HHsearch alignment for GI: 254781108 and conserved domain: cd01477
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.14 E-value=4.2e-09 Score=73.03 Aligned_cols=168 Identities=21% Similarity=0.236 Sum_probs=111.1
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102
Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398)
Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398)
T Consensus 17 nLWLDVv~VVD~S~~mt~~gl~---------------------------------------------~V~~~I~s~f~~~ 51 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLW---------------------------------------------QVRATISSLFGSS 51 (193)
T ss_pred HEEEEEEEEEECCCCCCCCCHH---------------------------------------------HHHHHHHHHHHCC
T ss_conf 2237899999678765621099---------------------------------------------9999999997135
Q ss_pred HHCCCCCC-CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CC---CCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 20276877-652134654126776543112356899999999735-77---88874458899999996113466666566
Q gi|254781108|r 225 QKAIQEKK-NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNK-LN---PYENTNTYPAMHHAYRELYNEKESSHNTI 299 (398)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~-l~---~~G~T~~~~gl~~a~~~l~~~~~~~~~~~ 299 (398)
T Consensus 52 t~iGt~~~~pr~TRVGlVTYn~~AtvvAdLn~~~S~ddl~~~i~~~l~~vsss~~SyL~~GL~aA~~~l~~~~~-----~ 126 (193)
T cd01477 52 SQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKR-----T 126 (193)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC-----C
T ss_conf 40357889987338999996787459863454565788999998875146666312799999999999983326-----6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCH--HHHHHHHHCCCCCEE
Q ss_conf 766665169981588778777776631489999999978988999995479755--899999851998189
Q gi|254781108|r 300 GSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEG--QDLLRKCTDSSGQFF 368 (398)
Q Consensus 300 ~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~--~~~l~~cAs~~~~yy 368 (398)
T Consensus 127 ~R~nykKVVIVyAs~y~~~g-----~~dp~pvA~rLK~~Gv~IiTVa~~q~~~~~~~~~L~~IAS-pg~nF 191 (193)
T cd01477 127 SRENYKKVVIVFASDYNDEG-----SNDPRPIAARLKSTGIAIITVAFTQDESSNLLDKLGKIAS-PGMNF 191 (193)
T ss_pred CCCCCCEEEEEEECCCCCCC-----CCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCC-CCCCC
T ss_conf 42486279999950246789-----8886999999987697899998268875889998887579-98887