HHsearch results for GI: 254781108 and protein with PDBid: 1pt6_A
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.76 E-value=2e-17 Score=121.64 Aligned_cols=182 Identities=18% Similarity=0.255 Sum_probs=132.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 65431357505566666676663101233102301268876540310134322011255533341000245665541022
Q gi|254781108|r 146 LAISICMVLDVSRSMEDLYLQKHNDNNNMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQ 225 (398)
Q Consensus 146 ~~~di~lvlD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 225 (398)
.++|++|++|.|+||.. + +..+..+..++..+.
T Consensus 6 ~~~DivfvlD~S~S~~~---f--------------------------------------------~~~k~f~~~~i~~~~ 38 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYP---W--------------------------------------------DSVTAFLNDLLKRMD 38 (213)
T ss_dssp -CEEEEEEEECCTTCCC---H--------------------------------------------HHHHHHHHHHHTTSC
T ss_pred CCEEEEEEEECCCCCCC---H--------------------------------------------HHHHHHHHHHHHHHC
T ss_conf 84489999979888878---8--------------------------------------------999999999999724
Q ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 027687765213465412677654311235689999999973577888--744588999999961134666665667666
Q gi|254781108|r 226 KAIQEKKNLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYE--NTNTYPAMHHAYRELYNEKESSHNTIGSTR 303 (398)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~I~~l~~~G--~T~~~~gl~~a~~~l~~~~~~~~~~~~~~~ 303 (398)
. .....|.+.+.|..............+...+..+|+.+.+.| +|+++.+|.++.+.+.....+.+ ++
T Consensus 39 ~-----~~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g~R-----~~ 108 (213)
T 1pt6_A 39 I-----GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGAR-----RG 108 (213)
T ss_dssp B-----STTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCC-----TT
T ss_pred C-----CCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC-----CC
T ss_conf 4-----8877378899974236899776556779999999877775078410021234344432013224787-----78
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC--------HHHHHHHHHCCCC--CEEEECCH
Q ss_conf 6516998158877877777663148999999997898899999547975--------5899999851998--18994698
Q gi|254781108|r 304 LKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPE--------GQDLLRKCTDSSG--QFFAVNDS 373 (398)
Q Consensus 304 ~~k~iillTDG~~~~~~~~~~~~~~~~~c~~~K~~gi~IytIg~~~~~~--------~~~~l~~cAs~~~--~yy~a~~~ 373 (398)
.+|++||+|||..+. ........+.+|++||+||+||+|...+ ..+.|+.+|+.|+ |+|.+++.
T Consensus 109 ~~k~villTDG~~~d------~~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~ 182 (213)
T 1pt6_A 109 VKKVMVIVTDGESHD------NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp CEEEEEEEESSCCSC------SHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred CEEEEEEEECCCCCC------CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCH
T ss_conf 668999984698788------41599999999988999999997476554543332469999998669985408980899
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999987512
Q gi|254781108|r 374 RELLESFDKITDKIQEQ 390 (398)
Q Consensus 374 ~~L~~aF~~I~~~i~~~ 390 (398)
++|.+++++|.++|...
T Consensus 183 ~~L~~i~~~l~~~ic~~ 199 (213)
T 1pt6_A 183 LALVTIVKTLGERIFAL 199 (213)
T ss_dssp GGGGGGHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997246