HHsearch results for GI: 254781107 and protein with PDBid: 3pmg_A

Probab=100.00  E-value=0  Score=857.42  Aligned_cols=538  Identities=52%  Similarity=0.901  Sum_probs=460.6

Q ss_pred             EEEECCCCCCCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHCCC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf             3520787678888767420450544-4178999999999975465---48838999647678689999999999978987
Q gi|254781107|r    4 TIVPTVPYQDQKPGTSGLRKKVSVF-QQNSYTENFIQAIFNNVDC---AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFA   79 (542)
Q Consensus         4 ~~~~~~~~~~l~FGT~GiRG~~~~~-~~~~~~~~~~~ai~~~~~~---~~~~VvIG~D~R~~S~~~a~~~a~~l~~~Gi~   79 (542)
                      ..+++..|++||||||||||+++.+ .++.++.+++++++..+..   .+++|+||||+|++|++|+++++++|+++|++
T Consensus         4 ~~~~~~~~~~~~fGT~GiRG~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~VvIg~D~R~~S~~~a~~~a~~l~s~Gi~   83 (561)
T 3pmg_A            4 VTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIG   83 (561)
T ss_dssp             EEEECCCCSCCCCBTTBEEEEHHHHHHSTTHHHHHHHHHHHTSCGGGTTTCEEEEEECCCTTHHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             78478656889995876786158888897999999999999998733799879999789614899999999999987997


Q ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99967898065079999998508981799957657989887773587368786578679889999997405000134446
Q gi|254781107|r   80 RIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEAND  159 (542)
Q Consensus        80 V~~~~~~gi~PTP~~~~av~~~~~~~GImITASHNP~eyN~dnGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~  159 (542)
                      |+++...|++|||+++|+++++++++||||||||||++||.|||+|||+++|+|+.++.+++|++.++.+......+...
T Consensus        84 V~~~~~~g~~pTP~l~~av~~~~a~~GImITASHNP~~yn~~nGiK~~~~~G~~~~~~~~~~I~~~~~~~~~~~~~~~~~  163 (561)
T 3pmg_A           84 RLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLK  163 (561)
T ss_dssp             EEEEEEEEECCHHHHHHHHHHHTCSEEEEECCTTSCCSTTSEEEEEEEETTSSBCCHHHHHHHHHHHHHCCEEEECTTCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99958889758589999998649986899976689986676506995376776377778999999997334430366444


Q ss_pred             CCHHHCCH------HCCCCCEEEEEEECHHHHHHHHHCCCCHHHHCC--CCCCCEEEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf             87121031------002575058984022267543320780322001--3378469985035544012211123105850
Q gi|254781107|r  160 VDINHIGT------KELANMTISVIDPIENYVALMENIFDFDAIRKL--LSFGFRIDIDCMNAVTGPYAKEILERKLGAP  231 (542)
Q Consensus       160 ~~~~~~~~------~~~~~~~~~~~d~~~~Y~~~l~~~~d~~~i~~~--~~~~l~IvvD~~nGa~~~~~~~il~~~lg~~  231 (542)
                      .++...+.      .......++..|..+.|.+++.+.++++.++..  ...+++|++||+||+++.+++++|.+.+|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~~~~~~~~~~~~~~~~lkIv~D~~nG~~~~~~~~iL~~~lg~~  243 (561)
T 3pmg_A          164 VDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAP  243 (561)
T ss_dssp             CCTTSCEEEEECCTTCSSCEEEEEECSSHHHHHHHHTTSCHHHHHHHHHSTTCCCEEEECTTSTTHHHHHHHHTTTTCCC
T ss_pred             CCCCCCCCCCCCHHHCCCCCEEEEECHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             44000253013444404676079823099999999863487777776414678469995477611333365538761884


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             12332015787547644685422210478886122586078986488745688538-87227465999999999872020
Q gi|254781107|r  232 TGSVRNFIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGY  310 (542)
Q Consensus       232 ~~~~~~~~pd~~F~~~~PnP~~~~~~~l~~~~~~~~~aDlgiA~DgDaDR~~ivd~-g~~i~~~d~l~ll~~~~~~~~~~  310 (542)
                      +....|+.||++||+++|||+.+++.++. +.+++.++|+|+|+||||||++++|+ |.++.+++++++++.+++.....
T Consensus       244 ~~~~~~~~~d~~f~~~~p~p~~~~~~~l~-~~v~~~~aDlgia~DgDaDR~~ivd~~G~~i~~~~~~all~~~~l~~~~~  322 (561)
T 3pmg_A          244 ANSAVNCVPLEDFGGHHPDPNLTYAADLV-ETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYF  322 (561)
T ss_dssp             GGGEESCSCCTTGGGSCCCCSTTTTHHHH-HHHHTSCCSEEEEECTTSSCEEEEEGGGCBCCHHHHHHHHHHTGGGSHHH
T ss_pred             CEEEEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf             20467645569988677899822499999-98860176445420588856899968972871651799999999973353


Q ss_pred             -CCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             -4787168753108379999840476159982863266542102697388621123013474215751678999999997
Q gi|254781107|r  311 -ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSNHSREKDGIWSILFWLNILA  389 (542)
Q Consensus       311 -~~~~~~vv~t~~sS~~i~~ia~~~g~~~~~t~vGfk~I~~~m~~~~~~~ggEeS~G~~~~~~~dkDgi~aal~~le~la  389 (542)
                       ......||+|++||.+++++++++|+++++|+||||||++.|.+.++.||||||+|++++|+++|||++++++++++++
T Consensus       323 ~~~~~~~vv~t~~ss~~i~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~ggEesgg~~~~~~~~kDgi~a~l~~le~l~  402 (561)
T 3pmg_A          323 QQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILA  402 (561)
T ss_dssp             HHHCCCCEEEETTSCTHHHHHHHTSSSCEEEECSSHHHHHHHHHTTCCSEEEETTTEEEETTSSSCCHHHHHHHHHHHHH
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             14887469866665807777898659369871774699999998459779885257262156899838999999999999


Q ss_pred             HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH--CCCCCCCC----CEEHHHHHHHCCCCCCCC
Q ss_conf             246888999988998829661211001368778999999999987753--16521156----420100000001134677
Q gi|254781107|r  390 VRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKN--LIGSSFIG----QKIKQAGDFVYTDSTNGN  463 (542)
Q Consensus       390 ~~gk~l~d~l~el~~~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~----~~v~~~~d~~~~~~~~~~  463 (542)
                      .++++|++++++++++||++++.+.+....+.+....++..++..+.+  ..+..+..    .++....++.+.+..+++
T Consensus       403 ~~~k~l~~~l~el~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  482 (561)
T 3pmg_A          403 TRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGS  482 (561)
T ss_dssp             HHCSCHHHHHHHHHHHHCEEEEEEEEEEEECHHHHHHHHHHHHHHHHSTTSTTCEEEETTEEEEEEEEEECCEECTTTCC
T ss_pred             HHCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             83989999999888883875466314456778889999999998652133236400245431567651233345754576


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             3746708999889919999758888785589999995289978999999999999999999985066883789997579
Q gi|254781107|r  464 VSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSIAS  542 (542)
Q Consensus       464 i~~~dGik~~~~d~~wiliRpSGTEPk~~~iRiy~E~~~~~~~~~l~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~  542 (542)
                      ++++||+|+.|+||+|+++|||||||..++||||+|+++++.++.+.+.++.++++++.++++.++++++|+++|||+|
T Consensus       483 i~~~dglk~~~~dg~wi~vRpSGTEP~~~~iRiY~Ea~~~d~a~~~~~~~~~l~~~i~~~~~~~~~~~~~g~~~~~~~~  561 (561)
T 3pmg_A          483 VSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT  561 (561)
T ss_dssp             EECCCCEEEEETTSCEEEEEEEECSSSCEEEEEEEEEEECCTTTTTSCHHHHHHHHHHHHHHHHTHHHHHCCSSCSEEC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf             6677759999779859999856788998129999987795588898999999999999999985868886889998619