HHsearch alignment of GI: 254781108 and MMDB domain: 1mjn_A_
>1mjn_A (A:) Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli}
Probab=99.55 E-value=3.3e-16 Score=115.21 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=127.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
+++|+++++|.||||... +.+..+.++..++..+.
T Consensus 1 Gp~divfliD~SgSM~~~---------------------------------------------~~~~~k~~~~~~i~~~~ 35 (179)
T 1mjn_A 1 GNVDLVFLFDGSMSLQPD---------------------------------------------EFQKILDFMKDVMKKCS 35 (179)
T ss_dssp CCEEEEEEEECBTTCCHH---------------------------------------------HHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHC
T ss_conf 976999999687998879---------------------------------------------99999999999999736
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973-5778887445889999999611346666656676666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLN-KLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~-~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398)
.. ..+...+.|..............+.......+. ...++|+|+...++..+...+....... ....
T Consensus 36 ~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-----~~~~ 103 (179)
T 1mjn_A 36 NT-------SYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA-----RPDA 103 (179)
T ss_dssp TS-------SEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTC-----CTTS
T ss_pred CC-------CCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC-----CCCC
T ss_conf 35-------56328999974115751111102678999998732335798515588999999875220189-----9998
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC--CEEEECCHHHHHHHHHH
Q ss_conf 5169981588778777776631489999999978988999995479755899999851998--18994698999999999
Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG--QFFAVNDSRELLESFDK 382 (398)
Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~--~yy~a~~~~~L~~aF~~ 382 (398)
++++|++|||+.+.... .+.+.+|+++|.||+||+| ...+..+|+.+|..++ ++|.+++.++|.++|++
T Consensus 104 ~~~ii~~TDG~~~~~~~--------~~~~~~~~~~v~v~~igiG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~l~~~~~~ 174 (179)
T 1mjn_A 104 TKVLIIITDGEATDSGN--------IDAAKDIIRYIIGIGKHFQ-TKESQETLHKFASKPASEFVKILDTFEKLKDLCTE 174 (179)
T ss_dssp EEEEEEEESSCCSSCSC--------CGGGTTSEEEEEEESGGGC-SHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHH
T ss_pred CEEEEEECCCCCCCCHH--------HHHHHCCCCCEEEEEEECC-CCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 24899980799886367--------9998387353599985057-40279999998579986529986998999999999
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254781108|r 383 ITDKI 387 (398)
Q Consensus 383 I~~~i 387 (398)
|.++|
T Consensus 175 i~~~i 179 (179)
T 1mjn_A 175 LQKKI 179 (179)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 97039