HHsearch alignment for GI: 254781108 and conserved domain: cd01473

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.69  E-value=9.3e-15  Score=106.91  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=127.4

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
T Consensus         1 ~DivFllD~S~SIg~~nf~--------------------------------------------~~v~~F~~~lv~~f~--   34 (192)
T cd01473           1 YDLTLILDESASIGYSNWR--------------------------------------------KDVIPFTEKIINNLN--   34 (192)
T ss_pred             CCEEEEEECCCCCCHHHHH--------------------------------------------HHHHHHHHHHHHHCC--
T ss_conf             9789999389986667769--------------------------------------------999999999998756--


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCC--CCCCCCCCHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             76877652134654126776543--11235689999999973577----8887445889999999611346666656676
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVGN--QCTPLSNNLNEVKSRLNKLN----PYENTNTYPAMHHAYRELYNEKESSHNTIGS  301 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~~I~~l~----~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~  301 (398)
T Consensus        35 ---Ig~~~~rvgvv~yS~~~~~~~~f~~~~~~~k~~~l~~i~~l~~~~~~gg~T~tg~AL~~~~~~~~~~~g~R------  105 (192)
T cd01473          35 ---ISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRR------  105 (192)
T ss_pred             ---CCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC------
T ss_conf             ---59896199999955887401323554434899999999998731468982479999999999863467888------


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCC-----EEEECCHHHH
Q ss_conf             66651699815887787777766314899999999789889999954797558999998519981-----8994698999
Q gi|254781108|r  302 TRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQ-----FFAVNDSREL  376 (398)
Q Consensus       302 ~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~-----yy~a~~~~~L  376 (398)
T Consensus       106 ~~vpkv~IvlTDG~s~~~----~~~~~~~~a~~lr~~gV~i~avGVg~--~~~~eL~~iag~~~~~~~c~~~~~~~fd~l  179 (192)
T cd01473         106 KDAPKVTMLFTDGNDTSA----SKKELQDISLLYKEENVKLLVVGVGA--ASENKLKLLAGCDINNDNCPNVIKTEWNNL  179 (192)
T ss_pred             CCCCEEEEEEECCCCCCC----CHHHHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHHHCCCCCCCCCCEEEECCHHHH
T ss_conf             899749999956998873----16789999999998797899998063--799999998699988997757994797899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998751
Q gi|254781108|r  377 LESFDKITDKIQE  389 (398)
Q Consensus       377 ~~aF~~I~~~i~~  389 (398)
T Consensus       180 ~~i~~~l~~~vC~  192 (192)
T cd01473         180 NGISKFLTDKICD  192 (192)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999997249