g~remgwm~d~Y~~i~~ 208 (469)
T PTZ00079 192 GGREIGYLYGQYKRLRN 208 (469)
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 89999999999985058
No 60
>PRK10834 hypothetical protein; Provisional
Probab=49.55 E-value=17 Score=15.71 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCCCCCCCC--EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE--EEEECCCCCC
Q ss_conf 888767420--450544417899999999997546548838999647678689999999999978987--9996789806
Q gi|254781107|r 14 QKPGTSGLR--KKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFA--RIIIGKGGIL 89 (542)
Q Consensus 14 l~FGT~GiR--G~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~--V~~~~~~gi~ 89 (542)
|-+||+.+. |..+ .-+..++-.|+.-+..++-+.++|..|.+..+..=...--.-|.+.|+. .++.+..|+-
T Consensus 49 lVLGtak~~~~G~pn----~~~~~RldaA~~LY~~GKv~~iLvSGDn~~~~YnEp~~Mk~~Li~~GVP~e~I~~D~AGfr 124 (239)
T PRK10834 49 VVLGTAKYYRTGVIN----QYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPADIVLDYAGFR 124 (239)
T ss_pred EEECCCCCCCCCCCC----HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHEECCCCCCC
T ss_conf 994576467899819----8999999999999986997489866899988898289999999985998999505667654
Q ss_pred CCHHHHHHHHHHCCCEEEEEEC-CCCC
Q ss_conf 5079999998508981799957-6579
Q gi|254781107|r 90 STPAVSHLIRKYKASGGIILTA-SHNP 115 (542)
Q Consensus 90 PTP~~~~av~~~~~~~GImITA-SHNP 115 (542)
+--.+..|-.-++.+--++||- -|||
T Consensus 125 T~DS~vRAk~VF~~~~~iIVTQ~FH~~ 151 (239)
T PRK10834 125 TLDSIVRTRKVFDTNDFIIITQRFHCE 151 (239)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 899999999980998289994601389
No 61
>PRK05568 flavodoxin; Provisional
Probab=49.55 E-value=17 Score=15.71 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=29.1
Q ss_pred CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8389996476786-8999999999997898799967
Q gi|254781107|r 50 KTLVVGGDGRFYN-HIVIQKIIKIAAANGFARIIIG 84 (542)
Q Consensus 50 ~~VvIG~D~R~~S-~~~a~~~a~~l~~~Gi~V~~~~ 84 (542)
+.|+|-|++...+ +..|+++++++.+.|++|.++.
T Consensus 2 ~kv~IvY~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~ 37 (142)
T PRK05568 2 KKLNIIYWSGTGNTEAMANLIAEGAKENGLEVKLLN 37 (142)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 729999989985499999999999986698399998
No 62
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.28 E-value=18 Score=15.58 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=37.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 996476786899999999999789879996789806507999999850898179995765
Q gi|254781107|r 54 VGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASH 113 (542)
Q Consensus 54 IG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASH 113 (542)
++-|..-.+ .+.++..|..+|++|++.+.+ +|...+--++++.+.+ -|.+|++-
T Consensus 7 v~gD~H~iG---~~iv~~~l~~~G~~V~~lG~~--vp~e~~v~~a~~~~~d-~I~lS~~~ 60 (119)
T cd02067 7 VGGDGHDIG---KNIVARALRDAGFEVIDLGVD--VPPEEIVEAAKEEDAD-AIGLSGLL 60 (119)
T ss_pred CCCCHHHHH---HHHHHHHHHHCCCEEEECCCC--CCHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 398567789---999999999789989989999--9999999999970999-99996220
No 63
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=47.80 E-value=18 Score=15.53 Aligned_cols=77 Identities=12% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999754654883899964---7678689999999999978--9879996789806507999999850898179995
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGD---GRFYNHIVIQKIIKIAAAN--GFARIIIGKGGILSTPAVSHLIRKYKASGGIILT 110 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D---~R~~S~~~a~~~a~~l~~~--Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImIT 110 (542)
..++++.++.+..+.||+|..- ..+.+..+....+..++.. ++.|.+--|.| .+..........+.. .|||-
T Consensus 29 e~~~Avl~AAee~~sPvIiq~s~g~~~~~g~~~l~~~v~~~a~~~~~VPValHLDHg--~~~e~~~~ai~~GFt-SVMiD 105 (347)
T PRK13399 29 EQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHG--NSPATCQSAIRSGFT-SVMMD 105 (347)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEC
T ss_conf 999999999999787989984813887759899999999999867899689855888--999999999871997-47634
Q ss_pred CCCCC
Q ss_conf 76579
Q gi|254781107|r 111 ASHNP 115 (542)
Q Consensus 111 ASHNP 115 (542)
+||-|
T Consensus 106 gS~lP 110 (347)
T PRK13399 106 GSLLA 110 (347)
T ss_pred CCCCC
T ss_conf 65565
No 64
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=47.42 E-value=18 Score=15.50 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=48.8
Q ss_pred EEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 35207876788887674204505444178999999999975465488389996476786899999999999789879996
Q gi|254781107|r 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIII 83 (542)
Q Consensus 4 ~~~~~~~~~~l~FGT~GiRG~~~~~~~~~~~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~ 83 (542)
.|+-|-+..-+.+-..|++..++..-+ .++...+..+.+. ...|++.+|.=.-+...+.-+...+...|+++.+.
T Consensus 3 viivEG~~D~i~~~~~G~~n~VA~~Gt-~~t~~q~~~L~~~----~~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~i~ 77 (79)
T cd03364 3 VILVEGYMDVIALHQAGIKNVVASLGT-ALTEEQAELLKRL----AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred EEEEECHHHHHHHHHCCCCCEEECCCC-CCCHHHHHHHHCC----CCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999967799999998599625625665-4719999977231----58679997898899999999999999779969999
No 65
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=47.12 E-value=18 Score=15.47 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCCEEEEECCCCCHHHH-HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 88389996476786899-99999999978987999678980650799999985089817999576579
Q gi|254781107|r 49 EKTLVVGGDGRFYNHIV-IQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNP 115 (542)
Q Consensus 49 ~~~VvIG~D~R~~S~~~-a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP 115 (542)
.++|++|.=--- -+.+ .+.++..|.++|.+|+.++.+ +|.+.+--+++..+.+. |.+|+|=.+
T Consensus 82 ~g~vv~~tv~Gd-~H~lG~~mv~~~l~~~G~~V~~LG~~--vp~e~~v~~~~~~~~di-vglS~~~~~ 145 (201)
T cd02070 82 KGKVVIGTVEGD-IHDIGKNLVATMLEANGFEVIDLGRD--VPPEEFVEAVKEHKPDI-LGLSALMTT 145 (201)
T ss_pred CCEEEEECCCCC-HHHHHHHHHHHHHHHCCCEEEECCCC--CCHHHHHHHHHHHCCCE-EEEECCCCC
T ss_conf 865999627987-73899999999998789779977899--99799999999729899-999625668
No 66
>PRK05569 flavodoxin; Provisional
Probab=46.61 E-value=19 Score=15.42 Aligned_cols=35 Identities=17% Similarity=-0.048 Sum_probs=29.0
Q ss_pred CCEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8389996476786-8999999999997898799967
Q gi|254781107|r 50 KTLVVGGDGRFYN-HIVIQKIIKIAAANGFARIIIG 84 (542)
Q Consensus 50 ~~VvIG~D~R~~S-~~~a~~~a~~l~~~Gi~V~~~~ 84 (542)
++|+|-||+-+.+ +..|+++++++.+.|++|.+..
T Consensus 2 ~Kv~IvY~S~~GnTe~mA~~IaeG~~~~G~ev~v~~ 37 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKH 37 (141)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 749999989960899999999999997698199998
No 67
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=45.74 E-value=19 Score=15.33 Aligned_cols=42 Identities=7% Similarity=-0.063 Sum_probs=33.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf 899964767868999999999997898799967898065079
Q gi|254781107|r 52 LVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPA 93 (542)
Q Consensus 52 VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~ 93 (542)
.+.|+=.+...+++..++..+|...|+++..+++-+.|..|.
T Consensus 4 ~f~GC~~~~~~p~~~~at~~vl~~lGiev~~~~~~~CCGa~~ 45 (290)
T TIGR03288 4 FFLGCIMPNRYPGIEKATRLTMEKLGIELLDMPGASCCPAPG 45 (290)
T ss_pred EECCHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 956300264271699999999998799789789998466545
No 68
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.45 E-value=20 Score=15.30 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=26.7
Q ss_pred CCCCEEE---EECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
Q ss_conf 4883899---9647678689999999999978987999678980650799
Q gi|254781107|r 48 AEKTLVV---GGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV 94 (542)
Q Consensus 48 ~~~~VvI---G~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~ 94 (542)
.+++|+| |-|..--+ ++.++..|.+.|++|+. .|...||.=
T Consensus 11 ~rprvlvak~GlDgHd~g---akvia~~l~d~GfeVi~---~g~~~tp~e 54 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRG---AKVIARALADAGFEVIN---LGLFQTPEE 54 (143)
T ss_pred CCCEEEEECCCCCCCCCC---HHHHHHHHHHCCCEEEE---CCCCCCHHH
T ss_conf 986699953676544313---19999999857937981---587589999
No 69
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=44.99 E-value=20 Score=15.26 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=13.3
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 889919999758888785589999
Q gi|254781107|r 474 FDNHSRIIYRISGTDTENSTLRVY 497 (542)
Q Consensus 474 ~~d~~wiliRpSGTEPk~~~iRiy 497 (542)
++.| +++|++|+.++ +||+.
T Consensus 385 ~~~G--ll~~~~g~~~n--~i~~~ 404 (429)
T PRK08117 385 LENG--LLLYGCGNDGN--VLRFI 404 (429)
T ss_pred HHCC--CEEEECCCCCC--EEEEE
T ss_conf 9699--58984479999--89997
No 70
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=44.21 E-value=20 Score=15.18 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=11.5
Q ss_pred EEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 9999758888785589999995289
Q gi|254781107|r 479 RIIYRISGTDTENSTLRVYIDNYEP 503 (542)
Q Consensus 479 wiliRpSGTEPk~~~iRiy~E~~~~ 503 (542)
-+-+..=|. | ..|+-+.+.+.
T Consensus 210 ~ikI~yiga-P---~Yri~v~a~D~ 230 (262)
T PRK03987 210 EVKIYYVGA-P---RYRIDVIAPDY 230 (262)
T ss_pred CEEEEEECC-C---CEEEEEEECCH
T ss_conf 479999669-8---17999983899
No 71
>KOG1322 consensus
Probab=43.71 E-value=21 Score=15.13 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 9999999999978987999678980650799999985089817999576579
Q gi|254781107|r 64 IVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNP 115 (542)
Q Consensus 64 ~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP 115 (542)
.+...-.+.+...|++-++.- -..-|+-......+.++.-.||-|||||--
T Consensus 41 pmI~hqieal~nsGi~~I~la-~~y~s~sl~~~~~k~y~~~lgVei~~s~et 91 (371)
T KOG1322 41 PMILHQIEALINSGITKIVLA-TQYNSESLNRHLSKAYGKELGVEILASTET 91 (371)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-EECCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 052778999875797479999-713828999999997612455599998206
No 72
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=43.49 E-value=18 Score=15.48 Aligned_cols=69 Identities=9% Similarity=0.015 Sum_probs=31.6
Q ss_pred CCCCCCHHHCCHHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEE
Q ss_conf 44468712103100257505898402226754332078032200133784699850355440122111231058501
Q gi|254781107|r 156 EANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT 232 (542)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~ 232 (542)
++.-.||.. ....+..+...|++..|+....+.+. +......+.|.=-|++||.+-+...+.. ....++
T Consensus 105 DVYLiDWGy---P~~~D~~ltLdDY~~~YI~~cV~~i~----~~~~~d~i~lLG~CqGGTfsL~yAaL~~-~kPiKN 173 (367)
T TIGR01836 105 DVYLIDWGY---PDRADRYLTLDDYVNGYIDKCVDYIC----RTSKLDQISLLGICQGGTFSLCYAALYP-DKPIKN 173 (367)
T ss_pred CEEEEECCC---CCHHHHCCCHHHHHHHHHHHHHHHHH----HHCCCCCCCEEEEECCHHHHHHHHHHCC-CCCCCC
T ss_conf 489960689---87333114046667677899999998----6507896104314310478999997250-478322
No 73
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=43.36 E-value=21 Score=15.10 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-HHHHHHHHHCCC-EEEEEECCCCCC
Q ss_conf 76786899999999999789879996789806507-999999850898-179995765798
Q gi|254781107|r 58 GRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTP-AVSHLIRKYKAS-GGIILTASHNPA 116 (542)
Q Consensus 58 ~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP-~~~~av~~~~~~-~GImITASHNP~ 116 (542)
.|.++..+...+.+-...++.+|++++. || ++.-++..++.. .|+.|...|+|+
T Consensus 29 ~rv~G~dl~~~ll~~~~~~~~~v~llG~-----~~~~~~~~~~~l~~~yP~l~i~g~~~g~ 84 (172)
T pfam03808 29 ERVAGTDLIPALLERAAERGKRVFLLGG-----KPGVLEKAAARLRARYPGLRIVGTHDGY 84 (172)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 5168599999999999864983899808-----8899999999999887995599987999
No 74
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=43.25 E-value=21 Score=15.09 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=11.8
Q ss_pred EEEECCCHHHHHHHHCCCC-EEEE
Q ss_conf 8753108379999840476-1599
Q gi|254781107|r 317 VARSMPTSAALDRVAEKLN-LKLF 339 (542)
Q Consensus 317 vv~t~~sS~~i~~ia~~~g-~~~~ 339 (542)
|-..++++....++++.+| ..+.
T Consensus 81 IRAAlc~d~~~A~~aR~HNnANVL 104 (171)
T PRK12615 81 IRSALVRDMTTALYAKEELNANVI 104 (171)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
T ss_conf 389996888999999984597289
No 75
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=43.01 E-value=21 Score=15.06 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=17.9
Q ss_pred EEECCCHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 7531083799998404761599828632665
Q gi|254781107|r 318 ARSMPTSAALDRVAEKLNLKLFETPTGWKFF 348 (542)
Q Consensus 318 v~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I 348 (542)
+...-+....++..++.|.-.+....|+...
T Consensus 220 vrV~~~~~~a~~~~~~~G~v~~C~~C~~~~~ 250 (376)
T PRK04338 220 LKVERGAKKADKALENLGYVYHCPECGYREH 250 (376)
T ss_pred EEEECCHHHHHHHHHHCCEEEECCCCCCEEE
T ss_conf 9980677888889974874998899985432
No 76
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=42.65 E-value=22 Score=15.03 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCEEEEE
Q ss_conf 2111231058501233
Q gi|254781107|r 220 AKEILERKLGAPTGSV 235 (542)
Q Consensus 220 ~~~il~~~lg~~~~~~ 235 (542)
+.++| +.+|..+...
T Consensus 183 ~v~vL-~~~G~~V~~~ 197 (397)
T TIGR03379 183 LVKVL-NAMNIGVQLL 197 (397)
T ss_pred HHHHH-HHCCCCEEEC
T ss_conf 99999-9479923716
No 77
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H; InterPro: IPR002856 This family of methyltransferases occurs in both archaea and bacteria. In archaea, members of this family (MtrH) are involved in the energy conservation step of methanogenesis, while in prokaryotes, members of this family whose function has been defined (CmuB) are involved in the metabolism of chloromethane. In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide . Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity . CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin) In bacteria, the pathway of chloromethane utilisation allows the microorganisms that possess it to grow with chloromethane as the sole carbon and energy source. It is initiated by a corrinoid-dependent methyltransferase system involving methyltransferase I (CmuA) and methyltransferase II (CmuB), which transfer the methyl group of chloromethane onto tetrahydrofolate . The methyl group of chloromethane is first transferred by the protein CmuA to its corrinoid moiety, from where it is transferred to tetrahydrofolate by CmuB, thereby yielding methyltetrahydrofolate , . CmuB has methylcobalamin:tetrahydrofolate methyltransferase activity, and catalyzes the conversion of methylcobalamin and tetrahydrofolate to cob(I)alamin and methyltetrahydrofolate. CH3-cob(III)alamin + H4F --> CH3-H4F + cob(I)alamin (H4F = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon compound metabolic process.
Probab=42.47 E-value=11 Score=16.83 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf 10025750589840222675433207803220013378469985035544012211123105850123320157875476
Q gi|254781107|r 167 TKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGG 246 (542)
Q Consensus 167 ~~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~ 246 (542)
...+....-+.-+++-.|++++.++-| .-.+.+|...|-...-+.. .+.+.|...-.++|-.+-
T Consensus 70 nP~~~qi~G~tpEai~~Yldwv~~i~D----------~~P~l~Dst~ge~r~AAa~-~~~E~G~a~r~iyNSiN~----- 133 (323)
T TIGR01114 70 NPYVVQIFGETPEAIVRYLDWVADITD----------ATPFLIDSTSGEARVAAAK-YATEVGLADRAIYNSINA----- 133 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHEEEEC----------CCCEEEECCHHHHHHHHHH-HCCCCCHHHCEEEEHHCC-----
T ss_conf 960453227887898877453031206----------8853775441457888864-201035000011101012-----
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCEEEEEECC-CCC---EEEEECCCC
Q ss_conf 4468542221047888612258607898648-874---568853887
Q gi|254781107|r 247 CHPDPNLIHAKDLYDRMMMHDSADFGAACDG-DGD---RSMILGKGI 289 (542)
Q Consensus 247 ~~PnP~~~~~~~l~~~~~~~~~aDlgiA~Dg-DaD---R~~ivd~g~ 289 (542)
. =++. ++....-..-++.+.+|||| |.- |+.|.++|+
T Consensus 134 -s--~e~~---E~~~l~esd~~aaIVLaFnpmDptVeG~i~il~~G~ 174 (323)
T TIGR01114 134 -S--IEEE---EIQVLKESDLEAAIVLAFNPMDPTVEGKIDILEEGG 174 (323)
T ss_pred -C--CCHH---HHHHHHHCCCCEEEEEECCCCCCCEECEEEEEECCC
T ss_conf -2--0355---799876157440456402788883102255674276
No 78
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=41.83 E-value=22 Score=14.95 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CCCH-HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999997546548838999647---6786-8999999999997898799967898065079999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RFYN-HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~~S-~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
..++++.++.+..+.||+|..-. ++.+ +.++..+........+.|.+--|.| .+........+.+.+ .||+-+
T Consensus 29 e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDHg--~~~e~i~~ai~~Gfs-SVM~Dg 105 (281)
T PRK06806 29 EMVMGAIKAAEELSSPLILQIAEVRLNHSPLHMIGPLMVAAAKKATVPVAVHFDHG--MTFEKIKEALEIGFT-SVMFDG 105 (281)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEEC
T ss_conf 99999999999969998999564333246099999999999974799889973898--999999999982998-799609
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 65798988777358736878657867988999999740
Q gi|254781107|r 112 SHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 112 SHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
||-|-+.| -..++++.+.+...
T Consensus 106 S~l~~eeN----------------i~~Tkevve~Ah~~ 127 (281)
T PRK06806 106 SHYPLEEN----------------IQKTKEIVELAKQY 127 (281)
T ss_pred CCCCHHHH----------------HHHHHHHHHHHHHC
T ss_conf 98999999----------------99999999999885
No 79
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.92 E-value=9.3 Score=17.39 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=11.9
Q ss_pred CCEEEEEECCCCCH-HHHHHH
Q ss_conf 84699850355440-122111
Q gi|254781107|r 204 GFRIDIDCMNAVTG-PYAKEI 223 (542)
Q Consensus 204 ~l~IvvD~~nGa~~-~~~~~i 223 (542)
.++|++||-|.+|. .+++++
T Consensus 196 ~lPVi~D~SHs~G~r~~v~~l 216 (266)
T PRK13398 196 HLPIIVDPSHATGRRELVIPM 216 (266)
T ss_pred CCCEEECCCCCCCCHHHHHHH
T ss_conf 999898885335679999999
No 80
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=40.08 E-value=22 Score=14.97 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=13.2
Q ss_pred CHHHHHHHCCCCCEEEEEECCC-----CCEEEEECCCC
Q ss_conf 0478886122586078986488-----74568853887
Q gi|254781107|r 257 KDLYDRMMMHDSADFGAACDGD-----GDRSMILGKGI 289 (542)
Q Consensus 257 ~~l~~~~~~~~~aDlgiA~DgD-----aDR~~ivd~g~ 289 (542)
+++..++.++...=+.+.||.| |||+.+..+|.
T Consensus 166 ~~ll~~l~~~g~tvi~itHdl~~~~~~~dri~vl~~G~ 203 (205)
T cd03226 166 GELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 99999999799999998039899999799999981999
No 81
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=39.76 E-value=24 Score=14.74 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=11.2
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEE
Q ss_conf 889919999758888785589999
Q gi|254781107|r 474 FDNHSRIIYRISGTDTENSTLRVY 497 (542)
Q Consensus 474 ~~d~~wiliRpSGTEPk~~~iRiy 497 (542)
+++| ++++++|.. .||+.
T Consensus 400 ~~~G--vl~~~~g~~----~i~~~ 417 (442)
T PRK05769 400 FKRG--LLLLGAGKS----AIRII 417 (442)
T ss_pred HHCC--EEEEECCCC----EEEEE
T ss_conf 9699--599317999----79997
No 82
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=39.62 E-value=24 Score=14.73 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=22.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE-EECC--CHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 85388722746599999999987202047871687-5310--8379999840---476159982863
Q gi|254781107|r 284 ILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVA-RSMP--TSAALDRVAE---KLNLKLFETPTG 344 (542)
Q Consensus 284 ivd~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv-~t~~--sS~~i~~ia~---~~g~~~~~t~vG 344 (542)
|...-|.+..++...++-+|..=......+.+.++ .|+- |..+...+|+ +.|+.+.-...-
T Consensus 218 IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~ 284 (388)
T COG0426 218 IAPSHGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLE 284 (388)
T ss_pred EECCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9759985255798999999999970687661799984223787999999987761159962999915
No 83
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=38.35 E-value=25 Score=14.60 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECCC---CCHH-HHHHHHHHHH-HHCC--CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 99999975465488389996476---7868-9999999999-9789--87999678980650799999985089817999
Q gi|254781107|r 37 FIQAIFNNVDCAEKTLVVGGDGR---FYNH-IVIQKIIKIA-AANG--FARIIIGKGGILSTPAVSHLIRKYKASGGIIL 109 (542)
Q Consensus 37 ~~~ai~~~~~~~~~~VvIG~D~R---~~S~-~~a~~~a~~l-~~~G--i~V~~~~~~gi~PTP~~~~av~~~~~~~GImI 109 (542)
-++++.++.+..+.||++..-.. +.+. ......+..+ .+.. +.|.+--|. +.+.-.....-+.+.+ .||+
T Consensus 30 ~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~a~VPV~lHLDH--~~~~e~~~~ai~~GFt-SVM~ 106 (286)
T PRK08610 30 FTQAILEASQEENAPVILGVSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDH--GSSFEKCKEAIDAGFT-SVMI 106 (286)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHCCCC-EEEE
T ss_conf 999999999996879999917668876576889999999999983799888998989--9999999999971999-8998
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 576579898877735873687865786798899999974
Q gi|254781107|r 110 TASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 110 TASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
-+||=|.+.| -..++++.+.+..
T Consensus 107 DgS~l~~eeN----------------i~~Tk~vv~~Ah~ 129 (286)
T PRK08610 107 DASHSPFEEN----------------VATTKKVVEYAHE 129 (286)
T ss_pred CCCCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 1998989999----------------9999999999987
No 84
>pfam08662 eIF2A Eukaryotic translation initiation factor eIF2A. This is a family of eukaryotic translation initiation factors.
Probab=37.14 E-value=16 Score=15.80 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=11.1
Q ss_pred CEEEEEECCCCCEEEEE
Q ss_conf 60789864887456885
Q gi|254781107|r 269 ADFGAACDGDGDRSMIL 285 (542)
Q Consensus 269 aDlgiA~DgDaDR~~iv 285 (542)
.=.-+++.|.+||++|+
T Consensus 61 pv~d~~W~P~g~~F~vi 77 (194)
T pfam08662 61 PIHDFAWSPNGKEFAVI 77 (194)
T ss_pred CEEEEEECCCCCEEEEE
T ss_conf 47999987699889999
No 85
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.65 E-value=25 Score=14.66 Aligned_cols=17 Identities=47% Similarity=0.564 Sum_probs=14.0
Q ss_pred EEEEECCCCCEEEEECC
Q ss_conf 78986488745688538
Q gi|254781107|r 271 FGAACDGDGDRSMILGK 287 (542)
Q Consensus 271 lgiA~DgDaDR~~ivd~ 287 (542)
=|||+|++.||+.+.++
T Consensus 232 NGIA~~~~~~r~~iTGK 248 (262)
T COG3823 232 NGIAHDPQQDRFLITGK 248 (262)
T ss_pred CCEEECCCCCEEEEECC
T ss_conf 43155476886999657
No 86
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family; InterPro: IPR012741 This entry describes a subfamily of the B12 binding domain proteins that include corrinoid proteins specific to four different, mutually non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.; GO: 0031419 cobalamin binding, 0050897 cobalt ion binding, 0015948 methanogenesis.
Probab=36.18 E-value=27 Score=14.38 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=4.5
Q ss_pred HHCCCCCCCCCEE
Q ss_conf 5316521156420
Q gi|254781107|r 436 KNLIGSSFIGQKI 448 (542)
Q Consensus 436 ~~~~~~~~~~~~v 448 (542)
|+..+.-++|-+|
T Consensus 169 Rd~vk~m~GGApv 181 (201)
T TIGR02370 169 RDRVKVMVGGAPV 181 (201)
T ss_pred CCCCCEEECCCCC
T ss_conf 6535622568764
No 87
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=36.03 E-value=27 Score=14.37 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=13.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHH
Q ss_conf 8469985035544012211123
Q gi|254781107|r 204 GFRIDIDCMNAVTGPYAKEILE 225 (542)
Q Consensus 204 ~l~IvvD~~nGa~~~~~~~il~ 225 (542)
+.|+++-.+||-..+-+..+|.
T Consensus 146 ~ck~IvEgANgP~T~eAd~iL~ 167 (254)
T cd05313 146 GCKYVAEGANMPCTAEAIEVFR 167 (254)
T ss_pred CCEEEEECCCCCCCHHHHHHHH
T ss_conf 9829986588999878999999
No 88
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD; InterPro: IPR014234 This entry represents the germination-specific N-acetylmuramoyl-L-alanine amidase CwlD. CwlD from Bacillus subtilis is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in bacterial endospores. CwlD mutants show a germination defect..
Probab=35.87 E-value=16 Score=15.83 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=22.3
Q ss_pred ECCCHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 3108379999840476159982863266542
Q gi|254781107|r 320 SMPTSAALDRVAEKLNLKLFETPTGWKFFNN 350 (542)
Q Consensus 320 t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~ 350 (542)
|+.-|.-+.+..++.|..|+.|+-+++-++.
T Consensus 28 ~L~ia~~lk~~L~~~Ga~V~mTRe~D~dLa~ 58 (192)
T TIGR02883 28 TLEIALKLKDYLQEQGALVVMTREDDKDLAS 58 (192)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 4799999999998569789885227711145
No 89
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=35.54 E-value=28 Score=14.32 Aligned_cols=115 Identities=18% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEE
Q ss_conf 78469985035544012211123105850123320157875476446854222104788861225860789864887456
Q gi|254781107|r 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRS 282 (542)
Q Consensus 203 ~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~ 282 (542)
+.++|-==|+.= .-.+++--| +.|--+++++.+- ||++---......+.+.+++.+ -++.|++=||.=|+
T Consensus 40 k~l~IMevCGgH-eHtI~KYGl-~~LLPeN~~~v~G------PGCPVCv~P~~~ID~a~~LA~~--~~~i~~tfGDM~RV 109 (384)
T TIGR00075 40 KPLKIMEVCGGH-EHTIMKYGL-RDLLPENVELVHG------PGCPVCVTPMEEIDEAIELAEK--PEVIITTFGDMLRV 109 (384)
T ss_pred CCCEEEEECCCC-CCCEEEECH-HHHCCCCEEEECC------CCCCEEECCHHHHHHHHHHHCC--CCEEEEECCCCCCC
T ss_conf 740788513797-331035263-5628764377348------4488135573789999998637--98599822211117
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCC-CEEEEECCCCHH
Q ss_conf 8853887227465999999999872020478716875310837999984047-615998286326
Q gi|254781107|r 283 MILGKGIFVNPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKL-NLKLFETPTGWK 346 (542)
Q Consensus 283 ~ivd~g~~i~~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~-g~~~~~t~vGfk 346 (542)
|+..-.|+-+. ..+..+.||.|+.- ++ +||+++ +.+|+-.-+||-
T Consensus 110 ----------PGs~~SL~~~r------a~G~DvRIVYS~~d--al-~iA~~~Pdr~VVf~aiGFE 155 (384)
T TIGR00075 110 ----------PGSGGSLLQAR------AEGADVRIVYSPMD--AL-KIAKENPDRKVVFFAIGFE 155 (384)
T ss_pred ----------CCCCCCHHHHH------HCCCCEEEEECHHH--HH-HHHHHCCCCCEEEEEECCC
T ss_conf ----------98854478997------55886799808789--99-9998687994799961551
No 90
>PRK07413 hypothetical protein; Validated
Probab=35.42 E-value=28 Score=14.31 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=8.9
Q ss_pred CEEEEEECCCCCEEEEECCCC
Q ss_conf 607898648874568853887
Q gi|254781107|r 269 ADFGAACDGDGDRSMILGKGI 289 (542)
Q Consensus 269 aDlgiA~DgDaDR~~ivd~g~ 289 (542)
++.|+-|..|.-=-+..++|+
T Consensus 191 ~~~~~~~~~~~~I~VYTG~GK 211 (382)
T PRK07413 191 SEDGVPFNSSGGIEIYTGEGK 211 (382)
T ss_pred CCCCCCCCCCCCEEEECCCCC
T ss_conf 534544578897599558997
No 91
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=35.19 E-value=28 Score=14.28 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CCCH-HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999997546548838999647---6786-8999999999997898799967898065079999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RFYN-HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~~S-~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
..+.++..+.+..+.||++..-. ++.+ +.++..+.......++.|.+--|.| .+.-.....-+.+.+ .||+-+
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~--~~~e~~~~ai~~Gft-SVM~Dg 103 (283)
T pfam01116 27 ETINAVLEAAEEANSPVIIQVSPGAAKYAGAEALAAMVRAAAEKYSVPVALHLDHG--ASFEGILEAIEAGFS-SVMIDG 103 (283)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHHCCC-EEEEEC
T ss_conf 99999999999969999999684467558999999999999997799899966777--999999999981998-698638
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6579898877735873687865786798899999974
Q gi|254781107|r 112 SHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 112 SHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
||-|-+.| -..++++.+.+..
T Consensus 104 S~l~~eeN----------------i~~T~~vv~~Ah~ 124 (283)
T pfam01116 104 SHLPFEEN----------------IAITKEVVEYAHA 124 (283)
T ss_pred CCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 97999999----------------9999999999987
No 92
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=34.78 E-value=29 Score=14.24 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=6.3
Q ss_pred HHHHHHHCCCEEEE
Q ss_conf 11123105850123
Q gi|254781107|r 221 KEILERKLGAPTGS 234 (542)
Q Consensus 221 ~~il~~~lg~~~~~ 234 (542)
.++|+ .+|..++.
T Consensus 189 v~vL~-~~G~~V~v 201 (407)
T PRK11274 189 ARVLD-RLGISLVV 201 (407)
T ss_pred HHHHH-HCCCEEEE
T ss_conf 99999-77997962
No 93
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=34.39 E-value=29 Score=14.20 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred EECCCHHHHHHHHCCCCEEEE-ECCCC-HHHHHHHHCCCCEEEECCCCCEECCCCCC--CCCCHHHHHHHH
Q ss_conf 531083799998404761599-82863-26654210269738862112301347421--575167899999
Q gi|254781107|r 319 RSMPTSAALDRVAEKLNLKLF-ETPTG-WKFFNNLLENGMITICGEESFGTGSNHSR--EKDGIWSILFWL 385 (542)
Q Consensus 319 ~t~~sS~~i~~ia~~~g~~~~-~t~vG-fk~I~~~m~~~~~~~ggEeS~G~~~~~~~--dkDgi~aal~~l 385 (542)
|+++|.+. +|....|++.. .|-|| +--+..++++.+|+|=|=..+.++.+=.+ |=+|++.||=+|
T Consensus 193 K~V~~~Rr--~if~~MGi~F~Ln~EvGrD~~l~~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~ALPFL 261 (480)
T TIGR01318 193 KAVLSRRR--EIFTAMGIEFKLNTEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKALPFL 261 (480)
T ss_pred HHHHHHHH--HHHHHCCCEEECCCEEECCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78999999--9997589278658165032555444311484896114334312877887742166642477
No 94
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=33.67 E-value=30 Score=14.13 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECC---CCC-H-HHHHHHHHHHHHHCC--CEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 9999997546548838999647---678-6-899999999999789--87999678980650799999985089817999
Q gi|254781107|r 37 FIQAIFNNVDCAEKTLVVGGDG---RFY-N-HIVIQKIIKIAAANG--FARIIIGKGGILSTPAVSHLIRKYKASGGIIL 109 (542)
Q Consensus 37 ~~~ai~~~~~~~~~~VvIG~D~---R~~-S-~~~a~~~a~~l~~~G--i~V~~~~~~gi~PTP~~~~av~~~~~~~GImI 109 (542)
-+.++.++.+..+.||+|..-. ++. + +.+...+.....+.. +.|.+--|. +.+.......-+.+.+ .||+
T Consensus 30 ~~~Avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~VPV~lHLDH--~~~~e~i~~ai~~Gf~-SVM~ 106 (285)
T PRK07709 30 WTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDH--GSSFEKCKEAIDAGFT-SVMI 106 (285)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCC--CCCHHHHHHHHHCCCC-EEEE
T ss_conf 999999999997889999937458876567789999999999983899988988999--9999999999972997-7985
Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 576579898877735873687865786798899999974
Q gi|254781107|r 110 TASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 110 TASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
-+||=|.+.| -..++++.+.+..
T Consensus 107 D~S~l~~eeN----------------i~~Tk~vv~~Ah~ 129 (285)
T PRK07709 107 DASHHPFEEN----------------VETTKKVVEYAHA 129 (285)
T ss_pred CCCCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 2998999999----------------9999999999987
No 95
>COG4254 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.38 E-value=30 Score=14.10 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=10.5
Q ss_pred EEECCCCCCCCCCCCCEEE
Q ss_conf 9957657989887773587
Q gi|254781107|r 108 ILTASHNPAGATQDFGIKY 126 (542)
Q Consensus 108 mITASHNP~eyN~dnGiK~ 126 (542)
|+++|.-|.+ - |+++
T Consensus 71 ~vnG~rtPl~-e---gm~l 85 (339)
T COG4254 71 MVNGSRTPLV-E---GMAL 85 (339)
T ss_pred HHCCCCCCCC-C---CCCC
T ss_conf 5338887631-2---5655
No 96
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=32.99 E-value=30 Score=14.06 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=25.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 89996476786899999999999789879996789806507999999
Q gi|254781107|r 52 LVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLI 98 (542)
Q Consensus 52 VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av 98 (542)
+|| -|+-..+-.=+..+++-|..+++.+.+ +-||.-.|-.
T Consensus 49 cVI-adttIggv~Eaa~c~ekF~~~~V~~tl------tVTPCWCYGs 88 (584)
T cd03556 49 CVI-ADTTIGRVAEAAACAEKFTRENVGATI------TVTPCWCYGS 88 (584)
T ss_pred EEE-CCCCCCCHHHHHHHHHHHHHCCCCEEE------EEECCCCCCC
T ss_conf 996-366544488889999987662864699------9712023565
No 97
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.77 E-value=31 Score=14.03 Aligned_cols=81 Identities=7% Similarity=0.041 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CCCH-HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999997546548838999647---6786-8999999999997898799967898065079999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RFYN-HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~~S-~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
..++++..+.+..+.||+|..-. ++.+ +.+...+-.......+.|.+--|.| ++........+.+.+ .||+-+
T Consensus 29 e~~~Avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~--~~~e~~~~ai~~Gft-SVM~Dg 105 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAGTPGTISYAGADYIIAIAEVAARKYNIPLALHLDHH--EDLDDIKKKVRAGIR-SVMIDG 105 (284)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEEC
T ss_conf 99999999999978998999675388777999999999999998799999988999--999999999981998-798709
Q ss_pred CCCCCCCC
Q ss_conf 65798988
Q gi|254781107|r 112 SHNPAGAT 119 (542)
Q Consensus 112 SHNP~eyN 119 (542)
||=|.+-|
T Consensus 106 S~lp~eeN 113 (284)
T PRK12737 106 SHLSFEEN 113 (284)
T ss_pred CCCCHHHH
T ss_conf 99999999
No 98
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.46 E-value=31 Score=14.00 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH------HHHHCCCE
Q ss_conf 838999647678689999999999978987999678980650799999------98508981
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHL------IRKYKASG 105 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~a------v~~~~~~~ 105 (542)
+.++|=.|......-+...+.+.|...|+.+.++ .|+.|-|.+.-. .+..++|.
T Consensus 32 k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f--~~V~~nP~~~~v~~~~~~~r~~~~D~ 91 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIY--DGTQPNPTTENVAAGLKLLKENNCDS 91 (383)
T ss_pred CEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEE--CCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 8799982845665746999999998769958996--89527969999999999998739999
No 99
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.32 E-value=31 Score=13.99 Aligned_cols=93 Identities=12% Similarity=0.174 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECCC---CCH-HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999975465488389996476---786-89999999999978987999678980650799999985089817999576
Q gi|254781107|r 37 FIQAIFNNVDCAEKTLVVGGDGR---FYN-HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTAS 112 (542)
Q Consensus 37 ~~~ai~~~~~~~~~~VvIG~D~R---~~S-~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITAS 112 (542)
-+.++..+.+..+.||+|..-.. +.+ +.++..+........+.|.+--|.| .++-........+.+ .||+-+|
T Consensus 25 ~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~--~~~e~i~~ai~~Gf~-SVM~DgS 101 (276)
T cd00947 25 TLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHG--SSFELIKRAIRAGFS-SVMIDGS 101 (276)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEECC
T ss_conf 9999999999968999999786177658999999999999997799999966876--789999999983998-7985289
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 579898877735873687865786798899999974
Q gi|254781107|r 113 HNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 113 HNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
|-|-+-| -..++++.+.+..
T Consensus 102 ~lp~eeN----------------i~~T~~vv~~ah~ 121 (276)
T cd00947 102 HLPFEEN----------------VAKTKEVVELAHA 121 (276)
T ss_pred CCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 8999999----------------9999999999998
No 100
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=32.25 E-value=31 Score=13.98 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CCCHHHHHHHHH----HHHHH--CCCEEEEECCCCCCCCHH-HHHHHHHHCCCE
Q ss_conf 99999997546548838999647---678689999999----99997--898799967898065079-999998508981
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RFYNHIVIQKII----KIAAA--NGFARIIIGKGGILSTPA-VSHLIRKYKASG 105 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~~S~~~a~~~a----~~l~~--~Gi~V~~~~~~gi~PTP~-~~~av~~~~~~~ 105 (542)
..++++..+.+..+.||+|..-. .+.+..+....+ +.... ..+.|.+--|.| .+.- +-.++ +.+.+
T Consensus 35 e~~~Avi~AAee~~sPvIlq~s~g~~~~~~~~~l~~~~~~~~~~a~~~~~~VPV~lHLDHg--~~~e~i~~ai-~~GFt- 110 (321)
T PRK07084 35 EQLQAIIMACVETKSPVILQVSKGARSYANATLLRYMAQGAVEYAKELGSPIPIVLHLDHG--DSFELCKDCI-DSGFS- 110 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHH-HCCCC-
T ss_conf 9999999999997999899927487765883789999999999999858997789989999--9999999999-80998-
Q ss_pred EEEEECCCCCCCCC
Q ss_conf 79995765798988
Q gi|254781107|r 106 GIILTASHNPAGAT 119 (542)
Q Consensus 106 GImITASHNP~eyN 119 (542)
.||+-+||-|.+.|
T Consensus 111 SVM~DgS~lp~eeN 124 (321)
T PRK07084 111 SVMIDGSHLPYEEN 124 (321)
T ss_pred EEEECCCCCCHHHH
T ss_conf 79963997999999
No 101
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=32.15 E-value=31 Score=13.97 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 999997546548838999647678689999999999978987999678980650799999985089817
Q gi|254781107|r 38 IQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGG 106 (542)
Q Consensus 38 ~~ai~~~~~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~G 106 (542)
..+|.+++...+-+|+=+|-.| +.+.. +.-..-....|.+++++.- .+..+-.+.-++.+..++-|
T Consensus 13 GtAIC~rL~~dG~~V~An~~p~-N~~~a-~~W~~~~~~~g~~~~~~~~-DV~~~e~c~~~v~~v~a~lG 78 (244)
T TIGR01829 13 GTAICTRLAKDGYRVAANYVPS-NEERA-EAWLQEQGAQGFDFAVVEG-DVSSFEDCKAAVAKVEAELG 78 (244)
T ss_pred HHHHHHHHHHCCCEEEECCCCC-CHHHH-HHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCC
T ss_conf 6899999987598898817898-25899-9999862698514789872-76777899999999997119
No 102
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, L subunit; InterPro: IPR012737 Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form (2.7.1 from EC) with a phosphoprotein donor related to PTS transport proteins. The sequences in this entry represent the subunit homologous to the E. coli YcgS subunit..
Probab=32.13 E-value=30 Score=14.13 Aligned_cols=30 Identities=40% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCCEECCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 269738862112301347421575-1678999999997
Q gi|254781107|r 353 ENGMITICGEESFGTGSNHSREKD-GIWSILFWLNILA 389 (542)
Q Consensus 353 ~~~~~~~ggEeS~G~~~~~~~dkD-gi~aal~~le~la 389 (542)
.+++|.+=||.|.|+. | |-.++.++++.|+
T Consensus 169 tKGRASYLGERSiGH~-------DPGA~SS~~~~~al~ 199 (200)
T TIGR02365 169 TKGRASYLGERSIGHI-------DPGATSSYLLLNALA 199 (200)
T ss_pred CCCCHHHCCCCCCCCC-------CCHHHHHHHHHHHHH
T ss_conf 0241002034334550-------816789999999971
No 103
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.09 E-value=31 Score=13.96 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCCEEEEECCCC
Q ss_conf 379999840476159982863
Q gi|254781107|r 324 SAALDRVAEKLNLKLFETPTG 344 (542)
Q Consensus 324 S~~i~~ia~~~g~~~~~t~vG 344 (542)
....+++.+..|.-++....|
T Consensus 227 a~~ad~~~e~~g~~~~c~~cg 247 (380)
T COG1867 227 ARRADKLLENLGYIYHCSRCG 247 (380)
T ss_pred CHHHHHHHHHCCCEEECCCCC
T ss_conf 305778997547078826641
No 104
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=32.01 E-value=32 Score=13.95 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=25.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 6548838999647678689999999999978987
Q gi|254781107|r 46 DCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFA 79 (542)
Q Consensus 46 ~~~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~ 79 (542)
...+||+||||+.+ -=+.|+..+|.-+.++|-+
T Consensus 85 GTtGKPtVVgYt~~-D~~~ws~vvARSi~aAGGr 117 (431)
T TIGR02155 85 GTTGKPTVVGYTQK-DLDTWSEVVARSIRAAGGR 117 (431)
T ss_pred CCCCCCEEEECCHH-HHHHHHHHHHHHHHHCCCC
T ss_conf 88999769722735-4677999999998752789
No 105
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=31.49 E-value=32 Score=13.90 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=28.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 38999647678689999999999978987999678980650799999
Q gi|254781107|r 51 TLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHL 97 (542)
Q Consensus 51 ~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~a 97 (542)
.++|=.|.-..---+...+.+.|..+|+.+.++ .|+.|-|.+...
T Consensus 31 ~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf--~~v~pnP~~~~V 75 (381)
T PRK10624 31 KALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIY--DGVKPNPTISVV 75 (381)
T ss_pred EEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEE--CCCCCCCCHHHH
T ss_conf 799996965455636999999998769839998--892589899999
No 106
>KOG2044 consensus
Probab=30.58 E-value=32 Score=13.96 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHCCCE------EEEECCCCCCC-CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 99978987------99967898065-079999998508981799957657989887773587368786578679889999
Q gi|254781107|r 72 IAAANGFA------RIIIGKGGILS-TPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFE 144 (542)
Q Consensus 72 ~l~~~Gi~------V~~~~~~gi~P-TP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~ 144 (542)
-+.+.|.. .-.++++-|+| ||.+.-+...+.. =|..--+|+| .|. .+||+.++. -++.+-+.+|.+
T Consensus 138 e~~~~G~~lpp~~~~e~fDSNcITPGTpFM~~La~aLrY--yI~~rLn~DP-gWk---NikvIlSDA-nVPGEGEHKIM~ 210 (931)
T KOG2044 138 EFEAEGKFLPPKVKKETFDSNCITPGTPFMDRLAKALRY--YIHDRLNSDP-GWK---NIKVILSDA-NVPGEGEHKIMS 210 (931)
T ss_pred HHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHCCCC-CCC---CEEEEEECC-CCCCCCHHHHHH
T ss_conf 998548868813321403457567997689999999999--9987622895-603---248998458-899853368999
Q ss_pred HHHH
Q ss_conf 9974
Q gi|254781107|r 145 ESKK 148 (542)
Q Consensus 145 ~~~~ 148 (542)
.|..
T Consensus 211 yIR~ 214 (931)
T KOG2044 211 YIRS 214 (931)
T ss_pred HHHH
T ss_conf 9997
No 107
>TIGR00829 FRU PTS system, Fru family, IIB component; InterPro: IPR003353 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). IIB (2.7.1.69 from EC) is is phosphorylated by phospho-IIA, before the phosphoryl group is transferred to the sugar substrate.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=30.45 E-value=31 Score=14.03 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCEEEEECCCHHHHHHHHCCCCEEE-EECC
Q ss_conf 7168753108379999840476159-9828
Q gi|254781107|r 314 LVGVARSMPTSAALDRVAEKLNLKL-FETP 342 (542)
Q Consensus 314 ~~~vv~t~~sS~~i~~ia~~~g~~~-~~t~ 342 (542)
+.+|..|+|.-..++..|+++|.++ +||.
T Consensus 7 PTGiAHTFMAaEale~~Ak~~g~~vkVETQ 36 (85)
T TIGR00829 7 PTGIAHTFMAAEALEKAAKKRGWEVKVETQ 36 (85)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 983003577789999999846997888852
No 108
>PRK08671 methionine aminopeptidase; Provisional
Probab=29.66 E-value=35 Score=13.70 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCEEEEEECC---CCCEEEEECCCCCCCCHHHHHHHHHH--HHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECC
Q ss_conf 8607898648---87456885388722746599999999--987202047871687531083799998404761599828
Q gi|254781107|r 268 SADFGAACDG---DGDRSMILGKGIFVNPSDSLAIMVAN--AGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETP 342 (542)
Q Consensus 268 ~aDlgiA~Dg---DaDR~~ivd~g~~i~~~d~l~ll~~~--~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~ 342 (542)
+.|+|.-.|| |+=+-..+++.. .+++ -.+.. ...++.-+.+.. .---+..++++++++|+.+++-.
T Consensus 79 kiD~g~~idG~~~d~a~T~~vg~~~----~~Li-~aa~~al~~ai~~~kpG~~----~~dIg~~I~~~~~~~g~~~v~~~ 149 (293)
T PRK08671 79 KLDLGAHVDGYIADTAVTVDLGGKY----SDLV-EASREALEAAIEIVKPGVS----VGEIGRAIEETIKSYGFKPIRNL 149 (293)
T ss_pred EEEEEEEECCEEEEEEEEEEECCCH----HHHH-HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEECCC
T ss_conf 9978889899998888999979616----8999-9999999999987069979----78999999999998698895144
Q ss_pred CCHHHHHH-HHCCCCE
Q ss_conf 63266542-1026973
Q gi|254781107|r 343 TGWKFFNN-LLENGMI 357 (542)
Q Consensus 343 vGfk~I~~-~m~~~~~ 357 (542)
+||. |++ .+.++..
T Consensus 150 ~gHg-igry~iH~~~~ 164 (293)
T PRK08671 150 TGHG-IERYDLHAGPS 164 (293)
T ss_pred CCCC-CCCCCCCCCCE
T ss_conf 4467-66515427987
No 109
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.63 E-value=35 Score=13.70 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 838999647678689999999999978987999678980650799999
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHL 97 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~a 97 (542)
++++|=-|.......+...+.+.|...|+.+.+++ ++.|-|.+.-.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~--~v~p~P~~~~v 75 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFD--EVEPEPTIETV 75 (377)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCCCCHHHH
T ss_conf 71599979863110669999999874498289956--88999988899
No 110
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.23 E-value=35 Score=13.65 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCC---CCHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999999975465488389996476---78689999999-99997898799967898065079999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDGR---FYNHIVIQKII-KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~R---~~S~~~a~~~a-~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
..+.++.++.+..+.||+|+.-.. +.+.++....+ .......+.|.+--|.| .+........+.+.+ .||+-+
T Consensus 29 e~~~Avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~--~~~e~i~~ai~~Gft-SVM~Dg 105 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG--KTFEDVKQAVRAGFT-SVMIDG 105 (283)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEEC
T ss_conf 99999999999978698999775067555999999999999998699899975888--999999999973998-898609
Q ss_pred CCCCCCCC
Q ss_conf 65798988
Q gi|254781107|r 112 SHNPAGAT 119 (542)
Q Consensus 112 SHNP~eyN 119 (542)
||=|.+.|
T Consensus 106 S~l~~eeN 113 (283)
T PRK07998 106 AALPFEEN 113 (283)
T ss_pred CCCCHHHH
T ss_conf 98999999
No 111
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=29.20 E-value=20 Score=15.30 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=43.9
Q ss_pred EEECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 84022267543320780322001337846998503554401221112310585012332015787547644685422210
Q gi|254781107|r 178 IDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAK 257 (542)
Q Consensus 178 ~d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~ 257 (542)
.+.+-.|++++.++-| -.+.+|+.-|-...-..+.. .+.|...-.++|.. |++...+
T Consensus 84 ~Eai~kYiDfvadVtD-----------sPfliDSt~gevr~aaak~a-~EvGladR~iyNSI----------n~si~~~- 140 (313)
T COG1962 84 PEAIIKYIDFVADVTD-----------SPFLIDSTEGEVRAAAAKYA-SEVGLADRAIYNSI----------NASIEDA- 140 (313)
T ss_pred HHHHHHHHHHHEECCC-----------CCEEECCCCHHHHHHHHHHH-HHHCHHHHHHHHCC----------CCCCCHH-
T ss_conf 8999988775223356-----------86564165067899887456-55243566665236----------7553489-
Q ss_pred HHHHHHHCCCCCEEEEEECCCC----CEEEEECCCC
Q ss_conf 4788861225860789864887----4568853887
Q gi|254781107|r 258 DLYDRMMMHDSADFGAACDGDG----DRSMILGKGI 289 (542)
Q Consensus 258 ~l~~~~~~~~~aDlgiA~DgDa----DR~~ivd~g~ 289 (542)
+.....-....+.+.++|++-- -|+.+.++|.
T Consensus 141 EieaL~eSd~eaaIVL~fn~md~sv~grl~ile~g~ 176 (313)
T COG1962 141 EIEALAESDVEAAIVLAFNPMDPSVEGRLQILEKGA 176 (313)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999988456650368972688810566789988445
No 112
>PRK06696 uridine kinase; Validated
Probab=29.11 E-value=35 Score=13.64 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHH--HHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 999999999754654883899964767868--9999999999978987999678980
Q gi|254781107|r 34 TENFIQAIFNNVDCAEKTLVVGGDGRFYNH--IVIQKIIKIAAANGFARIIIGKGGI 88 (542)
Q Consensus 34 ~~~~~~ai~~~~~~~~~~VvIG~D~R~~S~--~~a~~~a~~l~~~Gi~V~~~~~~gi 88 (542)
+..++..|... ..+++++||-|+...|. .||+.+++.|...|..|..+.-++.
T Consensus 11 ~~~~~~~i~~~--~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf 65 (227)
T PRK06696 11 VKEIANHILTL--NLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDF 65 (227)
T ss_pred HHHHHHHHHHC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999835--99986899977899878799999999999746994899715443
No 113
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.92 E-value=24 Score=14.73 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 8389996476786899999999999789879
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFAR 80 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V 80 (542)
++.+|+.=+=.-|++.+..+|+.+...|++.
T Consensus 15 k~~lIAGPC~iES~e~~~~~A~~lk~~g~~~ 45 (250)
T PRK13397 15 KNNFIVGPCSIESYDHIRLAASSAKKLGYNY 45 (250)
T ss_pred CCCEEECCCHHCCHHHHHHHHHHHHHCCCCE
T ss_conf 8878855873309999999999999849885
No 114
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=28.31 E-value=14 Score=16.28 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC--CCHHHHHHH
Q ss_conf 999999999978987999678980650799999985089817999576579898877735873687865--786798899
Q gi|254781107|r 65 VIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGS--ASEQQTEDI 142 (542)
Q Consensus 65 ~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~--~~~~~~~~I 142 (542)
+...+.+++.+.|..-+ -||++-|+=. +....| ..|+.+. ..=|+|.+.+|.. +.|+.|..|
T Consensus 24 i~~~i~~~f~~~Gf~~I--------~TP~lE~~e~-~~~~~g---~~~d~i~----k~~y~f~D~~g~~l~LRpD~T~pi 87 (424)
T CHL00201 24 IHEKAATLLKLANYQEI--------RTPIFENTEL-FDRGIG---EETDIVN----KEMYRFFDRGNRSITLRPEGTASI 87 (424)
T ss_pred HHHHHHHHHHHCCCEEE--------ECCCCCCHHH-HCCCCC---CCCHHHH----HHHEEEECCCCCEEEECCCCHHHH
T ss_conf 99999999998599250--------4754041988-623578---7420566----653254559998888678770999
Q ss_pred HHH
Q ss_conf 999
Q gi|254781107|r 143 FEE 145 (542)
Q Consensus 143 ~~~ 145 (542)
...
T Consensus 88 aR~ 90 (424)
T CHL00201 88 VRA 90 (424)
T ss_pred HHH
T ss_conf 999
No 115
>TIGR01956 NusG_myco NusG family protein; InterPro: IPR010216 This entry represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged from those in bacterial species, and although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system, which includes this family as a member.; GO: 0003711 transcription elongation regulator activity, 0006355 regulation of transcription DNA-dependent.
Probab=28.04 E-value=37 Score=13.52 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCCCCC----CCCCH--HHHHHHCCCCCEEEEEE----CCCCCE-EEEECCCCCCC
Q ss_conf 468542----22104--78886122586078986----488745-68853887227
Q gi|254781107|r 248 HPDPNL----IHAKD--LYDRMMMHDSADFGAAC----DGDGDR-SMILGKGIFVN 292 (542)
Q Consensus 248 ~PnP~~----~~~~~--l~~~~~~~~~aDlgiA~----DgDaDR-~~ivd~g~~i~ 292 (542)
.|=|.+ .++++ +......+...++.+.. |-|+|- +-++|.|..+.
T Consensus 127 kPiP~s~~~~~NLf~~~~~k~I~~n~~krvlv~~~~~~~~e~~~riefldsGnnf~ 182 (335)
T TIGR01956 127 KPIPISDAEAENLFELKMLKGISVNKKKRVLVTQTAIVEMEENKRIEFLDSGNNFD 182 (335)
T ss_pred CCCCCCHHHHHHCCHHHHHCCCCCCCCCCEEEECCCCCCCHHCCEEEEECCCCCHH
T ss_conf 26647711243111066613211366666787057423611104042410678611
No 116
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=27.98 E-value=37 Score=13.51 Aligned_cols=71 Identities=7% Similarity=0.122 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHCCCEEE---EECCCCCCCCHHHHHH-HHHHCCCEE-EEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 7868999999999997898799---9678980650799999-985089817-9995765798988777358736878657
Q gi|254781107|r 60 FYNHIVIQKIIKIAAANGFARI---IIGKGGILSTPAVSHL-IRKYKASGG-IILTASHNPAGATQDFGIKYNTSSGGSA 134 (542)
Q Consensus 60 ~~S~~~a~~~a~~l~~~Gi~V~---~~~~~gi~PTP~~~~a-v~~~~~~~G-ImITASHNP~eyN~dnGiK~~~~~G~~~ 134 (542)
+.=+.|.+.-.++. .|++.. +--+.|+.|--.=... ..-++..-| |.||=+- .+
T Consensus 59 PGHErFIknMlAG~--~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~D-------------------lv 117 (615)
T PRK10512 59 PGHEKFLSNMLAGV--GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKAD-------------------RV 117 (615)
T ss_pred CCHHHHHHHHHHHH--HHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC-------------------CC
T ss_conf 98389999997446--4378899999889987723799999999819982899997765-------------------68
Q ss_pred CHHHHHHHHHHHHHHCC
Q ss_conf 86798899999974050
Q gi|254781107|r 135 SEQQTEDIFEESKKITS 151 (542)
Q Consensus 135 ~~~~~~~I~~~~~~~~~ 151 (542)
+++.-..+++.+.+...
T Consensus 118 d~e~l~~v~~ei~~~l~ 134 (615)
T PRK10512 118 DEARIDEVRRQVLEVLR 134 (615)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 97999999999999984
No 117
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=27.91 E-value=37 Score=13.51 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=43.4
Q ss_pred EECHHHHHHHHHCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCH
Q ss_conf 40222675433207803220013378469985035544012211123105850123320157875476446854222104
Q gi|254781107|r 179 DPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKD 258 (542)
Q Consensus 179 d~~~~Y~~~l~~~~d~~~i~~~~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~~ 258 (542)
+++..|++++.++- +..+.+|.--+....-..... .++|...-.++|-. ++.-++++...
T Consensus 82 EA~~kYidfv~~~~-----------d~PfliDSt~~~aR~aa~k~a-~E~GladR~IYNSI--------n~s~~~eEiea 141 (310)
T PRK00979 82 EAIEKYIDFVSEID-----------DTPFLIDSTSGDARAAAAKYA-TEVGLADRAIYNSI--------NMSIEEEEIEA 141 (310)
T ss_pred HHHHHHHHHHHHCC-----------CCCEEECCCCHHHHHHHHHHH-HHHCHHHHHHHHHC--------CCCCCHHHHHH
T ss_conf 99999988774046-----------787574388678889998676-65144677787506--------76679899999
Q ss_pred HHHHHHCCCCCEEEEEECCCC----CEEEEECCC
Q ss_conf 788861225860789864887----456885388
Q gi|254781107|r 259 LYDRMMMHDSADFGAACDGDG----DRSMILGKG 288 (542)
Q Consensus 259 l~~~~~~~~~aDlgiA~DgDa----DR~~ivd~g 288 (542)
|. -..-++-+.+||||-- .|+-++.++
T Consensus 142 L~---esdi~aaIiLaFnp~dpsv~gr~~~l~~g 172 (310)
T PRK00979 142 LK---ESDIDAAIVLAFNPMDPSVEGRLKMLEDG 172 (310)
T ss_pred HH---HCCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 98---56997689986079999723468998706
No 118
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=27.84 E-value=33 Score=13.85 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=10.3
Q ss_pred EEEEEECCCEEEEEECCCCC
Q ss_conf 08999889919999758888
Q gi|254781107|r 469 GIRVVFDNHSRIIYRISGTD 488 (542)
Q Consensus 469 Gik~~~~d~~wiliRpSGTE 488 (542)
+.+|.+.+|.|+- | +|+|
T Consensus 68 p~hf~y~~g~W~~-R-~G~~ 85 (103)
T PRK01379 68 PYHFFYEQGKWKN-R-AGLE 85 (103)
T ss_pred CCCCEECCCEEEE-C-CCHH
T ss_conf 7275445998674-8-8717
No 119
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=27.61 E-value=37 Score=13.47 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.3
Q ss_pred CCCCEEEEECC
Q ss_conf 88745688538
Q gi|254781107|r 277 GDGDRSMILGK 287 (542)
Q Consensus 277 gDaDR~~ivd~ 287 (542)
..+||+.++|+
T Consensus 111 ~~g~~VlivDD 121 (174)
T PRK02304 111 KPGDRVLIVDD 121 (174)
T ss_pred CCCCEEEEEEE
T ss_conf 89999999971
No 120
>pfam11823 DUF3343 Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.26 E-value=38 Score=13.43 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999999997898799967898065079999998508981799957
Q gi|254781107|r 65 VIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 65 ~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
-+..+-+.|..+|+.+. ++||| +...+++|+.+=-
T Consensus 13 ~a~~~e~~lk~~~i~~~------liP~P------r~is~~CGlai~~ 47 (73)
T pfam11823 13 HALKAEKLLKKAGIKVK------LIPTP------REISSGCGLAIKF 47 (73)
T ss_pred HHHHHHHHHHHCCCCEE------EECCC------HHHCCCCCEEEEE
T ss_conf 99999999988899879------95798------5554799639997
No 121
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms . The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=26.95 E-value=38 Score=13.40 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCHHHHHHHHH-HHHHHCCCEE
Q ss_conf 838999647678689999999-9999789879
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKII-KIAAANGFAR 80 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a-~~l~~~Gi~V 80 (542)
+|+|+..-.+-.-..+++.+. +.|+-+|-++
T Consensus 35 PPlV~a~Ei~~L~~~LA~vA~G~aFLLQGGDC 66 (450)
T TIGR01358 35 PPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDC 66 (450)
T ss_pred CCEECHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78013578999999999998300100235521
No 122
>KOG2781 consensus
Probab=26.70 E-value=31 Score=13.97 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=26.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 9964767868999999999997898799967898065079999998508981799957657989
Q gi|254781107|r 54 VGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAG 117 (542)
Q Consensus 54 IG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~e 117 (542)
|.++-|.-+.+...... +.+.|..+. + .+=-=-|+- .--.+.-||||-||||..
T Consensus 42 ip~elrkda~~l~d~~~--~ed~~~~~~---~----~~vddEy~~-ag~~dPKimvTTSR~PSs 95 (290)
T KOG2781 42 IPKELRKDALLLKDEIY--YEDEGGEAD---D----SHVDDEYRW-AGEEDPKIMVTTSRDPSS 95 (290)
T ss_pred CCHHHHHHHHHHHHHHH--CCCCCCCCC---C----CCCCHHHHH-CCCCCCCEEEEECCCCHH
T ss_conf 87677776788665541--245566564---3----443578774-457798279871789507
No 123
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=26.53 E-value=39 Score=13.35 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEE--ECCCCC-CCC
Q ss_conf 846998503554401221112310585012332--015787-547
Q gi|254781107|r 204 GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR--NFIPLE-DFG 245 (542)
Q Consensus 204 ~l~IvvD~~nGa~~~~~~~il~~~lg~~~~~~~--~~~pd~-~F~ 245 (542)
++=+|+|+.+=- ++-.= .+.||.|++.+. ||+||+ |||
T Consensus 159 d~l~viD~~~E~---IAv~E-A~kLgIPvvA~vDTNCdPd~vD~~ 199 (227)
T TIGR01011 159 DLLFVIDPRKEK---IAVAE-ARKLGIPVVAIVDTNCDPDVVDYP 199 (227)
T ss_pred CEEEEECCCCCH---HHHHH-HHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 708997482106---89999-733799789870478888866502
No 124
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.17 E-value=40 Score=13.31 Aligned_cols=94 Identities=6% Similarity=0.085 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEECC---CCCHH-HHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99999997546548838999647---67868-999999999997898799967898065079999998508981799957
Q gi|254781107|r 36 NFIQAIFNNVDCAEKTLVVGGDG---RFYNH-IVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTA 111 (542)
Q Consensus 36 ~~~~ai~~~~~~~~~~VvIG~D~---R~~S~-~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITA 111 (542)
..+.++.++.+..+.||++..-. ++.+. .+...+........+.|.+--|.| .+.-......+.+.+ -||+-+
T Consensus 29 e~~~Avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH~--~~~e~i~~ai~~Gft-SVM~Dg 105 (284)
T PRK09195 29 ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH--EKFDDIAQKVRSGVR-SVMIDG 105 (284)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEEC
T ss_conf 99999999999959998999885166447989999999999987799889966987--999999999974998-688638
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6579898877735873687865786798899999974
Q gi|254781107|r 112 SHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 112 SHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
||-|.+.| -..++++.+.+..
T Consensus 106 S~l~~eeN----------------i~~Tk~vv~~Ah~ 126 (284)
T PRK09195 106 SHLPFAQN----------------ISLVKEVVDFCHR 126 (284)
T ss_pred CCCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 98999999----------------9999999999987
No 125
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=25.94 E-value=34 Score=13.72 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCHHHHHHHCCCCCEEEEEECCC----CCEEEEECCCCCCCCHHH
Q ss_conf 10478886122586078986488----745688538872274659
Q gi|254781107|r 256 AKDLYDRMMMHDSADFGAACDGD----GDRSMILGKGIFVNPSDS 296 (542)
Q Consensus 256 ~~~l~~~~~~~~~aDlgiA~DgD----aDR~~ivd~g~~i~~~d~ 296 (542)
..++..++..+...=+.+.||.+ |||+.+.++|..+..+++
T Consensus 178 i~~~i~~l~~~G~Tvi~VsHd~~~~~~aDriivm~~G~~~~~G~i 222 (226)
T cd03270 178 LIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEI 222 (226)
T ss_pred HHHHHHHHHHCCCEEEEEEECHHHHHHCCEEEEECCCCCCCCCEE
T ss_conf 999999999769989999725789984899999449975569689
No 126
>KOG0478 consensus
Probab=25.71 E-value=27 Score=14.40 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=12.2
Q ss_pred CCEEEEEECCCCCEEEE
Q ss_conf 86078986488745688
Q gi|254781107|r 268 SADFGAACDGDGDRSMI 284 (542)
Q Consensus 268 ~aDlgiA~DgDaDR~~i 284 (542)
+...+++.|||.-+++.
T Consensus 501 GLTayVtrd~dtkqlVL 517 (804)
T KOG0478 501 GLTAYVTKDPDTRQLVL 517 (804)
T ss_pred CCEEEEEECCCCCEEEE
T ss_conf 00356776576554665
No 127
>TIGR01687 moaD_arch MoaD family protein; InterPro: IPR010038 Members of this family appear to be archaeal and bacterial (proteobacteria and Thermus) versions of MoaD, subunit 1 of molybdopterin converting factor..
Probab=25.57 E-value=41 Score=13.24 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=37.2
Q ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCCCCCCC--CCCC
Q ss_conf 24688899998899882966121100136877899999999998775316521156420100000001134677--3746
Q gi|254781107|r 390 VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGN--VSDK 467 (542)
Q Consensus 390 ~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~~~~~~~~~--i~~~ 467 (542)
..++|+.|++++|.++||.. ..+++.+. ...... .| .-..||+ +..+
T Consensus 23 ~~g~tv~dll~~l~~~Yp~~--------------~~e~~~et--~~~~~~-------~v--------~ilvNGran~~~l 71 (93)
T TIGR01687 23 EDGKTVGDLLEELSSRYPKE--------------FSELFKET--GLGLVP-------NV--------IILVNGRANVDWL 71 (93)
T ss_pred CCCCCHHHHHHHHHHHCCHH--------------HHHHHCCC--CCCCCC-------EE--------EEEECCCCCCCCC
T ss_conf 99980799899988615655--------------66651477--887646-------57--------8985164143220
Q ss_pred CEEEEEECCCEEEEEEC
Q ss_conf 70899988991999975
Q gi|254781107|r 468 QGIRVVFDNHSRIIYRI 484 (542)
Q Consensus 468 dGik~~~~d~~wiliRp 484 (542)
||++..|.||.-+.|=|
T Consensus 72 ~GL~~~LkdGD~vai~P 88 (93)
T TIGR01687 72 EGLETELKDGDVVAIFP 88 (93)
T ss_pred CCCCCCCCCCCEEEEEC
T ss_conf 36575232787567506
No 128
>KOG4609 consensus
Probab=25.24 E-value=41 Score=13.20 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCCCCEEEEEECCCE--EEEEECCCCCCCCCEEEEEEEE
Q ss_conf 374670899988991--9999758888785589999995
Q gi|254781107|r 464 VSDKQGIRVVFDNHS--RIIYRISGTDTENSTLRVYIDN 500 (542)
Q Consensus 464 i~~~dGik~~~~d~~--wiliRpSGTEPk~~~iRiy~E~ 500 (542)
+++..=+|+.+...| |++++|||-= .+|+.-.+
T Consensus 239 ~PpegWlR~nlnh~SiTWlti~PsG~v----svr~lGds 273 (284)
T KOG4609 239 FPPEGWLRMNLNHCSITWLTISPSGHV----SVRSLGDS 273 (284)
T ss_pred CCCCHHHEECCCCCCEEEEEECCCCCE----EEEECCCC
T ss_conf 794043121146751578997157867----89861565
No 129
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=25.21 E-value=41 Score=13.19 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=10.1
Q ss_pred EEEECCCHHHHHHHHCCCC
Q ss_conf 8753108379999840476
Q gi|254781107|r 317 VARSMPTSAALDRVAEKLN 335 (542)
Q Consensus 317 vv~t~~sS~~i~~ia~~~g 335 (542)
|-..++++....++++.+|
T Consensus 82 IRAal~~d~~~A~~ar~HN 100 (149)
T PRK05571 82 IRAALCHDTYSAHLAREHN 100 (149)
T ss_pred EEEEEECCHHHHHHHHHHC
T ss_conf 6999867889999999866
No 130
>PRK12857 putative aldolase; Reviewed
Probab=25.20 E-value=41 Score=13.19 Aligned_cols=93 Identities=10% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCC---CCHHH-HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999975465488389996476---78689-999999999978987999678980650799999985089817999576
Q gi|254781107|r 37 FIQAIFNNVDCAEKTLVVGGDGR---FYNHI-VIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTAS 112 (542)
Q Consensus 37 ~~~ai~~~~~~~~~~VvIG~D~R---~~S~~-~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITAS 112 (542)
-+.++..+.+..+.||++..-.. +.+-+ +...+........+.|.+--|.| .+.-........+.+ .||+-+|
T Consensus 30 ~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VpV~lHLDH~--~~~e~i~~ai~~Gf~-SVM~DgS 106 (284)
T PRK12857 30 IVQAIVAAAEAERSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG--TDFEQVMKCIRNGFT-SVMIDGS 106 (284)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHHHCCCC-EEEEECC
T ss_conf 9999999999978998999171477657999999999999997699899967988--999999999980998-7997289
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 579898877735873687865786798899999974
Q gi|254781107|r 113 HNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKK 148 (542)
Q Consensus 113 HNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~ 148 (542)
|-|.+-| -..++++.+.+..
T Consensus 107 ~l~~eeN----------------i~~Tk~vv~~ah~ 126 (284)
T PRK12857 107 KLPLEEN----------------IALTKKVVEIAHA 126 (284)
T ss_pred CCCHHHH----------------HHHHHHHHHHHHH
T ss_conf 8999999----------------9999999999987
No 131
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=24.63 E-value=26 Score=14.46 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=7.3
Q ss_pred CCCHHHHHHHH
Q ss_conf 75167899999
Q gi|254781107|r 375 KDGIWSILFWL 385 (542)
Q Consensus 375 kDgi~aal~~l 385 (542)
||++.++..+.
T Consensus 415 rDAl~AAAeli 425 (591)
T PRK13799 415 KDAAAAAAEIA 425 (591)
T ss_pred HHHHHHHHHHH
T ss_conf 10999999999
No 132
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=24.46 E-value=43 Score=13.11 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=69.4
Q ss_pred HHHHHHCCCCEEEE--ECCCCHHHHHHHHCCCCEEEECCCCCEECCCCC-------------------CCCC--------
Q ss_conf 99998404761599--828632665421026973886211230134742-------------------1575--------
Q gi|254781107|r 326 ALDRVAEKLNLKLF--ETPTGWKFFNNLLENGMITICGEESFGTGSNHS-------------------REKD-------- 376 (542)
Q Consensus 326 ~i~~ia~~~g~~~~--~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~-------------------~dkD-------- 376 (542)
-|++|++++++.++ ++--||- ...-.|+||.+| +-++.+ ++=|
T Consensus 232 ~i~~v~~~~~I~lIlD~VQAG~~-------R~G~~FaFE~AG-I~PD~v~~SKavGGng~PLAv~~i~~~fD~~~Pa~H~ 303 (445)
T TIGR00709 232 KIREVTRKHDIKLILDEVQAGFG-------RSGKMFAFEHAG-IEPDVVVLSKAVGGNGLPLAVLLIKKEFDAWQPAGHT 303 (445)
T ss_pred HHHHHHHHCCCEEEEECCCCCCC-------CCCCCEEECCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99998742784799822345701-------255511002478-9867689830338885068887763430456889866
Q ss_pred --------CHHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf --------1678999999997---------24688899998899882966121100136877899999999998775316
Q gi|254781107|r 377 --------GIWSILFWLNILA---------VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI 439 (542)
Q Consensus 377 --------gi~aal~~le~la---------~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (542)
++.+....|+++. .+++.+...|++|.++|+..---| +.+-+|.-++.-.....
T Consensus 304 GTFRGN~lA~~TG~~~L~~~kd~~L~~N~QE~~E~~t~~L~~~~K~~P~~~~VR---------kGRGlM~Gi~~~~E~~~ 374 (445)
T TIGR00709 304 GTFRGNQLAMVTGLEALNIIKDDNLAQNAQERGERITSFLDDLIKEYPCIGNVR---------KGRGLMIGIEIVDERKS 374 (445)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------CCCCEEECCCCCCCCCC
T ss_conf 554301578888899999888766765554446789999999987378547620---------56633541321025774
Q ss_pred CCCCCCCEEHHHHHHHCCCCCCCCCC-CCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 52115642010000000113467737-46708999889919999758888785589999995
Q gi|254781107|r 440 GSSFIGQKIKQAGDFVYTDSTNGNVS-DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDN 500 (542)
Q Consensus 440 ~~~~~~~~v~~~~d~~~~~~~~~~i~-~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~ 500 (542)
.+.+...+-. .... .++ +-.|+++ +++-..|.|-. ++|+.+-.
T Consensus 375 ~D~~G~~P~D------------~~LA~~I~--~~CF~~~--LllE~~G~~~~--V~~ll~p~ 418 (445)
T TIGR00709 375 KDAIGAYPAD------------SELAAAIQ--GACFENG--LLLEKGGREGE--VVRLLCPI 418 (445)
T ss_pred CCCCCCCCCH------------HHHHHHHH--HHHHCCC--CEEEECCCCCC--EEEEECCE
T ss_conf 2224788621------------48999998--6322057--33430689973--68970660
No 133
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein; InterPro: IPR008865 This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replication terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork .; GO: 0003677 DNA binding, 0006274 DNA replication termination, 0005737 cytoplasm.
Probab=24.31 E-value=39 Score=13.36 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 4688899998899882966121100136877899999999998775316
Q gi|254781107|r 391 RGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI 439 (542)
Q Consensus 391 ~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (542)
.+.|-.++|..|.+-|-. .| ....-..+.+.+.++.-+.....++
T Consensus 170 ~n~tr~~~L~~LeKSlns---~r-~vapytreqW~~~v~~E~~dv~~LP 214 (300)
T TIGR02648 170 KNVTRDEILEQLEKSLNS---GR-AVAPYTREQWQELVEKEIDDVKKLP 214 (300)
T ss_pred HCCCHHHHHHHHHHHHHC---CC-CCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 115778999997665405---67-8987677899999999999997451
No 134
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=24.24 E-value=27 Score=14.35 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=6.8
Q ss_pred CCCHHHHHHHH
Q ss_conf 75167899999
Q gi|254781107|r 375 KDGIWSILFWL 385 (542)
Q Consensus 375 kDgi~aal~~l 385 (542)
||+++++..++
T Consensus 414 rDAl~aAAeli 424 (590)
T PRK13590 414 RDAATAVAELA 424 (590)
T ss_pred CCHHHHHHHHH
T ss_conf 23999999999
No 135
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=24.15 E-value=28 Score=14.30 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCEEEECCCCC--CCCHHHHHH
Q ss_conf 9999999999789879996789806507999999850-8981799957657989887773587368786--578679889
Q gi|254781107|r 65 VIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-KASGGIILTASHNPAGATQDFGIKYNTSSGG--SASEQQTED 141 (542)
Q Consensus 65 ~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~-~~~~GImITASHNP~eyN~dnGiK~~~~~G~--~~~~~~~~~ 141 (542)
+...+.+++...|..-+ -||++-|+-.-. +...|=.|. ++ =|+|.+.+|. -+.|+.|..
T Consensus 24 i~~~~~~~~~~~Gy~~I--------~tP~~E~~elf~~~~g~~~~i~-----ke-----my~f~D~~gr~l~LRPe~Ta~ 85 (421)
T PRK12420 24 IKRACEDTFERYGCKPL--------ETPTLNMYELMSYKYGGGDEIL-----KE-----IYTLQDQGKRDLALRYDLTIP 85 (421)
T ss_pred HHHHHHHHHHHCCCEEE--------ECCCCCHHHHHCCCCCCCCHHH-----HH-----EEEEECCCCCEEEECCCCCHH
T ss_conf 99999999998599472--------4765011876424478844224-----11-----078881899879856776589
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781107|r 142 IFEES 146 (542)
Q Consensus 142 I~~~~ 146 (542)
|...+
T Consensus 86 iaR~~ 90 (421)
T PRK12420 86 FAKVV 90 (421)
T ss_pred HHHHH
T ss_conf 99999
No 136
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=23.89 E-value=16 Score=15.85 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99998404761599828632665421026973886211230134742157516789999999972468889999889988
Q gi|254781107|r 326 ALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWAT 405 (542)
Q Consensus 326 ~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la~~gk~l~d~l~el~~~ 405 (542)
.+++|++|.|-+-.+| +...+.+.+--+..|-+ |=+|-.+ =+|+.+|.++.|++.++..+
T Consensus 28 G~~ki~kKvGEEa~E~------~iAa~~~d~e~l~~E~A-----------DLlYH~l---VlL~~~gv~l~dV~~eL~~R 87 (92)
T COG0140 28 GIDKIAKKVGEEAVEV------ILAAKDEDKEELVSEAA-----------DLLYHLL---VLLAAQGLSLEDVLRELERR 87 (92)
T ss_pred CHHHHHHHHHHHHHHH------HHHHHHCCHHHHHHHHH-----------HHHHHHH---HHHHHCCCCHHHHHHHHHHH
T ss_conf 6899999982799999------99998266499999999-----------9999999---99997699999999999998
Q ss_pred HC
Q ss_conf 29
Q gi|254781107|r 406 YG 407 (542)
Q Consensus 406 yG 407 (542)
.+
T Consensus 88 ~~ 89 (92)
T COG0140 88 HG 89 (92)
T ss_pred HH
T ss_conf 66
No 137
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.81 E-value=31 Score=14.05 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=10.0
Q ss_pred EECCCCHH----HHHHHHCCCCEEEECC
Q ss_conf 98286326----6542102697388621
Q gi|254781107|r 339 FETPTGWK----FFNNLLENGMITICGE 362 (542)
Q Consensus 339 ~~t~vGfk----~I~~~m~~~~~~~ggE 362 (542)
+++|-|-+ -|+.++++.++.+--|
T Consensus 65 vEVPsGVRGRmaliGPLIEeadAAIi~~ 92 (152)
T COG4050 65 VEVPSGVRGRMALIGPLIEEADAAIIVE 92 (152)
T ss_pred EECCCCCCCEEEEEEHHHHHCCEEEEEC
T ss_conf 7658776322221101232124026851
No 138
>PRK02866 cyanate hydratase; Validated
Probab=23.74 E-value=44 Score=13.02 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=12.2
Q ss_pred EEEEEECCCCCEEEEECCCCCC
Q ss_conf 0789864887456885388722
Q gi|254781107|r 270 DFGAACDGDGDRSMILGKGIFV 291 (542)
Q Consensus 270 DlgiA~DgDaDR~~ivd~g~~i 291 (542)
|+--.-||+|||+.|.=+|+|+
T Consensus 121 ~v~k~~dp~GdRVvit~~GKfL 142 (147)
T PRK02866 121 DVDKVEDPKGDRVVITLDGKFL 142 (147)
T ss_pred EEEEECCCCCCEEEEEECCEEC
T ss_conf 3464018999879998647005
No 139
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=23.72 E-value=44 Score=13.02 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q gi|254781107|r 506 SKHLKNTQEMLSDLVE 521 (542)
Q Consensus 506 ~~~l~~~~~~l~~li~ 521 (542)
++.++++++..+++.+
T Consensus 376 ee~l~~~~e~G~~~A~ 391 (395)
T PRK11921 376 DEALDRCRSFGENFAE 391 (395)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 140
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=23.65 E-value=44 Score=13.01 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCCEEEE--EECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7846998--503554401221112310585012332015787547644685422210478886122586078986488
Q gi|254781107|r 203 FGFRIDI--DCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGD 278 (542)
Q Consensus 203 ~~l~Ivv--D~~nGa~~~~~~~il~~~lg~~~~~~~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgD 278 (542)
.+++|++ |..|.++...+ ..+ ..+|..+.. +.|.+ ..|++ ...+.+.+.+.+.+..+-+-.|++
T Consensus 155 ~~lkia~vGD~~nnv~~Sl~-~~~-~~~g~~~~~---~~P~~----~~p~~---~~~~~~~~~~~~~g~~i~~~~d~~ 220 (334)
T PRK03515 155 NEMTLAYAGDARNNMGNSLL-EAA-ALTGLDLRL---VAPKA----CWPEA---ALVTECQALAQKNGGNITLTEDIA 220 (334)
T ss_pred CCEEEEEECCCCCCHHHHHH-HHH-HHCCCEEEE---ECCCC----CCCCH---HHHHHHHHHHHHHCCCEEEECCHH
T ss_conf 66489995787654589999-999-854974999---77975----68887---899999999997199189960456
No 141
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=23.25 E-value=45 Score=12.96 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=40.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH-HHHHHHHCCCEEEEEECCCCCC
Q ss_conf 838999647678689999999999978987999678980650799-9999850898179995765798
Q gi|254781107|r 50 KTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV-SHLIRKYKASGGIILTASHNPA 116 (542)
Q Consensus 50 ~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~-~~av~~~~~~~GImITASHNP~ 116 (542)
.+|++-.|.+++. .++..+..++..|++++++.-.++.|.+.+ ..+.......+|+.++-+|+|.
T Consensus 3 ~~i~~vGD~~~~r--v~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 68 (155)
T pfam00185 3 LKVAIVGDGKHNR--VAHSLILALAKFGMEVVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLE 68 (155)
T ss_pred CEEEEECCCCCCH--HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 8999983787274--99999999998499899987852388889999999998862897499984999
No 142
>TIGR00500 met_pdase_I methionine aminopeptidase, type I; InterPro: IPR002467 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A. Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002468 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=22.78 E-value=46 Score=12.90 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCEEEEEEC---CCCCEEEEECC-CCCCCCHHHHHHHHHHH--HHCC-CCCCCCCEEEEECCCHHHHHHHHCCCCEEEE
Q ss_conf 5860789864---88745688538-87227465999999999--8720-2047871687531083799998404761599
Q gi|254781107|r 267 DSADFGAACD---GDGDRSMILGK-GIFVNPSDSLAIMVANA--GLIP-GYATGLVGVARSMPTSAALDRVAEKLNLKLF 339 (542)
Q Consensus 267 ~~aDlgiA~D---gDaDR~~ivd~-g~~i~~~d~l~ll~~~~--~~~~-~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~ 339 (542)
-+.|+|+-+| ||.-+-.++++ .-.- .+-|.-..... ..+. ..+.|.. +..+ |.+|++.+++.|+.++
T Consensus 101 vniD~g~~~~Gy~gD~a~Tf~~G~n~~~~--~~KLl~~t~esl~~aI~P~~kpG~~--~~~i--g~AI~~~~~~~GF~vv 174 (265)
T TIGR00500 101 VNIDVGVIYDGYYGDTAITFLVGKNVSPE--AEKLLEATEESLYKAIEPEIKPGKR--IGEI--GKAIEKYAEEKGFSVV 174 (265)
T ss_pred EEEEEEEEECCEEECCCCEEEECCCCCHH--HHHHHHHHHHHHHHCCCCCCCCCCC--HHHH--HHHHHHHHHHCCCEEE
T ss_conf 87557788603021132313413877876--7889999999998522310147988--7789--9999999876299786
Q ss_pred ECCCCHHHHHHHHCC
Q ss_conf 828632665421026
Q gi|254781107|r 340 ETPTGWKFFNNLLEN 354 (542)
Q Consensus 340 ~t~vGfk~I~~~m~~ 354 (542)
|+-+||= |++.+.+
T Consensus 175 r~y~GHG-iG~~~He 188 (265)
T TIGR00500 175 REYCGHG-IGRKLHE 188 (265)
T ss_pred ECCCCCC-CCCCCCC
T ss_conf 1452764-3774455
No 143
>TIGR02638 lactal_redase lactaldehyde reductase; InterPro: IPR013460 The proteins in this entry form a distinct clade of iron-containing alcohol dehydrogenases. The genes encoding these proteins are generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in the production of lactaldehydes, which are reduced by these enzymes to 1,2 propanediol . These enzymes are also sometimes called 1,2 propanediol oxidoreductases. They are active under anaerobic conditions in E. coli, while being inactivated by reactive oxygen species under aerobic conditions . Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase..
Probab=22.29 E-value=47 Score=12.83 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=31.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
Q ss_conf 3899964767868999999999997898799967898065079999
Q gi|254781107|r 51 TLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSH 96 (542)
Q Consensus 51 ~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~ 96 (542)
+-+|--|-..=---.+..+.+.|-.+.+.=-+| +++.|=|.+..
T Consensus 31 KAlvvTDk~Li~~gv~~~v~~~Ld~~~~~Y~lf--d~v~pNPT~~~ 74 (380)
T TIGR02638 31 KALVVTDKDLIKFGVADKVTELLDEAKIAYELF--DEVKPNPTITV 74 (380)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHH--CCCCCCCCHHH
T ss_conf 138886614676657999999986227883462--57788975899
No 144
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.14 E-value=39 Score=13.34 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCC--CCCHHHH
Q ss_conf 68999999999997898799967898065079999998508981799957657989887773587368786--5786798
Q gi|254781107|r 62 NHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGG--SASEQQT 139 (542)
Q Consensus 62 S~~~a~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~--~~~~~~~ 139 (542)
++.+...+.++|.+.|..-+ -||.+-|+=.-+... |--+.. .=|+|.+++|. -+.|+.|
T Consensus 7 ~~~~~~~i~~~f~~~Gy~~I--------~tP~lE~~d~~~~~~-Ge~~~~----------~~y~f~D~~g~~l~LRpDlT 67 (373)
T PRK12295 7 SAALAEALLASFEAAGAVRV--------DPPILQPAEPFLDLS-GEDIRR----------RIFVTSDENGEELCLRPDFT 67 (373)
T ss_pred HHHHHHHHHHHHHHCCCEEE--------CCCCCCCHHHHCCCC-CCHHHE----------EEEEEECCCCCEEEEECCCC
T ss_conf 99999999999998699685--------687604177641435-633110----------04889989989899817888
Q ss_pred HHHHH
Q ss_conf 89999
Q gi|254781107|r 140 EDIFE 144 (542)
Q Consensus 140 ~~I~~ 144 (542)
..|..
T Consensus 68 ~piaR 72 (373)
T PRK12295 68 IPVCR 72 (373)
T ss_pred HHHHH
T ss_conf 99999
No 145
>KOG1199 consensus
Probab=21.84 E-value=41 Score=13.20 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=13.0
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999999789879996
Q gi|254781107|r 66 IQKIIKIAAANGFARIII 83 (542)
Q Consensus 66 a~~~a~~l~~~Gi~V~~~ 83 (542)
-+..++.|+.+|..|.+.
T Consensus 22 g~ataerlakqgasv~ll 39 (260)
T KOG1199 22 GKATAERLAKQGASVALL 39 (260)
T ss_pred CHHHHHHHHHCCCEEEEE
T ss_conf 277899998468607987
No 146
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=21.69 E-value=48 Score=12.76 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=31.5
Q ss_pred EECCCCCHHHHH---HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 964767868999---9999999978987999678980650799999985-08981799957657989887773587
Q gi|254781107|r 55 GGDGRFYNHIVI---QKIIKIAAANGFARIIIGKGGILSTPAVSHLIRK-YKASGGIILTASHNPAGATQDFGIKY 126 (542)
Q Consensus 55 G~D~R~~S~~~a---~~~a~~l~~~Gi~V~~~~~~gi~PTP~~~~av~~-~~~~~GImITASHNP~eyN~dnGiK~ 126 (542)
|.-....|++.. .++.+-+...|+.|.. +..| --|+.+. ...+.-.++++||==--+| |=||
T Consensus 26 G~tR~~~s~~~~~a~~~~~~~~~~~Gl~v~~-D~~G------Nl~~~~~G~~~~~p~i~~GSHlDTVp~---GG~y 91 (412)
T PRK09290 26 GVTRLALSPEDLQARDLFAKWMEAAGLTVRV-DAVG------NLFGRLEGRDPDAPAVLTGSHLDTVPN---GGRF 91 (412)
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHCCCEEEE-ECCC------CEEEEECCCCCCCCEEEECCCCCCCCC---CCCC
T ss_conf 6551649999999999999999986997898-2788------889993588889881787664354658---9765
No 147
>KOG4287 consensus
Probab=21.67 E-value=48 Score=12.76 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=22.4
Q ss_pred EEE-EECCCCCCCCCCCCCEEEECCCCCCCCH
Q ss_conf 799-9576579898877735873687865786
Q gi|254781107|r 106 GII-LTASHNPAGATQDFGIKYNTSSGGSASE 136 (542)
Q Consensus 106 GIm-ITASHNP~eyN~dnGiK~~~~~G~~~~~ 136 (542)
||. =-+|-||--|| ||=+|+-.=+|+....
T Consensus 112 GILS~k~~eNPdF~N-WNrVkvRYCDGasFsG 142 (402)
T KOG4287 112 GILSNKPSENPDFYN-WNRVKVRYCDGASFSG 142 (402)
T ss_pred EEECCCCCCCCCCCC-CCEEEEEECCCCCCCC
T ss_conf 774588555876333-3026875148876468
No 148
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.50 E-value=45 Score=12.94 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCEEEEEECCCCCEEE---EECCCCCCCCHHHHHHHH
Q ss_conf 7888612258607898648874568---853887227465999999
Q gi|254781107|r 259 LYDRMMMHDSADFGAACDGDGDRSM---ILGKGIFVNPSDSLAIMV 301 (542)
Q Consensus 259 l~~~~~~~~~aDlgiA~DgDaDR~~---ivd~g~~i~~~d~l~ll~ 301 (542)
++..+....++|+||.+-.---|.+ +.++...+...|..+-|.
T Consensus 90 MAr~vre~t~adigIGtTAGiGRGaIci~~~n~~~l~~sDV~AnL~ 135 (165)
T COG4016 90 MARGVREKTNADIGIGTTAGIGRGAICILTDNNRYLFTSDVYANLI 135 (165)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECHHHHHHC
T ss_conf 9999998737870544344547741799638833877520455543
No 149
>KOG3033 consensus
Probab=21.47 E-value=49 Score=12.73 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=11.2
Q ss_pred EEEEECCCE-EEEEECCCC
Q ss_conf 899988991-999975888
Q gi|254781107|r 470 IRVVFDNHS-RIIYRISGT 487 (542)
Q Consensus 470 ik~~~~d~~-wiliRpSGT 487 (542)
+|+.++++. |+++|..-+
T Consensus 259 ~rv~l~~ea~rV~l~G~av 277 (286)
T KOG3033 259 FRVSLKKEAQRVILNGGAV 277 (286)
T ss_pred EEEEECCCCEEEEECCCCE
T ss_conf 9999847760899549818
No 150
>KOG0061 consensus
Probab=21.03 E-value=50 Score=12.67 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=6.9
Q ss_pred CEEEEEECCCCCHH
Q ss_conf 46998503554401
Q gi|254781107|r 205 FRIDIDCMNAVTGP 218 (542)
Q Consensus 205 l~IvvD~~nGa~~~ 218 (542)
-++|+-.-|--+..
T Consensus 220 grtVi~tIHQPss~ 233 (613)
T KOG0061 220 GRTVICTIHQPSSE 233 (613)
T ss_pred CCEEEEEEECCCHH
T ss_conf 99899997687289
No 151
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=20.97 E-value=50 Score=12.66 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECC---CCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCC-HHHHHHHHHHCCCEEEEEE
Q ss_conf 9999997546548838999647---678689999999999978--987999678980650-7999999850898179995
Q gi|254781107|r 37 FIQAIFNNVDCAEKTLVVGGDG---RFYNHIVIQKIIKIAAAN--GFARIIIGKGGILST-PAVSHLIRKYKASGGIILT 110 (542)
Q Consensus 37 ~~~ai~~~~~~~~~~VvIG~D~---R~~S~~~a~~~a~~l~~~--Gi~V~~~~~~gi~PT-P~~~~av~~~~~~~GImIT 110 (542)
.++++.++.+..+.||+|..-. ++.+-.++...+..+++. .+.|.+--|.| .+ ..+-.++ ..+.+ .||+-
T Consensus 29 ~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~a~VPValHLDH~--~~~e~~~~ai-~~GFs-SVM~D 104 (307)
T PRK05835 29 MLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHG--TTFESCEKAV-KAGFT-SVMID 104 (307)
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHH-HCCCC-EEEEC
T ss_conf 99999999999789989995733776679899999999999866999989989999--9999999999-81998-79951
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 765798988777358736878657867988999999740
Q gi|254781107|r 111 ASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKI 149 (542)
Q Consensus 111 ASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~ 149 (542)
+||-|-+.| -..++++.+.+...
T Consensus 105 gS~l~~eeN----------------I~~tk~vve~ah~~ 127 (307)
T PRK05835 105 ASHHAFEEN----------------LELTSKVVKMAHNA 127 (307)
T ss_pred CCCCCHHHH----------------HHHHHHHHHHHHHC
T ss_conf 998999999----------------99999999999870
No 152
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=20.95 E-value=50 Score=12.66 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCCCC-CCCCHHHHHHHCCCCCEEEEEECCC-----CCEEEEECCCCCCC
Q ss_conf 68542-2210478886122586078986488-----74568853887227
Q gi|254781107|r 249 PDPNL-IHAKDLYDRMMMHDSADFGAACDGD-----GDRSMILGKGIFVN 292 (542)
Q Consensus 249 PnP~~-~~~~~l~~~~~~~~~aDlgiA~DgD-----aDR~~ivd~g~~i~ 292 (542)
-||.. ...+++..++.++...=+.+.||-| +||+.+..+|..+-
T Consensus 171 LD~~~~~~i~~ll~~l~~~g~tvl~vtHdl~~~~~~aDrv~vl~~G~iv~ 220 (257)
T PRK13548 171 LDLAHQHHVLRLARQLAERGAAVIVVLHDLNLAARYADRIVLLHQGRLVA 220 (257)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 89999999999999998559999999278899999799999998999999
No 153
>KOG2882 consensus
Probab=20.74 E-value=51 Score=12.63 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHCCCCEEEEECC
Q ss_conf 1083799998404761599828
Q gi|254781107|r 321 MPTSAALDRVAEKLNLKLFETP 342 (542)
Q Consensus 321 ~~sS~~i~~ia~~~g~~~~~t~ 342 (542)
-++..+.+.+.+++++..-||.
T Consensus 224 KP~~~m~~~l~~~~~i~psRt~ 245 (306)
T KOG2882 224 KPSTFMFEYLLEKFNIDPSRTC 245 (306)
T ss_pred CCCHHHHHHHHHHCCCCCCEEE
T ss_conf 9888999999997188953388
No 154
>pfam02502 LacAB_rpiB Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Probab=20.72 E-value=51 Score=12.63 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=8.2
Q ss_pred HHCCCCCEEEEEECCCC
Q ss_conf 61225860789864887
Q gi|254781107|r 263 MMMHDSADFGAACDGDG 279 (542)
Q Consensus 263 ~~~~~~aDlgiA~DgDa 279 (542)
.+.+..+|.||.+.|=|
T Consensus 51 ~v~~~~~~~GIliCgsG 67 (140)
T pfam02502 51 AVASGEADRGILICGTG 67 (140)
T ss_pred HHHCCCCEEEEEECCCC
T ss_conf 98458841689984787
No 155
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=20.23 E-value=52 Score=12.56 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=26.8
Q ss_pred EEEEEE-CCCCCHHHHHHHHHHHCCCEEEEEE---ECCCCC-----CCCCCCCCCC
Q ss_conf 699850-3554401221112310585012332---015787-----5476446854
Q gi|254781107|r 206 RIDIDC-MNAVTGPYAKEILERKLGAPTGSVR---NFIPLE-----DFGGCHPDPN 252 (542)
Q Consensus 206 ~IvvD~-~nGa~~~~~~~il~~~lg~~~~~~~---~~~pd~-----~F~~~~PnP~ 252 (542)
=+|+-+ =||++..+++.+++ .|++++-+. ++. |. ..+. |+.|+
T Consensus 76 DvVFlAlPhgvs~~~~p~~l~--~g~~ViDLSADFRl~-d~~~Ye~wYG~-h~~~~ 127 (361)
T TIGR01850 76 DVVFLALPHGVSMELAPELLE--AGVKVIDLSADFRLK-DPEVYEKWYGF-HAAPE 127 (361)
T ss_pred CEEEECCCHHHHHHHHHHHHH--CCCEEEECCCCCCCC-CHHHHHHHCCC-CCCHH
T ss_conf 789986872556999999984--798699888343369-97999996677-88966
No 156
>pfam02329 HDC Histidine carboxylase PI chain. Histidine carboxylase catalyses the formation of histamine from histidine. Cleavage of the proenzyme PI chain yields two subunits, alpha and beta, which arrange as a hexamer (alpha beta)6.
Probab=20.06 E-value=30 Score=14.06 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=36.9
Q ss_pred EEEEEECCCCCEEEEECCCCCCC---CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 07898648874568853887227---465999999999872020478716875310837999984047615998286326
Q gi|254781107|r 270 DFGAACDGDGDRSMILGKGIFVN---PSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWK 346 (542)
Q Consensus 270 DlgiA~DgDaDR~~ivd~g~~i~---~~d~l~ll~~~~~~~~~~~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk 346 (542)
-|.|+-|.+-|-.++++.-+.+. +++. -+.+|+..+++ .|+.|++ .-.+..++.+.|+-+|||
T Consensus 184 aisi~~dr~~~a~lfiEDaG~w~~~~~ne~--el~~~L~~~rk------~v~~Si~------~CG~Dq~v~y~~~~ig~a 249 (306)
T pfam02329 184 ALAILKDRTKGSSLFVEDAGVWGDENPTEE--ELKEFLEGRLR------KVTKSIA------LCGQDQHVSYERIYIGYK 249 (306)
T ss_pred EEEECCCCCCCCCEEEEECCCCCCCCCCHH--HHHHHHHHHHH------HHHHHHH------HHCCCCCEEEEEEEEEEE
T ss_conf 850211777675014430552057799748--99999999999------9999999------865776705788787778
Q ss_pred HHH
Q ss_conf 654
Q gi|254781107|r 347 FFN 349 (542)
Q Consensus 347 ~I~ 349 (542)
|..
T Consensus 250 y~~ 252 (306)
T pfam02329 250 YTM 252 (306)
T ss_pred EEE
T ss_conf 997
Done!