HHsearch alignment for GI: 254781108 and conserved domain: pfam05762

>pfam05762 VWA_CoxE VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA type domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.

Probab=97.16  E-value=0.011  Score=34.57  Aligned_cols=75  Identities=12%  Similarity=0.041  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999999973577--88874458899999996113466666566766665169981588778777776631489999999
Q gi|254781108|r  258 NLNEVKSRLNKLN--PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYM  335 (398)
Q Consensus       258 ~~~~~~~~I~~l~--~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~  335 (398)
T Consensus       111 d~~~al~~~~~~~~~~~GgT~ig~al~~f~~~~~~---------~~l~~~t~ViilsDg~~~~~-----~~~l~~~l~~L  176 (223)
T pfam05762       111 DPAEALLRVSARVEDWGGGTRIGAALAYFNELWTR---------PALSRGAVVVLVSDGLERGD-----SEELLAEVARL  176 (223)
T ss_pred             CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC---------CCCCCCCEEEEEECCCCCCC-----HHHHHHHHHHH
T ss_conf             99999999998603667997499999999985030---------34678867999723010388-----31899999999


Q ss_pred             HHCCCEEEEEE
Q ss_conf             97898899999
Q gi|254781108|r  336 RNAGMKIYSVA  346 (398)
Q Consensus       336 K~~gi~IytIg  346 (398)
T Consensus       177 ~~~~~rviWLN  187 (223)
T pfam05762       177 VRSARRLVWLN  187 (223)
T ss_pred             HHHCCEEEEEC
T ss_conf             98378799989