HHsearch alignment for GI: 254781108 and conserved domain: smart00187
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.82 E-value=0.033 Score=31.67 Aligned_cols=134 Identities=13% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf 311235689999999973577888744588-9999999611346666656676666516998158877------------
Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYP-AMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------ 316 (398)
Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~-gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------ 316 (398)
T Consensus 178 ~n~l~LT~d~~~F~~~V~~q~iSgNlD~PEGGfDAlmQ~avC~~~IGWR~----~arrllVf~TDa~fH~AgDGkL~GIv 253 (423)
T smart00187 178 KHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWRE----DARRLLVFSTDAGFHFAGDGKLAGIV 253 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 11123678889999998625363466887612778888875200037655----74389999837863023676244354
Q ss_pred --CCCCCCCC-----------CH-HHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHHHC-CCCCEE--EECCHHHHHH
Q ss_conf --87777766-----------31-48999999997898-8999995479755899999851-998189--9469899999
Q gi|254781108|r 317 --SGASAYQN-----------TL-NTLQICEYMRNAGM-KIYSVAVSAPPEGQDLLRKCTD-SSGQFF--AVNDSRELLE 378 (398)
Q Consensus 317 --~~~~~~~~-----------~~-~~~~~c~~~K~~gi-~IytIg~~~~~~~~~~l~~cAs-~~~~yy--~a~~~~~L~~ 378 (398)
T Consensus 254 ~PNDg~CHLd~~g~Yt~s~~~DYPSi~ql~~kl~ennI~~IFAVT~----~~~~~Y~~Ls~~ipgs~vg~L~~DSsNVv~ 329 (423)
T smart00187 254 QPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTK----KQVSLYKELSALIPGSSVGVLSEDSSNVVE 329 (423)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 3788730327888524456567887899999998539327998522----045699999875775403552457513899
Q ss_pred HHHHHHHHHHHCE
Q ss_conf 9999999875124
Q gi|254781108|r 379 SFDKITDKIQEQS 391 (398)
Q Consensus 379 aF~~I~~~i~~~r 391 (398)
T Consensus 330 LI~~aY~ki~S~V 342 (423)
T smart00187 330 LIKDAYNKISSRV 342 (423)
T ss_pred HHHHHHHHHCEEE
T ss_conf 9999998750189