HHsearch alignment for GI: 254781108 and conserved domain: smart00187

>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=96.82  E-value=0.033  Score=31.67  Aligned_cols=134  Identities=13%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC------------
Q ss_conf             311235689999999973577888744588-9999999611346666656676666516998158877------------
Q gi|254781108|r  250 NQCTPLSNNLNEVKSRLNKLNPYENTNTYP-AMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGEN------------  316 (398)
Q Consensus       250 ~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~-gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~------------  316 (398)
T Consensus       178 ~n~l~LT~d~~~F~~~V~~q~iSgNlD~PEGGfDAlmQ~avC~~~IGWR~----~arrllVf~TDa~fH~AgDGkL~GIv  253 (423)
T smart00187      178 KHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWRE----DARRLLVFSTDAGFHFAGDGKLAGIV  253 (423)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             11123678889999998625363466887612778888875200037655----74389999837863023676244354


Q ss_pred             --CCCCCCCC-----------CH-HHHHHHHHHHHCCC-EEEEEEECCCCCHHHHHHHHHC-CCCCEE--EECCHHHHHH
Q ss_conf             --87777766-----------31-48999999997898-8999995479755899999851-998189--9469899999
Q gi|254781108|r  317 --SGASAYQN-----------TL-NTLQICEYMRNAGM-KIYSVAVSAPPEGQDLLRKCTD-SSGQFF--AVNDSRELLE  378 (398)
Q Consensus       317 --~~~~~~~~-----------~~-~~~~~c~~~K~~gi-~IytIg~~~~~~~~~~l~~cAs-~~~~yy--~a~~~~~L~~  378 (398)
T Consensus       254 ~PNDg~CHLd~~g~Yt~s~~~DYPSi~ql~~kl~ennI~~IFAVT~----~~~~~Y~~Ls~~ipgs~vg~L~~DSsNVv~  329 (423)
T smart00187      254 QPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTK----KQVSLYKELSALIPGSSVGVLSEDSSNVVE  329 (423)
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf             3788730327888524456567887899999998539327998522----045699999875775403552457513899


Q ss_pred             HHHHHHHHHHHCE
Q ss_conf             9999999875124
Q gi|254781108|r  379 SFDKITDKIQEQS  391 (398)
Q Consensus       379 aF~~I~~~i~~~r  391 (398)
T Consensus       330 LI~~aY~ki~S~V  342 (423)
T smart00187      330 LIKDAYNKISSRV  342 (423)
T ss_pred             HHHHHHHHHCEEE
T ss_conf             9999998750189