HHsearch alignment for GI: 254781108 and conserved domain: cd01481

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.65  E-value=1.4e-14  Score=105.78  Aligned_cols=162  Identities=14%  Similarity=0.213  Sum_probs=121.3

Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             43135750556666667666310123310230126887654031013432201125553334100024566554102202
Q gi|254781108|r  148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA  227 (398)
Q Consensus       148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  227 (398)
T Consensus         1 ~DlvFllD~S~si~~~~---------------------------------------------F~~~k~Fv~~lv~~f~i-   34 (165)
T cd01481           1 KDIVFLIDGSDNVGSGN---------------------------------------------FPAIRDFIERIVQSLDV-   34 (165)
T ss_pred             CCEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHHCC-
T ss_conf             97899996889989899---------------------------------------------99999999999996046-


Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             7687765213465412677654311235689999999973577888--74458899999996113466666566766665
Q gi|254781108|r  228 IQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTRLK  305 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~  305 (398)
T Consensus        35 ----~~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i~~~~g~~t~tg~AL~~a~~~~f~~~~g~R~---r~~v~  107 (165)
T cd01481          35 ----GPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSQLNTGSALDYVVKNLFTKSAGSRI---EEGVP  107 (165)
T ss_pred             ----CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCC---CCCCC
T ss_conf             ----88862788999868647999767768999999999841045898436999999999971675678875---57998


Q ss_pred             EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECC
Q ss_conf             1699815887787777766314899999999789889999954797558999998519981899469
Q gi|254781108|r  306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVND  372 (398)
Q Consensus       306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~  372 (398)
T Consensus       108 kvlvviTdG~s~d--------~~~~~a~~lr~~gV~i~aVGvg-~-~~~~eL~~IAs~p~~vf~~~~  164 (165)
T cd01481         108 QFLVLITGGKSQD--------DVERPAVALKRAGIVPFAIGAR-N-ADLAELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             EEEEEEECCCCCC--------HHHHHHHHHHHCCCEEEEEECC-C-CCHHHHHHHHCCCCCEEECCC
T ss_conf             6999984898853--------7899999999889789999689-7-999999998589877697389