HHsearch alignment for GI: 254781108 and conserved domain: cd01455
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=95.29 E-value=0.19 Score=27.09 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHCCCC-----CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 6899999999735778-----88744588999999961134666665667666651699815887787777766314899
Q gi|254781108|r 256 SNNLNEVKSRLNKLNP-----YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQ 330 (398)
Q Consensus 256 t~~~~~~~~~I~~l~~-----~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~ 330 (398)
T Consensus 68 k~~keRl-~vl~~M~AHsQyC~sGD~Tlea~~~Ai~~l~a~~d~---------De~fVivlSDANL~R-----YgI~p~~ 132 (191)
T cd01455 68 KNNKERL-ETLKMMHAHSQFCWSGDHTVEATEFAIKELAAKEDF---------DEAIVIVLSDANLER-----YGIQPKK 132 (191)
T ss_pred CCHHHHH-HHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCC---------CCCEEEEECCCCHHH-----CCCCHHH
T ss_conf 8668999-999986312010025884489999999987530267---------760899981476443-----1889899
Q ss_pred HHHHHH-HCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 999999-78988999995479755899999851998189946989999999999998
Q gi|254781108|r 331 ICEYMR-NAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDK 386 (398)
Q Consensus 331 ~c~~~K-~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~~~ 386 (398)
T Consensus 133 l~~~l~~~p~V~a~~IfIgslg~eA~~l~~~l-P~G~~fVc~dt~~lP~il~qIfts 188 (191)
T cd01455 133 LADALAREPNVNAFVIFIGSLSDEADQLQREL-PAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred HHHHHHCCCCCCEEEEEEECHHHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 99997338776689999735167999999748-997417853653678999999887