HHsearch alignment for GI: 254781108 and conserved domain: cd01482
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.60 E-value=8e-14 Score=101.32 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=114.4
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 31357505566666676663101233102301268876540310134322011255533341000245665541022027
Q gi|254781108|r 149 SICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAI 228 (398)
Q Consensus 149 di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 228 (398)
T Consensus 2 DlvfllD~S~Si~~~~---------------------------------------------f~~~k~fi~~lv~~f~i-- 34 (164)
T cd01482 2 DIVFLVDGSWSIGRSN---------------------------------------------FNLVRSFLSSVVEAFEI-- 34 (164)
T ss_pred CEEEEEECCCCCCHHH---------------------------------------------HHHHHHHHHHHHHHCCC--
T ss_conf 7999996989988899---------------------------------------------99999999999996476--
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 6877652134654126776543112356899999999735778-887445889999999611346666656676666516
Q gi|254781108|r 229 QEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKF 307 (398)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~ 307 (398)
T Consensus 35 ---~~~~~rvgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~f~~~~g~R-----~~~~kv 106 (164)
T cd01482 35 ---GPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTRTGKALTHVREKNFTPDAGAR-----PGVPKV 106 (164)
T ss_pred ---CCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHCCCC-----CCCCEE
T ss_conf ---888628999994475127873434699899999986402668997289999999998615002898-----888607
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECC
Q ss_conf 998158877877777663148999999997898899999547975589999985199--81899469
Q gi|254781108|r 308 VIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS--GQFFAVND 372 (398)
Q Consensus 308 iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~--~~yy~a~~ 372 (398)
T Consensus 107 lvliTDG~s~d--------~~~~~a~~lr~~gv~i~~VGVg-~-~~~~eL~~IAs~P~~~hvf~~~~ 163 (164)
T cd01482 107 VILITDGKSQD--------DVELPARVLRNLGVNVFAVGVK-D-ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred EEEECCCCCCC--------HHHHHHHHHHHCCCEEEEEECC-C-CCHHHHHHHHCCCCHHCEEECCC
T ss_conf 99960798843--------3899999999889389999788-3-78999999968985661797479