HHsearch alignment for GI: 254781108 and conserved domain: cd01462
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.46 E-value=4.7e-12 Score=90.70 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=79.2
Q ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 34654126776543112356899999999735778887445889999999611346666656676666516998158877
Q gi|254781108|r 237 RIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN 316 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~ 316 (398)
T Consensus 38 ~~~lv~F~~~~~-~~~~~~~~~~~~~~~~i~~~~~~GGT~i~~aL~~A~~~l~~~----------~~~~~~IvlITDG~~ 106 (152)
T cd01462 38 DTYLILFDSEFQ-TKIVDKTDDLEEPVEFLSGVQLGGGTDINKALRYALELIERR----------DPRKADIVLITDGYE 106 (152)
T ss_pred EEEEEEECCCCE-EEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC----------CCCCCEEEEEECCCC
T ss_conf 099999168735-771587645999999997253689865799999999987425----------765646999826756
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC
Q ss_conf 8777776631489999999978988999995479755899999851
Q gi|254781108|r 317 SGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD 362 (398)
Q Consensus 317 ~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs 362 (398)
T Consensus 107 ~~~-----~~~~~~~~~~~~~~~~r~~~~~iG~-~~~p~~~~~~~~ 146 (152)
T cd01462 107 GGV-----SDELLREVELKRSRVARFVALALGD-HGNPGYDRISAE 146 (152)
T ss_pred CCC-----HHHHHHHHHHHHHCCEEEEEEEECC-CCCCHHHHHHHH
T ss_conf 798-----3999999999983891999999899-988278787666