HHsearch alignment for GI: 254781108 and conserved domain: cd01465
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.89 E-value=4.8e-22 Score=150.66 Aligned_cols=167 Identities=16% Similarity=0.266 Sum_probs=128.2
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
T Consensus 1 ldiv~vlD~SGSM~g~---------------------------------------------~~~~~k~a~~~~l~~l~~- 34 (170)
T cd01465 1 LNLVFVIDRSGSMDGP---------------------------------------------KLPLVKSALKLLVDQLRP- 34 (170)
T ss_pred CCEEEEEECCCCCCCC---------------------------------------------HHHHHHHHHHHHHHHCCC-
T ss_conf 9199999088688971---------------------------------------------999999999999985898-
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCC--CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 76877652134654126776543112356--8999999997357788874458899999996113466666566766665
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLS--NNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~ 305 (398)
T Consensus 35 -------~dr~~iv~F~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~G~T~~~~~l~~a~~~~~~~~~--------~~~~ 97 (170)
T cd01465 35 -------DDRLAIVTYDGAAET--VLPATPVRDKAAILAAIDRLTAGGSTAGGAGIQLGYQEAQKHFV--------PGGV 97 (170)
T ss_pred -------CCEEEEEEECCCCEE--CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--------CCCC
T ss_conf -------787999983586155--15878666799999987438989985277999999999986337--------8875
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCHHHHHHHH
Q ss_conf 169981588778777776631489999999978988999995479755899999851-998189946989999999
Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVNDSRELLESF 380 (398)
Q Consensus 306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~~~~L~~aF 380 (398)
T Consensus 98 ~~iillTDG~~~~~~~--~~~~~~~~~~~~~~~~i~i~tiGiG~-~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~f 170 (170)
T cd01465 98 NRILLATDGDFNVGET--DPDELARLVAQKRESGITLSTLGFGD-NYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred EEEEEEECCCCCCCCC--CHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCEEEECCCHHHHHHHC
T ss_conf 0699981588567988--98999999999874388624898088-7999999999975798899849999999639