Query gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 398 No_of_seqs 141 out of 1170 Neff 10.5 Searched_HMMs 33803 Date Wed Jun 1 21:52:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781108.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ww8_A RRGA, cell WALL surfac 100.0 2.2E-29 6.5E-34 194.3 8.3 189 145-389 2-269 (269) 2 >3hrz_D Complement factor B; s 99.8 1.6E-18 4.7E-23 129.2 14.1 196 143-391 41-253 (259) 3 >3gxb_A VON willebrand factor; 99.7 4E-17 1.2E-21 120.8 13.3 178 147-394 2-181 (184) 4 >1rrk_A Complement factor B; B 99.7 1.9E-17 5.5E-22 122.7 11.5 193 148-393 2-211 (214) 5 >2odp_A Complement C2; C3/C5 c 99.7 4.8E-17 1.4E-21 120.3 10.0 197 144-390 6-216 (224) 6 >1q0p_A Complement factor B; V 99.7 2.8E-16 8.4E-21 115.6 12.7 195 143-390 11-222 (223) 7 >1shu_X Anthrax toxin receptor 99.7 5.6E-16 1.7E-20 113.9 13.4 177 145-388 4-182 (182) 8 >1ijb_A VON willebrand factor; 99.7 8.6E-15 2.5E-19 106.7 18.4 188 142-391 8-199 (202) 9 >1jey_A KU70; double-strand DN 99.6 3.8E-16 1.1E-20 114.9 7.3 191 145-388 33-251 (252) 10 >3ibs_A Conserved hypothetical 99.6 5.4E-14 1.6E-18 102.0 16.4 180 143-390 7-215 (218) 11 >1atz_A VON willebrand factor; 99.6 1.4E-14 4.1E-19 105.5 13.3 179 146-388 4-184 (189) 12 >1pt6_A Integrin alpha-1; X-RA 99.6 2.2E-14 6.6E-19 104.3 13.7 187 144-391 4-200 (213) 13 >2b2x_A Integrin alpha-1; comp 99.6 3.7E-14 1.1E-18 103.0 13.6 187 143-392 18-216 (223) 14 >1v7p_C Integrin alpha-2; snak 99.6 7.3E-14 2.2E-18 101.2 14.5 185 144-391 3-199 (200) 15 >1mjn_A Integrin alpha-L; ross 99.5 3.3E-16 9.9E-21 115.2 -0.7 176 146-387 1-179 (179) 16 >1n3y_A Integrin alpha-X; alph 99.5 9E-14 2.7E-18 100.6 10.3 185 144-390 6-196 (198) 17 >1jey_B KU80; double-strand DN 99.5 1.7E-12 5.1E-17 92.9 15.8 186 147-387 7-215 (279) 18 >1mf7_A Integrin alpha M; cell 99.5 2.2E-13 6.5E-18 98.3 10.5 184 145-390 3-192 (194) 19 >3k6s_A Integrin alpha-X; hete 99.5 1.3E-14 3.8E-19 105.7 3.4 182 145-388 4-191 (191) 20 >2vdr_B Integrin beta-3; cell 99.4 3.6E-14 1.1E-18 103.0 2.9 190 147-394 2-223 (242) 21 >2iue_A Pactolus I-domain; mem 99.3 1.6E-12 4.7E-17 93.2 6.0 189 146-395 2-194 (212) 22 >1yvr_A RO autoantigen, 60-kDa 99.3 2.8E-10 8.2E-15 79.7 13.7 140 145-351 2-141 (174) 23 >2nvo_A RO sixty-related prote 99.2 4.1E-10 1.2E-14 78.7 13.2 175 143-389 12-186 (189) 24 >3fcs_B Integrin beta-3; beta 99.1 2.4E-11 7.1E-16 86.1 3.3 65 251-319 84-149 (244) 25 >3k6s_B Integrin beta-2; heter 99.1 6E-11 1.8E-15 83.7 5.3 113 251-370 83-221 (241) 26 >3efo_B SEC24 related gene fam 90.1 1 3.1E-05 22.3 10.5 113 250-373 92-232 (251) 27 >3lft_A Uncharacterized protei 87.3 1.6 4.7E-05 21.1 8.6 86 302-394 14-99 (118) 28 >3eh1_A Protein transport prot 86.8 1.7 5.1E-05 21.0 16.7 126 250-388 86-244 (245) 29 >2gb3_A Aspartate aminotransfe 70.5 4 0.00012 18.8 3.0 24 329-352 32-55 (173) 30 >1qqg_A IRS-1, insulin recepto 56.3 8.8 0.00026 16.7 2.6 37 358-394 91-128 (131) 31 >2w8t_A SPT, serine palmitoylt 38.1 2.9 8.7E-05 19.5 -2.2 65 326-393 75-139 (145) 32 >1m2v_B SEC24, protein transpo 34.9 24 0.0007 14.1 14.4 110 250-372 94-231 (253) 33 >2pnf_A 3-oxoacyl-[acyl-carrie 34.5 24 0.00071 14.1 6.8 55 330-386 170-231 (248) 34 >3gk3_A Acetoacetyl-COA reduct 34.4 24 0.00071 14.1 7.6 16 333-348 191-206 (269) 35 >2c07_A 3-oxoacyl-(acyl-carrie 28.2 31 0.00091 13.4 7.7 78 306-384 173-265 (285) 36 >3ftp_A 3-oxoacyl-[acyl-carrie 28.0 31 0.00092 13.4 6.9 78 306-385 157-250 (270) 37 >2jah_A Clavulanic acid dehydr 25.6 34 0.001 13.1 8.9 57 328-386 166-230 (247) 38 >2fqx_A Membrane lipoprotein T 25.6 34 0.001 13.1 7.8 85 304-391 4-88 (147) 39 >1vbk_A Hypothetical protein P 25.0 35 0.001 13.1 6.2 44 304-359 7-50 (119) 40 >1zk4_A R-specific alcohol deh 24.2 36 0.0011 13.0 8.0 79 306-385 135-231 (251) 41 >1kjn_A MTH0777; hypotethical 23.6 38 0.0011 12.9 5.7 48 337-384 101-153 (157) 42 >3cxt_A Dehydrogenase with dif 21.5 41 0.0012 12.7 7.1 43 306-348 163-214 (291) 43 >1pcx_A Protein transport prot 20.6 43 0.0013 12.5 14.8 125 251-388 95-252 (255) No 1 >>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Probab=99.96 E-value=2.2e-29 Score=194.31 Aligned_cols=189 Identities=14% Similarity=0.217 Sum_probs=141.9 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) +.++++++|||.|+||...... ...+++..+.+...++..+ T Consensus 2 ~~~~~i~~viD~S~SM~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~ 42 (269) T 2ww8_A 2 SVPLDVVILLDNSNSMSNIRNK---------------------------------------NARRAERAGEATRSLIDKI 42 (269) T ss_dssp TCCEEEEEEEECCGGGCTTHHH---------------------------------------HCCHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCCCCC---------------------------------------CCEEEEECCCCEEEEEEEE T ss_conf 2245579996146630001346---------------------------------------5305652264504642577 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCC------------CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 20276877652134654126776543------------112356899999999735778887445889999999611346 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGN------------QCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEK 292 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~ 292 (398) ...+. .+.+++.|.+..... .+.+++.+...++..++.+.++|||+++.||+|+++.+.+.+ T Consensus 43 ~~~~~------~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~GgT~~~~AL~~a~~~l~~~~ 116 (269) T 2ww8_A 43 TSDSE------NRVALVTYASTIDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQA 116 (269) T ss_dssp HTSTT------CEEEEEEESSSBBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHS T ss_pred EECCC------CEEEEEEECCCCCCCEEEEEECCCCEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCCCEEEEECC T ss_conf 75378------605788402310420255541254113303101232102456410101462466530022414776215 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCC------------------------------------------------- Q ss_conf 6666566766665169981588778777776------------------------------------------------- Q gi|254781108|r 293 ESSHNTIGSTRLKKFVIFITDGENSGASAYQ------------------------------------------------- 323 (398) Q Consensus 293 ~~~~~~~~~~~~~k~iillTDG~~~~~~~~~------------------------------------------------- 323 (398) + ...+|+|||||||+.+...... T Consensus 117 ~--------~~~~kvIiliTDG~~~~~~~~~~~~~~~~~~~~v~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (269) T 2ww8_A 117 R--------QNSQKVIFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQ 188 (269) T ss_dssp C--------SSSEEEEEEEESSCCSEECCBCCCCSTTCCCHHHHHHHHHHTSTTSSSCCGGGBCCCCTTCGGGTCEECSS T ss_pred C--------CCCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCEEEECCEEEEECCCCCEEECCCCE T ss_conf 7--------76520478615663100000134454100476313105665112112066111012310122102037742 Q ss_pred -----------CCHHHHHHHHHHHHCCCEEEEEEECCCCC-------HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf -----------63148999999997898899999547975-------589999985199818994698999999999999 Q gi|254781108|r 324 -----------NTLNTLQICEYMRNAGMKIYSVAVSAPPE-------GQDLLRKCTDSSGQFFAVNDSRELLESFDKITD 385 (398) Q Consensus 324 -----------~~~~~~~~c~~~K~~gi~IytIg~~~~~~-------~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~~ 385 (398) .+..+..+|+.+|++||+||||||+.++. ++++|++|||+|+|||+|++ |.++|++|++ T Consensus 189 ~~~~~~~~~~~~~~~~~~~c~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~~~~~---~~~~f~~ia~ 265 (269) T 2ww8_A 189 SNSNTAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVTD---TTKILEQLNR 265 (269) T ss_dssp CTCSSCCBCBSHHHHHHHHHHHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEEEESS---GGGHHHHHHH T ss_pred ECCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECC---CCCEECCCCC T ss_conf 7532057620474305788752046763035776771564210023430577566116653264056---6511113355 Q ss_pred HHHH Q ss_conf 8751 Q gi|254781108|r 386 KIQE 389 (398) Q Consensus 386 ~i~~ 389 (398) +|.+ T Consensus 266 ~~~~ 269 (269) T 2ww8_A 266 YFHT 269 (269) T ss_dssp HHTT T ss_pred CCEE T ss_conf 4127 No 2 >>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457) Probab=99.80 E-value=1.6e-18 Score=129.16 Aligned_cols=196 Identities=20% Similarity=0.205 Sum_probs=138.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541 Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398) Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398) ....++|+++|+|.||||... +....+.+...++. T Consensus 41 ~~~~~~div~viD~SgSm~~~---------------------------------------------~~~~~k~~~~~~~~ 75 (259) T 3hrz_D 41 DPSGSMNIYLVLDGSGSIGAS---------------------------------------------DFTGAKKCLVNLIE 75 (259) T ss_dssp CTTCEEEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHH T ss_conf 677755679998347704778---------------------------------------------89999999999998 Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCC--CCCCCHHHHHHHHHCC-----CCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 0220276877652134654126776543112--3568999999997357-----78887445889999999611346666 Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCT--PLSNNLNEVKSRLNKL-----NPYENTNTYPAMHHAYRELYNEKESS 295 (398) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~~~~~I~~l-----~~~G~T~~~~gl~~a~~~l~~~~~~~ 295 (398) .+..... ..+.+.+.|+......... ....+...++.+|+++ .++|+|+++.|+..+.+.|....... T Consensus 76 ~~~~~~~-----~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~ 150 (259) T 3hrz_D 76 KVASYGV-----KPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVP 150 (259) T ss_dssp HHHHTTC-----CCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CC T ss_pred HCCCCCC-----CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 6557889-----86899999679516998547777678999999997276656777775689999999999754210256 Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHH-------HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC--- Q ss_conf 6566766665169981588778777776631489-------999999978988999995479755899999851998--- Q gi|254781108|r 296 HNTIGSTRLKKFVIFITDGENSGASAYQNTLNTL-------QICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG--- 365 (398) Q Consensus 296 ~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~-------~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~--- 365 (398) . ...++.+|+|||+|||+.+............ ..+..+++.|+++|+||+|. ..+...|+.+|+.++ T Consensus 151 ~--~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~igvg~-~~~~~~L~~iA~~~~g~~ 227 (259) T 3hrz_D 151 P--EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQ 227 (259) T ss_dssp C--TTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCC T ss_pred C--CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHCCCCCCC T ss_conf 6--6567998799998389766788840233322113456788999987890999997888-689999999974889873 Q ss_pred CEEEECCHHHHHHHHHHHHHHHHHCE Q ss_conf 18994698999999999999875124 Q gi|254781108|r 366 QFFAVNDSRELLESFDKITDKIQEQS 391 (398) Q Consensus 366 ~yy~a~~~~~L~~aF~~I~~~i~~~r 391 (398) +||.+.+.++|.++|++|.+.|...- T Consensus 228 ~~~~~~~~~~L~~~~~~i~~~i~~~~ 253 (259) T 3hrz_D 228 HVFKVKDMENLEDVFYQMIDESQSLS 253 (259) T ss_dssp CEECBSSHHHHHHHHHHHHHHHSCTT T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCC T ss_conf 39995999999998754322013553 No 3 >>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} (A:) Probab=99.75 E-value=4e-17 Score=120.76 Aligned_cols=178 Identities=10% Similarity=0.097 Sum_probs=140.1 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220 Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398) Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398) ++|+++++|.|+||... +....+.++..++..+.. T Consensus 2 p~DivfllD~S~SM~~~---------------------------------------------~~~~~k~~~~~~i~~~~~ 36 (184) T 3gxb_A 2 VLDVAFVLEGSDKIGEA---------------------------------------------DFNRSKEFMEEVIQRMDV 36 (184) T ss_dssp CEEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHHTSCB T ss_pred CEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCCC T ss_conf 05899999798998979---------------------------------------------999999999999996565 Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 27687765213465412677654311235689999999973577--8887445889999999611346666656676666 Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN--PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398) Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~--~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398) .. ...+.+.+.|++............+...+...+..+. ++|+|+++.++..+...+.......+ +.. T Consensus 37 ~~-----~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~-----~~~ 106 (184) T 3gxb_A 37 GQ-----DSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVSQGDR-----EQA 106 (184) T ss_dssp CT-----TSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHHTCCCCCCSCCCHHHHHHHHHHTGGGSCCGGG-----GGS T ss_pred CC-----CCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-----CCC T ss_conf 88-----86089999983124565176433677999998712100363033589999999998615134898-----898 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH Q ss_conf 51699815887787777766314899999999789889999954797558999998519981899469899999999999 Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKIT 384 (398) Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~ 384 (398) +|++||+|||..+... ..+.+|++||+||+|.+ .+.+.|+..|+ .+++|.+.+.++|.++|++|. T Consensus 107 ~~~ivl~TDG~~~~~~-------------~~~~~~~~i~~igig~~-~~~~~l~~ia~-~~~~~~~~~~~~l~~~~~~i~ 171 (184) T 3gxb_A 107 PNLVYMVTGNPASDEI-------------KRLPGDIQVVPIGVGPN-ANVQELERIGW-PNAPILIQDFETLPREAPDLV 171 (184) T ss_dssp CEEEEEEECSCCSSCC-------------CCCCTTEEEEEEEESTT-SCHHHHHHHHT-TSCCEEESCTTTHHHHHHHHH T ss_pred CEEEEEECCCCCCHHH-------------HHHHCCCEEEEEEECCC-CCHHHHHHHCC-CCCEEEECCHHHHHHHHHHHH T ss_conf 5699996699970578-------------98742785999994561-58999998739-996799389999999999999 Q ss_pred HHHHHCEEEE Q ss_conf 9875124573 Q gi|254781108|r 385 DKIQEQSVRI 394 (398) Q Consensus 385 ~~i~~~r~~~ 394 (398) ..|.+..-+- T Consensus 172 ~~l~~~~~~~ 181 (184) T 3gxb_A 172 LQRCCSPHHH 181 (184) T ss_dssp HHHHCC---- T ss_pred HHHCCCCCCC T ss_conf 7556999775 No 4 >>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} (A:1-214) Probab=99.75 E-value=1.9e-17 Score=122.73 Aligned_cols=193 Identities=19% Similarity=0.171 Sum_probs=135.8 Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 43135750556666667666310123310230126887654031013432201125553334100024566554102202 Q gi|254781108|r 148 ISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKA 227 (398) Q Consensus 148 ~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 227 (398) +|+++|+|.||||... +++..+.++..+++.+... T Consensus 2 lDvv~viD~SgSM~~~---------------------------------------------~~~~~k~~~~~~i~~l~~~ 36 (214) T 1rrk_A 2 MNIYLVLDGSDSIGAS---------------------------------------------NFTGAKKVLVNLIEKVASY 36 (214) T ss_dssp EEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHHHHHHT T ss_pred EEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHCCCC T ss_conf 3499999377889868---------------------------------------------9999999999999847678 Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCC--CCCCCHHHHHHHH-----HCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 76877652134654126776543112--3568999999997-----3577888744588999999961134666665667 Q gi|254781108|r 228 IQEKKNLSVRIGTIAYNIGIVGNQCT--PLSNNLNEVKSRL-----NKLNPYENTNTYPAMHHAYRELYNEKESSHNTIG 300 (398) Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~~~~~I-----~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~ 300 (398) .. ..+.+++.|+......... ........+...+ +...+.|+|+++.+|.++.+.+......... . T Consensus 37 ~~-----~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~~--~ 109 (214) T 1rrk_A 37 GV-----KPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPE--G 109 (214) T ss_dssp TC-----CCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC--------C T ss_pred CC-----CEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--C T ss_conf 99-----6199999988816899817987756899999999717557876888768999999999997641124765--5 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHH-------HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC---CEEEE Q ss_conf 6666516998158877877777663148-------9999999978988999995479755899999851998---18994 Q gi|254781108|r 301 STRLKKFVIFITDGENSGASAYQNTLNT-------LQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG---QFFAV 370 (398) Q Consensus 301 ~~~~~k~iillTDG~~~~~~~~~~~~~~-------~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~---~yy~a 370 (398) .++.+|+|||+|||..+.+......... ...+..+|+.||.||+||+|. ..+..+|+..|..++ +||.+ T Consensus 110 ~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igig~-~~~~~~l~~ia~~~~g~~~~~~~ 188 (214) T 1rrk_A 110 WNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVCKV 188 (214) T ss_dssp GGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEEET T ss_pred CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC-CCCHHHHHHHHHCCCCCCCEEEC T ss_conf 56887699999797566789848999999987888888887876794999834777-57999999775257876561665 Q ss_pred CCHHHHHHHHHHHHHHHHHCEEE Q ss_conf 69899999999999987512457 Q gi|254781108|r 371 NDSRELLESFDKITDKIQEQSVR 393 (398) Q Consensus 371 ~~~~~L~~aF~~I~~~i~~~r~~ 393 (398) .+.++|.++|++|.++|.+..++ T Consensus 189 ~~~~~l~~~~~~i~~~l~~~~~~ 211 (214) T 1rrk_A 189 KDMECLEDVFYQMIDESQSLSLC 211 (214) T ss_dssp TCHHHHHHHHHHHSCGGGGTTCT T ss_pred CCHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999998764324543234 No 5 >>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* (A:1-224) Probab=99.72 E-value=4.8e-17 Score=120.27 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=139.0 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410 Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398) Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398) ...++|+++++|.||||... +++..+.++..++.. T Consensus 6 ~~~~~div~viD~SgSM~~~---------------------------------------------~~~~~k~a~~~~~~~ 40 (224) T 2odp_A 6 RSGHLNLYLLLDASQSVSEN---------------------------------------------DFLIFKESASLMVDR 40 (224) T ss_dssp SSSEEEEEEEEECSTTSCHH---------------------------------------------HHHHHHHHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHH T ss_conf 78987699999587989879---------------------------------------------999999999999985 Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCC--CCCCCHHHHHHHH-----HCCCCCCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 220276877652134654126776543112--3568999999997-----357788874458899999996113466666 Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCT--PLSNNLNEVKSRL-----NKLNPYENTNTYPAMHHAYRELYNEKESSH 296 (398) Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~~~~~I-----~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~ 296 (398) +.... ...+.+.+.|.......... ............+ +.+.+.|+|++..||..+.+.+........ T Consensus 41 ~~~~~-----~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~l~~~~~~~~ 115 (224) T 2odp_A 41 IFSFE-----INVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLG 115 (224) T ss_dssp HHTTC-----CCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCC-----CCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 34589-----9619999998784369982798875579999999971755667788977799999999999987654202 Q ss_pred C-CCCCCCCCEEEEECCCCCCCCCCCCCCCHH---HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC---CCEEE Q ss_conf 5-667666651699815887787777766314---8999999997898899999547975589999985199---81899 Q gi|254781108|r 297 N-TIGSTRLKKFVIFITDGENSGASAYQNTLN---TLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS---GQFFA 369 (398) Q Consensus 297 ~-~~~~~~~~k~iillTDG~~~~~~~~~~~~~---~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~---~~yy~ 369 (398) . .......+|++||+|||+.+.......... ....+..+|+.||.||+|+++.+..+..+|+.+|+.+ .+||. T Consensus 116 ~~~~~~~~~~~~iilitDg~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~l~~ia~~~~g~~~~~~ 195 (224) T 2odp_A 116 METMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFI 195 (224) T ss_dssp TTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEE T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE T ss_conf 34566678862999997785446885278999987658999998669779999505865599999998638898724999 Q ss_pred ECCHHHHHHHHHHHHHHHHHC Q ss_conf 469899999999999987512 Q gi|254781108|r 370 VNDSRELLESFDKITDKIQEQ 390 (398) Q Consensus 370 a~~~~~L~~aF~~I~~~i~~~ 390 (398) +.+.++|.++|++|.++|... T Consensus 196 ~~~~~~l~~~~~~i~~~i~~~ 216 (224) T 2odp_A 196 LQDTKALHQVFEHMLDVSKLT 216 (224) T ss_dssp ESSHHHHHHHHHHHEECTTCC T ss_pred ECCHHHHHHHHHHHHCCCCCC T ss_conf 589899999998750221114 No 6 >>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} (A:) Probab=99.70 E-value=2.8e-16 Score=115.64 Aligned_cols=195 Identities=21% Similarity=0.224 Sum_probs=135.3 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541 Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398) Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398) ....++|+++|+|.||||... +++..+.++..+++ T Consensus 11 ~~~~~~div~viD~SgSM~~~---------------------------------------------~~~~~k~a~~~~~~ 45 (223) T 1q0p_A 11 DPSGSMNIYLVLDGSDSIGAS---------------------------------------------NFTGAKKSLVNLIE 45 (223) T ss_dssp ----CEEEEEEEECSTTTCHH---------------------------------------------HHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHH T ss_conf 899987799999488889828---------------------------------------------99999999999999 Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCC--CCCCCCCHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 02202768776521346541267765431--1235689999999973577-----8887445889999999611346666 Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQ--CTPLSNNLNEVKSRLNKLN-----PYENTNTYPAMHHAYRELYNEKESS 295 (398) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~I~~l~-----~~G~T~~~~gl~~a~~~l~~~~~~~ 295 (398) .+..... ..+.+.+.|........ ....+.........+..+. +.|+|+++.++.++.+.+....... T Consensus 46 ~~~~~~~-----~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~al~~a~~~~~~~~~~~ 120 (223) T 1q0p_A 46 KVASYGV-----KPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVP 120 (223) T ss_dssp HHHTTTC-----CCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSC T ss_pred HHHCCCC-----CCEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 7544798-----85899999779459999825653011788888764212023578898679999999999987401246 Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH-------HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC--- Q ss_conf 65667666651699815887787777766314899-------99999978988999995479755899999851998--- Q gi|254781108|r 296 HNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQ-------ICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG--- 365 (398) Q Consensus 296 ~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~-------~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~--- 365 (398) .. ..+..+|+||++|||..+............. ....+++.|+.+|+||+|. ..+..+|+.+|+.++ T Consensus 121 ~~--~~~~~~~~iil~tdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ig~g~-~~~~~~L~~iA~~~~g~~ 197 (223) T 1q0p_A 121 PE--GWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQ 197 (223) T ss_dssp CT--TGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCC T ss_pred CC--CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHCCCCCCE T ss_conf 66--667775289997278766789807899999886667899999986698069874687-579999999980889972 Q ss_pred CEEEECCHHHHHHHHHHHHHHHHHC Q ss_conf 1899469899999999999987512 Q gi|254781108|r 366 QFFAVNDSRELLESFDKITDKIQEQ 390 (398) Q Consensus 366 ~yy~a~~~~~L~~aF~~I~~~i~~~ 390 (398) +||.+.+.++|.++|++|.+.|.+. T Consensus 198 ~~~~~~~~~~l~~~~~~i~~~i~~v 222 (223) T 1q0p_A 198 HVFKVKDMENLEDVFYQMIDESQSL 222 (223) T ss_dssp CEEETTC-----------------C T ss_pred EEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 7999399999999999998750578 No 7 >>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} (X:) Probab=99.70 E-value=5.6e-16 Score=113.87 Aligned_cols=177 Identities=17% Similarity=0.176 Sum_probs=126.8 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) ..++++++++|.||||...+.. ..+.+...+.... T Consensus 4 ~~~~div~viD~SgSM~~~~~~---------------------------------------------~~~~~~~~~~~~~ 38 (182) T 1shu_X 4 RRAFDLYFVLDKSGSVANNWIE---------------------------------------------IYNFVQQLAERFV 38 (182) T ss_dssp BSCEEEEEEEECSGGGGGGHHH---------------------------------------------HHHHHHHHHHHCC T ss_pred CCCEEEEEEEECCCCCCCCHHH---------------------------------------------HHHHHHHHHHHHC T ss_conf 9974799999378785437999---------------------------------------------9999999999735 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 202768776521346541267765431-1235689999999973577888744588999999961134666665667666 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQ-CTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398) ....+...+.|........ ....+.....+...++.+.++|+|+...++..+++.+..... .. T Consensus 39 --------~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~--------~~ 102 (182) T 1shu_X 39 --------SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGG--------LK 102 (182) T ss_dssp --------CTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTG--------GG T ss_pred --------CCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC--------CC T ss_conf --------89977999995154026278778799999998776530467862578999999987642113--------68 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC-CCEEEECCHHHHHHHHHH Q ss_conf 6516998158877877777663148999999997898899999547975589999985199-818994698999999999 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS-GQFFAVNDSRELLESFDK 382 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~-~~yy~a~~~~~L~~aF~~ 382 (398) .+|++||+|||+.+... .......+..+++.||.||+||+|. .+...|+.+|+.+ |+||.+++.++|.++|++ T Consensus 103 ~~~~~ilitdg~~~~~~----~~~~~~~~~~~~~~~i~i~~ig~g~--~~~~~l~~ia~~~~g~~~~~~~~~~l~~~~~~ 176 (182) T 1shu_X 103 TSSIIIALTDGKLDGLV----PSYAEKEAKISRSLGASVYCVGVLD--FEQAQLERIADSKEQVFPVKGGFQALKGIINS 176 (182) T ss_dssp SCEEEEEEECCCCCTTH----HHHHHHHHHHHHHTTCEEEEEECSS--CCHHHHHHHSSSGGGEEESSSTTHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCC----CHHHHHHHHHHHHCCCEEEEEEECC--CCHHHHHHHHCCCCCEEEECCCHHHHHHHHHH T ss_conf 86179991478778886----3899999999997798899999785--59999999868999749934999999999999 Q ss_pred HHHHHH Q ss_conf 999875 Q gi|254781108|r 383 ITDKIQ 388 (398) Q Consensus 383 I~~~i~ 388 (398) |.+.|. T Consensus 177 i~~~iC 182 (182) T 1shu_X 177 ILAQSC 182 (182) T ss_dssp HHHTBC T ss_pred HHHHHC T ss_conf 986339 No 8 >>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} (A:) Probab=99.69 E-value=8.6e-15 Score=106.74 Aligned_cols=188 Identities=10% Similarity=0.184 Sum_probs=138.7 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 34556543135750556666667666310123310230126887654031013432201125553334100024566554 Q gi|254781108|r 142 SSENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLV 221 (398) Q Consensus 142 ~~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 221 (398) .....++++++++|.||||... +....+.++..++ T Consensus 8 ~~~~~~~div~vlD~SgSM~~~---------------------------------------------~~~~~k~~~~~l~ 42 (202) T 1ijb_A 8 FYCSRLLDLVFLLDGSSRLSEA---------------------------------------------EFEVLKAFVVDMM 42 (202) T ss_dssp CCBCSCEEEEEEEECBTTSCHH---------------------------------------------HHHHHHHHHHHHH T ss_pred CCCCCCEEEEEEEECCCCCCCH---------------------------------------------HHHHHHHHHHHHH T ss_conf 6788862089999698888857---------------------------------------------7999999999999 Q ss_pred HHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 1022027687765213465412677654311235689999999973577--88874458899999996113466666566 Q gi|254781108|r 222 NSIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLN--PYENTNTYPAMHHAYRELYNEKESSHNTI 299 (398) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~--~~G~T~~~~gl~~a~~~l~~~~~~~~~~~ 299 (398) ..+... ....+.+.+.|+.............+...+...+..+. .+++|+++.++..+.+.+...... T Consensus 43 ~~~~~~-----~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~----- 112 (202) T 1ijb_A 43 ERLRVS-----QKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDR----- 112 (202) T ss_dssp HTBCBS-----TTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHHTSSSCSC----- T ss_pred HHHHCC-----CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC----- T ss_conf 998517-----9997899999789630210345334578999999743022332344406789999998640134----- Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC--CCEEEECCHHHHH Q ss_conf 76666516998158877877777663148999999997898899999547975589999985199--8189946989999 Q gi|254781108|r 300 GSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS--GQFFAVNDSRELL 377 (398) Q Consensus 300 ~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~--~~yy~a~~~~~L~ 377 (398) ...++++||+|||+.+... ..........++..|+.||+||++. +.+..+|+..|..+ .++|.+++.++|. T Consensus 113 --~~~~~~~i~itdg~~~~~~----~~~~~~~~~~~~~~~~~i~~igig~-~~~~~~l~~ia~~~~g~~~~~~~~~~~l~ 185 (202) T 1ijb_A 113 --PEASRIALLLMASQEPQRM----SRNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDELE 185 (202) T ss_dssp --TTSEEEEEEEECCCCCGGG----CTTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGGHH T ss_pred --CCCCCEEEEEEECCCCCCC----CCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHCCCCCCEEEECCHHHHH T ss_conf --5567538999815888877----5016789987531795899999587-34999999998568998679858999999 Q ss_pred HHHHHHHHHHHHCE Q ss_conf 99999999875124 Q gi|254781108|r 378 ESFDKITDKIQEQS 391 (398) Q Consensus 378 ~aF~~I~~~i~~~r 391 (398) ++|++|.+.|.... T Consensus 186 ~~~~~i~~~l~~~~ 199 (202) T 1ijb_A 186 QQRDEIVSYLCDLA 199 (202) T ss_dssp HHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999972557 No 9 >>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (A:1-252) Probab=99.64 E-value=3.8e-16 Score=114.89 Aligned_cols=191 Identities=12% Similarity=0.110 Sum_probs=130.1 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) ....++++|+|.|+||........ ..+++..+.++..++..+ T Consensus 33 ~~~~div~viD~S~SM~~~~~~~~--------------------------------------~s~~~~~k~~~~~~i~~l 74 (252) T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDE--------------------------------------LTPFDMSIQCIQSVYISK 74 (252) T ss_dssp -CEEEEEEEEECSGGGGCCCSSSS--------------------------------------CCHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEEEECCHHHCCCCCCCC--------------------------------------CCHHHHHHHHHHHHHHHC T ss_conf 684599999989878878788889--------------------------------------784999999999999961 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCC--------CCCCCC----CCHHHHHHHHHC---------CCCCCCCCHHHHHHH Q ss_conf 20276877652134654126776543--------112356----899999999735---------778887445889999 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGN--------QCTPLS----NNLNEVKSRLNK---------LNPYENTNTYPAMHH 283 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lt----~~~~~~~~~I~~---------l~~~G~T~~~~gl~~ 283 (398) ..... ..+.+.+.|....... .+.++. .+...+...++. ..+.|+|++..||.. T Consensus 75 ~~~~~-----~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~ 149 (252) T 1jey_A 75 IISSD-----RDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWV 149 (252) T ss_dssp HHTTC-----CCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHH T ss_pred CCCCC-----CCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHH T ss_conf 66799-----9818999973689888889870799504888799999999976402331022103676654439999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC------HHHHH Q ss_conf 999611346666656676666516998158877877777663148999999997898899999547975------58999 Q gi|254781108|r 284 AYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE------GQDLL 357 (398) Q Consensus 284 a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~------~~~~l 357 (398) +...|..... ...+|+|||+|||+.+.............+++.+++.||.+|+|+++.+.. ...++ T Consensus 150 a~~~l~~~~~--------~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~i~~~~~~~~~~~~~~~~ 221 (252) T 1jey_A 150 CANLFSDVQF--------KMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDII 221 (252) T ss_dssp HHHHHHTCSS--------CEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCCTTTTGGGTC T ss_pred HHHHHHHHCC--------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH T ss_conf 9999986130--------23674799988999878875377999999999999709047883468889876103168774 Q ss_pred HHHHCC-CCCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 998519-9818994698999999999999875 Q gi|254781108|r 358 RKCTDS-SGQFFAVNDSRELLESFDKITDKIQ 388 (398) Q Consensus 358 ~~cAs~-~~~yy~a~~~~~L~~aF~~I~~~i~ 388 (398) +.++.. +++||.+.+ .|.++|++|..++. T Consensus 222 ~~~~~~~~~~~~~~~~--~l~~~~~~i~~~~~ 251 (252) T 1jey_A 222 SIAEDEDLRVHFEESS--KLEDLLRKVRAKET 251 (252) T ss_dssp C--------CCCCCBC--SHHHHHHHHHHHHS T ss_pred HHCCCCCCCCCCCCHH--HHHHHHHHHHHCCC T ss_conf 1113322234665156--69999987642200 No 10 >>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} (A:) Probab=99.62 E-value=5.4e-14 Score=101.98 Aligned_cols=180 Identities=17% Similarity=0.288 Sum_probs=129.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541 Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398) Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398) ....++++++|||.|+||...... ..|++..+.++..+.. T Consensus 7 ~~~~~~div~vlD~S~Sm~~~~~~----------------------------------------~~rl~~~k~~v~~l~~ 46 (218) T 3ibs_A 7 VKRKGVEVIIALDISNSXLAQDVQ----------------------------------------PSRLEKAKRLISRLVD 46 (218) T ss_dssp ---CCCEEEEEEECSGGGGCCSSS----------------------------------------SCHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEEEECCCCCCCCCCC----------------------------------------CCHHHHHHHHHHHHHH T ss_conf 641794799999787476888778----------------------------------------3799999999999996 Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC----CCCCCCCCHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 0220276877652134654126776543112356899999999735----778887445889999999611346666656 Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNK----LNPYENTNTYPAMHHAYRELYNEKESSHNT 298 (398) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~----l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~ 298 (398) ... ..+.+.+.|..... ...+++.+.......+.. +.++|+|+++.||.++.+.|... T Consensus 47 ~~~---------~~rv~iv~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~~~~aL~~a~~~l~~~------- 108 (218) T 3ibs_A 47 ELD---------NDKVGXIVFAGDAF--TQLPITSDYISAKXFLESISPSLISKQGTAIGEAINLATRSFTPQ------- 108 (218) T ss_dssp TCS---------SCEEEEEEESSSEE--EEEEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSC------- T ss_pred HCC---------CCEEEEEEECCCCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHH------- T ss_conf 489---------96589999898121--120354256677777876233666689945789999775330110------- Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC------------------------CHH Q ss_conf 67666651699815887787777766314899999999789889999954797------------------------558 Q gi|254781108|r 299 IGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP------------------------EGQ 354 (398) Q Consensus 299 ~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~------------------------~~~ 354 (398) +...+++|++|||..+.. ........+++.|+.+|+++++.+. .+. T Consensus 109 ---~~~~~~~i~itDG~~~~~-------~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (218) T 3ibs_A 109 ---EGVGRAIIVITDGENHEG-------GAVEAAKAAAEKGIQVSVLGVGXPEGAPIPVEGTNDYRRDREGNVIVTRLNE 178 (218) T ss_dssp ---SSCCEEEEEEECCTTCCS-------CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCH T ss_pred ---HCCCCCEEEECCCCCCCC-------CCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH T ss_conf ---045653499438987777-------5046667766406537653047765544320122220102467545454799 Q ss_pred HHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHHHHHC Q ss_conf 99999851-9981899469899999999999987512 Q gi|254781108|r 355 DLLRKCTD-SSGQFFAVNDSRELLESFDKITDKIQEQ 390 (398) Q Consensus 355 ~~l~~cAs-~~~~yy~a~~~~~L~~aF~~I~~~i~~~ 390 (398) ..|+..|. ..|.||.+.+.++|.+.|.+.-....+- T Consensus 179 ~~l~~la~~~~g~~~~~~~~~~l~~~~~~~i~~~~~~ 215 (218) T 3ibs_A 179 GXCQEIAKDGKGIYVRVDNSNSAQKAISQEISKXAKS 215 (218) T ss_dssp HHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 9999999854908999518799999999999765043 No 11 >>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} (A:) Probab=99.62 E-value=1.4e-14 Score=105.51 Aligned_cols=179 Identities=11% Similarity=0.059 Sum_probs=121.9 Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022 Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398) Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398) .++++++++|.||||... +.+..+.++..++..+. T Consensus 4 ~~~di~~~iD~S~SM~~~---------------------------------------------~~~~~k~~~~~~i~~~~ 38 (189) T 1atz_A 4 QPLDVILLLDGSSSFPAS---------------------------------------------YFDEMKSFAKAFISKAN 38 (189) T ss_dssp CCEEEEEEEECSSSSCHH---------------------------------------------HHHHHHHHHHHHHHHSC T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHC T ss_conf 835899999588998989---------------------------------------------99999999999999735 Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 027687765213465412677654311235689999-9999735778887445889999999611346666656676666 Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNE-VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~-~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398) ... ...+.+.+.|+.............+... ....++.+.++|+|....++.+++..+........ ... T Consensus 39 ~~~-----~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~~~~~-----~~~ 108 (189) T 1atz_A 39 IGP-----RLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGAR-----PGA 108 (189) T ss_dssp BST-----TSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCC-----TTS T ss_pred CCC-----CCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-----CCC T ss_conf 488-----7758999961231469972685217899999998877632000013666678888645640798-----898 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHH Q ss_conf 516998158877877777663148999999997898899999547975589999985199-8189946989999999999 Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSS-GQFFAVNDSRELLESFDKI 383 (398) Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~-~~yy~a~~~~~L~~aF~~I 383 (398) .+++||+|||..+.. ...+++.+|++||+||+||+|. +.+..+|+..|..+ |.||...+..++.+.+.++ T Consensus 109 ~~~ii~iTDG~~~~~--------~~~~~~~~~~~~v~i~~igig~-~~~~~~l~~ia~~~~g~~~~~~~~~~~~~~l~~~ 179 (189) T 1atz_A 109 SKAVVILVTDVSVDS--------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIEDLPTMVTL 179 (189) T ss_dssp EEEEEEEECSCCSSC--------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTTHHHHHHHS T ss_pred CEEEEEECCCCCCCH--------HHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH T ss_conf 538999727987523--------7799999985683699998578-4899999998568886747983688678889999 Q ss_pred HHHHH Q ss_conf 99875 Q gi|254781108|r 384 TDKIQ 388 (398) Q Consensus 384 ~~~i~ 388 (398) .+++. T Consensus 180 ~~~~~ 184 (189) T 1atz_A 180 GNSFL 184 (189) T ss_dssp CSHHH T ss_pred HHHHH T ss_conf 99999 No 12 >>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} (A:) Probab=99.61 E-value=2.2e-14 Score=104.28 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=130.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410 Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398) Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398) ...++|+++|+|.||||.... ..+.+...+... T Consensus 4 ~~~~~divfvlD~SgSM~~~~-----------------------------------------------~~~~~~~~~~~~ 36 (213) T 1pt6_A 4 CSTQLDIVIVLDGSNSIYPWD-----------------------------------------------SVTAFLNDLLKR 36 (213) T ss_dssp ---CEEEEEEEECCTTCCCHH-----------------------------------------------HHHHHHHHHHTT T ss_pred CCCCEEEEEEEECCCCCCCHH-----------------------------------------------HHHHHHHHHHHH T ss_conf 998448999997888876899-----------------------------------------------999999999997 Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 22027687765213465412677654311235689999999973577888744588999999961134666665667666 Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398) Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398) +... ....+.+.+.|..............+...+...++.+...+++....|...+.......... ...... T Consensus 37 l~~~-----~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 108 (213) T 1pt6_A 37 MDIG-----PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA---RGARRG 108 (213) T ss_dssp SCBS-----TTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG---GTCCTT T ss_pred HCCC-----CCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---CCCCCC T ss_conf 1458-----88738999999644789982666676899999998787616854502677778888751422---377789 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHHHCCC--CCEEEECCH Q ss_conf 651699815887787777766314899999999789889999954797--------5589999985199--818994698 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP--------EGQDLLRKCTDSS--GQFFAVNDS 373 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~--------~~~~~l~~cAs~~--~~yy~a~~~ 373 (398) .+|++||+|||..+.. .........+|+.|++||+||+|.+. .....|+.+|+.+ ++||.+.+. T Consensus 109 ~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 182 (213) T 1pt6_A 109 VKKVMVIVTDGESHDN------HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 182 (213) T ss_dssp CEEEEEEEESSCCSCS------HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG T ss_pred CCEEEEEEECCCCCCC------HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCH T ss_conf 9547999956888884------2089999999988998999997166554443431359999998669985508992899 Q ss_pred HHHHHHHHHHHHHHHHCE Q ss_conf 999999999999875124 Q gi|254781108|r 374 RELLESFDKITDKIQEQS 391 (398) Q Consensus 374 ~~L~~aF~~I~~~i~~~r 391 (398) ++|.++|++|.+.+.+.. T Consensus 183 ~~l~~~~~~i~~~~~~~~ 200 (213) T 1pt6_A 183 LALVTIVKTLGERIFALE 200 (213) T ss_dssp GGGGGGHHHHHHHHTC-- T ss_pred HHHHHHHHHHHHHHHCCC T ss_conf 999999999999983566 No 13 >>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} (A:) Probab=99.60 E-value=3.7e-14 Score=102.98 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=127.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541 Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398) Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398) ....++|+++|+|.||||.... ..+.+...+.. T Consensus 18 ~~~~~~di~~viD~SgSM~~~~-----------------------------------------------~~~~~~~~~~~ 50 (223) T 2b2x_A 18 ECSTQLDIVIVLDGSNSIYPWE-----------------------------------------------SVIAFLNDLLK 50 (223) T ss_dssp ----CEEEEEEEECSTTCCCHH-----------------------------------------------HHHHHHHHHHT T ss_pred CCCCCEEEEEEEECCCCCCCHH-----------------------------------------------HHHHHHHHHHH T ss_conf 8998657999995889872799-----------------------------------------------99999999986 Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 02202768776521346541267765431123568999999997357--7888744588999999961134666665667 Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKL--NPYENTNTYPAMHHAYRELYNEKESSHNTIG 300 (398) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l--~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~ 300 (398) .+... ....+.+.+.|..............+.......+..+ ...|+|+...++..+...+....... T Consensus 51 ~l~~~-----~~~~~v~ii~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 120 (223) T 2b2x_A 51 RMDIG-----PKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEARGA----- 120 (223) T ss_dssp TSCCS-----TTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTC----- T ss_pred HHCCC-----CCCEEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----- T ss_conf 63458-----88607999997400578527545567999999997545443320101577877777622432378----- Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCC--CCEEEE Q ss_conf 6666516998158877877777663148999999997898899999547975--------589999985199--818994 Q gi|254781108|r 301 STRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSS--GQFFAV 370 (398) Q Consensus 301 ~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~--~~yy~a 370 (398) ..+..|+|||+|||..+.. ......+..+++++|+||+||+|.+.. +...|+.+|+.+ .++|.+ T Consensus 121 ~~~~~~~ivliTDG~~~~~------~~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~ 194 (223) T 2b2x_A 121 RRGVKKVMVIVTDGESHDN------YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 194 (223) T ss_dssp CTTSEEEEEEEESSCCTTG------GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEE T ss_pred CCCCCEEEEEEECCCCCCC------HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEC T ss_conf 8787337999846887762------3389999999753987999997066554433432479999998569986618983 Q ss_pred CCHHHHHHHHHHHHHHHHHCEE Q ss_conf 6989999999999998751245 Q gi|254781108|r 371 NDSRELLESFDKITDKIQEQSV 392 (398) Q Consensus 371 ~~~~~L~~aF~~I~~~i~~~r~ 392 (398) ++.++|.++|+.|.+.+..+.- T Consensus 195 ~~~~~L~~~~~~i~~~~~~~~~ 216 (223) T 2b2x_A 195 SDELALVTIVKALGERIFALEA 216 (223) T ss_dssp SSTTGGGGGHHHHHTTTC---- T ss_pred CCHHHHHHHHHHHHHHHCCCCC T ss_conf 8999999999999998621535 No 14 >>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} (C:) Probab=99.59 E-value=7.3e-14 Score=101.16 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=121.1 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410 Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398) Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398) ...++|+++|+|.||||.... ++...+.++..+++. T Consensus 3 ~~~~~div~viD~SgSM~~~~--------------------------------------------~~~~~~~~~~~~~~~ 38 (200) T 1v7p_C 3 SPSLIDVVVVCDESNSIYPWD--------------------------------------------AVKNFLEKFVQGLDI 38 (200) T ss_dssp ---CEEEEEEEECCTTCCCHH--------------------------------------------HHHHHHHHHHHTSCB T ss_pred CCCCEEEEEEEECCCCCCCHH--------------------------------------------HHHHHHHHHHHHCCC T ss_conf 986167999996989871699--------------------------------------------999999999997165 Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 220276877652134654126776543112356899999999735778887--445889999999611346666656676 Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYEN--TNTYPAMHHAYRELYNEKESSHNTIGS 301 (398) Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~--T~~~~gl~~a~~~l~~~~~~~~~~~~~ 301 (398) . ....+.+.+.|+.....................+..+.+.+. .........+...+...... .. T Consensus 39 ~--------~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 105 (200) T 1v7p_C 39 G--------PTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASG-----GR 105 (200) T ss_dssp S--------TTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGT-----CC T ss_pred C--------CCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC-----CC T ss_conf 8--------8851899999851455751765025789999987533210257644589999888752463348-----98 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC--------CHHHHHHHHHCCCC--CEEEEC Q ss_conf 66651699815887787777766314899999999789889999954797--------55899999851998--189946 Q gi|254781108|r 302 TRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP--------EGQDLLRKCTDSSG--QFFAVN 371 (398) Q Consensus 302 ~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~--------~~~~~l~~cAs~~~--~yy~a~ 371 (398) ...++++||+|||..+.. .....+...+++.||.||+||+|.+. .+...|+.+|..++ ++|.++ T Consensus 106 ~~~~~~iil~TDG~~~~~------~~~~~~~~~~~~~~v~i~~igvg~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~ 179 (200) T 1v7p_C 106 RSATKVMVVVTDGESHDG------SMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVS 179 (200) T ss_dssp TTSEEEEEEEESSCCSCG------GGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEES T ss_pred CCCCEEEEEEECCCCCCC------CHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECC T ss_conf 775148999706887874------01269999998689689999965644446544200599999996598611399819 Q ss_pred CHHHHHHHHHHHHHHHHHCE Q ss_conf 98999999999999875124 Q gi|254781108|r 372 DSRELLESFDKITDKIQEQS 391 (398) Q Consensus 372 ~~~~L~~aF~~I~~~i~~~r 391 (398) +.++|.++|++|.++|..+. T Consensus 180 ~~~~l~~~~~~i~~~i~~~~ 199 (200) T 1v7p_C 180 DEAALLEKAGTLGEQIFSIE 199 (200) T ss_dssp SSGGGHHHHHHHHHHHHTC- T ss_pred CHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999997733568 No 15 >>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} (A:) Probab=99.55 E-value=3.3e-16 Score=115.21 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=127.0 Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022 Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398) Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398) +++|+++++|.||||... +.+..+.++..++..+. T Consensus 1 Gp~divfliD~SgSM~~~---------------------------------------------~~~~~k~~~~~~i~~~~ 35 (179) T 1mjn_A 1 GNVDLVFLFDGSMSLQPD---------------------------------------------EFQKILDFMKDVMKKCS 35 (179) T ss_dssp CCEEEEEEEECBTTCCHH---------------------------------------------HHHHHHHHHHHHHHHTT T ss_pred CCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHHC T ss_conf 976999999687998879---------------------------------------------99999999999999736 Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 027687765213465412677654311235689999999973-5778887445889999999611346666656676666 Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLN-KLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~-~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398) .. ..+...+.|..............+.......+. ...++|+|+...++..+...+....... .... T Consensus 36 ~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-----~~~~ 103 (179) T 1mjn_A 36 NT-------SYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA-----RPDA 103 (179) T ss_dssp TS-------SEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTC-----CTTS T ss_pred CC-------CCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC-----CCCC T ss_conf 35-------56328999974115751111102678999998732335798515588999999875220189-----9998 Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCC--CEEEECCHHHHHHHHHH Q ss_conf 5169981588778777776631489999999978988999995479755899999851998--18994698999999999 Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSG--QFFAVNDSRELLESFDK 382 (398) Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~--~yy~a~~~~~L~~aF~~ 382 (398) ++++|++|||+.+.... .+.+.+|+++|.||+||+| ...+..+|+.+|..++ ++|.+++.++|.++|++ T Consensus 104 ~~~ii~~TDG~~~~~~~--------~~~~~~~~~~v~v~~igiG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~l~~~~~~ 174 (179) T 1mjn_A 104 TKVLIIITDGEATDSGN--------IDAAKDIIRYIIGIGKHFQ-TKESQETLHKFASKPASEFVKILDTFEKLKDLCTE 174 (179) T ss_dssp EEEEEEEESSCCSSCSC--------CGGGTTSEEEEEEESGGGC-SHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHH T ss_pred CEEEEEECCCCCCCCHH--------HHHHHCCCCCEEEEEEECC-CCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH T ss_conf 24899980799886367--------9998387353599985057-40279999998579986529986998999999999 Q ss_pred HHHHH Q ss_conf 99987 Q gi|254781108|r 383 ITDKI 387 (398) Q Consensus 383 I~~~i 387 (398) |.++| T Consensus 175 i~~~i 179 (179) T 1mjn_A 175 LQKKI 179 (179) T ss_dssp HHHHC T ss_pred HHHHC T ss_conf 97039 No 16 >>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} (A:) Probab=99.53 E-value=9e-14 Score=100.64 Aligned_cols=185 Identities=16% Similarity=0.226 Sum_probs=128.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 55654313575055666666766631012331023012688765403101343220112555333410002456655410 Q gi|254781108|r 144 ENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNS 223 (398) Q Consensus 144 ~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 223 (398) ...++++++|+|.||||... ++...+.++..+++. T Consensus 6 ~~~~~di~~viD~SgSM~~~---------------------------------------------~~~~~k~~~~~~~~~ 40 (198) T 1n3y_A 6 SRQEQDIVFLIDGSGSISSR---------------------------------------------NFATMMNFVRAVISQ 40 (198) T ss_dssp --CCEEEEEEEECCTTSCHH---------------------------------------------HHHHHHHHHHHHHTT T ss_pred CCCCCCEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHH T ss_conf 78887589999798998989---------------------------------------------999999999999996 Q ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 220276877652134654126776543112-3568999999997357788874458899999996113466666566766 Q gi|254781108|r 224 IQKAIQEKKNLSVRIGTIAYNIGIVGNQCT-PLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398) Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398) +... ..+.+.+.|.......... ............++.+...++|....++..+...+.......+ . T Consensus 41 l~~~-------~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 108 (198) T 1n3y_A 41 FQRP-------STQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGAR-----R 108 (198) T ss_dssp SCTT-------TEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCC-----T T ss_pred CCCC-------CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHCCCC-----C T ss_conf 3988-------858999998435220367765110789999998766235997088999999998614310798-----7 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC-C-CEEEECCHHHHH Q ss_conf 665169981588778777776631489999999978988999995479---75589999985199-8-189946989999 Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS-G-QFFAVNDSRELL 377 (398) Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~-~-~yy~a~~~~~L~ 377 (398) ..+|++||+|||+.+.... ....+.+.+++.||.+|+|+++.. ......|+..|+.+ | ++|.+.+.++|. T Consensus 109 ~~~~~iiliTDG~~~~~~~-----~~~~~~~~~~~~~i~i~~i~i~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~ 183 (198) T 1n3y_A 109 DAAKILIVITDGKKEGDSL-----DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALK 183 (198) T ss_dssp TSEEEEEEEESSCCBSCSS-----CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGG T ss_pred CCCCEEEEEECCCCCCCHH-----HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHH T ss_conf 7630599994589888622-----19999999997898899999777656744599999985699865089828999999 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999987512 Q gi|254781108|r 378 ESFDKITDKIQEQ 390 (398) Q Consensus 378 ~aF~~I~~~i~~~ 390 (398) .+|++|.+.|... T Consensus 184 ~~~~~i~~~l~~v 196 (198) T 1n3y_A 184 DIQNQLKEKIFAI 196 (198) T ss_dssp GGHHHHHHHHHTC T ss_pred HHHHHHHHHHHCC T ss_conf 9999999875057 No 17 >>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (B:1-236,B:463-505) Probab=99.51 E-value=1.7e-12 Score=92.95 Aligned_cols=186 Identities=9% Similarity=0.036 Sum_probs=121.2 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220 Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398) Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398) ..++++|+|.||||...... ...+++..+.++..++..+.. T Consensus 7 k~~ivlviD~SgSM~~~~~~---------------------------------------~~tr~~~ak~a~~~li~~~~~ 47 (279) T 1jey_B 7 KAAVVLCMDVGFTMSNSIPG---------------------------------------IESPFEQAKKVITMFVQRQVF 47 (279) T ss_dssp CEEEEEEEECCGGGGCCBTT---------------------------------------BCCHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCHHHCCCCCC---------------------------------------CCCHHHHHHHHHHHHHHHHHC T ss_conf 96399999898677677889---------------------------------------999799999999999998723 Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCC------------CCC-CCCCHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCC Q ss_conf 2768776521346541267765431------------123-56899999999735778-887445889999999611346 Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIVGNQ------------CTP-LSNNLNEVKSRLNKLNP-YENTNTYPAMHHAYRELYNEK 292 (398) Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-lt~~~~~~~~~I~~l~~-~G~T~~~~gl~~a~~~l~~~~ 292 (398) ... ..+.+.+.|+....... ..+ ...+...++..++.+.+ +|+|+++.||..|...+.... T Consensus 48 ~~~-----~d~vgiv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~~~~aL~~A~~~l~~~~ 122 (279) T 1jey_B 48 AEN-----KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHET 122 (279) T ss_dssp TTC-----CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHS T ss_pred CCC-----CCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 899-----987999998347888755555675654985558998999999998644688778787999999999999875 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHH-----HHHHHHC-CCCC Q ss_conf 666656676666516998158877877777663148999999997898899999547975589-----9999851-9981 Q gi|254781108|r 293 ESSHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD-----LLRKCTD-SSGQ 366 (398) Q Consensus 293 ~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~-----~l~~cAs-~~~~ 366 (398) ... +..+++|||+|||..+.+. .....+++.+|+.||+||+||++....... .+..++. +.+. T Consensus 123 ~~~------~~~~~~IiliTDG~~~~~~-----~~~~~~~~~l~~~~i~i~~Igig~~~~~~~~~~~~~~~~~~~~~~~~ 191 (279) T 1jey_B 123 IGK------KFEKRHIEIFTDLSSRFSK-----SQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPS 191 (279) T ss_dssp SSS------CCSEEEEEEECCCCSCCCC-----TTHHHHHHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCC T ss_pred HCC------CCCCEEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 046------5454389998079988687-----89999999998659659996146665354664233302331124554 Q ss_pred EEEECCHHHHHHHHH---HHHHHH Q ss_conf 899469899999999---999987 Q gi|254781108|r 367 FFAVNDSRELLESFD---KITDKI 387 (398) Q Consensus 367 yy~a~~~~~L~~aF~---~I~~~i 387 (398) +|.+....++...++ +|...+ T Consensus 192 ~~~~~~~~~~~~~~~~l~~i~~~~ 215 (279) T 1jey_B 192 FPLKGITEQQKEGLEIVKMVMISL 215 (279) T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 312343211233200112100001 No 18 >>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} (A:) Probab=99.50 E-value=2.2e-13 Score=98.32 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=129.1 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) ..++|+++|+|.||||... +....+.++..+++.+ T Consensus 3 ~~~~di~fviD~SgSM~~~---------------------------------------------~~~~~k~~~~~~~~~l 37 (194) T 1mf7_A 3 QEDSDIAFLIDGSGSIIPH---------------------------------------------DFRRMKEFVSTVMEQL 37 (194) T ss_dssp CCCEEEEEEEECCTTSCHH---------------------------------------------HHHHHHHHHHHHHHHH T ss_pred CCCEEEEEEEECCCCCCHH---------------------------------------------HHHHHHHHHHHHHHHC T ss_conf 9881699999388998868---------------------------------------------9999999999999970 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 202768776521346541267765431123568999999997-3577888744588999999961134666665667666 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRL-NKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I-~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398) ... ..+.+.+.|..............+...+...+ +...++|+|+.+.++..+.+.+.......+ .. T Consensus 38 ~~~-------~~~v~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~l~~~~~~~~~~~~~~~-----~~ 105 (194) T 1mf7_A 38 KKS-------KTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNGAR-----KN 105 (194) T ss_dssp CCT-------TEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCC-----TT T ss_pred CCC-------CCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-----CC T ss_conf 768-------836999999621057630455454899999985010135996420799999998864542676-----78 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCCC--CEEEECCHHHHHH Q ss_conf 65169981588778777776631489999999978988999995479---755899999851998--1899469899999 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSSG--QFFAVNDSRELLE 378 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~~--~yy~a~~~~~L~~ 378 (398) ..+++||+|||+.+...... ..+.+.+++.+++++.+.+..+ ..+.++|+.+|..++ ++|.+.+.++|.+ T Consensus 106 ~~~~iiliTDG~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~~ia~~~~g~~~~~~~~~~~l~~ 180 (194) T 1mf7_A 106 AFKILVVITDGEKFGDPLGY-----EDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKT 180 (194) T ss_dssp SEEEEEEEESSCCBSCSSCG-----GGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGG T ss_pred CEEEEEEEECCCCCCCCHHH-----HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHH T ss_conf 50389998369988980329-----9999999978999999997887666357999999866998661899389999999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999987512 Q gi|254781108|r 379 SFDKITDKIQEQ 390 (398) Q Consensus 379 aF~~I~~~i~~~ 390 (398) +|++|...|... T Consensus 181 ~~~~i~~~i~~~ 192 (194) T 1mf7_A 181 IQNQLREKIFCI 192 (194) T ss_dssp GHHHHHHHHHTT T ss_pred HHHHHHHHHCCC T ss_conf 999998764027 No 19 >>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315) Probab=99.49 E-value=1.3e-14 Score=105.70 Aligned_cols=182 Identities=17% Similarity=0.217 Sum_probs=128.5 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) ..+.++++|+|.||||... ++...+.++..++..+ T Consensus 4 ~~~~div~viD~SgSM~~~---------------------------------------------~~~~~k~~~~~~~~~l 38 (191) T 3k6s_A 4 RQEQDIVFLIDGSGSISSR---------------------------------------------NFATMMNFVRAVISQF 38 (191) T ss_dssp CCCEEEEEEEECCTTSCSH---------------------------------------------HHHHHHHHHHHHHHSS T ss_pred CCCCCEEEEEECCCCCCCC---------------------------------------------HHHHHHHHHHHHHHCC T ss_conf 7663169998257854652---------------------------------------------1688889999887503 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 20276877652134654126776543112356899999999735-77888744588999999961134666665667666 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNK-LNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~-l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398) .. ...+.+.+.|+.............+.......+.. ..++++|+.+.++..+...+...... .... T Consensus 39 ~~-------~~~~v~ii~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-----~~~~ 106 (191) T 3k6s_A 39 QR-------PSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYG-----ARRD 106 (191) T ss_dssp CS-------SSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTT-----CCSS T ss_pred CC-------CCEEEEEEECCCCCEEEEECHHCCCCCCHHHHHHEEEECCCCEEEEECHHHHHHHHCCCCCC-----CCCC T ss_conf 78-------86189999536661179861131033303434320562257501221133456642363447-----8889 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC---CCHHHHHHHHHCCC--CCEEEECCHHHHHH Q ss_conf 65169981588778777776631489999999978988999995479---75589999985199--81899469899999 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP---PEGQDLLRKCTDSS--GQFFAVNDSRELLE 378 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~---~~~~~~l~~cAs~~--~~yy~a~~~~~L~~ 378 (398) .+|+|||+|||+.+.... ....+-+.+|+.++.||+|+|+.. ..+...|+..|..+ .++|.+++.++|.+ T Consensus 107 ~~~~ivlitDG~~~~~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~~ 181 (191) T 3k6s_A 107 AAKILIVITDGKKEGDSL-----DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKD 181 (191) T ss_dssp SEEEEEEEESSCCBSCSS-----CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGS T ss_pred CCEEEEEEECCCCCCCCC-----CHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCHHH T ss_conf 846999995686345753-----101111013304845899983354456431211000024798542488613320010 Q ss_pred HHHHHHHHHH Q ss_conf 9999999875 Q gi|254781108|r 379 SFDKITDKIQ 388 (398) Q Consensus 379 aF~~I~~~i~ 388 (398) +|++|.+.|. T Consensus 182 ~~~~i~~~ic 191 (191) T 3k6s_A 182 IQNQLKEKIF 191 (191) T ss_dssp STTTHHHHHH T ss_pred HHCCCCCCCE T ss_conf 1002235522 No 20 >>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* (B:110-351) Probab=99.44 E-value=3.6e-14 Score=103.02 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=106.8 Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 54313575055666666766631012331023012688765403101343220112555333410002456655410220 Q gi|254781108|r 147 AISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQK 226 (398) Q Consensus 147 ~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 226 (398) |+|++||+|.||||... ++.+|.++..+++.+.. T Consensus 2 PiDivfviD~SgSM~~~----------------------------------------------i~~~K~~i~~~~~~~~~ 35 (242) T 2vdr_B 2 PVDIYYLMDLSYSMKDD----------------------------------------------LWSIQNLGTKLATQMRK 35 (242) T ss_dssp CEEEEEEEECSGGGGGG----------------------------------------------HHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCHHHH----------------------------------------------HHHHHHHHHHHHHHHHH T ss_conf 86679999468687999----------------------------------------------99999999999999985 Q ss_pred CCCCCCCCCEEEEEEECCCCCC----------------------------CCCCCCCCCCHHHHHHHHHCCCCCCCCCHH Q ss_conf 2768776521346541267765----------------------------431123568999999997357788874458 Q gi|254781108|r 227 AIQEKKNLSVRIGTIAYNIGIV----------------------------GNQCTPLSNNLNEVKSRLNKLNPYENTNTY 278 (398) Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~ 278 (398) ...+ .|.+.+.|.+... .....+++.+...++..|+.+.+.|||... T Consensus 36 ~~~~-----~r~~~v~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~gGtd~~ 110 (242) T 2vdr_B 36 LTSN-----LRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAP 110 (242) T ss_dssp HCTT-----EEEEEEEECCCSSTTTSCCCSTHHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCCCSBSS T ss_pred HCCC-----CEEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHEECCCCCCCC T ss_conf 2867-----36977650202456522346665505866566665667633010266778899999998622153789877 Q ss_pred HHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCH--HHHHHHHHHHHCCCEEEEEEECCCCCHHH Q ss_conf 899999996113466-666566766665169981588778777776631--48999999997898899999547975589 Q gi|254781108|r 279 PAMHHAYRELYNEKE-SSHNTIGSTRLKKFVIFITDGENSGASAYQNTL--NTLQICEYMRNAGMKIYSVAVSAPPEGQD 355 (398) Q Consensus 279 ~gl~~a~~~l~~~~~-~~~~~~~~~~~~k~iillTDG~~~~~~~~~~~~--~~~~~c~~~K~~gi~IytIg~~~~~~~~~ 355 (398) +++.+|.+.+..... .. ..++.+|+|||+|||..+......... ........+...++.+++++++.+ .... T Consensus 111 e~~~~a~~~~~~~~~~~~----~r~~~~k~iilitD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 185 (242) T 2vdr_B 111 EGGFDAIMQATVCDEKIG----WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYP-SLGL 185 (242) T ss_dssp BCHHHHHHHHHHCHHHHT----CCTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCC-CHHH T ss_pred CCHHHHHHHHHHHHCCCC----CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CHHH T ss_conf 339999999986110167----78796699999886874435676533331478875032678864544547788-9999 Q ss_pred HHHHHHCCCCC-EEEECCHHHHHHHHHHHHHHHHHCEEEE Q ss_conf 99998519981-8994698999999999999875124573 Q gi|254781108|r 356 LLRKCTDSSGQ-FFAVNDSRELLESFDKITDKIQEQSVRI 394 (398) Q Consensus 356 ~l~~cAs~~~~-yy~a~~~~~L~~aF~~I~~~i~~~r~~~ 394 (398) +++..+....+ ++.+++ +..++|+.|.+.+....+.+ T Consensus 186 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 223 (242) T 2vdr_B 186 MTEKLSQKNINLIFAVTE--NVVNLYQNYSELIPGTTVGV 223 (242) T ss_dssp HHHHHHHTTCEEEEEEEG--GGHHHHHHHHTTSTTCEEEE T ss_pred HHHHHHHCCCEEEEEECH--HHHHHHHHHHHHCCCCEEEE T ss_conf 999998629379999457--88889999987567654433 No 21 >>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} (A:) Probab=99.34 E-value=1.6e-12 Score=93.15 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=126.5 Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022 Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398) Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398) .|+|+++|+|.||||+.. ....+.++..++..+. T Consensus 2 ~pvDivfviD~SgSM~~~----------------------------------------------~~~~k~~~~~~i~~l~ 35 (212) T 2iue_A 2 NSVDLYFLMGLSGSAQGH----------------------------------------------LSNVQTLGSDLLKALN 35 (212) T ss_dssp CCEEEEEEEECCGGGTTT----------------------------------------------HHHHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCHHHH----------------------------------------------HHHHHHHHHHHHHHHH T ss_conf 856899999787131779----------------------------------------------9999999999999987 Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 02768776521346541267765431123568999999997357788874458899999996113466666566766665 Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLK 305 (398) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~ 305 (398) .... ..+.+...|.+... ....+++.+...+...|+.|.+.|+|+...++..+...+....... .....+ T Consensus 36 ~~~~-----~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~ggt~~~~~~~~a~~~~~~~~~~~----~~~~~~ 105 (212) T 2iue_A 36 EISR-----SGRIGFGSIVNMTF-QHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEI----GWRNGT 105 (212) T ss_dssp HHCS-----CEEEEEEEESSSCE-EEEEEEESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHH----TCCSSE T ss_pred HCCC-----CCCCCEEEECCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCCCCC T ss_conf 4374-----43201344046543-2367766679999998742212578988831999999999856752----898774 Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC----CCHHHHHHHHHCCCCCEEEECCHHHHHHHHH Q ss_conf 169981588778777776631489999999978988999995479----7558999998519981899469899999999 Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAP----PEGQDLLRKCTDSSGQFFAVNDSRELLESFD 381 (398) Q Consensus 306 k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~----~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~ 381 (398) |+|||+|||..+....... ......+..++.++.++++.+ ......+......++.++.......+.+.|+ T Consensus 106 ~~iilltdg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (212) T 2iue_A 106 RFLVLVTDNDFHLAKDKTL-----GTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYE 180 (212) T ss_dssp EEEEEECSSCBCCTTGGGG-----GTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHH-----HHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHH T ss_conf 6999987886344551134-----33303468716875464456666567758999999987098289995656689999 Q ss_pred HHHHHHHHCEEEEC Q ss_conf 99998751245734 Q gi|254781108|r 382 KITDKIQEQSVRIA 395 (398) Q Consensus 382 ~I~~~i~~~r~~~~ 395 (398) .|++.+......+. T Consensus 181 ~i~~~~~~~~~~~~ 194 (212) T 2iue_A 181 KLTTFIPKLTIGEL 194 (212) T ss_dssp HHHHHSTTCEEEEE T ss_pred HHHHHCCCCEEEEH T ss_conf 99997698577413 No 22 >>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} (A:365-538) Probab=99.26 E-value=2.8e-10 Score=79.69 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=96.6 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 56543135750556666667666310123310230126887654031013432201125553334100024566554102 Q gi|254781108|r 145 NLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSI 224 (398) Q Consensus 145 ~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 224 (398) ..++++++++|.||||.....+... ...+.+...+.... T Consensus 2 ~~~~~vv~liD~SgSM~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~ 40 (174) T 1yvr_A 2 PTGKRFLLAIDVSASMNQRVLGSIL-----------------------------------------NASVVAAAMCMLVA 40 (174) T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSC-----------------------------------------BHHHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCCCCCCCCC-----------------------------------------CHHHHHHHHHHHHH T ss_conf 7786179999775554285007773-----------------------------------------69999999999987 Q ss_pred HHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 20276877652134654126776543112356899999999735778887445889999999611346666656676666 Q gi|254781108|r 225 QKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRL 304 (398) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~ 304 (398) .. ..+.+.+.|+....... .+...+...+...+.. .+.|+|+++.+|.++.+.+.. T Consensus 41 ~~--------~~~v~li~F~~~~~~~~-~~~~~~~~~~~~~l~~-~~~g~T~~~~al~~a~~~~~~-------------- 96 (174) T 1yvr_A 41 RT--------EKDSHMVAFSDEMLPCP-ITVNMLLHEVVEKMSD-ITMGSTDCALPMLWAQKTNTA-------------- 96 (174) T ss_dssp HH--------CSSEEEEEESSSEECCS-CCTTSCHHHHHHHHTT-CCCSCCCTTHHHHHHHHTTCC-------------- T ss_pred HH--------CCCCEEEEECCCEEECC-CCCCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCC-------------- T ss_conf 42--------59977999769658789-9865409999999853-678983599999999962656-------------- Q ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 51699815887787777766314899999999789889999954797 Q gi|254781108|r 305 KKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351 (398) Q Consensus 305 ~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~ 351 (398) ++++|++|||+.+.+.. ........++.++..+|.+|+||++.+. T Consensus 97 ~~~ii~iTDG~~~~~~~--~~~~~~~~~~~~~~~~v~~~~vg~g~~~ 141 (174) T 1yvr_A 97 ADIFIVFTDCETNVEDV--HPATALKQYREKMGIPAKLIVCAMTSNG 141 (174) T ss_dssp CSEEEEEECCCCCSSSC--CHHHHHHHHHHHHTCCCEEEEEECSSSS T ss_pred CCEEEEECCCCCCCCCC--CHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 88899971798678988--9999999999984899749999766888 No 23 >>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} (A:53-64,A:359-535) Probab=99.23 E-value=4.1e-10 Score=78.65 Aligned_cols=175 Identities=12% Similarity=-0.011 Sum_probs=110.5 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 45565431357505566666676663101233102301268876540310134322011255533341000245665541 Q gi|254781108|r 143 SENLAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVN 222 (398) Q Consensus 143 ~~~~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 222 (398) ....+.++++++|.||||........ +....+.+...+.. T Consensus 12 ~~~~~~~iv~vlD~SgSM~~~~~~~~----------------------------------------k~~~~~~~a~~~~~ 51 (189) T 2nvo_A 12 HQPANTRHLLALDVSGSMTCGDVAGV----------------------------------------PGLTPNMAAAAMSL 51 (189) T ss_dssp CCCCCSEEEEEECCSGGGGSCCGGGC----------------------------------------TTCCHHHHHHHHHH T ss_pred HCCCCCCEEEEEECHHHCCCCCCCCC----------------------------------------CHHHHHHHHHHHHH T ss_conf 78878717999977342046400587----------------------------------------31879999999999 Q ss_pred HHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 02202768776521346541267765431123568999999997357788874458899999996113466666566766 Q gi|254781108|r 223 SIQKAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGST 302 (398) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~ 302 (398) .... ...+.+.+.|+.... ...+++.+.......+..+.+.|+|++..||..+.+.+.. T Consensus 52 ~~~~-------~~~~v~li~F~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~~~~~------------ 110 (189) T 2nvo_A 52 IALR-------TEPDALTMGFAEQFR--PLGITPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLD------------ 110 (189) T ss_dssp HHHH-------HSSEEEEEEEBSSEE--ECCCCTTCCHHHHHHHTCCSSBCCCCTTHHHHHHHHTTCC------------ T ss_pred HHHC-------CCCCCEEEEECCCCE--ECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC------------ T ss_conf 9807-------589817998789517--7588887329999999854578985699999999846455------------ Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHH Q ss_conf 66516998158877877777663148999999997898899999547975589999985199818994698999999999 Q gi|254781108|r 303 RLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDK 382 (398) Q Consensus 303 ~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~ 382 (398) ++.++++|||+.+.+.. ...........+++.+|.+|+|+++...... +.. ...+.++.+..... .|+. T Consensus 111 --~~~vilitDg~~~~~~~--~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~--~~~--~~~~~~~~~~~~~~---~~~~ 179 (189) T 2nvo_A 111 --VDTFVVYTDNETWAGQV--HPTVALDQYAQKMGRAPKLIVVGLTATEFSI--ADP--QRRDMLDVVGFDAA---APNV 179 (189) T ss_dssp --CSEEEEEESSCCCCCSS--CHHHHHHHHHHHHSCCCEEEEEETTCSCCCC--SCT--TCSSEEEEEECCTT---HHHH T ss_pred --CCEEEEECCCCCCCCCC--CHHHHHHHHHHHCCCCCEEEEEEECCCCCCC--CCC--CCCCEEEEECCCHH---HHHH T ss_conf --89899980799778999--9999999999852899759999803888887--888--99994787268889---9999 Q ss_pred HHHHHHH Q ss_conf 9998751 Q gi|254781108|r 383 ITDKIQE 389 (398) Q Consensus 383 I~~~i~~ 389 (398) |++.... T Consensus 180 i~~~~~g 186 (189) T 2nvo_A 180 MTAFARG 186 (189) T ss_dssp HHHHHTT T ss_pred HHHHHCC T ss_conf 9998668 No 24 >>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* (B:109-352) Probab=99.13 E-value=2.4e-11 Score=86.08 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=49.0 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCCCCCCC Q ss_conf 11235689999999973577888744588999999961134-6666656676666516998158877877 Q gi|254781108|r 251 QCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNE-KESSHNTIGSTRLKKFVIFITDGENSGA 319 (398) Q Consensus 251 ~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~-~~~~~~~~~~~~~~k~iillTDG~~~~~ 319 (398) ...+++.+...+...|+.+.+.|||...+++..|.+..... +...| ..+.+|+|||+|||..... T Consensus 84 ~~~~~t~~~~~~~~~i~~~~~~GG~D~~E~~~~al~~a~~~~~~~~~----~~~~~k~iilitDa~~h~~ 149 (244) T 3fcs_B 84 HVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW----RNDASHLLVFTTDAKTHIA 149 (244) T ss_dssp EEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC----CSSSEEEEEEEESSCBCCT T ss_pred EECCCCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCC----CCCCEEEEEEECCCCCCCC T ss_conf 42126777899999876266337878865105455554313022565----6785399999846763215 No 25 >>3k6s_B Integrin beta-2; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* (B:102-342) Probab=99.13 E-value=6e-11 Score=83.69 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=70.0 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC------ Q ss_conf 11235689999999973577888744588999999961134666665667666651699815887787777766------ Q gi|254781108|r 251 QCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQN------ 324 (398) Q Consensus 251 ~~~~lt~~~~~~~~~I~~l~~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~------ 324 (398) ...+++.+...+..+|+.+.+.||++..+++..|.......... ...++..|+|||+|||.......... T Consensus 83 ~~~~~t~~~~~~~~~i~~~~a~GGgD~~E~~~~al~~a~~~~~~----~~~~~~~k~iilitDa~~h~~~~~~~~~~~~~ 158 (241) T 3k6s_B 83 HVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEE----IGWRNVTRLLVFATDDGFHFAGDGKLGAILTP 158 (241) T ss_dssp EEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHH----HCCCSSCCEEEEECSSCCCCTTGGGGGTCCCC T ss_pred EECCCCCCHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHEECCC----CCCCCCEEEEEEECCCCCCCCCCCCEEEEECC T ss_conf 32467667899999986346215877876214243321000232----34325438999986687320566520236427 Q ss_pred -------------------CHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEE Q ss_conf -------------------31489999999978988999995479755899999851-99818994 Q gi|254781108|r 325 -------------------TLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAV 370 (398) Q Consensus 325 -------------------~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a 370 (398) ........+.++.+++..+.+.-+ ....+++..+. .++.++.. T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 221 (241) T 3k6s_B 159 NDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTS---RMVKTYEKLTEIIPKSAVGE 221 (241) T ss_dssp CCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECG---GGHHHHHHHHHHSSSCCEEE T ss_pred CCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC---CHHHHHHHHHHHCCCCEEEE T ss_conf 8885375588445677577888899999998629469999644---22669999987568634776 No 26 >>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B (B:171-421) Probab=90.05 E-value=1 Score=22.27 Aligned_cols=113 Identities=8% Similarity=0.046 Sum_probs=75.4 Q ss_pred CCCCCCCCCHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 3112356899999999735778------8874458899999996113466666566766665169981588778777776 Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNP------YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQ 323 (398) Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~------~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~ 323 (398) ....++...+..+...++.|.. ..++..+.++..+...|..... ...|+++++|..+.+...- T Consensus 92 ~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~G~Al~~a~~ll~~~~~-----------gG~Ii~f~sg~P~~G~g~~ 160 (251) T 3efo_B 92 GFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-----------PGKLFIFHSSLPTAEAPGK 160 (251) T ss_dssp SSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-----------CEEEEEEECSCCCSSSTTC T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-----------CCEEEEEECCCCCCCCCCC T ss_conf 56534799899999999843564167888764379999999999724589-----------9608999747998789854 Q ss_pred ---------------------CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCH Q ss_conf ---------------------631489999999978988999995479755899999851-99818994698 Q gi|254781108|r 324 ---------------------NTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVNDS 373 (398) Q Consensus 324 ---------------------~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~~ 373 (398) ...--..++..+.+.||.+-...+..+.-+-..|..++. ++|+.|.-++- T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~~l~~l~~l~~~TgG~i~~y~~f 232 (251) T 3efo_B 161 LKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNF 232 (251) T ss_dssp CCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTC T ss_pred CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCC T ss_conf 456553334676044542151068999999999975956999973487667799999998659679995898 No 27 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235) Probab=87.33 E-value=1.6 Score=21.15 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=64.2 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHH Q ss_conf 66651699815887787777766314899999999789889999954797558999998519981899469899999999 Q gi|254781108|r 302 TRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFD 381 (398) Q Consensus 302 ~~~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~ 381 (398) ++.+|+-|+-+-++.+. ......+-+.++..|+++....+.....-...++..+...+-.|-.++. -+.+.++ T Consensus 14 P~~k~vgvly~~~e~~s------~~~~~~l~~~a~~~Gi~l~~~~v~~~~di~~~~~~~~~~~dai~~~~d~-~v~s~~~ 86 (118) T 3lft_A 14 PNVKTIGALYSSSEDNS------KTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVXTSKVDAIWVPIDN-TIASGFP 86 (118) T ss_dssp TTCCEEEEEEETTCHHH------HHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEECSCH-HHHHTHH T ss_pred CCCCEEEEECCCCCHHH------HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCH-HHHHHHH T ss_conf 78864689669753129------9999999986664175687504666799999998367886199973870-6888999 Q ss_pred HHHHHHHHCEEEE Q ss_conf 9999875124573 Q gi|254781108|r 382 KITDKIQEQSVRI 394 (398) Q Consensus 382 ~I~~~i~~~r~~~ 394 (398) .|.....+.+|=+ T Consensus 87 ~i~~~a~~~~iPv 99 (118) T 3lft_A 87 TVVSSNQSSKKPI 99 (118) T ss_dssp HHHHHTTTTCCCE T ss_pred HHHHHHCCCCCCE T ss_conf 9998520247867 No 28 >>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B (A:155-399) Probab=86.79 E-value=1.7 Score=20.96 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=83.4 Q ss_pred CCCCCCCCCHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 3112356899999999735778------8874458899999996113466666566766665169981588778777776 Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLNP------YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQ 323 (398) Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~~------~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~ 323 (398) ....++...+..+.+.++.|.. ..++..+.++..+...|.+.. -.|++.++|..+.+...- T Consensus 86 ~~l~~~~~~~~~i~~~L~~l~~~~~~~~~~~~c~g~Al~~a~~ll~~~g-------------GkIi~f~~g~p~~G~G~l 152 (245) T 3eh1_A 86 SLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTG-------------GRVSVFQTQLPSLGAGLL 152 (245) T ss_dssp GTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC-------------EEEEEEECSCCCSSTTCC T ss_pred CEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC-------------CEEEEEECCCCCCCCCEE T ss_conf 5785079989999999985344335877763109999999999888439-------------879999468997789723 Q ss_pred --------------------CCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECC------HHHH Q ss_conf --------------------631489999999978988999995479755899999851-9981899469------8999 Q gi|254781108|r 324 --------------------NTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVND------SREL 376 (398) Q Consensus 324 --------------------~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~------~~~L 376 (398) ...--..++..+.++||.|-...+....-+-..|..++. ++|..|..++ ..++ T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~dl~tl~~l~~~TgG~i~~y~~f~~~~~~~~~ 232 (245) T 3eh1_A 153 QSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQA 232 (245) T ss_dssp CCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHH T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHH T ss_conf 33667555686346654324779999999999975966999995487678498998998578459980675521265789 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999875 Q gi|254781108|r 377 LESFDKITDKIQ 388 (398) Q Consensus 377 ~~aF~~I~~~i~ 388 (398) ...++++.+.+. T Consensus 233 ~~l~~dl~~~l~ 244 (245) T 3eh1_A 233 EKLQKDLKRYLT 244 (245) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999865 No 29 >>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:1-54,A:291-409) Probab=70.49 E-value=4 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=14.6 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 999999997898899999547975 Q gi|254781108|r 329 LQICEYMRNAGMKIYSVAVSAPPE 352 (398) Q Consensus 329 ~~~c~~~K~~gi~IytIg~~~~~~ 352 (398) .-+++++|++|++||-.-+|-++. T Consensus 32 ~~~~~~a~~~g~~~~~l~ig~pd~ 55 (173) T 2gb3_A 32 VPFAEXAKKRGVRIHHLNIGQPDL 55 (173) T ss_dssp HHHHHHHHHTTCEEEECSSCCCCC T ss_pred HHHHHHHHHCCCCEEECCCCCCCC T ss_conf 999999997699889898988996 No 30 >>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} (A:134-264) Probab=56.34 E-value=8.8 Score=16.69 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=28.9 Q ss_pred HHHHCCCCCE-EEECCHHHHHHHHHHHHHHHHHCEEEE Q ss_conf 9985199818-994698999999999999875124573 Q gi|254781108|r 358 RKCTDSSGQF-FAVNDSRELLESFDKITDKIQEQSVRI 394 (398) Q Consensus 358 ~~cAs~~~~y-y~a~~~~~L~~aF~~I~~~i~~~r~~~ 394 (398) +.|.+.+|.| |...+.+++...|+.|.++++.++-+. T Consensus 91 Rrc~tGeG~f~f~t~~~~~i~~~~~~~~~~~~~~~~~~ 128 (131) T 1qqg_A 91 RSAVTGPGEFWMQVDDSVVAQNMHETILEAMRAMSDEF 128 (131) T ss_dssp TTSTTCSEEEEEECSCHHHHHHHHHHHHHHHHGGGC-- T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 53799983399982894799999999999999757763 No 31 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:45-75,A:314-427) Probab=38.11 E-value=2.9 Score=19.54 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=41.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCEEE Q ss_conf 14899999999789889999954797558999998519981899469899999999999987512457 Q gi|254781108|r 326 LNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSVR 393 (398) Q Consensus 326 ~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I~~~i~~~r~~ 393 (398) .....+|+.++++||.+..+.+.....+...++-|.+. . +.-.+-+.|.+++++|.+++....-+ T Consensus 75 ~~~~~l~~~L~~~GI~v~~~~~PavP~~~~~iRis~t~-~--~T~edId~li~aL~~i~~~l~~~~~~ 139 (145) T 2w8t_A 75 EQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICA-E--HTPAQIQTVLGMFQAAGRAVGVIGLE 139 (145) T ss_dssp HHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCT-T--CCHHHHHHHHHHHHHHHHHHTCC--- T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECC-C--CCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999998389418778999889997069998475-5--89999999999999999984967422 No 32 >>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} (B:298-550) Probab=34.87 E-value=24 Score=14.11 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=72.2 Q ss_pred CCCCCCCCCHHHHHHHHHCCC------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 311235689999999973577------88874458899999996113466666566766665169981588778777776 Q gi|254781108|r 250 NQCTPLSNNLNEVKSRLNKLN------PYENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQ 323 (398) Q Consensus 250 ~~~~~lt~~~~~~~~~I~~l~------~~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~ 323 (398) ....++...+..+.+.++.|. ...++..+.++..+...|... .-.|++.++|-.|.+...- T Consensus 94 ~~l~~~~~~~~~i~~ll~~l~~~~~~~~~~~~~~G~Al~~a~~ll~~~-------------gG~Ii~f~~g~p~~G~G~l 160 (253) T 1m2v_B 94 SMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-------------GGKIIVVSGTLPNLGIGKL 160 (253) T ss_dssp SSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT-------------CEEEEEEESSCCCSSTTCC T ss_pred CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-------------CCEEEEEECCCCCCCCCCC T ss_conf 644316998999999998616641688887213999999999987627-------------9749999567986788622 Q ss_pred C---------------------CHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECC Q ss_conf 6---------------------31489999999978988999995479755899999851-9981899469 Q gi|254781108|r 324 N---------------------TLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVND 372 (398) Q Consensus 324 ~---------------------~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~ 372 (398) . ..--..++..+.+.||.|-...+..+.-+-..|..++. ++|..|.-++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~fY~~l~~~~~~~~isvdif~~~~~~~~l~~l~~l~~~TgG~i~~y~~ 231 (253) T 1m2v_B 161 QRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 231 (253) T ss_dssp CCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEES T ss_pred CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCC T ss_conf 23665433457413454146137999999999998691799998048777708777776516846998078 No 33 >>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* (A:) Probab=34.46 E-value=24 Score=14.07 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=28.7 Q ss_pred HHHHHHHHCCCEEEEEEECCCCC------HHHHHHHHHCC-CCCEEEECCHHHHHHHHHHHHHH Q ss_conf 99999997898899999547975------58999998519-98189946989999999999998 Q gi|254781108|r 330 QICEYMRNAGMKIYSVAVSAPPE------GQDLLRKCTDS-SGQFFAVNDSRELLESFDKITDK 386 (398) Q Consensus 330 ~~c~~~K~~gi~IytIg~~~~~~------~~~~l~~cAs~-~~~yy~a~~~~~L~~aF~~I~~~ 386 (398) .+..+....||++.+|.-+.-.. ..+..+..... |- -..-+++|+.++.--++.. T Consensus 170 ~la~e~~~~gI~vn~i~pg~~~t~~~~~~~~~~~~~~~~~~~~--~r~~~~eeva~~~~~L~s~ 231 (248) T 2pnf_A 170 SLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPL--GRFGSPEEVANVVLFLCSE 231 (248) T ss_dssp HHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTT--SSCBCHHHHHHHHHHHHSG T ss_pred HHHHHHCHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHCC T ss_conf 9999857438289999628897720000599999999846998--8987999999999999583 No 34 >>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:) Probab=34.44 E-value=24 Score=14.07 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=10.7 Q ss_pred HHHHHCCCEEEEEEEC Q ss_conf 9999789889999954 Q gi|254781108|r 333 EYMRNAGMKIYSVAVS 348 (398) Q Consensus 333 ~~~K~~gi~IytIg~~ 348 (398) ..+...++.+.+|.-| T Consensus 191 ~~~~~~~~~~~~i~pG 206 (269) T 3gk3_A 191 LETAKRGITVNTVSPG 206 (269) T ss_dssp HHHGGGTEEEEEEEEC T ss_pred HHCCCCCEEEEEEECC T ss_conf 7578878699996015 No 35 >>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} (A:) Probab=28.15 E-value=31 Score=13.43 Aligned_cols=78 Identities=8% Similarity=-0.007 Sum_probs=35.8 Q ss_pred EEEEECCCCCCCCCCCCCCCH---------HHHHHHHHHHHCCCEEEEEEECC---C---CCHHHHHHHHHCCCCCEEEE Q ss_conf 169981588778777776631---------48999999997898899999547---9---75589999985199818994 Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTL---------NTLQICEYMRNAGMKIYSVAVSA---P---PEGQDLLRKCTDSSGQFFAV 370 (398) Q Consensus 306 k~iillTDG~~~~~~~~~~~~---------~~~~~c~~~K~~gi~IytIg~~~---~---~~~~~~l~~cAs~~~~yy~a 370 (398) ..||+++-............+ -+..++.++...||++.+|.=|. + ....+.++..... --.-.. T Consensus 173 g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-~p~~r~ 251 (285) T 2c07_A 173 GRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISN-IPAGRM 251 (285) T ss_dssp EEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTT-CTTSSC T ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHCCHHHHHHHHHC-CCCCCC T ss_conf 2999987766567899977999999999999999999853559699998357435802332599999999846-998898 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 69899999999999 Q gi|254781108|r 371 NDSRELLESFDKIT 384 (398) Q Consensus 371 ~~~~~L~~aF~~I~ 384 (398) -+++|+.++.--+. T Consensus 252 ~~pedva~~v~fL~ 265 (285) T 2c07_A 252 GTPEEVANLACFLS 265 (285) T ss_dssp BCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 49999999999994 No 36 >>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} (A:) Probab=28.03 E-value=31 Score=13.41 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=35.5 Q ss_pred EEEEECCCCCCCCCCCCCCCH-----H----HHHHHHHHHHCCCEEEEEEECCCCCH------HHHHH-HHHCCCCCEEE Q ss_conf 169981588778777776631-----4----89999999978988999995479755------89999-98519981899 Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTL-----N----TLQICEYMRNAGMKIYSVAVSAPPEG------QDLLR-KCTDSSGQFFA 369 (398) Q Consensus 306 k~iillTDG~~~~~~~~~~~~-----~----~~~~c~~~K~~gi~IytIg~~~~~~~------~~~l~-~cAs~~~~yy~ 369 (398) ..||+++-.....+......+ . +..+..+++..||++.+|.-|.=... ....+ ..-..+. -. T Consensus 157 g~iI~~sS~~~~~~~~~~~~Y~~sK~al~~l~~~la~el~~~gIrvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~--~~ 234 (270) T 3ftp_A 157 GRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPL--GR 234 (270) T ss_dssp EEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTT--CS T ss_pred CEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCHHHHHHHHHCCCC--CC T ss_conf 4899980767647799978999999999999999999964566479898538786833233799999999857998--89 Q ss_pred ECCHHHHHHHHHHHHH Q ss_conf 4698999999999999 Q gi|254781108|r 370 VNDSRELLESFDKITD 385 (398) Q Consensus 370 a~~~~~L~~aF~~I~~ 385 (398) ..+++|+.++.--++. T Consensus 235 ~~~~~dva~~~~~L~s 250 (270) T 3ftp_A 235 LGSPEDIAHAVAFLAS 250 (270) T ss_dssp CBCHHHHHHHHHHHHS T ss_pred CCCHHHHHHHHHHHHC T ss_conf 9999999999999958 No 37 >>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* (A:) Probab=25.61 E-value=34 Score=13.15 Aligned_cols=57 Identities=5% Similarity=0.063 Sum_probs=31.0 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCC-------HHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 8999999997898899999547975-------5899999851-998189946989999999999998 Q gi|254781108|r 328 TLQICEYMRNAGMKIYSVAVSAPPE-------GQDLLRKCTD-SSGQFFAVNDSRELLESFDKITDK 386 (398) Q Consensus 328 ~~~~c~~~K~~gi~IytIg~~~~~~-------~~~~l~~cAs-~~~~yy~a~~~~~L~~aF~~I~~~ 386 (398) +..++.+++..||++.+|.-|.=.+ ..+..+.... .|-. ..-+++|+.+++--++.+ T Consensus 166 t~~lA~e~~~~gIrvn~i~PG~i~T~~~~~~~~~~~~~~~~~~~p~~--r~~~peevA~~~~~L~s~ 230 (247) T 2jah_A 166 SETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEXYEQRISQI--RKLQAQDIAEAVRYAVTA 230 (247) T ss_dssp HHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHTTTS--CCBCHHHHHHHHHHHHHS T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHCC T ss_conf 99999984611949999971989674421258647899998238988--978999999999999849 No 38 >>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:1-109,A:247-284) Probab=25.55 E-value=34 Score=13.14 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=48.2 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH Q ss_conf 65169981588778777776631489999999978988999995479755899999851998189946989999999999 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTDSSGQFFAVNDSRELLESFDKI 383 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs~~~~yy~a~~~~~L~~aF~~I 383 (398) ..|+.++...|.-+...|. .....++-...|+.||++-.+--..++.-...++..+..+-..--+. ..++.+++.++ T Consensus 4 ~~kVa~v~~~g~~~D~sfn--~s~~~G~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~a~~g~dlIi~~-g~~~~~~~~~v 80 (147) T 2fqx_A 4 DFVVGMVTDSGDIDDKSFN--QQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVAC-GSFLVEAVIET 80 (147) T ss_dssp CCEEEEEESSSCTTSSSHH--HHHHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEE-STTTHHHHHHH T ss_pred CCEEEEEECCCCCCCCCHH--HHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHH T ss_conf 7589999878899987789--99999999999985985999945998999999999997799989991-75434689999 Q ss_pred HHHHHHCE Q ss_conf 99875124 Q gi|254781108|r 384 TDKIQEQS 391 (398) Q Consensus 384 ~~~i~~~r 391 (398) +.+=.+.+ T Consensus 81 A~~yPd~~ 88 (147) T 2fqx_A 81 SARFPKQK 88 (147) T ss_dssp HHHCTTSC T ss_pred HHHCCCCE T ss_conf 98889987 No 39 >>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} (A:173-291) Probab=25.03 E-value=35 Score=13.08 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=31.7 Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHH Q ss_conf 65169981588778777776631489999999978988999995479755899999 Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRK 359 (398) Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~ 359 (398) ..|++++|+.|.+ .-+.--++++|.+|..+.|..+....+..+. T Consensus 7 ~~kvlvllSGGid------------Svaa~ll~k~G~~V~~l~~~~~~~~~e~~~~ 50 (119) T 1vbk_A 7 EGRMIGILHDELS------------ALAIFLMMKRGVEVIPVYIGKDDKNLEKVRS 50 (119) T ss_dssp TCEEEEECSSHHH------------HHHHHHHHHBTCEEEEEEESCSSHHHHHHHH T ss_pred CCCEEEEECCCCC------------HHHHHHHHHCCCEEEEEEECCCHHHHHHHHH T ss_conf 6726886147742------------9999999866988999994796889999999 No 40 >>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} (A:) Probab=24.23 E-value=36 Score=12.99 Aligned_cols=79 Identities=6% Similarity=-0.053 Sum_probs=38.2 Q ss_pred EEEEECCCCCCCCCCCCCCCHH---------HHHHHHHHHHCCCEEEEEEECCCCC---------HHHHHHHHHCCCCCE Q ss_conf 1699815887787777766314---------8999999997898899999547975---------589999985199818 Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLN---------TLQICEYMRNAGMKIYSVAVSAPPE---------GQDLLRKCTDSSGQF 367 (398) Q Consensus 306 k~iillTDG~~~~~~~~~~~~~---------~~~~c~~~K~~gi~IytIg~~~~~~---------~~~~l~~cAs~~~~y 367 (398) ..||+++-.....+......+. +..++.+++..||++..|.-|.-.. .....+... ..-.. T Consensus 135 g~Ii~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~pG~i~t~~~~~~~~~~~~~~~~~~-~~~~~ 213 (251) T 1zk4_A 135 ASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQR-TKTPM 213 (251) T ss_dssp EEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTST-TTCTT T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCHHHHHHHH-HCCCC T ss_conf 45404652435778874066787889998668999999860799579999973857687776167769999998-57987 Q ss_pred EEECCHHHHHHHHHHHHH Q ss_conf 994698999999999999 Q gi|254781108|r 368 FAVNDSRELLESFDKITD 385 (398) Q Consensus 368 y~a~~~~~L~~aF~~I~~ 385 (398) ....+++|+.++.--++. T Consensus 214 ~r~~~peeva~~v~fL~s 231 (251) T 1zk4_A 214 GHIGEPNDIAYICVYLAS 231 (251) T ss_dssp SSCBCHHHHHHHHHHHHS T ss_pred CCCCCHHHHHHHHHHHHC T ss_conf 788699999999999957 No 41 >>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:) Probab=23.58 E-value=38 Score=12.91 Aligned_cols=48 Identities=8% Similarity=0.222 Sum_probs=24.0 Q ss_pred HCCCEEEEEEECCCCCH-HHHHHHHHCC-CCCEEEEC---CHHHHHHHHHHHH Q ss_conf 78988999995479755-8999998519-98189946---9899999999999 Q gi|254781108|r 337 NAGMKIYSVAVSAPPEG-QDLLRKCTDS-SGQFFAVN---DSRELLESFDKIT 384 (398) Q Consensus 337 ~~gi~IytIg~~~~~~~-~~~l~~cAs~-~~~yy~a~---~~~~L~~aF~~I~ 384 (398) -.+...|.|-||-++.. .++.+....+ +-..+.|. |+--|...+++|. T Consensus 101 i~~~~~~aiVFG~~~~~leEl~~~i~e~~~~e~i~arA~HNP~pl~~kldkv~ 153 (157) T 1kjn_A 101 ILNTETLAIIFDRDADVLEELVNEIXETLDAEIIAARAHHNPAPLRVRIDRFX 153 (157) T ss_dssp HHCSEEEEEEECSCHHHHHHHHHHHHHHCCCEEEEECCSSCCHHHHHHHHHHH T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH T ss_conf 72786489993376435889999875438976897201158687999999985 No 42 >>3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* (A:) Probab=21.53 E-value=41 Score=12.66 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=24.4 Q ss_pred EEEEECCCCCCCCCCCCCCCHH---------HHHHHHHHHHCCCEEEEEEEC Q ss_conf 1699815887787777766314---------899999999789889999954 Q gi|254781108|r 306 KFVIFITDGENSGASAYQNTLN---------TLQICEYMRNAGMKIYSVAVS 348 (398) Q Consensus 306 k~iillTDG~~~~~~~~~~~~~---------~~~~c~~~K~~gi~IytIg~~ 348 (398) ..||+++-...-........+. +..++.+++..||++.+|.=| T Consensus 163 G~II~isS~~~~~~~~~~~~Y~asKaav~~l~~~la~El~~~gI~Vn~I~PG 214 (291) T 3cxt_A 163 GKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPG 214 (291) T ss_dssp EEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC T ss_pred CEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEECCC T ss_conf 5230223543445786725789989888635999999960538543345428 No 43 >>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} (A:182-436) Probab=20.57 E-value=43 Score=12.54 Aligned_cols=125 Identities=11% Similarity=0.050 Sum_probs=74.6 Q ss_pred CCCCCCCCHHHHHHHHHCCC---C---CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 11235689999999973577---8---88744588999999961134666665667666651699815887787777766 Q gi|254781108|r 251 QCTPLSNNLNEVKSRLNKLN---P---YENTNTYPAMHHAYRELYNEKESSHNTIGSTRLKKFVIFITDGENSGASAYQN 324 (398) Q Consensus 251 ~~~~lt~~~~~~~~~I~~l~---~---~G~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~~~k~iillTDG~~~~~~~~~~ 324 (398) ...++...+..+...++.+. . ..++..+.+|..+...|.... -.|++.++|..+.+...-. T Consensus 95 ~l~~~~~~~~~i~~lL~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~g-------------GkI~~f~~g~pt~G~G~l~ 161 (255) T 1pcx_A 95 MVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG-------------GKIIVVSGTLPNLGIGKLQ 161 (255) T ss_dssp TSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC-------------EEEEEEESSCCCSSTTCCC T ss_pred CEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-------------CEEEEEECCCCCCCCCCCC T ss_conf 512068979999999985545316988873229999999999874579-------------8699995779867886321 Q ss_pred ---------------------CHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHC-CCCCEEEECCH-----HHHH Q ss_conf ---------------------31489999999978988999995479755899999851-99818994698-----9999 Q gi|254781108|r 325 ---------------------TLNTLQICEYMRNAGMKIYSVAVSAPPEGQDLLRKCTD-SSGQFFAVNDS-----RELL 377 (398) Q Consensus 325 ---------------------~~~~~~~c~~~K~~gi~IytIg~~~~~~~~~~l~~cAs-~~~~yy~a~~~-----~~L~ 377 (398) ..--..++..+.++||.|-...+....-+-..|..++. ++|..|.-++. .+-. T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~~~~~~dl~~l~~l~~~TgG~i~~y~~f~~~~~~d~~ 241 (255) T 1pcx_A 162 RRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIV 241 (255) T ss_dssp C--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHH T ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHH T ss_conf 04554445773455653253789999999999987935999860477777288888887458469980686644345789 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999875 Q gi|254781108|r 378 ESFDKITDKIQ 388 (398) Q Consensus 378 ~aF~~I~~~i~ 388 (398) ..+++|.+.+. T Consensus 242 ~l~~dl~~~lt 252 (255) T 1pcx_A 242 KFSTEFAKHIS 252 (255) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999998656 Done!