RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus
Liberibacter asiaticus str. psy62]
         (542 letters)



>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
           bidirectional interconversion of glucose-1-phosphate
           (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
           1,6-diphosphate intermediate, an important metabolic
           step in prokaryotes and eukaryotes. In one direction,
           G-1-P produced from sucrose catabolism is converted to
           G-6-P, the first intermediate in glycolysis. In the
           other direction, conversion of G-6-P to G-1-P generates
           a substrate for synthesis of UDP-glucose which is
           required for synthesis of a variety of cellular
           constituents including cell wall polymers and
           glycoproteins. The PGM1 family also includes a
           non-enzymatic PGM-related protein (PGM-RP) thought to
           play a structural role in eukaryotes, as well as
           pp63/parafusin, a phosphoglycoprotein that plays an
           important role in calcium-regulated exocytosis in
           ciliated protozoans. PGM1 belongs to the
           alpha-D-phosphohexomutase superfamily which includes
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Other members of this superfamily include
           phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 548

 Score =  853 bits (2206), Expect = 0.0
 Identities = 309/547 (56%), Positives = 399/547 (72%), Gaps = 11/547 (2%)

Query: 4   TIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVD---CAEKTLVVGGDGRF 60
             VPT PY+ QKPGTSGLRKKV VFQQ +Y ENF+Q+IFN +        TLVVGGDGR+
Sbjct: 1   QTVPTKPYEGQKPGTSGLRKKVKVFQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRY 60

Query: 61  YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120
           YN   IQ IIKIAAANG  ++++G+ G+LSTPAVS +IRK KA+GGIILTASHNP G   
Sbjct: 61  YNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEG 120

Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKEL--ANMTISVI 178
           DFGIKYNTS+GG A E  T+ I+E +KKIT Y+I +  DVD++ IG  +      T+ VI
Sbjct: 121 DFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKFGGKPFTVEVI 180

Query: 179 DPIENYVALMENIFDFDAIRKLLSF-GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237
           D +E+YV LM+ IFDFDAI+KLLS  GF++  D M+ VTGPYAK+I   +LGAP  SV N
Sbjct: 181 DSVEDYVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVN 240

Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSL 297
             PL DFGG HPDPNL +AKDL + M   +  DFGAA DGDGDR+MILGKG FV PSDS+
Sbjct: 241 CTPLPDFGGGHPDPNLTYAKDLVELMKSGE-PDFGAASDGDGDRNMILGKGFFVTPSDSV 299

Query: 298 AIMVANAGLIPGY-ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGM 356
           A++ ANA LIP +   GL GVARSMPTS ALDRVA+KL + LFETPTGWKFF NL++ G 
Sbjct: 300 AVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGK 359

Query: 357 ITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDY 416
           +++CGEESFGTGS+H REKDG+W++L WL+ILA R  S+ DIV +HW  YGRN+Y+RYDY
Sbjct: 360 LSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQKYGRNFYTRYDY 419

Query: 417 LGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---KIKQAGDFVYTDSTNGNVSDKQGIRVV 473
             + +E A   M+  R  + +L G    G    K+ +A DF YTD  +G+VS KQG+R++
Sbjct: 420 EEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRII 479

Query: 474 FDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYI 533
           F++ SRII+R+SGT +  +T+R+YI++YE D SK+  + Q  L  L+E++ ++S L+ + 
Sbjct: 480 FEDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALKLSKLKEFT 539

Query: 534 GHTNPSI 540
           G   P++
Sbjct: 540 GREEPTV 546


>gnl|CDD|35844 KOG0625, KOG0625, KOG0625, Phosphoglucomutase [Carbohydrate
           transport and metabolism].
          Length = 558

 Score =  675 bits (1742), Expect = 0.0
 Identities = 299/555 (53%), Positives = 393/555 (70%), Gaps = 24/555 (4%)

Query: 5   IVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEK---TLVVGGDGRFY 61
            VPT PY+ QKPGTSGLRKKV VF+Q +YTENF+QAI N +   +    TLVVGGDGR+Y
Sbjct: 7   TVPTKPYEGQKPGTSGLRKKVKVFKQPNYTENFVQAIMNALPGEKSKGATLVVGGDGRYY 66

Query: 62  NHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKY-KASGGIILTASHNPAGATQ 120
           N   IQ I KIAAANG  R+I+G+ GILSTPAVS +IRKY KA GGIILTASHNP G   
Sbjct: 67  NKEAIQIIAKIAAANGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEG 126

Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTISVID 179
           DFGIK+N  +GG A E  T+ I+E +K I+ Y+I +   +D++ +G T      T+ VID
Sbjct: 127 DFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKIDLSTVGKTSFDGPFTVEVID 186

Query: 180 PIENYVALMENIFDFDAIRKLLSF--GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRN 237
           P+++YV LM+ IFDFD I+ LLS     +   D M+ VTGPY K I   +LGAP  S++N
Sbjct: 187 PVKDYVNLMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQN 246

Query: 238 FIPLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGK-GIFVNPSDS 296
            +PLEDFGG HPDPNL +AKDL DR+      DFGAA DGDGDR+MILGK G FV PSDS
Sbjct: 247 CVPLEDFGGGHPDPNLTYAKDLVDRVD-RGEIDFGAAFDGDGDRNMILGKNGFFVTPSDS 305

Query: 297 LAIMVANAGLIPGYAT-GLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENG 355
           +AI+ ANA  IP +   G+ G ARSMPTS ALDRVA+KL L ++E PTGWKFF NL++ G
Sbjct: 306 VAIIAANAEAIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAG 365

Query: 356 MITICGEESFGTGSNHSREKDGIWSILFWLNILAVRGESLL-DIVHKHWATYGRNYYSRY 414
            ++ICGEESFGTGS+H REKDGIW++L WL+ILA   ++++ DIV +HWA YGRN+++RY
Sbjct: 366 KLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHNKQNVVEDIVKEHWAKYGRNFFTRY 425

Query: 415 DYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQ---------KIKQAGDFVYTDSTNGNVS 465
           DY  +  E A   M D    L+ L+  SF+G+         K+ +A DF YTD  +G+VS
Sbjct: 426 DYEEVEAEGANKMMED----LEALVSDSFVGKSFSPGDEVYKVAKADDFEYTDPVDGSVS 481

Query: 466 DKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQR 525
            KQG+R+VF++ SRI++R+SGT +  +T+R+YI++YE D SK  ++ Q  L  L++++ +
Sbjct: 482 KKQGLRIVFEDGSRIVFRLSGTGSSGATIRLYIESYEKDVSKIDQDAQVALKPLIDIALK 541

Query: 526 ISCLRHYIGHTNPSI 540
           IS L+ + G   P++
Sbjct: 542 ISKLKEFTGREAPTV 556


>gnl|CDD|30382 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
           metabolism].
          Length = 524

 Score =  522 bits (1347), Expect = e-149
 Identities = 197/539 (36%), Positives = 277/539 (51%), Gaps = 42/539 (7%)

Query: 6   VPTVPYQDQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNVDCAEK--TLVVGGDGRFYN 62
            PT PYQD K GTSG R    VF  N ++   FIQAI +          LVVGGD    +
Sbjct: 8   DPTNPYQDVKFGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALS 67

Query: 63  HIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIR----KYKA-SGGIILTASHNPAG 117
              IQ  +++ AANG   I+ G+GG   TPA SH I     KYKA + GI+LT SHNP  
Sbjct: 68  EPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNPP- 126

Query: 118 ATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIG-TKELANMTIS 176
             +D GIKYN  +GG A E+ T+ I    +    Y+I     +D+  IG  +   ++T+ 
Sbjct: 127 --EDGGIKYNPPNGGPAPEKVTDAIEA--RANDLYKIG---LLDVKRIGLDQAYGSLTVK 179

Query: 177 VIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVR 236
           +IDP+++YV L+E IFDFDAIRK    G R+  D +  VTGPY K I E+ L   TG  +
Sbjct: 180 IIDPVKDYVELLEEIFDFDAIRK---AGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQ 236

Query: 237 NFIPLEDFGGCHPDPNLIHAK---DLYDRMM-MHDSADFGAACDGDGDRSMILGKG-IFV 291
           N  P  DF G  PD N+            ++ + D  DF AA DGDGDR  I+  G   +
Sbjct: 237 NVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLM 296

Query: 292 NPSDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNL 351
           NP+ SLA+ +    L   Y  G+V V +++ +SAA+DRV  KL   L+E P G+K+F + 
Sbjct: 297 NPNHSLAVAIEYLFLHRPYWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDG 356

Query: 352 LENGMITICGEESFGTGSNHSREKDGIWSILFWLNILAVRG----ESLLDIVHKHWATYG 407
           L+ G     GEES   G++  REK G+W+     NILA+           I  +H+A  G
Sbjct: 357 LDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITAVTGKIPQEHYAELG 414

Query: 408 RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDK 467
           RN+  R DY  +  E A         RL+ L         +       Y     GN +  
Sbjct: 415 RNFG-RPDYERVDAEAANAQKA----RLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAI 469

Query: 468 QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRI 526
            G++V  +N      R SGT+   +T ++Y +++E D  +HLK  Q+  +++V    +I
Sbjct: 470 GGLKVTTEN-GWFAARPSGTE---ATYKIYAESFEGD--EHLKQIQKEAAEIVSEVLKI 522


>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
           of unknown function belongs to the
           alpha-D-phosphohexomutase superfamily and is found in
           both archaea and bacteria. The
           alpha-D-phosphohexomutases include several related
           enzymes that catalyze a reversible intramolecular
           phosphoryl transfer on their sugar substrates. Other
           members of this superfamily include phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four structural domains (subdomains)
           with a centrally located active site formed by four
           loops, one from each subdomain. All four subdomains are
           included in this alignment model..
          Length = 461

 Score =  224 bits (574), Expect = 4e-59
 Identities = 137/457 (29%), Positives = 220/457 (48%), Gaps = 60/457 (13%)

Query: 48  AEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGI 107
             + +VVG D RF +    + + ++ AANG    +  +   + TPAVS  ++K  A+GG+
Sbjct: 38  GGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLSDR--PVPTPAVSWAVKKLGAAGGV 95

Query: 108 ILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGT 167
           ++TASHNP    +  G+K   + GGSA  + T               IEA        G 
Sbjct: 96  MITASHNPP---EYNGVKVKPAFGGSALPEITAA-------------IEARLASGEPPGL 139

Query: 168 KELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERK 227
           +  A   I  IDP  +Y+  + ++ D +AIR+    G ++ +D M      Y +E+L R 
Sbjct: 140 EARAEGLIETIDPKPDYLEALRSLVDLEAIRE---AGLKVVVDPMYGAGAGYLEELL-RG 195

Query: 228 LGAPTGSVRNFI-PLEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDR-SMIL 285
            G     +R    PL  FGG  P+P   +  +L +  +    AD G A DGD DR   + 
Sbjct: 196 AGVDVEEIRAERDPL--FGGIPPEPIEKNLGELAEA-VKEGGADLGLATDGDADRIGAVD 252

Query: 286 GKGIFVNPSDSLAIM----VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFET 341
            KG F++P+  LA++    + N GL      G   V +++ T+  +DR+AEK  L ++ET
Sbjct: 253 EKGNFLDPNQILALLLDYLLENKGL-----RG--PVVKTVSTTHLIDRIAEKHGLPVYET 305

Query: 342 PTGWKFFNNLLENGMITICGEESFGTG-SNHSREKDGIWSILFWLNILAVRGESLLDIVH 400
           P G+K+    +    + I GEES G G   H  E+DGI + L  L  +A  G+ L ++V 
Sbjct: 306 PVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVA 365

Query: 401 KHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDST 460
           +    YG +YY R D L +   + +  +     +LKN    S  G K+ +          
Sbjct: 366 ELEEEYGPSYYDRID-LRLTPAQKEAILE----KLKNEPPLSIAGGKVDE---------- 410

Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVY 497
              V+   G+++V ++ S ++ R SGT+     LR+Y
Sbjct: 411 ---VNTIDGVKLVLEDGSWLLIRPSGTE---PLLRIY 441


>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
           superfamily includes several related enzymes that
           catalyze a reversible intramolecular phosphoryl transfer
           on their sugar substrates. Members of this family
           include the phosphoglucomutases (PGM1 and PGM2),
           phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). These
           enzymes play important and diverse roles in carbohydrate
           metabolism in organisms from bacteria to humans. Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 355

 Score =  202 bits (517), Expect = 1e-52
 Identities = 98/346 (28%), Positives = 160/346 (46%), Gaps = 44/346 (12%)

Query: 84  GKGGILSTPAVSHLI-RKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDI 142
           G  G   TP  +  + +   ++GGI++TASHNP    +D GIK+    G   + ++ + I
Sbjct: 9   GVVGDDITPETAVALGQAIGSTGGIMITASHNPP---EDNGIKFVDPDGEPIASEEEKAI 65

Query: 143 FEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLS 202
            +           E  D           +   + ++     Y   ++ +FD  A+     
Sbjct: 66  EDL---------AEKEDEPSAVAYELGGSVKAVDILQR---YFEALKKLFDVAALSN--- 110

Query: 203 FGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL-----EDFGGCHPDPNLIHAK 257
             F++ +D +N V GP A ++L  KLGA        IPL      +FG  +PDP      
Sbjct: 111 KKFKVVVDSVNGVGGPIAPQLL-EKLGA------EVIPLNCEPDGNFGNINPDPG--SET 161

Query: 258 DLYDRMMMHD--SADFGAACDGDGDRSMILGK-GIFVNPSDSLAIMVANAGLIPGYATGL 314
           +L   + +     ADFG A DGD DR +++ + G F++  + LA++     L        
Sbjct: 162 NLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFN---PR 218

Query: 315 VGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTGSN-HSR 373
            GV +++ +S ALD+VA+KL +K+  T TG+K+    ++ G + + GEES G        
Sbjct: 219 GGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHP 278

Query: 374 EKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGI 419
            +DGI + L  L ILA  G+SL     + ++   R YY R    G 
Sbjct: 279 GRDGISAALLLLEILANLGKSL----SELFSELPRYYYIRLKVRGW 320


>gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
           metabolism].
          Length = 464

 Score =  180 bits (458), Expect = 8e-46
 Identities = 118/505 (23%), Positives = 206/505 (40%), Gaps = 68/505 (13%)

Query: 17  GTSGLRKKVSVFQQNSYTENFIQAI---FNNV--DCAEKTLVVGGDGRFYNHIVIQKIIK 71
           GT G+R           T  F   +     +V        +VVG D R  + ++   +  
Sbjct: 11  GTDGIRGVAG----EELTPEFALKLGRALGSVLRKKGAPKVVVGRDTRLSSEMLAAALAA 66

Query: 72  IAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG 131
              + G     +G   ++ TPAV+   RK  A  G+++TASHNP    +  GIK+  S G
Sbjct: 67  GLTSAGIDVYDLG---LVPTPAVAFATRKLGADAGVMITASHNPP---EYNGIKFFGSDG 120

Query: 132 GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENI 191
           G  S+   E+I                +       +         + D ++ Y+  ++++
Sbjct: 121 GKISDDIEEEI-----------EAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSL 169

Query: 192 FDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDP 251
            D D   +    G ++ +DC N   G  A  +L ++LGA   S+ N  P   F   +P+P
Sbjct: 170 VDVDLKLR----GLKVVVDCANGAAGLVAPRLL-KELGAEVVSI-NCDPDGLFPNINPNP 223

Query: 252 NLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAGLIPGY 310
                 DL   +  H  AD G A DGD DR +++  +G FV+  D +  ++A   L  G 
Sbjct: 224 GETELLDLAKAVKEHG-ADLGIAFDGDADRLIVVDERGNFVD-GDQILALLAKYLLEKGK 281

Query: 311 ATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEESFGTG-S 369
              +V    ++ +S AL+++A+KL  K+  T  G K+    +        GEES      
Sbjct: 282 LPTVVT---TVMSSLALEKIAKKLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFP 338

Query: 370 NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMN 429
           +H R  DG+ + L  L +LA  G+SL +++ +    Y     S    + +  E   + + 
Sbjct: 339 DHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKY---PQSVEINVRVTDEGKAEVLE 395

Query: 430 DFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDT 489
                L+                           V    G++V  ++  R++ R SGT+ 
Sbjct: 396 KLLEELRE-----------------------AKKVDTIDGVKVELEDGGRVLVRPSGTEP 432

Query: 490 ENSTLRVYIDNYEPDSSKHLKNTQE 514
               +RVY++  + + ++ L     
Sbjct: 433 L---IRVYVEAKDEELAEELAEEIA 454


>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
           (phosphoglucomutase-like) protein of unknown function
           belongs to the alpha-D-phosphohexomutase superfamily.
           The alpha-D-phosphohexomutases include several related
           enzymes that catalyze a reversible intramolecular
           phosphoryl transfer on their sugar substrates. Other
           members of this superfamily include phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 522

 Score =  148 bits (376), Expect = 3e-36
 Identities = 158/558 (28%), Positives = 235/558 (42%), Gaps = 93/558 (16%)

Query: 7   PTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFY----N 62
           P+ P Q    GTSG R   S  +  S+ E  I AI   + C  +    G  G  +     
Sbjct: 14  PSNPAQRVAFGTSGHRG--SSLK-GSFNEAHILAISQAI-CDYRKSQ-GITGPLFLGKDT 68

Query: 63  HIVIQKIIKIA----AANGFARIIIGKGGILSTPAVSHLIRKYKASG------GIILTAS 112
           H + +     A    AANG   II    G   TP +SH I  Y          GI++T S
Sbjct: 69  HALSEPAFISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGLADGIVITPS 128

Query: 113 HNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKE-LA 171
           HNP    +D G KYN   GG A    T  I + +       ++      +  I  +  LA
Sbjct: 129 HNPP---EDGGFKYNPPHGGPADTDITRWIEKRAN-----ALLANGLKGVKRIPLEAALA 180

Query: 172 NMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILER---KL 228
           +      D +  YVA + N+ D DAIRK    G R+ +D +   + PY + I E+    L
Sbjct: 181 SGYTHRHDFVTPYVADLGNVIDMDAIRKS---GLRLGVDPLGGASVPYWQPIAEKYGLNL 237

Query: 229 GAPTGSVRN---FIPLEDFGGCHPDP-------NLIHAKDLYDRMMMHDSADFGAACDGD 278
                 V     F+ L+  G    D         L+  KD +         D   A D D
Sbjct: 238 TVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKLKDKF---------DLAFANDPD 288

Query: 279 GDRSMILGKGI-FVNPSDSLAIMV----ANAGLIPGYATGLVGVARSMPTSAALDRVAEK 333
            DR  I+      +NP+  L++ +     +  L    A    GV +++ +S+ +DRVA  
Sbjct: 289 ADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSA----GVGKTLVSSSMIDRVAAA 344

Query: 334 LNLKLFETPTGWKFFNNLLENGMITICGEESFGT------GSNHSREKDGIWSILFWLNI 387
           L  KL+E P G+K+F + L +G +   GEES G       G+  + +KDGI   L    I
Sbjct: 345 LGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEI 404

Query: 388 LAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQK 447
           LAV G+    +  +    +G  YY+R D    P +KA         RLK L   S   ++
Sbjct: 405 LAVTGKDPGQLYQELTERFGEPYYARIDAPATPEQKA---------RLKKL---SP--EQ 450

Query: 448 IKQ---AGDFVYTDSTN--GNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYE 502
           +     AGD +    T   GN +   G++V   N      R SG  TE+   ++Y +++ 
Sbjct: 451 VTATELAGDPILAKLTRAPGNGASIGGLKVTTAN-GWFAARPSG--TED-VYKIYAESFL 506

Query: 503 PDSSKHLKNTQEMLSDLV 520
             S +HLK  Q+   ++V
Sbjct: 507 --SEEHLKKIQKEAQEIV 522


>gnl|CDD|145827 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase,
           alpha/beta/alpha domain I. 
          Length = 138

 Score =  132 bits (335), Expect = 2e-31
 Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 13  DQKPGTSGLRKKVSVFQQN-SYTENFIQAIFNNV--DCAEKTLVVGGDGRFYNHIVIQKI 69
            Q  GTSG+R KV V +    +     QAI + +        +VVG D R+ +  + + +
Sbjct: 1   RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARAL 60

Query: 70  IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129
               AANG   I++G   +L TPA+S   RK  A GGI++TASHNP       GIK+  S
Sbjct: 61  AAGLAANGVEVILLG---LLPTPALSFATRKLNADGGIMITASHNPPDYN---GIKFYDS 114

Query: 130 SGGSASEQQTEDIFEESKKITSY 152
            GG  S +  E I    +K   Y
Sbjct: 115 DGGPISPEVEEKIEAIIEKEDFY 137


>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
           PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
           is thought to be a phosphopentomutase that catalyzes the
           conversion of the nucleoside breakdown products,
           ribose-1-phosphate and deoxyribose-1-phosphate to the
           corresponding 5-phosphopentoses. PGM2L1 is thought to
           catalyze the 1,3-bisphosphoglycerate-dependent synthesis
           of glucose 1,6-bisphosphate and other
           aldose-bisphosphates that serve as cofactors for several
           sugar phosphomutases and possibly also as regulators of
           glycolytic enzymes. PGM2 and PGM2L1 belong to the
           alpha-D-phosphohexomutase superfamily which includes
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Other members of this superfamily include
           phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 487

 Score =  117 bits (296), Expect = 8e-27
 Identities = 113/528 (21%), Positives = 194/528 (36%), Gaps = 128/528 (24%)

Query: 17  GTSGLRKKVSV-FQQ-NSYT--------ENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVI 66
           GT+GLR K+     + N YT         N+++      D   + +V+G D R  +    
Sbjct: 5   GTAGLRGKMGAGTNRMNDYTVRQATQGLANYLKKKGP--DAKNRGVVIGYDSRHNSREFA 62

Query: 67  QKIIKIAAANGF-ARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIK 125
           +    + AANG    +      +  TP +S  +R   A  GI++TASHNP    +  G K
Sbjct: 63  ELTAAVLAANGIKVYLF---DDLRPTPLLSFAVRHLGADAGIMITASHNPK---EYNGYK 116

Query: 126 YNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IEN 183
                G         +I EE         IEA    ++    + L +  I  I     + 
Sbjct: 117 VYWEDGAQIIPPHDAEIAEE---------IEAVLEPLDIKFEEALDSGLIKYIGEEIDDA 167

Query: 184 YV-ALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLE 242
           Y+ A+ + + + +          +I    ++ V G +    L+   G       N I +E
Sbjct: 168 YLEAVKKLLVNPELNEGK---DLKIVYTPLHGVGGKFVPRALKE-AGFT-----NVIVVE 218

Query: 243 DFGGCHPDPN--------------LIHAKDLYDRMMMHDSADFGAACDGDGDRSMI---- 284
           +     PDP+              L  A +L  +      AD   A D D DR  +    
Sbjct: 219 E--QAEPDPDFPTVKFPNPEEPGALDLAIELAKK---VG-ADLILATDPDADRLGVAVKD 272

Query: 285 -LGKGIFVNPSDSLAIMVAN--------AGLIP--GYATGLVGVARSMPTSAALDRVAEK 333
             G+   +   + +  ++A+         G +P          + +++ +S  L ++A+K
Sbjct: 273 KDGEWRLLT-GNEIGALLADYLLEQRKEKGKLPKNPV------IVKTIVSSELLRKIAKK 325

Query: 334 LNLKLFETPTGWKFF----NNLLENGMITICG-EESFG-TGSNHSREKDGIWSILFWL-- 385
             +K+ ET TG+K+       L   G   + G EES G       R+KDGI +       
Sbjct: 326 YGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEM 385

Query: 386 -NILAVRGESLLDIVHKHWATYG----RNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLIG 440
              L  +G++LLD + + +  YG    +     ++      EK +  M+  R        
Sbjct: 386 AAYLKAQGKTLLDRLDELYEKYGYYKEKTISITFEGK-EGPEKIKAIMDRLR-------- 436

Query: 441 SSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTD 488
                               N NV     +    ++ SR+  R SGT+
Sbjct: 437 -------------------NNPNV-----LTFYLEDGSRVTVRPSGTE 460


>gnl|CDD|145829 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
           alpha/beta/alpha domain III. 
          Length = 111

 Score =  105 bits (266), Expect = 2e-23
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 293 PSDSLAIMVANA--GLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN 350
             D +  ++A     L PG       V +++ +S ALDRVAE+L  +L  T  G K+   
Sbjct: 1   DGDQILALLARYLLELKPG------AVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKE 54

Query: 351 LLENGMITICGEESFGTGS--NHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATY 406
            +      + GEES G     + +  KDGI + L  L +LA  G+SL +++ +    Y
Sbjct: 55  KMREEGAVLGGEES-GHIIFLDFATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111


>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
           (phosphoglucomutase-like) protein of unknown function
           belongs to the alpha-D-phosphohexomutase superfamily
           which includes several related enzymes that catalyze a
           reversible intramolecular phosphoryl transfer on their
           sugar substrates. The alpha-D-phosphohexomutases include
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Members of this superfamily include the
           phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 439

 Score =  104 bits (262), Expect = 6e-23
 Identities = 116/520 (22%), Positives = 200/520 (38%), Gaps = 100/520 (19%)

Query: 17  GTSGLRKKVSVFQQNSYTENFI----QAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKI 72
           GTSG+R  V        T        +A+         T+VVG D R    ++   +I  
Sbjct: 3   GTSGIRGVVGEE----LTPELALKVGKAL--GTYLGGGTVVVGRDTRTSGPMLKNAVIAG 56

Query: 73  AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSG- 131
             + G   +I    GI+ TPA+ + +RK     G+++TASHNP    +  GIK     G 
Sbjct: 57  LLSAG-CDVI--DIGIVPTPALQYAVRKL-GDAGVMITASHNPP---EYNGIKLVNPDGT 109

Query: 132 --GSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALME 189
                 E++ E+I    +            V  + +G+             I+ Y+  + 
Sbjct: 110 EFSREQEEEIEEIIFSER---------FRRVAWDEVGS------VRREDSAIDEYIEAIL 154

Query: 190 NIFDFDAIRKLLSFGFRIDIDCMN---AVTGPYAKEILERKLGAPTGSVRNFIPLEDFGG 246
           +  D D  +     G ++ +DC N   ++T PY   +L R+LG    ++ N  P   F G
Sbjct: 155 DKVDIDGGK-----GLKVVVDCGNGAGSLTTPY---LL-RELGCKVITL-NANPDGFFPG 204

Query: 247 CHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAIMVANAG 305
             P+P   +  +L   ++    AD G A DGD DR++ +  KG F++    LA++   A 
Sbjct: 205 RPPEPTPENLSEL-MELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALL---AK 260

Query: 306 LIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITICGEES- 364
            +     G V        S  ++ V E+   ++  TP G       +        GE + 
Sbjct: 261 YLLEEGGGKVVTPVD--ASMLVEDVVEEAGGEVIRTPVGDVHVAEEMIENGAVFGGEPNG 318

Query: 365 ---FGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIPT 421
              F     H   +DGI +    L +LA   + L +++        + Y    + +  P 
Sbjct: 319 GWIFPD---HQLCRDGIMTAALLLELLA-EEKPLSELL----DELPK-YPLLREKVECPD 369

Query: 422 EKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRII 481
           EK ++ M      L +               D    D          G+R+ +++   ++
Sbjct: 370 EKKEEVMEAVEEELSDAD------------EDVDTID----------GVRIEYED-GWVL 406

Query: 482 YRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
            R SG  TE   +R+     E  + +  K   E+L +   
Sbjct: 407 IRPSG--TEP-KIRITA---EAKTEERAK---ELLEEGRS 437


>gnl|CDD|36434 KOG1220, KOG1220, KOG1220, Phosphoglucomutase/phosphomannomutase
           [Carbohydrate transport and metabolism].
          Length = 607

 Score =  102 bits (256), Expect = 2e-22
 Identities = 118/555 (21%), Positives = 212/555 (38%), Gaps = 71/555 (12%)

Query: 17  GTSGLRKK-VSVFQQ------NSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKI 69
           GT+GLR +  + F +        + +     + N        +V+G DGR+ +    + +
Sbjct: 63  GTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELV 122

Query: 70  IKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTS 129
             +   NGF   +  +  ++ TP V   +    A  GI++TASHNP    +D G K   S
Sbjct: 123 AAVFLLNGFKVYLFSE--LVPTPFVPFAVLTLGADAGIMITASHNPK---EDNGYKVYWS 177

Query: 130 SGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP--IENYVAL 187
           +G        E I  +S +      + + D  +  + +  L +  ++VI P   E Y  L
Sbjct: 178 NGAQIISPHDEKI-SDSIEANLEPRLSSWDDSL--VKSHPLLHDILAVIIPPYFEVYKEL 234

Query: 188 MENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNF-IPLEDFGG 246
           +               G +      + V G + K+ LE+       SV     P   F  
Sbjct: 235 LPCFHREANPLS----GLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPT 290

Query: 247 CH-PDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRS----MILGKGIFVNPSDSLAIMV 301
              P+P    A DL  +  + +SAD   A D D DR      + G+    N ++  A++ 
Sbjct: 291 VPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLS 350

Query: 302 A-------NAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNN---- 350
                    +  +       V +  S  +S     +AE       ET TG+K+  N    
Sbjct: 351 WWVLEEHKGSTPVQD-----VSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIE 405

Query: 351 LLENGMITICG-EESFG--TGSNHSREKDGIWSILFWLNILA----VRGESLLDIVHKHW 403
           L ++G       EES G   G NH  +KDG+ + + + ++          SL +++   +
Sbjct: 406 LEKDGKEVHFAFEESIGYMFGENH-LDKDGVSAAVKFASMACRLRLAGNLSLSEVLEDLY 464

Query: 404 ATYGRNYYSRYD--YLGIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTN 461
             YG  Y+S  +   L I  E  +   +  R      I    IG++ +       T   +
Sbjct: 465 ERYG--YHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYD 522

Query: 462 GNVSDK----------QGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKN 511
            +  D           Q +   F+N   +  R SGT+ +   +++YI+   P  +   K+
Sbjct: 523 VSSPDHKAVLPVSTSSQMVTFTFNNGGVVTLRTSGTEPK---IKLYIEACLPPDA---KS 576

Query: 512 TQEMLSDLVEVSQRI 526
            + ++      +  +
Sbjct: 577 WERLIKLANLTTSAV 591


>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
           (PMM/PGM) bifunctional enzyme catalyzes the reversible
           conversion of 1-phospho to 6-phospho-sugars (e.g.
           between mannose-1-phosphate and mannose-6-phosphate or
           glucose-1-phosphate and glucose-6-phosphate) via a
           bisphosphorylated sugar intermediate. The reaction
           involves two phosphoryl transfers, with an intervening
           180 degree reorientation of the reaction intermediate
           during catalysis. Reorientation of the intermediate
           occurs without dissociation from the active site of the
           enzyme and is thus, a simple example of processivity, as
           defined by multiple rounds of catalysis without release
           of substrate. Glucose-6-phosphate and
           glucose-1-phosphate are known to be utilized for energy
           metabolism and cell surface construction, respectively.
           PMM/PGM belongs to the alpha-D-phosphohexomutase
           superfamily which includes several related enzymes that
           catalyze a reversible intramolecular phosphoryl transfer
           on their sugar substrates. Other members of this
           superfamily include phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the
           phosphoglucomutases (PGM1 and PGM2). Each of these
           enzymes has four domains with a centrally located active
           site formed by four loops, one from each domain. All
           four domains are included in this alignment model..
          Length = 443

 Score = 95.7 bits (239), Expect = 3e-20
 Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 52/265 (19%)

Query: 49  EKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKG------GILSTPAVSHLIRKYK 102
            K +VVG DGR  +        ++AAA      ++  G      G++ TP +        
Sbjct: 36  AKKVVVGRDGRLSSP-------ELAAA--LIEGLLAAGCDVIDIGLVPTPVLYFATFHLD 86

Query: 103 ASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDI 162
           A GG+++TASHNP    +  G K     GG  S +  + +          +  E  D   
Sbjct: 87  ADGGVMITASHNPP---EYNGFKI-VIGGGPLSGEDIQAL---------RERAEKGDF-- 131

Query: 163 NHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKE 222
                      ++  +D + +Y+  + +        KL     ++ +D  N   GP A +
Sbjct: 132 ----AAATGRGSVEKVDILPDYIDRLLSDI------KLGKRPLKVVVDAGNGAAGPIAPQ 181

Query: 223 ILERKLGAPTGSVRNFIPLEDFGGCHPDP----NLIHAKDLYDRMMMHDSADFGAACDGD 278
           +LE  LG     +    P   F   HPDP    NL   +DL   +  +  AD G A DGD
Sbjct: 182 LLEA-LGCEVIPL-FCEPDGTFPNHHPDPTDPENL---EDLIAAVKENG-ADLGIAFDGD 235

Query: 279 GDRSMIL-GKGIFVNPSDSLAIMVA 302
           GDR  ++  KG  +   D L  + A
Sbjct: 236 GDRLGVVDEKGEIIWG-DRLLALFA 259


>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
           is located C-terminal to a mannose-1-phosphate
           guanyltransferase domain in a protein of unknown
           function that is found in both prokaryotes and
           eukaryotes. This domain belongs to the
           alpha-D-phosphohexomutase superfamily which includes
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Members of this superfamily include the
           phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 445

 Score = 90.4 bits (225), Expect = 1e-18
 Identities = 84/355 (23%), Positives = 124/355 (34%), Gaps = 81/355 (22%)

Query: 19  SGLRKKVSVFQQNSYTENFIQAI--FNNVDCAEKTLVVGGDGR----FYNHIVIQKIIKI 72
           SG+R  V           ++ A   +         +VVG DGR        IVI      
Sbjct: 5   SGIRGIVGEGLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVI------ 58

Query: 73  AAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPA--------GATQDFGI 124
            A       +I   GI  TP V  L+R+ +ASGGII+TASHNP         G     G 
Sbjct: 59  GALLACGCDVI-DLGIAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPD---GE 114

Query: 125 KYNTSSGG---SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPI 181
                 G    S +E  +       +        +A    I+ +       + +  +D I
Sbjct: 115 FLTPDEGEEVLSCAEAGSAQKAGYDQLGEVTFSEDAIAEHIDKV-------LALVDVDVI 167

Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241
                          IR+     F++ +D +N   G     +LE KLG         I L
Sbjct: 168 --------------KIRER---NFKVAVDSVNGAGGLLIPRLLE-KLGC------EVIVL 203

Query: 242 EDFGGCHPDPNLIH-----AKDLYD--RMMMHDSADFGAACDGDGDRSMILG-KGIFVNP 293
                C P     H      ++L      +    AD G A D D DR  ++   G  +  
Sbjct: 204 ----NCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGE 259

Query: 294 SDSLAIMVANAGLIPGYATGLVG----VARSMPTSAALDRVAEKLNLKLFETPTG 344
             +LA+ V        Y     G    V  ++ TS AL+ +A K  + +F +  G
Sbjct: 260 EYTLALAVD-------YVLKYGGRKGPVVVNLSTSRALEDIARKHGVPVFRSAVG 307


>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
           that belongs to the alpha-D-phosphohexomutase
           superfamily. It is required for the interconversion of
           glucosamine-6-phosphate and glucosamine-1-phosphate in
           the biosynthetic pathway of UDP-N-acetylglucosamine, an
           essential precursor to components of the cell envelope. 
           In order to be active, GlmM must be phosphorylated,
           which can occur via autophosphorylation or by the
           Ser/Thr kinase StkP. GlmM functions in a classical
           ping-pong bi-bi mechanism with
           glucosamine-1,6-diphosphate as an intermediate.  Other
           members of the alpha-D-phosphohexomutase superfamily
           include phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphomannomutase ManB, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 434

 Score = 87.9 bits (219), Expect = 6e-18
 Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 65/329 (19%)

Query: 87  GILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSAS---EQQTEDIF 143
           G++ TPAV++L RK +A  G++++ASHNP    +D GIK+ +S G       E++ E + 
Sbjct: 72  GVIPTPAVAYLTRKLRADAGVVISASHNPF---EDNGIKFFSSDGYKLPDEVEEEIEALI 128

Query: 144 EESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSF 203
           ++                   IG          + D    Y+  +++ F  D    LLS 
Sbjct: 129 DK---------ELELPPTGEKIGR------VYRIDDARGRYIEFLKSTFPKD----LLS- 168

Query: 204 GFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPLEDFGGCHPDPNLI-------HA 256
           G +I +DC N      A E+  R+LGA        I +       PD   I       H 
Sbjct: 169 GLKIVLDCANGAAYKVAPEVF-RELGA------EVIVI----NNAPDGLNINVNCGSTHP 217

Query: 257 KDLYDRMMMHDSADFGAACDGDGDRSMIL-GKGIFVNPSDSLAI----MVANAGLIPGYA 311
           + L  + ++ + AD G A DGD DR + +  KG  V+    LAI    +     L     
Sbjct: 218 ESL-QKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGN-- 274

Query: 312 TGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKF-FNNLLENGMITICGEESFGTG-- 368
             +VG    M ++  L++  ++L +KL  T  G ++    +L++G   + GE+S   G  
Sbjct: 275 -TVVGT--VM-SNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHG-ANLGGEQS---GHI 326

Query: 369 --SNHSREKDGIWSILFWLNILAVRGESL 395
              +HS   DG+ + L  L I+   G+SL
Sbjct: 327 IFLDHSTTGDGLLTALQLLAIMKRSGKSL 355


>gnl|CDD|145828 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
           alpha/beta/alpha domain II. 
          Length = 103

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 182 ENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIPL 241
           + Y+  + + FD +A++K    G ++  D ++ V G    E+L+R LGA      N  P 
Sbjct: 1   DAYIDRLASAFDLEALKKR---GLKVVYDPLHGVGGEILPELLKR-LGAEVVEE-NCEPD 55

Query: 242 EDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMI 284
            DF    P+P    A +L   ++    AD G A DGD DR  +
Sbjct: 56  GDFPTKAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGV 98


>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
           guanyltransferase (MPG1 transferase), also known as
           GDP-mannose pyrophosphorylase, is a bifunctional enzyme
           with both phosphomannose isomerase (PMI) activity and
           GDP-mannose phosphorylase (GMP) activity.  The protein
           contains an N-terminal NTP transferase domain, an
           L-beta-H domain, and a C-terminal PGM-like domain that
           belongs to the alpha-D-phosphohexomutase superfamily.
           This subfamily is limited to bacteria and archaea. The
           alpha-D-phosphohexomutases include several related
           enzymes that catalyze a reversible intramolecular
           phosphoryl transfer on their sugar substrates. Members
           of this group appear to lack conserved residues
           necessary for metal binding and catalytic activity.
           Other members of this superfamily include the
           phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 441

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 76/349 (21%), Positives = 132/349 (37%), Gaps = 59/349 (16%)

Query: 73  AAANGFARIIIGKGGILST------------PAVSHLIRKYKASGGIILTASHNPAGATQ 120
            A+    R +I   G+LST            P   + IR   ASGGI +  S +     +
Sbjct: 45  RASRMLKRALIS--GLLSTGVNVRDLGALPLPVARYAIRFLGASGGIHVRTSPDDPDKVE 102

Query: 121 DFGIKYNTSSG---GSASEQQTEDIF--EESKKITSYQIIEANDVDINHIGTKELANMTI 175
              I++  S G     A E++ E+ F  E+ ++    +I      DI             
Sbjct: 103 ---IEFFDSRGLNISRAMERKIENAFFREDFRRAHVDEI-----GDITEP---------- 144

Query: 176 SVIDPIENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSV 235
              D +E Y+  +    D   ++K    G ++ ID    V G     +L R LG     V
Sbjct: 145 --PDFVEYYIRGLLRALDTSGLKK---SGLKVVIDYAYGVAGIVLPGLLSR-LGC--DVV 196

Query: 236 RNFIPLEDFGGCHPDPNLIH-AKDLYDRMMMHDSADFGAACDGDGDR-SMILGKGIFVNP 293
                L++             + D   R++    ADFG   D +G+R  ++   G  ++ 
Sbjct: 197 ILNARLDE--DAPRTDTERQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISD 254

Query: 294 SDSLAIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFF-NNLL 352
            D L  +V+   L+   +     V   +   + ++++AE+   ++  T T  +      L
Sbjct: 255 -DLLTALVS---LLVLKSEPGGTVVVPVTAPSVIEQLAERYGGRVIRTKTSPQALMEAAL 310

Query: 353 ENGMITICGEESFG--TGSNHSREKDGIWSILFWLNILAVRGESLLDIV 399
           EN ++   G+  F            D I +++  L +LA    SL  IV
Sbjct: 311 ENVVLAGDGDGGFIFPEFHPGF---DAIAALVKILEMLARTNISLSQIV 356


>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
           catalyzes the conversion of mannose 6-phosphate to
           mannose-1-phosphate in the second of three steps in the
           GDP-mannose pathway, in which GDP-D-mannose is
           synthesized from fructose-6-phosphate. In Mycobacterium
           tuberculosis, the causative agent of tuberculosis, PMM
           is involved in the biosynthesis of mannosylated
           lipoglycans that participate in the association of
           mycobacteria with host macrophage phagocytic receptors.
           ManB belongs to the the alpha-D-phosphohexomutase
           superfamily which includes several related enzymes that
           catalyze a reversible intramolecular phosphoryl transfer
           on their sugar substrates. Other members of this
           superfamily include the phosphoglucomutases (PGM1 and
           PGM2), phosphoglucosamine mutase (PNGM),
           phosphoacetylglucosamine mutase (PAGM), the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 459

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 73/300 (24%), Positives = 108/300 (36%), Gaps = 53/300 (17%)

Query: 17  GTSGLRKKVSVFQQN---SYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIA 73
           GTSGLR  V+        +YT  F+Q + +       T+ VG D R  +  +        
Sbjct: 3   GTSGLRGLVTDLTDEVCYAYTRAFLQHLESKF--PGDTVAVGRDLRPSSPRIAAACAAAL 60

Query: 74  AANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDF-GIKYNTSSGG 132
              GF  +     G + TPA++    K  A   I++T SH PA    D  G+K+    G 
Sbjct: 61  RDAGFRVVDC---GAVPTPALALYAMKRGA-PAIMVTGSHIPA----DRNGLKFYRPDG- 111

Query: 133 SASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIF 192
                      E +K       I A  V++          +     D  + Y+A   + F
Sbjct: 112 -----------EITK--ADEAAILAALVELPEALFDPAGALLPPDTDAADAYIARYTDFF 158

Query: 193 DFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGA---PTGSVRNFIPL--EDFGGC 247
              A    L  G RI +   ++V       ILE  LGA   P G    FIP+  E     
Sbjct: 159 GAGA----LK-GLRIGVYQHSSVGRDLLVRILE-ALGAEVVPLGRSDTFIPVDTE----A 208

Query: 248 HPDPNLIHAKDLYDRMMMHDSADFGA--ACDGDGDRSMILG-KGIFVNPSDSLAIMVANA 304
               +   A                A  + DGDGDR ++    G ++   D L ++ A  
Sbjct: 209 VRPEDRALAAAWA------AEHGLDAIVSTDGDGDRPLVADETGEWL-RGDILGLLTARF 261



 Score = 29.1 bits (66), Expect = 3.5
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 418 GIPTEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNH 477
             PTEK+Q  +     RL               A  F        ++    G+R+ F N 
Sbjct: 378 NFPTEKSQALIA----RLSA--DPEAR------AAFFFALGGEVASIDTTDGLRMTFANG 425

Query: 478 SRIIYRISGTDTENSTLRVYI 498
             +  R SG   E   LR Y+
Sbjct: 426 DIVHLRPSGNAPE---LRCYV 443


>gnl|CDD|39814 KOG4614, KOG4614, KOG4614, Inner membrane protein required for
           assembly of the F0 sector of ATP synthase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 287

 Score = 37.4 bits (86), Expect = 0.011
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 146 SKKITSYQIIEANDVDINHIGTKELANMTISVIDPIENYVALMENIFDFDAIRKLLSFGF 205
           S+ + S   +E+          K+L    +S ID     +A+++  F+F+      +F F
Sbjct: 184 SQNMISSWFLESF------GNRKDLQLFEVSFIDKWLLGLAVLQKPFNFENSVLQWAFYF 237

Query: 206 RIDIDCMNAVTG 217
           R +I   N +TG
Sbjct: 238 RKEIKVNNLLTG 249


>gnl|CDD|144122 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
           C-terminal domain. 
          Length = 71

 Score = 36.5 bits (85), Expect = 0.021
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 467 KQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVE 521
            + ++++F++  R++ R SGT+     LRVY+   E D    L+     +++L++
Sbjct: 23  AEALKILFEDGRRLVVRPSGTEPV---LRVYV---EADDEAELEEIAAEVAELLK 71


>gnl|CDD|38950 KOG3746, KOG3746, KOG3746, Uncharacterized conserved protein
           [Function unknown].
          Length = 553

 Score = 30.8 bits (69), Expect = 0.91
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 399 VHKHWATYGRNYYSRYDYLGIPTEKAQDFMNDFRYRLKNLI---GSSFIGQKIKQAGDFV 455
           +H    T+G   + R      PT + QD+  D  Y L N +       + +K   A    
Sbjct: 388 IHFEDRTFGYIDFRRRGEKDPPTFRVQDYGWDHGYSLMNRLYPTLGQLLDEKFDHAYTLT 447

Query: 456 YTDSTNGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYID 499
           Y  +   N  D   +R    N+   ++ I   D +   +   +D
Sbjct: 448 YNTAAMHNEVDTSALRRAIWNYIHCLFGIRYDDYDYGEINQLLD 491


>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
           (phosphoacetylglucosamine mutase) and AGM1
           (N-acetylglucosamine-phosphate mutase), is an essential
           enzyme found in eukaryotes that reversibly catalyzes the
           conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
           as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
           biosynthetic pathway. UDP-GlcNAc is an essential
           metabolite that serves as the biosynthetic precursor of
           many glycoproteins and mucopolysaccharides. AGM1 is a
           member of the alpha-D-phosphohexomutase superfamily,
           which catalyzes the intramolecular phosphoryl transfer
           of sugar substrates. The alpha-D-phosphohexomutases have
           four domains with a centrally located active site formed
           by four loops, one from each domain. All four domains
           are included in this alignment model..
          Length = 513

 Score = 30.3 bits (69), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 3/20 (15%)

Query: 106 GIILTASHNPAGATQDFGIK 125
           G+++TASHNP    +D G+K
Sbjct: 38  GVMITASHNPV---EDNGVK 54


>gnl|CDD|145670 pfam02634, FdhD-NarQ, FdhD/NarQ family.  Nitrate assimilation
           protein, NarQ, and FdhD are required for formate
           dehydrogenase activity.
          Length = 235

 Score = 30.2 bits (69), Expect = 1.7
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 55/180 (30%)

Query: 204 GFRIDIDCMNA-VTGPYAKEILERKLGAPTGSV-----RNFIPLEDFGGCHPDPNL-IHA 256
              +D D  +  V        LER+L   TG+        F+            +  + A
Sbjct: 47  SIEVDEDEGSVEVRTRAGALKLERRLLKRTGTSGCGCGVEFLEDALLRAIPLLSDARLDA 106

Query: 257 KDLYDRM--MMHDSADF-------GAA-CDGDG---------------DRSMILGKGIF- 290
           + ++  M  +      +        AA  D DG               D+  ++G  +  
Sbjct: 107 ETIFALMEALNEHQELYRETGGVHAAALFDADGEILAFREDVGRHNALDK--LIGAALLA 164

Query: 291 -VNPSDSLAI--------MV---ANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKL 338
            ++ SD + +        MV   A AG IP      V V+RS PTS A++ +AE+L + L
Sbjct: 165 GIDLSDKILLVTGRLSSEMVQKAARAG-IP------VLVSRSAPTSLAVE-LAEELGITL 216


>gnl|CDD|38080 KOG2869, KOG2869, KOG2869, Meiotic cell division protein
           Pelota/DOM34 [Translation, ribosomal structure and
           biogenesis].
          Length = 379

 Score = 29.1 bits (65), Expect = 3.2
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 27/130 (20%)

Query: 2   LCTIVPTVPYQDQKPGTSGLRKK---VSVFQQ--NSYTENFIQAIFNNVDCAE-KTLVVG 55
           +C +  +      K   S  RK+   VS  ++    + EN +QAI  +V+    K +VV 
Sbjct: 149 ICLVTKSSTILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVA 208

Query: 56  GDG----RFYNHIVIQ--------------KIIKIAAANGFARIIIGKGGILSTPAVSHL 97
             G    +F +++  Q              K   + A++G+   +     +L  PAV+  
Sbjct: 209 SPGFVKDQFMDYLFQQAVKLDLKLILENKSKFPLVHASSGYKHSL---NEVLKDPAVASK 265

Query: 98  IRKYKASGGI 107
           ++  KA+  +
Sbjct: 266 LQDTKAAKEV 275


>gnl|CDD|36327 KOG1111, KOG1111, KOG1111, N-acetylglucosaminyltransferase complex,
           subunit PIG-A/SPT14, required for phosphatidylinositol
           biosynthesis/Sulfolipid synthase [Cell
           wall/membrane/envelope biogenesis, Posttranslational
           modification, protein turnover, chaperones, Lipid
           transport and metabolism].
          Length = 426

 Score = 28.7 bits (64), Expect = 4.7
 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 251 PNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDS----LAIMVANAGL 306
           P  I  +++ +++ + D          D  R +++   IF+N S +    + I+ A +  
Sbjct: 236 PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295

Query: 307 IPGYATGLVGVARSMPTSAAL------DRVAEKLNLKLFETPTGWKFFNNLLEN 354
           +P  +T + G+   +P           D +   +   + +  T    F++ ++ 
Sbjct: 296 LPVVSTRVGGIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKK 349


>gnl|CDD|34993 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer
           membrane].
          Length = 542

 Score = 28.5 bits (63), Expect = 5.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 56  GDGRFYNHIVIQKIIKIAAANGFARIIIGKGGILSTPAV--SHLIRKYKASGGIILTAS 112
           GDG   N   IQ  I   A+ G   +++  G  LS P    S+ +  + A G  +L +S
Sbjct: 92  GDGATDNTAAIQAAIDACASAGGGTVLLPAGTYLSGPLFLKSN-VTLHLAEGATLLASS 149


>gnl|CDD|33313 COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms].
          Length = 237

 Score = 28.4 bits (63), Expect = 5.9
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 402 HWATYGRNYYSRYDYLGIPTEKA-QDFMN 429
           H   YG +    Y ++GIP  K+  D  N
Sbjct: 32  HKWYYGNDVTYNYTWMGIPCIKSPSDMWN 60


>gnl|CDD|35676 KOG0455, KOG0455, KOG0455, Homoserine dehydrogenase [Amino acid
           transport and metabolism].
          Length = 364

 Score = 27.7 bits (61), Expect = 8.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 11  YQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVG 55
             D KPGT      V   ++  YTE   +   N +D A K  ++ 
Sbjct: 187 LSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILA 231


>gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase.
           The Argininosuccinate synthase is a urea cycle enzyme
           that catalyzes the penultimate step in arginine
           biosynthesis: the ATP-dependent ligation of citrulline
           to aspartate to form argininosuccinate, AMP and
           pyrophosphate .  In humans, a defect in the AS gene
           causes citrullinemia, a genetic disease characterized by
           severe vomiting spells and mental retardation. AS is a
           homotetrameric enzyme of chains of about 400 amino-acid
           residues. An arginine seems to be important for the
           enzyme's catalytic mechanism. The sequences of AS from
           various prokaryotes, archaebacteria and eukaryotes show
           significant similarity.
          Length = 385

 Score = 27.8 bits (62), Expect = 8.2
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 49  EKTLVVGGDGRFYNHI-VIQKIIKIAAANGFARI------IIG-KG-GILSTPAVSHLIR 99
           EK + V  +G   + + +I ++ +IA  +G  RI      +IG K   +   P  + LI+
Sbjct: 220 EKGVPVALNGEKLDPVELILELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIK 279

Query: 100 KYKASGGIILT 110
            ++    + L 
Sbjct: 280 AHRDLESLTLD 290


>gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
           aminotransferase [Coenzyme metabolism].
          Length = 449

 Score = 27.8 bits (62), Expect = 8.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 314 LVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMIT 358
           LVG  R +    A++ VA+K     FE   G +     LE G++ 
Sbjct: 366 LVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLI 410


>gnl|CDD|145176 pfam01872, RibD_C, RibD C-terminal domain.  The function of this
           domain is not known, but it is thought to be involved in
           riboflavin biosynthesis. This domain is found in the C
           terminus of RibD/RibG, in combination with pfam00383, as
           well as in isolation in some archaebacterial proteins.
           This family appears to be related to pfam00186.
          Length = 196

 Score = 27.7 bits (62), Expect = 8.5
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 461 NGNVSDKQGIRVVFDNHSRIIYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLV 520
            G  +++Q  RVV D+  R+       + +  TL    +  + +  + LK  +  L +L+
Sbjct: 64  KGRAAERQPPRVVVDSTLRVPLDARVLNDDAPTLVATTEPADKEKVEKLKVLRVDLKELL 123

Query: 521 E 521
            
Sbjct: 124 R 124


>gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase
           [Carbohydrate transport and metabolism].
          Length = 539

 Score = 27.6 bits (61), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 106 GIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137
           G+++TASHNP    +D G+K    SG   +  
Sbjct: 62  GVMITASHNP---VEDNGVKIVDPSGEMLAAS 90


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0884    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,664,892
Number of extensions: 370254
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 41
Length of query: 542
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 443
Effective length of database: 4,124,446
Effective search space: 1827129578
Effective search space used: 1827129578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)