HHsearch alignment for GI: 254781108 and conserved domain: cd01457
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.26 E-value=6.7e-05 Score=47.81 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=92.3
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220
Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398)
Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398)
T Consensus 2 ~rD~v~lIDdSgSM~~~d~~--------------------------------------~~~sRW~~a~~al~~iA~~c~~ 43 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEA--------------------------------------KERSRWEEAQESTRALARKCEE 43 (199)
T ss_pred CCCEEEEEECCCCCCCCCCC--------------------------------------CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97779999688876677678--------------------------------------8876299999999999999987
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-
Q ss_conf 2768776521346541267765431123568999999997357788874458899999996113466666566766665-
Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK- 305 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~- 305 (398)
T Consensus 44 ~D~DGId------vyfln~~~~~~~~----~~~~~V~~iF~~~~P~G~T~~g~~L~~il~~y~~r~~~-----~~~kp~g 108 (199)
T cd01457 44 YDSDGIT------VYLFSGDFRRYDN----VNSSKVDQLFAENSPDGGTNLAAVLQDALNNYFQRKEN-----GATCPEG 108 (199)
T ss_pred CCCCCCE------EEEEECCCCCCCC----CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_conf 4889987------9996277645688----89999999985589899796379999998999873200-----6899986
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 1699815887787777766314899999999-7898899999547975589999985
Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLNTLQICEYMR-NAGMKIYSVAVSAPPEGQDLLRKCT 361 (398)
Q Consensus 306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K-~~gi~IytIg~~~~~~~~~~l~~cA 361 (398)
T Consensus 109 ~~iIVITDG~p~D~~a--v~~~Ii~aa~kLd~~~qlgIqF~QVG~D~~A~~fL~~LD 163 (199)
T cd01457 109 ETFLVITDGAPDDKDA--VERVIIKASDELDADNELAISFLQIGRDPAATAFLKALD 163 (199)
T ss_pred EEEEEEECCCCCCCHH--HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 0799982799798288--999999999863440100367778559688999999858