RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] (542 letters) >gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 548 Score = 853 bits (2206), Expect = 0.0 Identities = 309/547 (56%), Positives = 399/547 (72%), Gaps = 11/547 (2%) Query: 4 TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD---CAEKTLVVGGDGRF 60 VPT PY+ QKPGTSGLRKKV VFQQ +Y ENF+Q+IFN + TLVVGGDGR+ Sbjct: 1 QTVPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRY 60 Query: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120 YN IQ IIKIAAANG ++++G+ G+LSTPAVS +IRK KA+GGIILTASHNP G Sbjct: 61 YNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEG 120 Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKEL--ANMTISVI 178 DFGIKYNTS+GG A E T+ I+E +KKIT Y+I + DVD++ IG + T+ VI Sbjct: 121 DFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKFGGKPFTVEVI 180 Query: 179 DPIENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237 D +E+YV LM+ IFDFDAI+KLLS GF++ D M+ VTGPYAK+I +LGAP SV N Sbjct: 181 DSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVN 240 Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSL 297 PL DFGG HPDPNL +AKDL + M + DFGAA DGDGDR+MILGKG FV PSDS+ Sbjct: 241 CTPLPDFGGGHPDPNLTYAKDLVELMKSGE-PDFGAASDGDGDRNMILGKGFFVTPSDSV 299 Query: 298 AIMVANAGLIPGY-ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGM 356 A++ ANA LIP + GL GVARSMPTS ALDRVA+KL + LFETPTGWKFF NL++ G Sbjct: 300 AVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK 359 Query: 357 ITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDY 416 +++CGEESFGTGS+H REKDG+W++L WL+ILA R S+ DIV +HW YGRN+Y+RYDY Sbjct: 360 LSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQKYGRNFYTRYDY 419 Query: 417 LGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---KIKQAGDFVYTDSTNGNVSDKQGIRVV 473 + +E A M+ R + +L G G K+ +A DF YTD +G+VS KQG+R++ Sbjct: 420 EEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRII 479 Query: 474 FDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYI 533 F++ SRII+R+SGT + +T+R+YI++YE D SK+ + Q L L+E++ ++S L+ + Sbjct: 480 FEDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALKLSKLKEFT 539 Query: 534 GHTNPSI 540 G P++ Sbjct: 540 GREEPTV 546 >gnl|CDD|35844 KOG0625, KOG0625, KOG0625, Phosphoglucomutase [Carbohydrate transport and metabolism]. Length = 558 Score = 675 bits (1742), Expect = 0.0 Identities = 299/555 (53%), Positives = 393/555 (70%), Gaps = 24/555 (4%) Query: 5 IVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEK---TLVVGGDGRFY 61 VPT PY+ QKPGTSGLRKKV VF+Q +YTENF+QAI N + + TLVVGGDGR+Y Sbjct: 7 TVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYY 66 Query: 62 NHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-KASGGIILTASHNPAGATQ 120 N IQ I KIAAANG R+I+G+ GILSTPAVS +IRKY KA GGIILTASHNP G Sbjct: 67 NKEAIQIIAKIAAANGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEG 126 Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTISVID 179 DFGIK+N +GG A E T+ I+E +K I+ Y+I + +D++ +G T T+ VID Sbjct: 127 DFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSFDGPFTVEVID 186 Query: 180 PIENYVALMENIFDFDAIRKLLSF--GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237 P+++YV LM+ IFDFD I+ LLS + D M+ VTGPY K I +LGAP S++N Sbjct: 187 PVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQN 246 Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDS 296 +PLEDFGG HPDPNL +AKDL DR+ DFGAA DGDGDR+MILGK G FV PSDS Sbjct: 247 CVPLEDFGGGHPDPNLTYAKDLVDRVD-RGEIDFGAAFDGDGDRNMILGKNGFFVTPSDS 305 Query: 297 LAIMVANAGLIPGYAT-GLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENG 355 +AI+ ANA IP + G+ G ARSMPTS ALDRVA+KL L ++E PTGWKFF NL++ G Sbjct: 306 VAIIAANAEAIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAG 365 Query: 356 MITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLL-DIVHKHWATYGRNYYSRY 414 ++ICGEESFGTGS+H REKDGIW++L WL+ILA ++++ DIV +HWA YGRN+++RY Sbjct: 366 KLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHNKQNVVEDIVKEHWAKYGRNFFTRY 425 Query: 415 DYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---------KIKQAGDFVYTDSTNGNVS 465 DY + E A M D L+ L+ SF+G+ K+ +A DF YTD +G+VS Sbjct: 426 DYEEVEAEGANKMMED----LEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVS 481 Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQR 525 KQG+R+VF++ SRI++R+SGT + +T+R+YI++YE D SK ++ Q L L++++ + Sbjct: 482 KKQGLRIVFEDGSRIVFRLSGTGSSGATIRLYIESYEKDVSKIDQDAQVALKPLIDIALK 541 Query: 526 ISCLRHYIGHTNPSI 540 IS L+ + G P++ Sbjct: 542 ISKLKEFTGREAPTV 556 >gnl|CDD|30382 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and metabolism]. Length = 524 Score = 522 bits (1347), Expect = e-149 Identities = 197/539 (36%), Positives = 277/539 (51%), Gaps = 42/539 (7%) Query: 6 VPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNVDCAEK--TLVVGGDGRFYN 62 PT PYQD K GTSG R VF N ++ FIQAI + LVVGGD + Sbjct: 8 DPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALS 67 Query: 63 HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIR----KYKA-SGGIILTASHNPAG 117 IQ +++ AANG I+ G+GG TPA SH I KYKA + GI+LT SHNP Sbjct: 68 EPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPP- 126 Query: 118 ATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTIS 176 +D GIKYN +GG A E+ T+ I + Y+I +D+ IG + ++T+ Sbjct: 127 --EDGGIKYNPPNGGPAPEKVTDAIEA--RANDLYKIG---LLDVKRIGLDQAYGSLTVK 179 Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236 +IDP+++YV L+E IFDFDAIRK G R+ D + VTGPY K I E+ L TG + Sbjct: 180 IIDPVKDYVELLEEIFDFDAIRK---AGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQ 236 Query: 237 NFIPLEDFGGCHPDPNLIHAK---DLYDRMM-MHDSADFGAACDGDGDRSMILGKG-IFV 291 N P DF G PD N+ ++ + D DF AA DGDGDR I+ G + Sbjct: 237 NVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLM 296 Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL 351 NP+ SLA+ + L Y G+V V +++ +SAA+DRV KL L+E P G+K+F + Sbjct: 297 NPNHSLAVAIEYLFLHRPYWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDG 356 Query: 352 LENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRG----ESLLDIVHKHWATYG 407 L+ G GEES G++ REK G+W+ NILA+ I +H+A G Sbjct: 357 LDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYAELG 414 Query: 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDK 467 RN+ R DY + E A RL+ L + Y GN + Sbjct: 415 RNFG-RPDYERVDAEAANAQKA----RLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAI 469 Query: 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRI 526 G++V +N R SGT+ +T ++Y +++E D +HLK Q+ +++V +I Sbjct: 470 GGLKVTTEN-GWFAARPSGTE---ATYKIYAESFEGD--EHLKQIQKEAAEIVSEVLKI 522 >gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.. Length = 461 Score = 224 bits (574), Expect = 4e-59 Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 60/457 (13%) Query: 48 AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGI 107 + +VVG D RF + + + ++ AANG + + + TPAVS ++K A+GG+ Sbjct: 38 GGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDR--PVPTPAVSWAVKKLGAAGGV 95 Query: 108 ILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGT 167 ++TASHNP + G+K + GGSA + T IEA G Sbjct: 96 MITASHNPP---EYNGVKVKPAFGGSALPEITAA-------------IEARLASGEPPGL 139 Query: 168 KELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERK 227 + A I IDP +Y+ + ++ D +AIR+ G ++ +D M Y +E+L R Sbjct: 140 EARAEGLIETIDPKPDYLEALRSLVDLEAIRE---AGLKVVVDPMYGAGAGYLEELL-RG 195 Query: 228 LGAPTGSVRNFI-PLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDR-SMIL 285 G +R PL FGG P+P + +L + + AD G A DGD DR + Sbjct: 196 AGVDVEEIRAERDPL--FGGIPPEPIEKNLGELAEA-VKEGGADLGLATDGDADRIGAVD 252 Query: 286 GKGIFVNPSDSLAIM----VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFET 341 KG F++P+ LA++ + N GL G V +++ T+ +DR+AEK L ++ET Sbjct: 253 EKGNFLDPNQILALLLDYLLENKGL-----RG--PVVKTVSTTHLIDRIAEKHGLPVYET 305 Query: 342 PTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVH 400 P G+K+ + + I GEES G G H E+DGI + L L +A G+ L ++V Sbjct: 306 PVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVA 365 Query: 401 KHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460 + YG +YY R D L + + + + +LKN S G K+ + Sbjct: 366 ELEEEYGPSYYDRID-LRLTPAQKEAILE----KLKNEPPLSIAGGKVDE---------- 410 Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVY 497 V+ G+++V ++ S ++ R SGT+ LR+Y Sbjct: 411 ---VNTIDGVKLVLEDGSWLLIRPSGTE---PLLRIY 441 >gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 355 Score = 202 bits (517), Expect = 1e-52 Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 44/346 (12%) Query: 84 GKGGILSTPAVSHLI-RKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDI 142 G G TP + + + ++GGI++TASHNP +D GIK+ G + ++ + I Sbjct: 9 GVVGDDITPETAVALGQAIGSTGGIMITASHNPP---EDNGIKFVDPDGEPIASEEEKAI 65 Query: 143 FEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLS 202 + E D + + ++ Y ++ +FD A+ Sbjct: 66 EDL---------AEKEDEPSAVAYELGGSVKAVDILQR---YFEALKKLFDVAALSN--- 110 Query: 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL-----EDFGGCHPDPNLIHAK 257 F++ +D +N V GP A ++L KLGA IPL +FG +PDP Sbjct: 111 KKFKVVVDSVNGVGGPIAPQLL-EKLGA------EVIPLNCEPDGNFGNINPDPG--SET 161 Query: 258 DLYDRMMMHD--SADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGL 314 +L + + ADFG A DGD DR +++ + G F++ + LA++ L Sbjct: 162 NLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN---PR 218 Query: 315 VGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSN-HSR 373 GV +++ +S ALD+VA+KL +K+ T TG+K+ ++ G + + GEES G Sbjct: 219 GGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHP 278 Query: 374 EKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGI 419 +DGI + L L ILA G+SL + ++ R YY R G Sbjct: 279 GRDGISAALLLLEILANLGKSL----SELFSELPRYYYIRLKVRGW 320 >gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism]. Length = 464 Score = 180 bits (458), Expect = 8e-46 Identities = 118/505 (23%), Positives = 206/505 (40%), Gaps = 68/505 (13%) Query: 17 GTSGLRKKVSVFQQNSYTENFIQAI---FNNV--DCAEKTLVVGGDGRFYNHIVIQKIIK 71 GT G+R T F + +V +VVG D R + ++ + Sbjct: 11 GTDGIRGVAG----EELTPEFALKLGRALGSVLRKKGAPKVVVGRDTRLSSEMLAAALAA 66 Query: 72 IAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG 131 + G +G ++ TPAV+ RK A G+++TASHNP + GIK+ S G Sbjct: 67 GLTSAGIDVYDLG---LVPTPAVAFATRKLGADAGVMITASHNPP---EYNGIKFFGSDG 120 Query: 132 GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENI 191 G S+ E+I + + + D ++ Y+ ++++ Sbjct: 121 GKISDDIEEEI-----------EAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSL 169 Query: 192 FDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDP 251 D D + G ++ +DC N G A +L ++LGA S+ N P F +P+P Sbjct: 170 VDVDLKLR----GLKVVVDCANGAAGLVAPRLL-KELGAEVVSI-NCDPDGLFPNINPNP 223 Query: 252 NLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAGLIPGY 310 DL + H AD G A DGD DR +++ +G FV+ D + ++A L G Sbjct: 224 GETELLDLAKAVKEHG-ADLGIAFDGDADRLIVVDERGNFVD-GDQILALLAKYLLEKGK 281 Query: 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-S 369 +V ++ +S AL+++A+KL K+ T G K+ + GEES Sbjct: 282 LPTVVT---TVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFP 338 Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429 +H R DG+ + L L +LA G+SL +++ + Y S + + E + + Sbjct: 339 DHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKY---PQSVEINVRVTDEGKAEVLE 395 Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489 L+ V G++V ++ R++ R SGT+ Sbjct: 396 KLLEELRE-----------------------AKKVDTIDGVKVELEDGGRVLVRPSGTEP 432 Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQE 514 +RVY++ + + ++ L Sbjct: 433 L---IRVYVEAKDEELAEELAEEIA 454 >gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 522 Score = 148 bits (376), Expect = 3e-36 Identities = 158/558 (28%), Positives = 235/558 (42%), Gaps = 93/558 (16%) Query: 7 PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFY----N 62 P+ P Q GTSG R S + S+ E I AI + C + G G + Sbjct: 14 PSNPAQRVAFGTSGHRG--SSLK-GSFNEAHILAISQAI-CDYRKSQ-GITGPLFLGKDT 68 Query: 63 HIVIQKIIKIA----AANGFARIIIGKGGILSTPAVSHLIRKYKASG------GIILTAS 112 H + + A AANG II G TP +SH I Y GI++T S Sbjct: 69 HALSEPAFISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPS 128 Query: 113 HNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE-LA 171 HNP +D G KYN GG A T I + + ++ + I + LA Sbjct: 129 HNPP---EDGGFKYNPPHGGPADTDITRWIEKRAN-----ALLANGLKGVKRIPLEAALA 180 Query: 172 NMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILER---KL 228 + D + YVA + N+ D DAIRK G R+ +D + + PY + I E+ L Sbjct: 181 SGYTHRHDFVTPYVADLGNVIDMDAIRKS---GLRLGVDPLGGASVPYWQPIAEKYGLNL 237 Query: 229 GAPTGSVRN---FIPLEDFGGCHPDP-------NLIHAKDLYDRMMMHDSADFGAACDGD 278 V F+ L+ G D L+ KD + D A D D Sbjct: 238 TVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKLKDKF---------DLAFANDPD 288 Query: 279 GDRSMILGKGI-FVNPSDSLAIMV----ANAGLIPGYATGLVGVARSMPTSAALDRVAEK 333 DR I+ +NP+ L++ + + L A GV +++ +S+ +DRVA Sbjct: 289 ADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSA----GVGKTLVSSSMIDRVAAA 344 Query: 334 LNLKLFETPTGWKFFNNLLENGMITICGEESFGT------GSNHSREKDGIWSILFWLNI 387 L KL+E P G+K+F + L +G + GEES G G+ + +KDGI L I Sbjct: 345 LGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEI 404 Query: 388 LAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQK 447 LAV G+ + + +G YY+R D P +KA RLK L S ++ Sbjct: 405 LAVTGKDPGQLYQELTERFGEPYYARIDAPATPEQKA---------RLKKL---SP--EQ 450 Query: 448 IKQ---AGDFVYTDSTN--GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYE 502 + AGD + T GN + G++V N R SG TE+ ++Y +++ Sbjct: 451 VTATELAGDPILAKLTRAPGNGASIGGLKVTTAN-GWFAARPSG--TED-VYKIYAESFL 506 Query: 503 PDSSKHLKNTQEMLSDLV 520 S +HLK Q+ ++V Sbjct: 507 --SEEHLKKIQKEAQEIV 522 >gnl|CDD|145827 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I. Length = 138 Score = 132 bits (335), Expect = 2e-31 Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 13 DQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNV--DCAEKTLVVGGDGRFYNHIVIQKI 69 Q GTSG+R KV V + + QAI + + +VVG D R+ + + + + Sbjct: 1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARAL 60 Query: 70 IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129 AANG I++G +L TPA+S RK A GGI++TASHNP GIK+ S Sbjct: 61 AAGLAANGVEVILLG---LLPTPALSFATRKLNADGGIMITASHNPPDYN---GIKFYDS 114 Query: 130 SGGSASEQQTEDIFEESKKITSY 152 GG S + E I +K Y Sbjct: 115 DGGPISPEVEEKIEAIIEKEDFY 137 >gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 487 Score = 117 bits (296), Expect = 8e-27 Identities = 113/528 (21%), Positives = 194/528 (36%), Gaps = 128/528 (24%) Query: 17 GTSGLRKKVSV-FQQ-NSYT--------ENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVI 66 GT+GLR K+ + N YT N+++ D + +V+G D R + Sbjct: 5 GTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGP--DAKNRGVVIGYDSRHNSREFA 62 Query: 67 QKIIKIAAANGF-ARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIK 125 + + AANG + + TP +S +R A GI++TASHNP + G K Sbjct: 63 ELTAAVLAANGIKVYLF---DDLRPTPLLSFAVRHLGADAGIMITASHNPK---EYNGYK 116 Query: 126 YNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IEN 183 G +I EE IEA ++ + L + I I + Sbjct: 117 VYWEDGAQIIPPHDAEIAEE---------IEAVLEPLDIKFEEALDSGLIKYIGEEIDDA 167 Query: 184 YV-ALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLE 242 Y+ A+ + + + + +I ++ V G + L+ G N I +E Sbjct: 168 YLEAVKKLLVNPELNEGK---DLKIVYTPLHGVGGKFVPRALKE-AGFT-----NVIVVE 218 Query: 243 DFGGCHPDPN--------------LIHAKDLYDRMMMHDSADFGAACDGDGDRSMI---- 284 + PDP+ L A +L + AD A D D DR + Sbjct: 219 E--QAEPDPDFPTVKFPNPEEPGALDLAIELAKK---VG-ADLILATDPDADRLGVAVKD 272 Query: 285 -LGKGIFVNPSDSLAIMVAN--------AGLIP--GYATGLVGVARSMPTSAALDRVAEK 333 G+ + + + ++A+ G +P + +++ +S L ++A+K Sbjct: 273 KDGEWRLLT-GNEIGALLADYLLEQRKEKGKLPKNPV------IVKTIVSSELLRKIAKK 325 Query: 334 LNLKLFETPTGWKFF----NNLLENGMITICG-EESFG-TGSNHSREKDGIWSILFWL-- 385 +K+ ET TG+K+ L G + G EES G R+KDGI + Sbjct: 326 YGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEM 385 Query: 386 -NILAVRGESLLDIVHKHWATYG----RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIG 440 L +G++LLD + + + YG + ++ EK + M+ R Sbjct: 386 AAYLKAQGKTLLDRLDELYEKYGYYKEKTISITFEGK-EGPEKIKAIMDRLR-------- 436 Query: 441 SSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTD 488 N NV + ++ SR+ R SGT+ Sbjct: 437 -------------------NNPNV-----LTFYLEDGSRVTVRPSGTE 460 >gnl|CDD|145829 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III. Length = 111 Score = 105 bits (266), Expect = 2e-23 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%) Query: 293 PSDSLAIMVANA--GLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN 350 D + ++A L PG V +++ +S ALDRVAE+L +L T G K+ Sbjct: 1 DGDQILALLARYLLELKPG------AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKE 54 Query: 351 LLENGMITICGEESFGTGS--NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406 + + GEES G + + KDGI + L L +LA G+SL +++ + Y Sbjct: 55 KMREEGAVLGGEES-GHIIFLDFATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111 >gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 439 Score = 104 bits (262), Expect = 6e-23 Identities = 116/520 (22%), Positives = 200/520 (38%), Gaps = 100/520 (19%) Query: 17 GTSGLRKKVSVFQQNSYTENFI----QAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKI 72 GTSG+R V T +A+ T+VVG D R ++ +I Sbjct: 3 GTSGIRGVVGEE----LTPELALKVGKAL--GTYLGGGTVVVGRDTRTSGPMLKNAVIAG 56 Query: 73 AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG- 131 + G +I GI+ TPA+ + +RK G+++TASHNP + GIK G Sbjct: 57 LLSAG-CDVI--DIGIVPTPALQYAVRKL-GDAGVMITASHNPP---EYNGIKLVNPDGT 109 Query: 132 --GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALME 189 E++ E+I + V + +G+ I+ Y+ + Sbjct: 110 EFSREQEEEIEEIIFSER---------FRRVAWDEVGS------VRREDSAIDEYIEAIL 154 Query: 190 NIFDFDAIRKLLSFGFRIDIDCMN---AVTGPYAKEILERKLGAPTGSVRNFIPLEDFGG 246 + D D + G ++ +DC N ++T PY +L R+LG ++ N P F G Sbjct: 155 DKVDIDGGK-----GLKVVVDCGNGAGSLTTPY---LL-RELGCKVITL-NANPDGFFPG 204 Query: 247 CHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAG 305 P+P + +L ++ AD G A DGD DR++ + KG F++ LA++ A Sbjct: 205 RPPEPTPENLSEL-MELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALL---AK 260 Query: 306 LIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEES- 364 + G V S ++ V E+ ++ TP G + GE + Sbjct: 261 YLLEEGGGKVVTPVD--ASMLVEDVVEEAGGEVIRTPVGDVHVAEEMIENGAVFGGEPNG 318 Query: 365 ---FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPT 421 F H +DGI + L +LA + L +++ + Y + + P Sbjct: 319 GWIFPD---HQLCRDGIMTAALLLELLA-EEKPLSELL----DELPK-YPLLREKVECPD 369 Query: 422 EKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRII 481 EK ++ M L + D D G+R+ +++ ++ Sbjct: 370 EKKEEVMEAVEEELSDAD------------EDVDTID----------GVRIEYED-GWVL 406 Query: 482 YRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 R SG TE +R+ E + + K E+L + Sbjct: 407 IRPSG--TEP-KIRITA---EAKTEERAK---ELLEEGRS 437 >gnl|CDD|36434 KOG1220, KOG1220, KOG1220, Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]. Length = 607 Score = 102 bits (256), Expect = 2e-22 Identities = 118/555 (21%), Positives = 212/555 (38%), Gaps = 71/555 (12%) Query: 17 GTSGLRKK-VSVFQQ------NSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKI 69 GT+GLR + + F + + + + N +V+G DGR+ + + + Sbjct: 63 GTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELV 122 Query: 70 IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129 + NGF + + ++ TP V + A GI++TASHNP +D G K S Sbjct: 123 AAVFLLNGFKVYLFSE--LVPTPFVPFAVLTLGADAGIMITASHNPK---EDNGYKVYWS 177 Query: 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IENYVAL 187 +G E I +S + + + D + + + L + ++VI P E Y L Sbjct: 178 NGAQIISPHDEKI-SDSIEANLEPRLSSWDDSL--VKSHPLLHDILAVIIPPYFEVYKEL 234 Query: 188 MENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNF-IPLEDFGG 246 + G + + V G + K+ LE+ SV P F Sbjct: 235 LPCFHREANPLS----GLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPT 290 Query: 247 CH-PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRS----MILGKGIFVNPSDSLAIMV 301 P+P A DL + + +SAD A D D DR + G+ N ++ A++ Sbjct: 291 VPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLS 350 Query: 302 A-------NAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN---- 350 + + V + S +S +AE ET TG+K+ N Sbjct: 351 WWVLEEHKGSTPVQD-----VSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIE 405 Query: 351 LLENGMITICG-EESFG--TGSNHSREKDGIWSILFWLNILA----VRGESLLDIVHKHW 403 L ++G EES G G NH +KDG+ + + + ++ SL +++ + Sbjct: 406 LEKDGKEVHFAFEESIGYMFGENH-LDKDGVSAAVKFASMACRLRLAGNLSLSEVLEDLY 464 Query: 404 ATYGRNYYSRYD--YLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461 YG Y+S + L I E + + R I IG++ + T + Sbjct: 465 ERYG--YHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYD 522 Query: 462 GNVSDK----------QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKN 511 + D Q + F+N + R SGT+ + +++YI+ P + K+ Sbjct: 523 VSSPDHKAVLPVSTSSQMVTFTFNNGGVVTLRTSGTEPK---IKLYIEACLPPDA---KS 576 Query: 512 TQEMLSDLVEVSQRI 526 + ++ + + Sbjct: 577 WERLIKLANLTTSAV 591 >gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 443 Score = 95.7 bits (239), Expect = 3e-20 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 52/265 (19%) Query: 49 EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKG------GILSTPAVSHLIRKYK 102 K +VVG DGR + ++AAA ++ G G++ TP + Sbjct: 36 AKKVVVGRDGRLSSP-------ELAAA--LIEGLLAAGCDVIDIGLVPTPVLYFATFHLD 86 Query: 103 ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDI 162 A GG+++TASHNP + G K GG S + + + + E D Sbjct: 87 ADGGVMITASHNPP---EYNGFKI-VIGGGPLSGEDIQAL---------RERAEKGDF-- 131 Query: 163 NHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKE 222 ++ +D + +Y+ + + KL ++ +D N GP A + Sbjct: 132 ----AAATGRGSVEKVDILPDYIDRLLSDI------KLGKRPLKVVVDAGNGAAGPIAPQ 181 Query: 223 ILERKLGAPTGSVRNFIPLEDFGGCHPDP----NLIHAKDLYDRMMMHDSADFGAACDGD 278 +LE LG + P F HPDP NL +DL + + AD G A DGD Sbjct: 182 LLEA-LGCEVIPL-FCEPDGTFPNHHPDPTDPENL---EDLIAAVKENG-ADLGIAFDGD 235 Query: 279 GDRSMIL-GKGIFVNPSDSLAIMVA 302 GDR ++ KG + D L + A Sbjct: 236 GDRLGVVDEKGEIIWG-DRLLALFA 259 >gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 445 Score = 90.4 bits (225), Expect = 1e-18 Identities = 84/355 (23%), Positives = 124/355 (34%), Gaps = 81/355 (22%) Query: 19 SGLRKKVSVFQQNSYTENFIQAI--FNNVDCAEKTLVVGGDGR----FYNHIVIQKIIKI 72 SG+R V ++ A + +VVG DGR IVI Sbjct: 5 SGIRGIVGEGLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVI------ 58 Query: 73 AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPA--------GATQDFGI 124 A +I GI TP V L+R+ +ASGGII+TASHNP G G Sbjct: 59 GALLACGCDVI-DLGIAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPD---GE 114 Query: 125 KYNTSSGG---SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPI 181 G S +E + + +A I+ + + + +D I Sbjct: 115 FLTPDEGEEVLSCAEAGSAQKAGYDQLGEVTFSEDAIAEHIDKV-------LALVDVDVI 167 Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241 IR+ F++ +D +N G +LE KLG I L Sbjct: 168 --------------KIRER---NFKVAVDSVNGAGGLLIPRLLE-KLGC------EVIVL 203 Query: 242 EDFGGCHPDPNLIH-----AKDLYD--RMMMHDSADFGAACDGDGDRSMILG-KGIFVNP 293 C P H ++L + AD G A D D DR ++ G + Sbjct: 204 ----NCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGE 259 Query: 294 SDSLAIMVANAGLIPGYATGLVG----VARSMPTSAALDRVAEKLNLKLFETPTG 344 +LA+ V Y G V ++ TS AL+ +A K + +F + G Sbjct: 260 EYTLALAVD-------YVLKYGGRKGPVVVNLSTSRALEDIARKHGVPVFRSAVG 307 >gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 434 Score = 87.9 bits (219), Expect = 6e-18 Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 65/329 (19%) Query: 87 GILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSAS---EQQTEDIF 143 G++ TPAV++L RK +A G++++ASHNP +D GIK+ +S G E++ E + Sbjct: 72 GVIPTPAVAYLTRKLRADAGVVISASHNPF---EDNGIKFFSSDGYKLPDEVEEEIEALI 128 Query: 144 EESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSF 203 ++ IG + D Y+ +++ F D LLS Sbjct: 129 DK---------ELELPPTGEKIGR------VYRIDDARGRYIEFLKSTFPKD----LLS- 168 Query: 204 GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLI-------HA 256 G +I +DC N A E+ R+LGA I + PD I H Sbjct: 169 GLKIVLDCANGAAYKVAPEVF-RELGA------EVIVI----NNAPDGLNINVNCGSTHP 217 Query: 257 KDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAI----MVANAGLIPGYA 311 + L + ++ + AD G A DGD DR + + KG V+ LAI + L Sbjct: 218 ESL-QKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGN-- 274 Query: 312 TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKF-FNNLLENGMITICGEESFGTG-- 368 +VG M ++ L++ ++L +KL T G ++ +L++G + GE+S G Sbjct: 275 -TVVGT--VM-SNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHG-ANLGGEQS---GHI 326 Query: 369 --SNHSREKDGIWSILFWLNILAVRGESL 395 +HS DG+ + L L I+ G+SL Sbjct: 327 IFLDHSTTGDGLLTALQLLAIMKRSGKSL 355 >gnl|CDD|145828 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II. Length = 103 Score = 75.8 bits (187), Expect = 3e-14 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241 + Y+ + + FD +A++K G ++ D ++ V G E+L+R LGA N P Sbjct: 1 DAYIDRLASAFDLEALKKR---GLKVVYDPLHGVGGEILPELLKR-LGAEVVEE-NCEPD 55 Query: 242 EDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMI 284 DF P+P A +L ++ AD G A DGD DR + Sbjct: 56 GDFPTKAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGV 98 >gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 441 Score = 53.0 bits (128), Expect = 2e-07 Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 59/349 (16%) Query: 73 AAANGFARIIIGKGGILST------------PAVSHLIRKYKASGGIILTASHNPAGATQ 120 A+ R +I G+LST P + IR ASGGI + S + + Sbjct: 45 RASRMLKRALIS--GLLSTGVNVRDLGALPLPVARYAIRFLGASGGIHVRTSPDDPDKVE 102 Query: 121 DFGIKYNTSSG---GSASEQQTEDIF--EESKKITSYQIIEANDVDINHIGTKELANMTI 175 I++ S G A E++ E+ F E+ ++ +I DI Sbjct: 103 ---IEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEI-----GDITEP---------- 144 Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235 D +E Y+ + D ++K G ++ ID V G +L R LG V Sbjct: 145 --PDFVEYYIRGLLRALDTSGLKK---SGLKVVIDYAYGVAGIVLPGLLSR-LGC--DVV 196 Query: 236 RNFIPLEDFGGCHPDPNLIH-AKDLYDRMMMHDSADFGAACDGDGDR-SMILGKGIFVNP 293 L++ + D R++ ADFG D +G+R ++ G ++ Sbjct: 197 ILNARLDE--DAPRTDTERQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISD 254 Query: 294 SDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF-NNLL 352 D L +V+ L+ + V + + ++++AE+ ++ T T + L Sbjct: 255 -DLLTALVS---LLVLKSEPGGTVVVPVTAPSVIEQLAERYGGRVIRTKTSPQALMEAAL 310 Query: 353 ENGMITICGEESFG--TGSNHSREKDGIWSILFWLNILAVRGESLLDIV 399 EN ++ G+ F D I +++ L +LA SL IV Sbjct: 311 ENVVLAGDGDGGFIFPEFHPGF---DAIAALVKILEMLARTNISLSQIV 356 >gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 459 Score = 41.4 bits (98), Expect = 6e-04 Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 53/300 (17%) Query: 17 GTSGLRKKVSVFQQN---SYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIA 73 GTSGLR V+ +YT F+Q + + T+ VG D R + + Sbjct: 3 GTSGLRGLVTDLTDEVCYAYTRAFLQHLESKF--PGDTVAVGRDLRPSSPRIAAACAAAL 60 Query: 74 AANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDF-GIKYNTSSGG 132 GF + G + TPA++ K A I++T SH PA D G+K+ G Sbjct: 61 RDAGFRVVDC---GAVPTPALALYAMKRGA-PAIMVTGSHIPA----DRNGLKFYRPDG- 111 Query: 133 SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIF 192 E +K I A V++ + D + Y+A + F Sbjct: 112 -----------EITK--ADEAAILAALVELPEALFDPAGALLPPDTDAADAYIARYTDFF 158 Query: 193 DFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGA---PTGSVRNFIPL--EDFGGC 247 A L G RI + ++V ILE LGA P G FIP+ E Sbjct: 159 GAGA----LK-GLRIGVYQHSSVGRDLLVRILE-ALGAEVVPLGRSDTFIPVDTE----A 208 Query: 248 HPDPNLIHAKDLYDRMMMHDSADFGA--ACDGDGDRSMILG-KGIFVNPSDSLAIMVANA 304 + A A + DGDGDR ++ G ++ D L ++ A Sbjct: 209 VRPEDRALAAAWA------AEHGLDAIVSTDGDGDRPLVADETGEWL-RGDILGLLTARF 261 Score = 29.1 bits (66), Expect = 3.5 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 418 GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNH 477 PTEK+Q + RL A F ++ G+R+ F N Sbjct: 378 NFPTEKSQALIA----RLSA--DPEAR------AAFFFALGGEVASIDTTDGLRMTFANG 425 Query: 478 SRIIYRISGTDTENSTLRVYI 498 + R SG E LR Y+ Sbjct: 426 DIVHLRPSGNAPE---LRCYV 443 >gnl|CDD|39814 KOG4614, KOG4614, KOG4614, Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]. Length = 287 Score = 37.4 bits (86), Expect = 0.011 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 146 SKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGF 205 S+ + S +E+ K+L +S ID +A+++ F+F+ +F F Sbjct: 184 SQNMISSWFLESF------GNRKDLQLFEVSFIDKWLLGLAVLQKPFNFENSVLQWAFYF 237 Query: 206 RIDIDCMNAVTG 217 R +I N +TG Sbjct: 238 RKEIKVNNLLTG 249 >gnl|CDD|144122 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase, C-terminal domain. Length = 71 Score = 36.5 bits (85), Expect = 0.021 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 6/55 (10%) Query: 467 KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521 + ++++F++ R++ R SGT+ LRVY+ E D L+ +++L++ Sbjct: 23 AEALKILFEDGRRLVVRPSGTEPV---LRVYV---EADDEAELEEIAAEVAELLK 71 >gnl|CDD|38950 KOG3746, KOG3746, KOG3746, Uncharacterized conserved protein [Function unknown]. Length = 553 Score = 30.8 bits (69), Expect = 0.91 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 399 VHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI---GSSFIGQKIKQAGDFV 455 +H T+G + R PT + QD+ D Y L N + + +K A Sbjct: 388 IHFEDRTFGYIDFRRRGEKDPPTFRVQDYGWDHGYSLMNRLYPTLGQLLDEKFDHAYTLT 447 Query: 456 YTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYID 499 Y + N D +R N+ ++ I D + + +D Sbjct: 448 YNTAAMHNEVDTSALRRAIWNYIHCLFGIRYDDYDYGEINQLLD 491 >gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 513 Score = 30.3 bits (69), Expect = 1.6 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 3/20 (15%) Query: 106 GIILTASHNPAGATQDFGIK 125 G+++TASHNP +D G+K Sbjct: 38 GVMITASHNPV---EDNGVK 54 >gnl|CDD|145670 pfam02634, FdhD-NarQ, FdhD/NarQ family. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Length = 235 Score = 30.2 bits (69), Expect = 1.7 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 55/180 (30%) Query: 204 GFRIDIDCMNA-VTGPYAKEILERKLGAPTGSV-----RNFIPLEDFGGCHPDPNL-IHA 256 +D D + V LER+L TG+ F+ + + A Sbjct: 47 SIEVDEDEGSVEVRTRAGALKLERRLLKRTGTSGCGCGVEFLEDALLRAIPLLSDARLDA 106 Query: 257 KDLYDRM--MMHDSADF-------GAA-CDGDG---------------DRSMILGKGIF- 290 + ++ M + + AA D DG D+ ++G + Sbjct: 107 ETIFALMEALNEHQELYRETGGVHAAALFDADGEILAFREDVGRHNALDK--LIGAALLA 164 Query: 291 -VNPSDSLAI--------MV---ANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKL 338 ++ SD + + MV A AG IP V V+RS PTS A++ +AE+L + L Sbjct: 165 GIDLSDKILLVTGRLSSEMVQKAARAG-IP------VLVSRSAPTSLAVE-LAEELGITL 216 >gnl|CDD|38080 KOG2869, KOG2869, KOG2869, Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis]. Length = 379 Score = 29.1 bits (65), Expect = 3.2 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 27/130 (20%) Query: 2 LCTIVPTVPYQDQKPGTSGLRKK---VSVFQQ--NSYTENFIQAIFNNVDCAE-KTLVVG 55 +C + + K S RK+ VS ++ + EN +QAI +V+ K +VV Sbjct: 149 ICLVTKSSTILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVA 208 Query: 56 GDG----RFYNHIVIQ--------------KIIKIAAANGFARIIIGKGGILSTPAVSHL 97 G +F +++ Q K + A++G+ + +L PAV+ Sbjct: 209 SPGFVKDQFMDYLFQQAVKLDLKLILENKSKFPLVHASSGYKHSL---NEVLKDPAVASK 265 Query: 98 IRKYKASGGI 107 ++ KA+ + Sbjct: 266 LQDTKAAKEV 275 >gnl|CDD|36327 KOG1111, KOG1111, KOG1111, N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones, Lipid transport and metabolism]. Length = 426 Score = 28.7 bits (64), Expect = 4.7 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%) Query: 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDS----LAIMVANAGL 306 P I +++ +++ + D D R +++ IF+N S + + I+ A + Sbjct: 236 PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295 Query: 307 IPGYATGLVGVARSMPTSAAL------DRVAEKLNLKLFETPTGWKFFNNLLEN 354 +P +T + G+ +P D + + + + T F++ ++ Sbjct: 296 LPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKK 349 >gnl|CDD|34993 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]. Length = 542 Score = 28.5 bits (63), Expect = 5.5 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 56 GDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV--SHLIRKYKASGGIILTAS 112 GDG N IQ I A+ G +++ G LS P S+ + + A G +L +S Sbjct: 92 GDGATDNTAAIQAAIDACASAGGGTVLLPAGTYLSGPLFLKSN-VTLHLAEGATLLASS 149 >gnl|CDD|33313 COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms]. Length = 237 Score = 28.4 bits (63), Expect = 5.9 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%) Query: 402 HWATYGRNYYSRYDYLGIPTEKA-QDFMN 429 H YG + Y ++GIP K+ D N Sbjct: 32 HKWYYGNDVTYNYTWMGIPCIKSPSDMWN 60 >gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid transport and metabolism]. Length = 364 Score = 27.7 bits (61), Expect = 8.1 Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 11 YQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVG 55 D KPGT V ++ YTE + N +D A K ++ Sbjct: 187 LSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILA 231 >gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity. Length = 385 Score = 27.8 bits (62), Expect = 8.2 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 49 EKTLVVGGDGRFYNHI-VIQKIIKIAAANGFARI------IIG-KG-GILSTPAVSHLIR 99 EK + V +G + + +I ++ +IA +G RI +IG K + P + LI+ Sbjct: 220 EKGVPVALNGEKLDPVELILELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIK 279 Query: 100 KYKASGGIILT 110 ++ + L Sbjct: 280 AHRDLESLTLD 290 >gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]. Length = 449 Score = 27.8 bits (62), Expect = 8.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMIT 358 LVG R + A++ VA+K FE G + LE G++ Sbjct: 366 LVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI 410 >gnl|CDD|145176 pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186. Length = 196 Score = 27.7 bits (62), Expect = 8.5 Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520 G +++Q RVV D+ R+ + + TL + + + + LK + L +L+ Sbjct: 64 KGRAAERQPPRVVVDSTLRVPLDARVLNDDAPTLVATTEPADKEKVEKLKVLRVDLKELL 123 Query: 521 E 521 Sbjct: 124 R 124 >gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]. Length = 539 Score = 27.6 bits (61), Expect = 9.8 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 106 GIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137 G+++TASHNP +D G+K SG + Sbjct: 62 GVMITASHNP---VEDNGVKIVDPSGEMLAAS 90 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0884 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,664,892 Number of extensions: 370254 Number of successful extensions: 989 Number of sequences better than 10.0: 1 Number of HSP's gapped: 918 Number of HSP's successfully gapped: 41 Length of query: 542 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 443 Effective length of database: 4,124,446 Effective search space: 1827129578 Effective search space used: 1827129578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (26.6 bits)