BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus
Liberibacter asiaticus str. psy62]
(542 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/542 (100%), Positives = 542/542 (100%)
Query: 1 MLCTIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRF 60
MLCTIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRF
Sbjct: 1 MLCTIVPTVPYQDQKPGTSGLRKKVSVFQQNSYTENFIQAIFNNVDCAEKTLVVGGDGRF 60
Query: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120
YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ
Sbjct: 61 YNHIVIQKIIKIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQ 120
Query: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP 180
DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP
Sbjct: 121 DFGIKYNTSSGGSASEQQTEDIFEESKKITSYQIIEANDVDINHIGTKELANMTISVIDP 180
Query: 181 IENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIP 240
IENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIP
Sbjct: 181 IENYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPTGSVRNFIP 240
Query: 241 LEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIM 300
LEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIM
Sbjct: 241 LEDFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILGKGIFVNPSDSLAIM 300
Query: 301 VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITIC 360
VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITIC
Sbjct: 301 VANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMITIC 360
Query: 361 GEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIP 420
GEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIP
Sbjct: 361 GEESFGTGSNHSREKDGIWSILFWLNILAVRGESLLDIVHKHWATYGRNYYSRYDYLGIP 420
Query: 421 TEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRI 480
TEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRI
Sbjct: 421 TEKAQDFMNDFRYRLKNLIGSSFIGQKIKQAGDFVYTDSTNGNVSDKQGIRVVFDNHSRI 480
Query: 481 IYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSI 540
IYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSI
Sbjct: 481 IYRISGTDTENSTLRVYIDNYEPDSSKHLKNTQEMLSDLVEVSQRISCLRHYIGHTNPSI 540
Query: 541 AS 542
AS
Sbjct: 541 AS 542
>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 448
Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 155/367 (42%), Gaps = 62/367 (16%)
Query: 17 GTSGLRKKVSVFQQNSYTENFIQAIFNNV------DCAEKTLVVGGDGRFYNHIVIQKII 70
GT G+R K + F T NF+ I V + +V+G D R +++ ++
Sbjct: 7 GTDGIRGKSNTF---PITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63
Query: 71 KIAAANGFARIIIGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSS 130
A G I+G + +PAV+ L R +A G++++ASHNP QD GIK
Sbjct: 64 AGFTAAGMDAFILGP---IPSPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLFGPD 117
Query: 131 GGSAS---EQQTEDIFEESKKITSY-----QIIEANDVDINHIGTKELANMTISVIDPIE 182
G S E + E + E+ +TSY I A VD H +
Sbjct: 118 GYKVSTDIEDRIETLLEDD--LTSYLSCYDSIGHAKRVDGVH-----------------D 158
Query: 183 NYVALMENIFDFDAIRKLLSFGFRIDIDCMNAVTGPYAKEILERKLGAPT---GSVRNFI 239
Y+ ++ D + G RI +DC N + A E+ +LGA G N I
Sbjct: 159 RYIEHVKRTLPRDVTLQ----GLRIVVDCANGASYKVAPEVFW-ELGADVVVIGDKPNGI 213
Query: 240 PLE-DFGGCHPDPNLIHAKDLYDRMMMHDSADFGAACDGDGDRSMILG-KGIFVNPSDSL 297
+ D G N++ + R + AD G A DGDGDR +I+ KG VN D +
Sbjct: 214 NINLDCGST----NVLSLQ----RKVHEVRADIGIALDGDGDRVIIVDEKGAIVN-GDQI 264
Query: 298 AIMVANAGLIPGYATGLVGVARSMPTSAALDRVAEKLNLKLFETPTGWKFFNNLLENGMI 357
++A + G G+ ++ ++ L+R L L L T G ++ ++N
Sbjct: 265 MALIAREWMSHSLLRG-NGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGF 323
Query: 358 TICGEES 364
+ GE+S
Sbjct: 324 NVGGEQS 330
>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 210
Score = 30.0 bits (66), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 29 QQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGI 88
Q+ S E +I+ + + E +V D R ++ I + A II GI
Sbjct: 3 QKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIH-CTSEKMAFIIRHTCGI 61
Query: 89 LSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137
+ TP H K K + ++ S + T K+ ++G SA ++
Sbjct: 62 VCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDR 110
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 26.6 bits (57), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 246 GCHPDPNLIHAKDLYDRMMMHDSADFG---AACDGDGDRSMILGKGIF 290
GC P L+HA ++Y + ++ D G A+C D + M K I
Sbjct: 45 GCIPSKALLHASEMYSH-IAKEAGDLGINIASCHLDLKKMMSYKKSIV 91
>537021.9.peg.409_1
Length = 242
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 97 LIRKYKASGGIILTASHNPAGA-TQDFGIKYN-TSSGGSASEQQTEDIFEESKKITS--- 151
LI + GG+ + H A Q F ++ N TS A E+Q++ + EE+KK T
Sbjct: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
Query: 152 ------------YQIIE-ANDVDINHIGTKELANMT 174
Y+I+E +ND DI + + ++N T
Sbjct: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
>gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 288
Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 478 SRIIYRISGTDTENSTLRVYIDNYEPDSSKH-----LKNTQEMLSDLVEVSQRISCL 529
S++ RIS N+ ++++I +++P + ++NT+E L+ VSQ CL
Sbjct: 43 SKLFMRISFVF--NTCMKLFIADFQPIVQQFSLQYSIRNTKEATKTLILVSQPDHCL 97
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 23.9 bits (50), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 168 KELANMTISVIDPIENYVALMENIFDFDAIRKLL 201
K N + V+D E ++ ++NI D + RK++
Sbjct: 273 KGYPNFPLRVVDASERFIRKLKNIVDPETKRKVI 306
>gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 238
Score = 23.5 bits (49), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 83 IGKGGILSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNT 128
IG GGI+ +P ++R+ +I+T G+ D ++ T
Sbjct: 154 IGMGGIVCSPQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFAT 199
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,659
Number of Sequences: 1233
Number of extensions: 16474
Number of successful extensions: 51
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 10
length of query: 542
length of database: 328,796
effective HSP length: 78
effective length of query: 464
effective length of database: 232,622
effective search space: 107936608
effective search space used: 107936608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)