HHsearch alignment for GI: 254781108 and conserved domain: cd01480
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.80 E-value=8.2e-18 Score=125.26 Aligned_cols=176 Identities=22% Similarity=0.230 Sum_probs=130.2
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
T Consensus 1 gpvDlvFllD~S~Sv~~~~---------------------------------------------F~~~k~Fv~~lv~~f~ 35 (186)
T cd01480 1 GPVDITFVLDSSESVGLQN---------------------------------------------FDITKNFVKRVAERFL 35 (186)
T ss_pred CCEEEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHHH
T ss_conf 9746999996889878789---------------------------------------------9999999999999985
Q ss_pred HCC-CCCCCCCEEEEEEECCCCCCCCCC-CCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 027-687765213465412677654311-2356899999999735778-8874458899999996113466666566766
Q gi|254781108|r 226 KAI-QEKKNLSVRIGTIAYNIGIVGNQC-TPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398)
Q Consensus 226 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398)
T Consensus 36 ~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~~~~~~~l~~~I~~i~y~gG~T~tg~AL~~a~~~~~~~~r--------~ 107 (186)
T cd01480 36 KDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDNLEYIGGGTFTDCALKYATEQLLEGSH--------Q 107 (186)
T ss_pred HHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC--------C
T ss_conf 30134568774389899855842798604777588999999997501358986299999999999861367--------8
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHH
Q ss_conf 665169981588778777776631489999999978988999995479755899999851998189946989999999
Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESF 380 (398)
Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF 380 (398)
T Consensus 108 ~~~kvlvliTDG~S~~~----~~~~~~~aa~~lr~~GV~ifaVGVG~-~-~~~eL~~IAs~p~~~~~~~~f~~L~~~~ 179 (186)
T cd01480 108 KENKFLLVITDGHSDGS----PDGGIEKAVNEADHLGIKIFFVAVGS-Q-NEEPLSRIACDGKSALYRENFAELLWSF 179 (186)
T ss_pred CCCEEEEEEECCCCCCC----CCHHHHHHHHHHHHCCCEEEEEEECC-C-CHHHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf 98538999845876667----40669999999998798999999474-8-8799999858997389736899870111