HHsearch alignment for GI: 254781108 and conserved domain: cd01450
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.66 E-value=6.6e-15 Score=107.81 Aligned_cols=154 Identities=19% Similarity=0.333 Sum_probs=111.2
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
T Consensus 1 ~DivfvlD~S~Sm~~~~---------------------------------------------~~~~k~~i~~~i~~~~~~ 35 (161)
T cd01450 1 LDIVFLLDGSESVGPEN---------------------------------------------FEKVKDFIEKLVEKLDIG 35 (161)
T ss_pred CEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCCCC
T ss_conf 96999997989988589---------------------------------------------999999999999970568
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 768776521346541267765431123568999999997357788--874458899999996113466666566766665
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPY--ENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~--G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~ 305 (398)
T Consensus 36 ~-----~~~rv~lv~fs~~~~~~~~l~~~~~~~~l~~~i~~l~~~~~~~t~~~~AL~~~~~~~~~~~~~r------~~~~ 104 (161)
T cd01450 36 P-----DKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGGTNTGKALQYALEQLFSESNAR------ENVP 104 (161)
T ss_pred C-----CCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC------CCCC
T ss_conf 8-----7858999995573168714656466999999998421368998548999999999986144666------6675
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 169981588778777776631489999999978988999995479755899999851998
Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG 365 (398)
Q Consensus 306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~ 365 (398)
T Consensus 105 kvivllTDG~~~~~~------~~~~~a~~lk~~gi~v~~vgiG-~-~~~~~L~~iA~~p~ 156 (161)
T cd01450 105 KVIIVLTDGRSDDGG------DPKEAAAKLKDEGIKVFVVGVG-P-ADEEELREIASCPS 156 (161)
T ss_pred EEEEEEECCCCCCCC------CHHHHHHHHHHCCCEEEEEEEC-C-CCHHHHHHHHCCCC
T ss_conf 499998258878874------7999999999889989999826-4-89999999977994