HHsearch alignment for GI: 254781108 and conserved domain: cd01481
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.65 E-value=1.4e-14 Score=105.78 Aligned_cols=162 Identities=14% Similarity=0.213 Sum_probs=121.3
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398)
Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398)
T Consensus 1 ~DlvFllD~S~si~~~~---------------------------------------------F~~~k~Fv~~lv~~f~i- 34 (165)
T cd01481 1 KDIVFLIDGSDNVGSGN---------------------------------------------FPAIRDFIERIVQSLDV- 34 (165)
T ss_pred CCEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHHCC-
T ss_conf 97899996889989899---------------------------------------------99999999999996046-
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7687765213465412677654311235689999999973577888--74458899999996113466666566766665
Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~ 305 (398)
T Consensus 35 ----~~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i~~~~g~~t~tg~AL~~a~~~~f~~~~g~R~---r~~v~ 107 (165)
T cd01481 35 ----GPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSQLNTGSALDYVVKNLFTKSAGSRI---EEGVP 107 (165)
T ss_pred ----CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCC---CCCCC
T ss_conf ----88862788999868647999767768999999999841045898436999999999971675678875---57998
Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC
Q ss_conf 1699815887787777766314899999999789889999954797558999998519981899469
Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVND 372 (398)
Q Consensus 306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~ 372 (398)
T Consensus 108 kvlvviTdG~s~d--------~~~~~a~~lr~~gV~i~aVGvg-~-~~~~eL~~IAs~p~~vf~~~~ 164 (165)
T cd01481 108 QFLVLITGGKSQD--------DVERPAVALKRAGIVPFAIGAR-N-ADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEEEECCCCCC--------HHHHHHHHHHHCCCEEEEEECC-C-CCHHHHHHHHCCCCCEEECCC
T ss_conf 6999984898853--------7899999999889789999689-7-999999998589877697389